Psyllid ID: psy2966

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------

LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMAYICS

cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccc

lnwvcaqdtlPTLAQAIFFCGAIVGGLVFGWvadhfgripalvgtnltGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITslpllvavitpwivpeSARWLVSQGRVDEAVVIMKRFEkinnkkvdpKLYQQLKETCQRQAKqeidgkrysvldlfrtprlrniTCLLIVICAGVRGAIMAYICS

LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRfekinnkkvdpkLYQQLKETCQRqakqeidgkrysvldlfrtprlrnitCLLIVICAGVRGAIMAYICS

**WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMAYIC*

LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKLY**********************LDLFRTPRLRNITCLLIVICAGVRGAIMAYICS

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii

oooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo

ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo

oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo

oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		237	2.2.26 [Sep-21-2011]
Q9VCA2		548	Organic cation transporte	no	N/A	0.919	0.397	0.337	1e-33
Q6A4L0		551	Solute carrier family 22	yes	N/A	0.886	0.381	0.355	2e-31
Q3YAW7		542	Solute carrier family 22	yes	N/A	0.919	0.402	0.346	5e-30
Q9Y226		551	Solute carrier family 22	yes	N/A	0.873	0.375	0.355	1e-29
Q70BM6		543	Solute carrier family 22	yes	N/A	0.915	0.399	0.319	3e-29
A6QLW8		547	Solute carrier family 22	no	N/A	0.940	0.407	0.353	4e-29
Q95R48		567	Organic cation transporte	no	N/A	0.928	0.388	0.308	4e-29
Q9Y694		548	Solute carrier family 22	no	N/A	0.940	0.406	0.349	1e-28
Q80UJ1		556	Solute carrier family 22	no	N/A	0.915	0.390	0.342	2e-28
Q5R540		548	Solute carrier family 22	no	N/A	0.940	0.406	0.349	3e-28

>sp\|Q9VCA2\|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1	Back alignment and function desciption

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 4/222 (1%)

Query: 2   NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
           N VC++  L   + ++F  G ++G L+FG ++D  GR P    + +   + GV  A A  
Sbjct: 121 NLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAPE 180

Query: 62  FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121
           ++ + I R  VG      F + Y++ LE VG S+R F A +++ +FF++   L    AY+
Sbjct: 181 YFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLF-AGVAMQMFFSVGFMLTAGFAYF 239

Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
           + +W++L +  +LP L+ +   WI+PESARWL+ +GR DEA VI+++  K N  +V  ++
Sbjct: 240 IHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEI 299

Query: 182 YQQL-KETCQRQAKQEIDGKR--YSVLDLFRTPRLRNITCLL 220
           Y+QL  E  +++ + E+   +   +V DL R P LR  T L+
Sbjct: 300 YEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLI 341

Probably transports organic cations.
Drosophila melanogaster (taxid: 7227)

>sp\|Q6A4L0\|S22AD_MOUSE Solute carrier family 22 member 13 OS=Mus musculus GN=Slc22a13 PE=2 SV=3	Back alignment and function description

>sp\|Q3YAW7\|S22A7_RABIT Solute carrier family 22 member 7 OS=Oryctolagus cuniculus GN=SLC22A7 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y226\|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2	Back alignment and function description

>sp\|Q70BM6\|S22A8_PIG Solute carrier family 22 member 8 OS=Sus scrofa GN=SLC22A8 PE=2 SV=1	Back alignment and function description

>sp\|A6QLW8\|S22A7_BOVIN Solute carrier family 22 member 7 OS=Bos taurus GN=SLC22A7 PE=2 SV=1	Back alignment and function description

>sp\|Q95R48\|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2	Back alignment and function description

>sp\|Q9Y694\|S22A7_HUMAN Solute carrier family 22 member 7 OS=Homo sapiens GN=SLC22A7 PE=1 SV=1	Back alignment and function description

>sp\|Q80UJ1\|S22AK_MOUSE Solute carrier family 22 member 20 OS=Mus musculus GN=Slc22a20 PE=1 SV=1	Back alignment and function description

