Psyllid ID: psy2997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MVLRFSHDEPTPSYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSPLRELTPEEGS
Secondary Structure (PSIPRED)
ccEEccccccccccccccHHHHHHHHHHHcccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccccccccEEcccccccEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccHHHHHcccEccccccHHHHcccccEEcccccccccEcccccccccccccccccHHHHHHHHHccccHHHccHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHcccccccEEcccccccccEcccccccccccccccccHHHHHHHHHccccHHHccHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccHHHccccccc
Coil and Loop (DISEMBL)
mvlrfshdeptpsyprnpgwinrhaIVQQKSVSTltrlfpftgnrevvghgrngiaaygdnvlcpfpairykvfdsdlLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEftrhgaypdteylgsVGLSMVVIAVSLFYYAFLKafflpplpatmtpegweNTVTKMIQLQwnpitgmaskwdyendrwrpgfkpcvpVLLRlsqgilppspphhhdsgrlgehgnrevvghgrngiaaygdnvlcpfpairykvfdsdlLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEftrhgaypdteylggvGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKafflpplpttmtpegweNTVTKMIQLQwnpitgmaskwdyendrwrpgfkpwfldylpknsplreltpeegs
Flexible Loop (DISEMBL)
mvlrfshdeptpsyprnpgwinrHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWfldylpknsplreltpeegs
Low Complexity Region (SEG)
MVLRFSHDEPTPSYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSlfyyaflkafflPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSlfyyaflkafflpplpttmtpEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSPLRELTPEEGS
Disordered region (IsUnstruct)
******************GWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGI*********************VVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLP**************
Disordered Region (DISOPRED)
*********P***YPRNPGWINRHAIVQQKS******LFPFTG*REVVGHGRNGIAAYGDNVLCPFPAIRYKVFDS****************SKEEKKMLYRASFRQ**************EYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQ***********************VVGHGRNGIAAYGDNVLCPFPAIRYKVF******************SKEEKKMLYRASFRQT*************EYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSP**********
Disordered Region (DISEMBL)
************SYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSPLR********
Disordered Region (DISPRO)
*VL*F*HDEPTPSYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPH**DSGR**EHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSP**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLRFSHDEPTPSYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSPLRELTPEEGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
P13073	169	Cytochrome c oxidase subu	yes	N/A	0.366	0.899	0.319	3e-16
Q9I8U0	169	Cytochrome c oxidase subu	N/A	N/A	0.385	0.946	0.315	9e-16
O46581	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.335	1e-15
O46578	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.335	2e-15
O46577	144	Cytochrome c oxidase subu	yes	N/A	0.339	0.979	0.335	2e-15
O46580	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.335	2e-15
O46579	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.335	2e-15
O46586	137	Cytochrome c oxidase subu	N/A	N/A	0.322	0.978	0.330	6e-15
O46585	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.328	9e-15
O46584	144	Cytochrome c oxidase subu	N/A	N/A	0.339	0.979	0.321	2e-14

>sp|P13073|COX41_HUMAN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo sapiens GN=COX4I1 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 36  TRLFPFTGNR------------EVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
           TR+F   G R             VV      + AY D    P P + + K   +    L+
Sbjct: 4   TRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALK 63

Query: 83  EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA 142
           EKEK  W++LS +EK  LYR  F+++FAE  R       E+   VG +M  I  +     
Sbjct: 64  EKEKASWSSLSMDEKVELYRIKFKESFAEMNR----GSNEWKTVVGGAMFFIGFTALVIM 119

Query: 143 FLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
           + K +   PLP +   E       +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 120 WQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Homo sapiens (taxid: 9606)

>sp|Q9I8U0|COX41_THUOB Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Thunnus obesus PE=2 SV=1

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 8/168 (4%)

Query: 25  AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
           ++V ++++ST   L    G   V       + AY D    P P I Y +    +   L+E
Sbjct: 8   SLVGKRAISTSVCL---RGGHGVAKVEEYTLPAYFDRRENPLPDICYVQALSPEQQSLKE 64

Query: 84  KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
           KEKG W ALS EEK  LYR SF+Q+FAE  +      +E+   VG  +  I  +     +
Sbjct: 65  KEKGSWAALSNEEKIALYRISFKQSFAEMNK----GSSEWKSVVGGMLFFIGFTGLVVLW 120

Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
            + +    +P T  PE     + +M+ ++ NP+ G ++ WDYEN +W+
Sbjct: 121 QRKYVYGAVPHTFDPEYKAKELQRMLDMRINPVEGFSAHWDYENKQWK 168

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Thunnus obesus (taxid: 8241)

EC: 1

EC: .

EC: 9

EC: .

EC: 3

EC: .

EC: 1

>sp|O46581|COX41_THEGE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Theropithecus gelada GN=COX4I1 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + AY D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDFTLPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M    ++     + K +   PLP T   E      
Sbjct: 62  KESFAEMNRRS----NEWKTVVGTAMFFFGITALIVMWEKRYVYGPLPQTFDKEWVAMQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Theropithecus gelada (taxid: 9565)

>sp|O46578|COX41_GORGO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Gorilla gorilla gorilla GN=COX4I1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + AY D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +     + K +   PLP +   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Gorilla gorilla gorilla (taxid: 9595)

>sp|O46577|COX41_PANTR Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Pan troglodytes GN=COX4I1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + AY D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +     + K +   PLP +   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pan troglodytes (taxid: 9598)

>sp|O46580|COX41_HYLAG Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Hylobates agilis GN=COX4I1 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + AY D    P P + + K+  +    L+E EK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDFSLPAYVDRRDHPLPEVAHVKLLSASQKALKENEKAAWSSLSMDEKVELYRIKF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +     + K +   PLP T   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIMWQKHYVYGPLPQTFDKEWVGKQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Hylobates agilis (taxid: 9579)

>sp|O46579|COX41_PONPY Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Pongo pygmaeus GN=COX4I1 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      ++AY D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDFSLSAYVDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +     + K     PLP +   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIMWQKRHVYGPLPQSFDKEWVAKQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pongo pygmaeus (taxid: 9600)

>sp|O46586|COX41_PERPO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Perodicticus potto edwarsi GN=COX4I1 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 54  GIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEF 112
            + +Y D    P P + + K   +    L+EKEK  W+ LS +EK  LYR  F+++FAE 
Sbjct: 2   ALPSYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSNLSMDEKVELYRIQFKESFAEM 61

Query: 113 TRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQ 172
            R       E+   VG +M+ I  +     + K +   P+P T  P+       KM+ ++
Sbjct: 62  NRGT----NEWKTVVGTAMLFIGFTALIVIWEKRYVYGPIPHTFDPDWVAKQTKKMLDMK 117

Query: 173 WNPITGMASKWDYENDRWR 191
            NPI G A+KWDYE   W+
Sbjct: 118 VNPIQGFAAKWDYEKQEWK 136

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Perodicticus potto edwarsi (taxid: 9473)

>sp|O46585|COX41_PITPI Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Pithecia pithecia GN=COX4I1 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + +Y D    P P + + +   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDYTLQSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +       K +   PLP T   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIMLEKRYVYGPLPHTFDKEWVAMQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ L+ NP+ G+ASKWDYE   W+
Sbjct: 118 KRMLDLKVNPVDGLASKWDYEKKEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pithecia pithecia (taxid: 43777)

>sp|O46584|COX41_AOTAZ Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment) OS=Aotus azarae GN=COX4I1 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + +Y D    P P + + +   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 2   VVKSEDYALPSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +       K +   PLP T   E      
Sbjct: 62  KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIILEKRYVYGPLPHTFDKEWVAMQT 117

Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ L+ NP+ G+ASKWDY+   W+
Sbjct: 118 KRMLDLKVNPVDGLASKWDYDKKEWK 143

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Aotus azarae (taxid: 30591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
332375004	180	unknown [Dendroctonus ponderosae]	0.395	0.911	0.482	2e-35
332375791	186	unknown [Dendroctonus ponderosae]	0.349	0.779	0.510	5e-34
312379710	207	hypothetical protein AND_08362 [Anophele	0.349	0.700	0.489	4e-32
389608841	174	cytochrome c oxidase subunit iv [Papilio	0.397	0.948	0.459	3e-31
158293496	182	AGAP008727-PA [Anopheles gambiae str. PE	0.349	0.796	0.469	3e-31
308512695	179	cytochrome c oxidase polypeptide IV [Bis	0.397	0.921	0.431	1e-30
321469969	191	hypothetical protein DAPPUDRAFT_230889 [	0.349	0.759	0.469	1e-30
282158083	175	cytochrome c oxidase subunit IV [Triboli	0.395	0.937	0.435	3e-30
255710185	191	cytochrome c oxidase subunit IV/COX5b [O	0.397	0.863	0.447	4e-30
110456545	155	cytochrome c oxidase polypeptide IV-like	0.359	0.961	0.467	6e-30

>gi|332375004|gb|AEE62643.1| unknown [Dendroctonus ponderosae]