>sp\|Q5R540\|S22A7_PONAB Solute carrier family 22 member 7 OS=Pongo abelii GN=SLC22A7 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		237
189235365		637	PREDICTED: similar to AGAP006609-PA [Tri	0.936	0.348	0.684	6e-90
345489096		666	PREDICTED: organic cation transporter pr	0.940	0.334	0.681	1e-89
383856871		631	PREDICTED: organic cation transporter pr	0.940	0.353	0.672	1e-89
350420244		644	PREDICTED: organic cation transporter pr	0.940	0.346	0.686	2e-89
328793554		616	PREDICTED: organic cation transporter-li	0.940	0.362	0.677	2e-89
380020941		638	PREDICTED: organic cation transporter-li	0.940	0.349	0.672	7e-89
307167925		1122	Ectonucleotide pyrophosphatase/phosphodi	0.940	0.198	0.668	2e-88
307208894		670	Organic cation transporter protein [Harp	0.940	0.332	0.672	7e-88
158296157		720	AGAP006609-PA [Anopheles gambiae str. PE	0.936	0.308	0.671	9e-88
221330907		662	CG42269 [Drosophila melanogaster] gi\|220	0.936	0.335	0.684	3e-87

>gi\|189235365\|ref\|XP_967323.2\| PREDICTED: similar to AGAP006609-PA [Tribolium castaneum] gi\|270004239\|gb\|EFA00687.1\| hypothetical protein TcasGA2_TC003564 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 152/222 (68%), Positives = 185/222 (83%)

Query: 2   NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
           NWVC    LP  AQ+IFFCGAI+GGLVFGW+AD FGRIPALVGTNL GFV G+ATAF S 
Sbjct: 175 NWVCENSALPHTAQSIFFCGAILGGLVFGWIADRFGRIPALVGTNLVGFVGGIATAFCSA 234

Query: 62  FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121
           FW F +CRF VG+AFDNCFTMMYILVLEYVGP WRTFVANMSIAIFFT AAS+LPWIAYY
Sbjct: 235 FWTFCLCRFLVGMAFDNCFTMMYILVLEYVGPKWRTFVANMSIAIFFTFAASILPWIAYY 294

Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
           +A+W+ LC +TS PL++A++TPW+VPESARWLVSQG+ D+A+ I+++F++IN  KV+ + 
Sbjct: 295 LADWKMLCYVTSAPLVLAIVTPWLVPESARWLVSQGKFDKAIGILRKFQRINKTKVEEET 354

Query: 182 YQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
           Y + K +C +  K+E   K Y+VLDLF+TPRLR IT LLIV+
Sbjct: 355 YNKFKASCLKTQKEEEMDKAYTVLDLFKTPRLRKITLLLIVM 396

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|345489096\|ref\|XP_001604048.2\| PREDICTED: organic cation transporter protein-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|383856871\|ref\|XP_003703930.1\| PREDICTED: organic cation transporter protein-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|350420244\|ref\|XP_003492447.1\| PREDICTED: organic cation transporter protein-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|328793554\|ref\|XP_001122411.2\| PREDICTED: organic cation transporter-like protein-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|380020941\|ref\|XP_003694334.1\| PREDICTED: organic cation transporter-like protein-like [Apis florea]	Back alignment and taxonomy information

>gi\|307167925\|gb\|EFN61301.1\| Ectonucleotide pyrophosphatase/phosphodiesterase family member 4 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|307208894\|gb\|EFN86109.1\| Organic cation transporter protein [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|158296157\|ref\|XP_316638.4\| AGAP006609-PA [Anopheles gambiae str. PEST] gi\|157016379\|gb\|EAA11678.4\| AGAP006609-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|221330907\|ref\|NP_648019.2\| CG42269 [Drosophila melanogaster] gi\|220902482\|gb\|AAF50706.2\| CG42269 [Drosophila melanogaster]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		237
FB\|FBgn0259164		662	CG42269 [Drosophila melanogast	0.936	0.335	0.684	2.8e-82
FB\|FBgn0035647		706	CG10486 [Drosophila melanogast	0.932	0.313	0.438	1.9e-51
FB\|FBgn0035645		540	CG5592 [Drosophila melanogaste	0.928	0.407	0.393	9.1e-45
FB\|FBgn0038720		585	CG6231 [Drosophila melanogaste	0.928	0.376	0.400	8.1e-44
FB\|FBgn0038716		540	CG7342 [Drosophila melanogaste	0.919	0.403	0.404	1.6e-40
FB\|FBgn0038719		545	CG16727 [Drosophila melanogast	0.936	0.407	0.361	3.3e-40
FB\|FBgn0038715		541	CG7333 [Drosophila melanogaste	0.936	0.410	0.352	7.8e-39
FB\|FBgn0038260		556	CG14855 [Drosophila melanogast	0.940	0.401	0.357	2.1e-36
FB\|FBgn0038718		538	CG17752 [Drosophila melanogast	0.936	0.412	0.333	9.2e-36
FB\|FBgn0038717		533	CG17751 [Drosophila melanogast	0.936	0.416	0.328	8.3e-35