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 111/168 (66%), Gaps = 4/168 (2%)

Query: 24  HAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLRE 83
           +AIV+  +    + +    G REVVG+G NG   Y D V  P PAIR+K  ++D+L LRE
Sbjct: 16  NAIVRPGAAPMSSYVKTLIGKREVVGYGFNGEPNYVDRVDFPLPAIRWKEPNADILALRE 75

Query: 84  KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
           KEKG W  LS EEKK LYRASFRQTFAEF      P  E+ G++G+++V+I+ +L+    
Sbjct: 76  KEKGDWKLLSVEEKKALYRASFRQTFAEFKA----PTGEWKGTIGVTLVLISCALWVIYG 131

Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
           LKAF  PPLP++ +PE     + +++ LQ NPI G++SKWDYE D W+
Sbjct: 132 LKAFVYPPLPSSFSPENRAAQLRRILDLQINPIQGISSKWDYEKDDWK 179

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375791|gb|AEE63036.1| unknown [Dendroctonus ponderosae]

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 99/149 (66%), Gaps = 4/149 (2%)

Query: 43  GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYR 102
           G REVVG G NG   Y D V  P PAIR+K   +D+L LREKEKG W  LS EEKK LYR
Sbjct: 41  GKREVVGFGYNGEPTYVDRVDFPLPAIRWKEPTTDILALREKEKGDWKQLSIEEKKALYR 100

Query: 103 ASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWE 162
           ASFRQTFAEF      P+ E+ G++G++++ ++ + + +  LK F  PPLP + TPE   
Sbjct: 101 ASFRQTFAEF----KAPNGEWKGTIGITLLFVSFAFWIFFGLKTFVYPPLPQSFTPENRA 156

Query: 163 NTVTKMIQLQWNPITGMASKWDYENDRWR 191
             + ++I LQ NPI G++SKWDYE D W+
Sbjct: 157 AQLRRIIDLQINPIEGISSKWDYEKDDWK 185

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379710|gb|EFR25902.1| hypothetical protein AND_08362 [Anopheles darlingi]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 95/149 (63%), Gaps = 4/149 (2%)

Query: 43  GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYR 102
           G REVVGHG NG+  Y D V  P PAIR+K    D+L LREKEKG W  LS +EKK LYR
Sbjct: 63  GKREVVGHGWNGMPVYADRVDYPMPAIRFKEPTRDVLALREKEKGDWKKLSVQEKKALYR 122

Query: 103 ASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWE 162
           ASF QTFAE      YP  E+   +G +++V ++SL     LKAF   P+P T   E  +
Sbjct: 123 ASFCQTFAEMK----YPTGEWKACIGAALIVTSMSLAGMLLLKAFVYEPIPETFDEEHQK 178

Query: 163 NTVTKMIQLQWNPITGMASKWDYENDRWR 191
             + +M+ L  NPI G++SKWDY+N++W+
Sbjct: 179 AQLKRMLDLNINPIHGVSSKWDYDNNKWK 207

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608841|dbj|BAM18032.1| cytochrome c oxidase subunit iv [Papilio xuthus]

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/172 (45%), Positives = 104/172 (60%), Gaps = 7/172 (4%)

Query: 23  RHAIVQQKSVSTLTRL---FPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLL 79
           R AI+    V   TR        GNRE VG+G NG   Y D    P PA+R++    D+ 
Sbjct: 7   RRAIIDAIRVPVGTRASSELAKIGNREWVGYGYNGQPTYVDRPDFPLPAVRFRPDTPDVK 66

Query: 80  LLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLF 139
           +LREKEKG W  L+ EEKK LYRASF QTFAEF      P  E+ G VG S+V I++SL+
Sbjct: 67  VLREKEKGDWRKLTLEEKKALYRASFCQTFAEFQA----PTGEWKGVVGWSLVFISLSLW 122

Query: 140 YYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
            Y  +K F   PLPA+   +  +  + +M+ L+ NPI G++SKWDYEN+RW+
Sbjct: 123 IYMGMKLFVYSPLPASFDEDAQKAQLKRMLDLKVNPIDGLSSKWDYENNRWK 174

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293496|ref|XP_314839.4| AGAP008727-PA [Anopheles gambiae str. PEST] gi|157016735|gb|EAA10128.4| AGAP008727-PA [Anopheles gambiae str. PEST]

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 43  GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYR 102
           G REVVGHG NG+  Y D V  P PAIR+K    D+L LREKEKG W  +S +EKK LYR
Sbjct: 38  GKREVVGHGWNGLPVYADRVDYPMPAIRFKENTRDVLALREKEKGDWKKMSVQEKKALYR 97