FB\|FBgn0259164 CG42269 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 152/222 (68%), Positives = 183/222 (82%)

Query:     2 NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
             NWVC    LPT AQ+IFF GAIVGGL+FGWVAD FGRIPAL+GTN+ G +AGV TAF S 
Sbjct:   195 NWVCDDAALPTYAQSIFFLGAIVGGLLFGWVADRFGRIPALIGTNMMGLLAGVGTAFVSN 254

Query:    62 FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121
             FW+FAI RFFVG AFDNCFTMMYILVLEYVGP +RTFVANMSIAIFFT AA LLPWIAY+
Sbjct:   255 FWEFAIMRFFVGFAFDNCFTMMYILVLEYVGPKYRTFVANMSIAIFFTGAACLLPWIAYF 314

Query:   122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
             +A+W+ L ++TS PLL+A+ TP++VPESARWLVSQG+VD+AV I+K+ EK N ++V P+ 
Sbjct:   315 LADWKLLAIVTSAPLLLAIFTPFVVPESARWLVSQGKVDKAVGILKKLEKGNGRQVPPQT 374

Query:   182 YQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
             YQ   ++C+R  +QE    +YSVLDLF++PRLR  T LLIVI
Sbjct:   375 YQIFTDSCKRMQEQEAQNGKYSVLDLFKSPRLRRTTLLLIVI 416

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB\|FBgn0035647 CG10486 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0035645 CG5592 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038720 CG6231 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038716 CG7342 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038719 CG16727 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038715 CG7333 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038260 CG14855 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038718 CG17752 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0038717 CG17751 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		237
TIGR00898		505	TIGR00898, 2A0119, cation transport protein	4e-46
TIGR00895		398	TIGR00895, 2A0115, benzoate transport	3e-19
pfam00083		449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-15
cd06174		352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-11
TIGR00879		481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-11
pfam07690		346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-09
TIGR01299		742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-08
PRK11551		406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-07
PRK10077		479	PRK10077, xylE, D-xylose transporter XylE; Provisi	9e-07
TIGR00880		141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-05
PRK12307		426	PRK12307, PRK12307, putative sialic acid transport	1e-05
TIGR00891		405	TIGR00891, 2A0112, putative sialic acid transporte	5e-05
cd06174		352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR00710		385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.001
TIGR00895		398	TIGR00895, 2A0115, benzoate transport	0.002
PRK03893		496	PRK03893, PRK03893, putative sialic acid transport	0.002
PRK11102		377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	0.004
COG2814		394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.004

>gnl\|CDD\|233176 TIGR00898, 2A0119, cation transport protein	Back alignment and domain information

 Score =  159 bits (405), Expect = 4e-46
 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 2   NWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFAST 61
           + VC       L Q+ FF G ++G  VFG+++D FGR   L+ + L   V+GV TAF+  
Sbjct: 120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179

Query: 62  FWQFAICRFFVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY 121
           +  F + R  VG+     +    +L  E++    R  V  + I +FF+L   LLP +AY+
Sbjct: 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYF 238

Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
           + +W++L +  SLP  +  +  W VPES RWL+SQGR++EA+ I++R  KIN K    KL
Sbjct: 239 IPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGK----KL 294

Query: 182 YQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
             ++      +       K+YS LDLFRTP LR  T  L+++
Sbjct: 295 PAEVLSLSLEKDLSS-SKKQYSFLDLFRTPNLRKTTLCLMML 335

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl\|CDD\|233175 TIGR00895, 2A0115, benzoate transport	Back alignment and domain information

>gnl\|CDD\|215702 pfam00083, Sugar_tr, Sugar (and other) transporter	Back alignment and domain information

>gnl\|CDD\|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>gnl\|CDD\|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family	Back alignment and domain information

>gnl\|CDD\|219516 pfam07690, MFS_1, Major Facilitator Superfamily	Back alignment and domain information