Query: 103 ASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWE 162
           ASF QTFAE      +P  E+   +G +++  ++SL     LKAF   P+P T   E  +
Sbjct: 98  ASFCQTFAEMK----HPTGEWKACLGAALIAASMSLIGMMLLKAFVYEPIPETFDEEHQK 153

Query: 163 NTVTKMIQLQWNPITGMASKWDYENDRWR 191
             + +M+ L  NPI G++SKWDY+N++W+
Sbjct: 154 AQLKRMLDLNINPIHGVSSKWDYDNNKWK 182

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512695|gb|ADO33001.1| cytochrome c oxidase polypeptide IV [Biston betularia]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 4/169 (2%)

Query: 23  RHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLR 82
           R  +  + S S+    F   GNRE VG G NG+  Y D    P PA+R++    D+ +LR
Sbjct: 15  RVPVASRASSSSNIGEFDKIGNREWVGFGYNGMPNYVDRPDFPLPAVRFRPDTPDIKVLR 74

Query: 83  EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA 142
           EKEK  W  LS EEKK LYRASF QTFAEF      P  E+ G VG ++ + ++S++ Y 
Sbjct: 75  EKEKADWRKLSLEEKKALYRASFCQTFAEFQ----APSGEWKGVVGWTLAIASISMWIYM 130

Query: 143 FLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
            +K F   PLP +++ E  +  + +M+ L+ NPI G++SKWDYEN+RW+
Sbjct: 131 GMKLFVYSPLPESLSDEAQKAQLKRMLDLKVNPIDGLSSKWDYENNRWK 179

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469969|gb|EFX80947.1| hypothetical protein DAPPUDRAFT_230889 [Daphnia pulex]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 43  GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYR 102
           GNRE+VG G NG   Y D V  P PAIRYK    D+ +L+EKEKG WN L+ EEKK LYR
Sbjct: 46  GNREIVGFGMNGQPNYIDRVDFPLPAIRYKEVTPDIQVLKEKEKGDWNKLTIEEKKALYR 105

Query: 103 ASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWE 162
           ASF QTFAE       P  E+   VG S++  +++++ Y ++K +   PLP T  PE  +
Sbjct: 106 ASFCQTFAEIKA----PTGEWKSVVGFSLIACSLAMWIYIWMKKYVYAPLPKTFAPEWQQ 161

Query: 163 NTVTKMIQLQWNPITGMASKWDYENDRWR 191
             + +M+ +Q  PI G+ASK+DYE  RW+
Sbjct: 162 AQLERMLDMQIGPIEGLASKYDYEKGRWK 190

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|282158083|ref|NP_001164085.1| cytochrome c oxidase subunit IV [Tribolium castaneum] gi|270011048|gb|EFA07496.1| hypothetical protein TcasGA2_TC009512 [Tribolium castaneum]

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 24  HAIVQQKSV--STLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLL 81
            A+  QK++  ++++ +    GNRE+VG G NG   Y D V  P PAIR+K    D+  L
Sbjct: 9   RALPVQKTLGRASMSDMRSIIGNREIVGFGFNGQPNYADRVDFPLPAIRWKENTPDIQAL 68

Query: 82  REKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYY 141
           REKEKG W  L+ EEKK LYRASF QTFAE       P  E+   VG+S V++A++L+ +
Sbjct: 69  REKEKGDWRKLTIEEKKALYRASFCQTFAEMK----APTGEWKSIVGISFVLVAIALWGF 124

Query: 142 AFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
             +K F   PLP +   E     + ++I LQ NP+ G++SKWDYE D W+
Sbjct: 125 YGMKTFVYAPLPESFNEENRRAQLRRIIDLQINPVQGLSSKWDYEKDDWK 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255710185|gb|ACU30912.1| cytochrome c oxidase subunit IV/COX5b [Ochlerotatus triseriatus]

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 101/170 (59%), Gaps = 5/170 (2%)

Query: 23  RHAIVQQKSVSTLTRLF-PFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLL 81
           R+A+ Q+  V   + L     G REVVGHG NG+  Y D V  P PAIR+K    D+  L
Sbjct: 26  RNALRQKMGVRYSSDLITQKIGKREVVGHGWNGLPVYADRVDYPMPAIRFKEVTPDVQAL 85