>gnl\|CDD\|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2	Back alignment and domain information

>gnl\|CDD\|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>gnl\|CDD\|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional	Back alignment and domain information

>gnl\|CDD\|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein	Back alignment and domain information

>gnl\|CDD\|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|233172 TIGR00891, 2A0112, putative sialic acid transporter	Back alignment and domain information

>gnl\|CDD\|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>gnl\|CDD\|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>gnl\|CDD\|233175 TIGR00895, 2A0115, benzoate transport	Back alignment and domain information

>gnl\|CDD\|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>gnl\|CDD\|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		237
TIGR00898		505	2A0119 cation transport protein.	99.97
KOG0255\|consensus		521		99.96
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
KOG0569\|consensus		485		99.95
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.92
KOG0254\|consensus		513		99.92
KOG0253\|consensus		528		99.91
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.89
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.88
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.87
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.86
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.86
PRK10642		490	proline/glycine betaine transporter; Provisional	99.86
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.84
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.84
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.83
KOG2532\|consensus		466		99.83
TIGR00893		399	2A0114 d-galactonate transporter.	99.83
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.83
PRK03545		390	putative arabinose transporter; Provisional	99.82
KOG2533\|consensus		495		99.82
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.82
PRK12307		426	putative sialic acid transporter; Provisional	99.81
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.81
PRK09952		438	shikimate transporter; Provisional	99.81
TIGR00895		398	2A0115 benzoate transport.	99.81
TIGR00891		405	2A0112 putative sialic acid transporter.	99.8
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.8
PRK11663		434	regulatory protein UhpC; Provisional	99.8
TIGR00900		365	2A0121 H+ Antiporter protein.	99.8
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.79
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.79
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.78
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.78
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.78
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.77
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.77
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.77
PRK09705		393	cynX putative cyanate transporter; Provisional	99.76
KOG1330\|consensus		493		99.76
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.76
KOG2615\|consensus		451		99.76
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.76
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.75
PRK10091		382	MFS transport protein AraJ; Provisional	99.75
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.75
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.75
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.75
PLN00028		476	nitrate transmembrane transporter; Provisional	99.74
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	99.74
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.74
PRK15075		434	citrate-proton symporter; Provisional	99.73
PRK11043		401	putative transporter; Provisional	99.73
PRK10642		490	proline/glycine betaine transporter; Provisional	99.73
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.73
TIGR00805		633	oat sodium-independent organic anion transporter.	99.72
PRK03893		496	putative sialic acid transporter; Provisional	99.72
PRK10054		395	putative transporter; Provisional	99.72
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.71
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.71
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.7
PRK10133		438	L-fucose transporter; Provisional	99.7
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.69
PRK10504		471	putative transporter; Provisional	99.69
KOG0252\|consensus		538		99.68
PRK03699		394	putative transporter; Provisional	99.68
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.68
PRK12382		392	putative transporter; Provisional	99.67
PRK09874		408	drug efflux system protein MdtG; Provisional	99.66
PRK03633		381	putative MFS family transporter protein; Provision	99.66
KOG3764\|consensus		464		99.65
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.65
PRK05122		399	major facilitator superfamily transporter; Provisi	99.65
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.64
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.64
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.64
PRK10489		417	enterobactin exporter EntS; Provisional	99.63
PTZ00207		591	hypothetical protein; Provisional	99.61
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.61
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	99.6
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.57
PRK10207		489	dipeptide/tripeptide permease B; Provisional	99.56
PRK11902		402	ampG muropeptide transporter; Reviewed	99.56
TIGR00901		356	2A0125 AmpG-related permease.	99.55
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.55
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.55
PRK11010		491	ampG muropeptide transporter; Validated	99.52
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.52
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.5
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.48
KOG2504\|consensus		509		99.45
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.44
PRK15011		393	sugar efflux transporter B; Provisional	99.42
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	99.39
PRK05122		399	major facilitator superfamily transporter; Provisi	99.39
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.38
PRK09528		420	lacY galactoside permease; Reviewed	99.38
PRK09528		420	lacY galactoside permease; Reviewed	99.37
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.37
PRK15462		493	dipeptide/tripeptide permease D; Provisional	99.37
PRK15011		393	sugar efflux transporter B; Provisional	99.37
PRK09584		500	tppB putative tripeptide transporter permease; Rev	99.36
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	99.35
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.34
PRK09952		438	shikimate transporter; Provisional	99.34
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.33
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.3
PRK12382		392	putative transporter; Provisional	99.29
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.28
TIGR00898		505	2A0119 cation transport protein.	99.27
PRK09874		408	drug efflux system protein MdtG; Provisional	99.26
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.23
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.22
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.21
PRK10489		417	enterobactin exporter EntS; Provisional	99.2
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.18
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.17
PRK03893		496	putative sialic acid transporter; Provisional	99.16
KOG0253\|consensus		528		99.14
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.13
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.13
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.12
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.11
PRK03545		390	putative arabinose transporter; Provisional	99.1
PLN00028		476	nitrate transmembrane transporter; Provisional	99.1
PRK03633		381	putative MFS family transporter protein; Provision	99.1
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.09
KOG0569\|consensus		485		99.09