Query: 82  REKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYY 141
           REKEKG W  LS +EKK LYRASF QTFAE      YP  E+   +GL ++V+++S+   
Sbjct: 86  REKEKGDWKKLSVQEKKALYRASFCQTFAEI----KYPTGEWKMHIGLGLIVMSMSIVTM 141

Query: 142 AFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
             +KAF    LP T   E  +  +  ++ L  NPITG++SKWDY  D+W+
Sbjct: 142 LLMKAFVYDELPVTFDEEHHKAQLKGVLDLGVNPITGLSSKWDYYYDKWK 191

Source: Ochlerotatus triseriatus

Species: Ochlerotatus triseriatus

Genus: Ochlerotatus

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110456545|gb|ABG74722.1| cytochrome c oxidase polypeptide IV-like protein, partial [Diaphorina citri]

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 95/154 (61%), Gaps = 5/154 (3%)

Query: 39  FPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKK 98
           F F  NREVVG+G NG   Y DN + P+P+IR+K    +L  L++KEKG W  L+ EEKK
Sbjct: 5   FDFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKK 64

Query: 99  MLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFL-KAFFLPPLPATMT 157
            LYRASF QTF E       P  E+ G+ G++ +V+ VSL  Y  + K    P    T++
Sbjct: 65  TLYRASFAQTFVEMNA----PTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLS 120

Query: 158 PEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
            E  +  + KMI L+WNPITG ASKWDYE + W+
Sbjct: 121 EEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWK 154

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
FB|FBgn0033020	176	CG10396 [Drosophila melanogast	0.346	0.818	0.425	6.6e-26
FB|FBgn0032833	182	CoIV "Cytochrome c oxidase sub	0.368	0.840	0.385	3.3e-24
WB|WBGene00012354	175	W09C5.8 [Caenorhabditis elegan	0.344	0.817	0.367	8.9e-18
ZFIN|ZDB-GENE-030131-5175	169	cox4i1 "cytochrome c oxidase s	0.320	0.786	0.340	5.5e-17
UNIPROTKB|P13073	169	COX4I1 "Cytochrome c oxidase s	0.383	0.940	0.325	9.4e-16
ZFIN|ZDB-GENE-040426-1775	177	cox4i2 "cytochrome c oxidase s	0.349	0.819	0.313	3.4e-15
RGD|68374	169	Cox4i1 "cytochrome c oxidase s	0.383	0.940	0.295	4.4e-15
MGI|MGI:88473	169	Cox4i1 "cytochrome c oxidase s	0.383	0.940	0.289	9.4e-15
UNIPROTKB|Q96KJ9	171	COX4I2 "Cytochrome c oxidase s	0.257	0.625	0.351	2.6e-14
UNIPROTKB|Q5ZJV5	171	COX4I1 "Uncharacterized protei	0.313	0.760	0.328	5.6e-14

FB|FBgn0033020 CG10396 [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 63/148 (42%), Positives = 87/148 (58%)

Query:    44 NREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRA 103
             +R+VVGHG NG   Y D+  CPFPAIRY+    +L  LREKE   W  LS +EKK LYR 
Sbjct:    33 DRQVVGHGINGRPIYFDSPDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRY 92

Query:   104 SFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWEN 163
             SF QT+AEF +H   P  E+   +G+++ ++++               LP T   E    
Sbjct:    93 SFCQTYAEF-QH-ITP--EWKMCLGVALWLVSIGIAISITMKTVLYGKLPDTFNDERQSA 148

Query:   164 TVTKMIQLQWNPITGMASKWDYENDRWR 191
              + ++IQLQ NPITG+ASKW Y  ++W+
Sbjct:   149 QLRRIIQLQMNPITGLASKWCYRENKWK 176

GO:0005739 "mitochondrion" evidence=ISS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS

FB|FBgn0032833 CoIV "Cytochrome c oxidase subunit IV" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 62/161 (38%), Positives = 92/161 (57%)

Query:    31 SVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWN 90
             +V TL ++    G RE+VG+G NG A Y D V  P PA+R++   +++  LR KE+G W 
Sbjct:    29 AVHTLDKI----GKREIVGYGWNGTACYADRVDYPLPAVRFREPTNEINALRAKEQGDWK 84

Query:    91 ALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXP 150
              LS +E K LYRASF QT AE  + G+    E+   +G+S++  A +             
Sbjct:    85 KLSTQEIKALYRASFCQTIAE-VQAGS---GEWKLHLGVSLLFCAAAIWVAVLMNIFVYD 140

Query:   151 PLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
              LP T   E  +  + ++I L+ NP+TG+ SKWDYEN +W+
Sbjct:   141 ELPVTFDEEHQKAQLQRIIDLEINPVTGLTSKWDYENKKWK 181

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

WB|WBGene00012354 W09C5.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 220 (82.5 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 54/147 (36%), Positives = 77/147 (52%)

Query:    45 REVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRAS 104
             RE+VG+G NG   Y D +   +PAIR++  DS +  +R KE+  W  LS EEKK+LYR S
Sbjct:    33 RELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLLYRYS 92

Query:   105 FRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENT 164
             FRQT +EF     Y   + + +V LS  V+ +             P LP T   E  E  
Sbjct:    93 FRQTLSEFEAPTGY--WKVISAVILS--VLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQ 148

Query:   165 VTKMIQLQWNPITGMASKWDYENDRWR 191
             V + + L+     G  + +DYEN +W+
Sbjct:   149 VERALVLEKGQFLGAPTHYDYENKKWK 175

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=IMP

ZFIN|ZDB-GENE-030131-5175 cox4i1 "cytochrome c oxidase subunit IV isoform 1" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 5.5e-17, P = 5.5e-17
 Identities = 47/138 (34%), Positives = 72/138 (52%)

Query:    55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
             + AY D    P P I++ +   +D   L+EKEKG W ALSKEEK  LYR SF+++FAE  
Sbjct:    35 LPAYFDRRESPLPEIKFVQQLSADQKSLKEKEKGSWAALSKEEKIALYRISFKESFAEMN 94

Query:   114 RHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTKMIQLQW 173
             +       E+   V      + ++              +P T  PE  +  + +M+ ++ 
Sbjct:    95 QGSG----EWKSVVAGIFFFVGLTGLVVLWQRKYVYGDVPNTFDPEYKQKEIQRMLDMRI 150

Query:   174 NPITGMASKWDYENDRWR 191
             NP+ G A+KWDYEN+ W+
Sbjct:   151 NPVQGFAAKWDYENNAWK 168

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IDA

UNIPROTKB|P13073 COX4I1 "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 9.4e-16, P = 9.4e-16
 Identities = 55/169 (32%), Positives = 85/169 (50%)

Query:    25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
             ++V ++++ST   +     +  VV      + AY D    P P + + K   +    L+E
Sbjct:     8 SLVGKRAISTSVCV---RAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKE 64

Query:    84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
             KEK  W++LS +EK  LYR  F+++FAE  R G+    E+   VG +M  I  +      
Sbjct:    65 KEKASWSSLSMDEKVELYRIKFKESFAEMNR-GS---NEWKTVVGGAMFFIGFTALVIMW 120

Query:   144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
                    PLP +   E W    TK M+ ++ NPI G+ASKWDYE + W+
Sbjct:   121 QKHYVYGPLPQSFDKE-WVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-040426-1775 cox4i2 "cytochrome c oxidase subunit IV isoform 2" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 47/150 (31%), Positives = 69/150 (46%)

Query:    43 GNREVVGHGRNGIAAYGDNVLCPFPAIRYK-VFDSDLLLLREKEKGHWNALSKEEKKMLY 101
             G+ +V+         Y D +  P P   YK +  +    L++KEKG WN LS EEK  LY
Sbjct:    32 GHGDVIEQADMSRPMYSDRLDTPLPDRPYKDILSAADKSLKQKEKGPWNNLSNEEKIALY 91

Query:   102 RASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGW 161
             R  F +TFAE  +    P  E+       +  I  +            PP P T   E  
Sbjct:    92 RIMFNETFAEMKK----PTGEWKTVTAGILFFIGFTGLVVLWQRLYVYPPQPHTFGDEWQ 147

Query:   162 ENTVTKMIQLQWNPITGMASKWDYENDRWR 191
                + +M+ ++ NP+ G A+KWDYE  +W+
Sbjct:   148 AKQIKRMLDMKINPVQGFAAKWDYEKGQWK 177

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|68374 Cox4i1 "cytochrome c oxidase subunit IV isoform 1" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 4.4e-15, P = 4.4e-15
 Identities = 50/169 (29%), Positives = 84/169 (49%)

Query:    25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
             +++ ++++ST   L     +  VV      + +Y D    P P + + K+  +    L+E
Sbjct:     8 SLIGKRAISTSVCL---RAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKE 64

Query:    84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
             KEK  W++LS++EK  LYR  F ++FAE  + G     E+   VGL+M  I  +      
Sbjct:    65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNK-GT---NEWKTVVGLAMFFIGFTALVLIW 120

Query:   144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
                    P+P T   + W    TK M+ ++ NPI G ++KWDY  + W+
Sbjct:   121 EKSYVYGPIPHTFDRD-WVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