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	99.08
PRK09669		444	putative symporter YagG; Provisional	99.08
PRK03699		394	putative transporter; Provisional	99.07
TIGR00893		399	2A0114 d-galactonate transporter.	99.07
KOG2325\|consensus		488		99.07
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.06
TIGR00891		405	2A0112 putative sialic acid transporter.	99.05
PF13347		428	MFS_2: MFS/sugar transport protein	99.05
COG2270		438	Permeases of the major facilitator superfamily [Ge	99.04
PRK10504		471	putative transporter; Provisional	99.04
TIGR00900		365	2A0121 H+ Antiporter protein.	99.02
PRK09705		393	cynX putative cyanate transporter; Provisional	99.02
TIGR00895		398	2A0115 benzoate transport.	99.01
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.01
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	99.01
PRK10429		473	melibiose:sodium symporter; Provisional	98.97
PRK12307		426	putative sialic acid transporter; Provisional	98.97
TIGR00788		468	fbt folate/biopterin transporter. The only functio	98.97
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.97
PRK15075		434	citrate-proton symporter; Provisional	98.96
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	98.94
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	98.91
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	98.9
PRK11010		491	ampG muropeptide transporter; Validated	98.89
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.87
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.87
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.86
PRK10429		473	melibiose:sodium symporter; Provisional	98.85
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.84
PRK11663		434	regulatory protein UhpC; Provisional	98.84
PRK09848		448	glucuronide transporter; Provisional	98.81
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	98.8
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.8
KOG2504\|consensus		509		98.8
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.8
PRK11646		400	multidrug resistance protein MdtH; Provisional	98.79
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.78
PRK10054		395	putative transporter; Provisional	98.76
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	98.76
PRK10091		382	MFS transport protein AraJ; Provisional	98.75
PRK11195		393	lysophospholipid transporter LplT; Provisional	98.74
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	98.73
COG0477		338	ProP Permeases of the major facilitator superfamil	98.73
KOG0254\|consensus		513		98.73
PRK14995		495	methyl viologen resistance protein SmvA; Provision	98.73
TIGR00901		356	2A0125 AmpG-related permease.	98.73
PRK11462		460	putative transporter; Provisional	98.72
PRK09669		444	putative symporter YagG; Provisional	98.72
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	98.71
PRK09848		448	glucuronide transporter; Provisional	98.71
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	98.69
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	98.68
PRK11902		402	ampG muropeptide transporter; Reviewed	98.67
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	98.67
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.66
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	98.66
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.65
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.65
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	98.65
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.64
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	98.63
KOG0252\|consensus		538		98.6
PF13347		428	MFS_2: MFS/sugar transport protein	98.59
PRK10473		392	multidrug efflux system protein MdtL; Provisional	98.59
PRK10213		394	nepI ribonucleoside transporter; Reviewed	98.58
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	98.57
PRK11462		460	putative transporter; Provisional	98.56
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	98.56
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.54
TIGR00896		355	CynX cyanate transporter. This family of proteins	98.53
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.53
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.5
KOG3626\|consensus		735		98.5
KOG2563\|consensus		480		98.49
COG2211		467	MelB Na+/melibiose symporter and related transport	98.48
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	98.48
PRK10133		438	L-fucose transporter; Provisional	98.48
KOG2816\|consensus		463		98.48
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.44
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	98.43
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.42
TIGR00788		468	fbt folate/biopterin transporter. The only functio	98.41
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.37
COG2211		467	MelB Na+/melibiose symporter and related transport	98.36
TIGR00926		654	2A1704 Peptide:H+ symporter (also transports b-lac	98.35
KOG4686\|consensus		459		98.34
PRK11043		401	putative transporter; Provisional	98.34
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.33
KOG0255\|consensus		521		98.3
KOG3762\|consensus		618		98.28
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.27
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	98.22
PRK11652		394	emrD multidrug resistance protein D; Provisional	98.21
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.18
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	98.11
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	98.06
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.99
KOG3764\|consensus		464		97.97
TIGR00769		472	AAA ADP/ATP carrier protein family. These proteins	97.91
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.89
KOG4686\|consensus		459		97.88
KOG2532\|consensus		466		97.87
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.82
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.8
KOG3098\|consensus		461		97.7
KOG2533\|consensus		495		97.67
COG2270		438	Permeases of the major facilitator superfamily [Ge	97.64
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	97.49
PF06779		85	DUF1228: Protein of unknown function (DUF1228); In	97.47
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.47
PRK15462		493	dipeptide/tripeptide permease D; Provisional	97.38
PTZ00207		591	hypothetical protein; Provisional	97.35
KOG0637\|consensus		498		97.35
PRK15403		413	multidrug efflux system protein MdtM; Provisional	97.3
TIGR00939		437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.23
KOG2816\|consensus		463		97.1
PF12832		77	MFS_1_like: MFS_1 like family	97.02
PF00854		372	PTR2: POT family; InterPro: IPR000109 This entry r	96.94
PF03219		491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.78
KOG2615\|consensus		451		96.76
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.69
KOG3098\|consensus		461		96.67
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.58
KOG3810\|consensus		433		96.32
PF13000		544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.06
KOG4332\|consensus		454		95.92
PRK03612		521	spermidine synthase; Provisional	95.66
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.56
KOG3574\|consensus		510		95.22
KOG3880\|consensus		409		95.17
KOG2563\|consensus		480		95.01
KOG1237\|consensus		571		94.46
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.24
COG3202		509	ATP/ADP translocase [Energy production and convers	92.96
KOG3880\|consensus		409		92.74
KOG3762\|consensus		618		92.31
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.45
KOG1330\|consensus		493		91.14
PF07672		267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	89.38
PF01733		309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.23
KOG1479\|consensus		406		89.04
TIGR00939		437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.57
COG5336		116	Uncharacterized protein conserved in bacteria [Fun	85.76
PF07672		267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.22
KOG1479\|consensus		406		84.13
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	83.22
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	82.97
KOG4332\|consensus		454		80.26