MGI|MGI:88473 Cox4i1 "cytochrome c oxidase subunit IV isoform 1" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 9.4e-15, P = 9.4e-15
 Identities = 49/169 (28%), Positives = 82/169 (48%)

Query:    25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
             +++ ++++ST   L     +  VV         Y D    P P + +  +  +    L+E
Sbjct:     8 SLIGKRAISTSVCL---RAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKE 64

Query:    84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
             KEK  W++LS++EK  LYR  F ++FAE  R G     E+   VG++M  I  +      
Sbjct:    65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNR-GT---NEWKTVVGMAMFFIGFTALVLIW 120

Query:   144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
                    P+P T   + W    TK M+ ++ NPI G ++KWDY+ + W+
Sbjct:   121 EKSYVYGPIPHTFDRD-WVAMQTKRMLDMKANPIQGFSAKWDYDKNEWK 168

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q96KJ9 COX4I2 "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 39/111 (35%), Positives = 56/111 (50%)

Query:    81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXX 140
             L+EKEKG W  L+  EK  LYR  F +TFAE  R       E+   +G     I  +   
Sbjct:    64 LKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRS----NEWKTVMGCVFFFIGFAALV 119

Query:   141 XXXXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
                      PP P T+T E     + +M+ ++ NP+ G+AS+WDYE  +W+
Sbjct:   120 IWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWK 170

GO:0004129 "cytochrome-c oxidase activity" evidence=IDA

GO:0045333 "cellular respiration" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IC

GO:0006091 "generation of precursor metabolites and energy" evidence=NAS

UNIPROTKB|Q5ZJV5 COX4I1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 45/137 (32%), Positives = 69/137 (50%)

Query:    57 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
             AY D    P P + + K   +    L+EKEK  W ALS +EK  LYR  F +++AE  + 
Sbjct:    39 AYVDRRDVPLPEVAFVKELSAQQKALKEKEKASWTALSVDEKVELYRIKFNESYAEMNK- 97

Query:   116 GAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK-MIQLQWN 174
             G       LG V   +  + VS             P+P T + E W +  TK M+ ++ N
Sbjct:    98 GTNEWKTVLGGV---LFFLGVSGLILIWQKMYMYGPIPHTFSDE-WLSMQTKRMLDMRIN 153

Query:   175 PITGMASKWDYENDRWR 191
             P+ G++++WDYE + W+
Sbjct:   154 PVEGISAQWDYEKNEWK 170

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.9.3	LOW CONFIDENCE prediction!
3rd Layer	1.9.3.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	415
cd00922	136	cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase su	2e-35
pfam02936	142	pfam02936, COX4, Cytochrome c oxidase subunit IV	7e-35
cd00922	136	cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase su	1e-31
pfam02936	142	pfam02936, COX4, Cytochrome c oxidase subunit IV	4e-31

>gnl|CDD|238462 cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase subunit IV

 Score =  127 bits (320), Expect = 2e-35
 Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 46  EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           EVVG+G N +  Y D    P P IR++   +++  LREKEKG W  L+ EEKK LYR SF
Sbjct: 1   EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISF 60

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
            +T  E          E+    G  +  I ++   +   +AF   P P T T E  E  +
Sbjct: 61  GETGPEMNAPTG----EWKTVFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQL 116

Query: 166 TKMIQLQWNPITGMASKWDY 185
            +M+ ++ NPITG ASKWDY
Sbjct: 117 ERMLDMKVNPITGYASKWDY 136

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform. Length = 136

>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV

 Score =  125 bits (316), Expect = 7e-35
 Identities = 59/145 (40%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 46  EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
            VVG+G NG   Y D      P  R++     ++ LREKEKG W +LS EEKK LYR SF
Sbjct: 1   RVVGYGANGNPTYADLPDRWEPMPRFREQSELIMALREKEKGDWKSLSLEEKKALYRISF 60

Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
            +T  EF      P  E+   +G  +  + +S   +  ++ F  PPLP TM  E  E   
Sbjct: 61  GETGPEFVA----PKGEWKTVLGGVLAGLGISFGLFILMRTFAYPPLPKTMNKEWQEAQN 116

Query: 166 TKMIQLQWNPITGMASKWDYENDRW 190
            +M  L+ NPITG+AS +DYEN  W
Sbjct: 117 ERMKDLKINPITGLASGYDYENKVW 141

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The yeast protein MTC3 appears to be the yeast COX IV subunit. Length = 142