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

Probab=99.97  E-value=2.2e-28  Score=208.91  Aligned_cols=227  Identities=36%  Similarity=0.679  Sum_probs=191.6

Q ss_pred             CccccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccchhh
Q psy2966           1 LNWVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFASTFWQFAICRFFVGLAFDNCF   80 (237)
Q Consensus         1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~   80 (237)
                      ||+.|+++.+.++..+++.++..+++++.|+++||+|||++++++.++.+++.+..+++++++.+++.|++.|++.+...
T Consensus       119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  198 (505)
T TIGR00898       119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW  198 (505)
T ss_pred             ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence            68899989999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccccChHHHHhcCCHH
Q psy2966          81 TMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVD  160 (237)
Q Consensus        81 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~pe~p~~~~~~~~~~  160 (237)
                      +....++.|++|+++|+++.++ ...+..+|.++++.++....+||+.+++.+++.++..+..+++||+|+|+..+++.+
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~  277 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTL-IQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIE  277 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHH
Confidence            9999999999999999999998 688889999999999888888999999888887777777788999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhhhhhhccccchhccccCchHHHHHHHHHHHHHHHHHHHHH
Q psy2966         161 EAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVICAGVRGAIMA  233 (237)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (237)
                      ++.+..++..+.++....++..+...+   +  +++++.++.++++++++|.++..++.....|+.....++.
T Consensus       278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (505)
T TIGR00898       278 EALKILQRIAKINGKKLPAEVLSLSLE---K--DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG  345 (505)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHhhhhh---h--hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888877766544332211111   1  0111122457889999999999888887777776655543

>KOG0255\|consensus	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>KOG0569\|consensus	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>KOG0254\|consensus	Back alignment and domain information