>gnl|CDD|238462 cd00922, Cyt_c_Oxidase_IV, Cytochrome c oxidase subunit IV

 Score =  116 bits (294), Expect = 1e-31
 Identities = 55/155 (35%), Positives = 75/155 (48%), Gaps = 19/155 (12%)

Query: 229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
           EVVG+G N +  Y D    P P IR++   +++  LREKEKG W  L+ EEKK LYR SF
Sbjct: 1   EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISF 60

Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
            +T  E          E+    G  +  I                ++   +   +AF   
Sbjct: 61  GETGPEMNAPTG----EWKTVFGGVLAFIG---------------ITGVIFGLQRAFVYG 101

Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDY 383
           P P T T E  E  + +M+ ++ NPITG ASKWDY
Sbjct: 102 PKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY 136

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform. Length = 136

>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV

 Score =  115 bits (291), Expect = 4e-31
 Identities = 59/160 (36%), Positives = 76/160 (47%), Gaps = 19/160 (11%)

Query: 229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
            VVG+G NG   Y D      P  R++     ++ LREKEKG W +LS EEKK LYR SF
Sbjct: 1   RVVGYGANGNPTYADLPDRWEPMPRFREQSELIMALREKEKGDWKSLSLEEKKALYRISF 60

Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
            +T  EF               G    V+  +   L         +S   +  ++ F  P
Sbjct: 61  GETGPEFVA-----------PKGEWKTVLGGVLAGL--------GISFGLFILMRTFAYP 101

Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRW 388
           PLP TM  E  E    +M  L+ NPITG+AS +DYEN  W
Sbjct: 102 PLPKTMNKEWQEAQNERMKDLKINPITGLASGYDYENKVW 141

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The yeast protein MTC3 appears to be the yeast COX IV subunit. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG4075|consensus	167		100.0
PF02936	142	COX4: Cytochrome c oxidase subunit IV; InterPro: I	100.0
PF02936	142	COX4: Cytochrome c oxidase subunit IV; InterPro: I	100.0
KOG4075|consensus	167		100.0
cd00922	136	Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV.	100.0
cd00922	136	Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV.	100.0
PF06592	73	DUF1138: Protein of unknown function (DUF1138); In	92.73
PF06592	73	DUF1138: Protein of unknown function (DUF1138); In	91.41

>KOG4075|consensus

Probab=100.00  E-value=6.5e-58  Score=414.66  Aligned_cols=166  Identities=37%  Similarity=0.614  Sum_probs=154.6

Q ss_pred             hhhhhhhhcccccccccccCcCCCeeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHh
Q psy2997          22 NRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLY  101 (415)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~ig~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALY  101 (415)
                      ||++..+..-......++++++.|++||+|+||+|+|+||+|+|+|++|++|+++++++||||||+||++||.|||||||
T Consensus         2 l~~~~ts~vg~~~~~~~~~~~a~~~~vg~~~~~~p~y~Drrd~pmP~~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalY   81 (167)
T KOG4075|consen    2 LRTRFTSLVGGVAITGTRDKAAKRQLVGYGDNGLPIYLDRRDYPMPAIRFRELSAEIKALREKEKAPWKQLSTEEKKALY   81 (167)
T ss_pred             cchhHhhhccccceeecchhhhcccccccccccCchhhccccCCCcchhhhcccHHHHHHHHHhcCChhhcCHHHHHHHH
Confidence            34444433222334556788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccchHhhhcCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccc
Q psy2997         102 RASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMAS  181 (415)
Q Consensus       102 riSF~qTfAE~~~hGP~ptGEWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SS  181 (415)
                      |||||||||||++    ++||||+|||+.++|+|+++++.+|++.+||||.|+||++|||+||+|||||+++|||+|++|
T Consensus        82 risF~et~ae~~~----~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~Tf~~Ewq~kq~erml~~~~NPi~Glas  157 (167)
T KOG4075|consen   82 RISFGETFAERNR----GSNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPKTFNKEWQEKQLERMLDLKINPIGGLAS  157 (167)
T ss_pred             HHHhccccccccC----CCCcccchhhHHHHHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHcccCCccCccc
Confidence            9999999999999    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCccc
Q psy2997         182 KWDYENDRWR  191 (415)
Q Consensus       182 kWDYe~k~WK  191 (415)
                      +||||+|+||
T Consensus       158 ~wdye~k~wK  167 (167)
T KOG4075|consen  158 KWDYEEKKWK  167 (167)
T ss_pred             ccChhhhccC
Confidence            9999999998

>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1

Probab=100.00  E-