>KOG0253\|consensus	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2532\|consensus	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>KOG2533\|consensus	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>KOG1330\|consensus	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>KOG2615\|consensus	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>KOG0252\|consensus	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>KOG3764\|consensus	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>KOG2504\|consensus	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>KOG0253\|consensus	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>KOG0569\|consensus	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>KOG2325\|consensus	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>KOG2504\|consensus	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG0254\|consensus	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>KOG0252\|consensus	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>KOG3626\|consensus	Back alignment and domain information

>KOG2563\|consensus	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>KOG2816\|consensus	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)	Back alignment and domain information

>KOG4686\|consensus	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>KOG0255\|consensus	Back alignment and domain information

>KOG3762\|consensus	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>KOG3764\|consensus	Back alignment and domain information

>TIGR00769 AAA ADP/ATP carrier protein family	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>KOG4686\|consensus	Back alignment and domain information

>KOG2532\|consensus	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>KOG3098\|consensus	Back alignment and domain information

>KOG2533\|consensus	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>KOG0637\|consensus	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)	Back alignment and domain information

>KOG2816\|consensus	Back alignment and domain information

>PF12832 MFS_1_like: MFS_1 like family	Back alignment and domain information

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters	Back alignment and domain information

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions	Back alignment and domain information

>KOG2615\|consensus	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>KOG3098\|consensus	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>KOG3810\|consensus	Back alignment and domain information

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]	Back alignment and domain information

>KOG4332\|consensus	Back alignment and domain information

>PRK03612 spermidine synthase; Provisional	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>KOG3574\|consensus	Back alignment and domain information

>KOG3880\|consensus	Back alignment and domain information

>KOG2563\|consensus	Back alignment and domain information

>KOG1237\|consensus	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>COG3202 ATP/ADP translocase [Energy production and conversion]	Back alignment and domain information

>KOG3880\|consensus	Back alignment and domain information

>KOG3762\|consensus	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>KOG1330\|consensus	Back alignment and domain information

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)	Back alignment and domain information

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs	Back alignment and domain information

>KOG1479\|consensus	Back alignment and domain information

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)	Back alignment and domain information

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)	Back alignment and domain information

>KOG1479\|consensus	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>KOG4332\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		237
4gby_A		491	The Structure Of The Mfs (Major Facilitator Superfa		8e-07

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Back alignment and structure

Iteration: 1

Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 37/221 (16%) Query: 5 CAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA------- 57 A ++L A G I+GG + G+ ++ FGR +L + F++GV +A Sbjct: 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT 110 Query: 58 -----------FASTFWQFAICRFF--VGLAFDNCFTMMYILVLEYVGPSWRTFVANMSI 104 A +F I R +G+ + + MYI L + N Sbjct: 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 Query: 105 AIFFTLAASLLPWIAYYVA-----------NWQYLCVITSLPLLVAVITPWIVPESARWL 153 IF L L+ + Y++A W+Y+ +P L+ ++ + VPES RWL Sbjct: 171 IIFGQL---LVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL 227 Query: 154 VSQGRVDEAVVIMKRFEKINNKKVDPKLYQQLKETCQRQAK 194 +S+G+ ++A I++ KI + + Q++K + K Sbjct: 228 MSRGKQEQAEGILR---KIMGNTLATQAVQEIKHSLDHGRK 265

PyMOL of 4gby

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		237
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 47/165 (28%)

Query: 75  AFD-NCFTMM---YILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYVANWQYL-C 129
           AF+ +C  ++   +  V +++  +  T ++    ++  T            +  +  L C
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKY--LDC 313

Query: 130 VITSL--------PLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
               L        P  +++I   I    A W                ++ +N  K+   +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATW--------------DNWKHVNCDKLTTII 359

Query: 182 ---YQQLKETCQRQAKQEIDGKRYSVLDLFRTPRLRNITCLLIVI 223
                 L+    R+         +  L +F  P   +I  +L+ +
Sbjct: 360 ESSLNVLEPAEYRK--------MFDRLSVF--PPSAHIPTILLSL 394

PyMOL of 1vt4

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		237
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	99.94
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.85
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.84
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.83
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.75
2xut_A		524	Proton/peptide symporter family protein; transport	99.6
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	99.39
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.36
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.32
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.31
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.12
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.07
2xut_A		524	Proton/peptide symporter family protein; transport	98.67
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	98.53

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

Probab=99.94  E-value=1.9e-25  Score=188.58  Aligned_cols=162  Identities=24%  Similarity=0.460  Sum_probs=143.4

Q ss_pred             chhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHH------------------hhccHHHHHHHHH
Q psy2966           9 TLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATA------------------FASTFWQFAICRF   70 (237)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~   70 (237)
                      .+.+++.+.+.+|.++|++++|+++||+|||++++++.+++.++.++++                  ++++++.++++|+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999988                  4789999999999


Q ss_pred             HHhhccchhhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHH
Q psy2966          71 FVGLAFDNCFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYYV-----------ANWQYLCVITSLPLLVA  139 (237)
Q Consensus        71 l~g~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~w~~~~~~~~~~~~~~  139 (237)
                      +.|++.|+..+..+.+++|+.|+++|++..++ .+.+...|.++++.++...           ..|+..+....++.++.
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSF-NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh-hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence            99999999999999999999999999999998 7888888888877766543           14777777777777777


Q ss_pred             HHHhhccccChHHHHhcCCHHHHHHHHHHHHH
Q psy2966         140 VITPWIVPESARWLVSQGRVDEAVVIMKRFEK  171 (237)
Q Consensus       140 ~~~~~~~pe~p~~~~~~~~~~~~~~~~~~~~~  171 (237)
                      .+..+++||+|+|+..+++.+++.+.+++...
T Consensus       214 ~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~  245 (491)
T 4gc0_A          214 LMLLYTVPESPRWLMSRGKQEQAEGILRKIMG  245 (491)
T ss_dssp             HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence            78888999999999999999999988887764

PyMOL of 4gc0

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		237
d1pw4a_		447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-05
d1pv7a_		417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 11/185 (5%)

Query: 13  LAQAIFFCGAIVGGLVFGWVADHFGR----IPALVGTNLTGFVAGVATAFASTFWQFAIC 68
            A +           + G V+D           L+         G      S+     + 
Sbjct: 63  FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 122

Query: 69  RFFVGLAFDNCFTMMYILVLEYVGPSWRT-------FVANMSIAIFFTLAASLLPWIAYY 121
            F  G      +      ++ +     R           N+   I   L    + W   +
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182

Query: 122 VANWQYLCVITSLPLLVAVITPWIVPESARWLVSQGRVDEAVVIMKRFEKINNKKVDPKL 181
            A          L  L A       P+S      +   ++         +         +
Sbjct: 183 HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 242

Query: 182 YQQLK 186
              L 
Sbjct: 243 QYVLP 247

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		237
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.84
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.11

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.7e-21  Score=158.53  Aligned_cols=147  Identities=9%  Similarity=0.048  Sum_probs=122.6

Q ss_pred             cccCCCchhhHHHHHHHHhhhhhhhhhhcccccccchHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhccch
Q psy2966           3 WVCAQDTLPTLAQAIFFCGAIVGGLVFGWVADHFGRIPALVGTNLTGFVAGVATAFA----STFWQFAICRFFVGLAFDN   78 (237)
Q Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~g~~~~~   78 (237)
                      ++.+ ..+.+++.+++.+++.++++++|+++||+|||+++.++.++.+++.++.++.    ++++.+++.|++.|++.+.
T Consensus        54 ~g~s-~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  132 (447)
T d1pw4a_          54 QGFS-RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM  132 (447)
T ss_dssp             STTC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHH
T ss_pred             hCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhh
Confidence            4444 6789999999999999999999999999999999999999999998888765    4678899999999999999


Q ss_pred             hhhHHhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHH-HHHHhhccccChH
Q psy2966          79 CFTMMYILVLEYVGPSWRTFVANMSIAIFFTLAASLLPWIAYY----VANWQYLCVITSLPLLV-AVITPWIVPESAR  151 (237)
Q Consensus        79 ~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~~~----~~~w~~~~~~~~~~~~~-~~~~~~~~pe~p~  151 (237)
                      ..+....++.|++|+++|+++.++ .+.+..+|..+++.+...    ..+|++.+++.+.+.++ .++.+++.+|+|+
T Consensus       133 ~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         133 GWPPCGRTMVHWWSQKERGGIVSV-WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             THHHHHHHHHTTCTTTHHHHHHHH-HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hhhHHHHHHHHHHHhhcccccccc-cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence            999999999999999999999999 777888887777765544    34899888776665544 4445556666654

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure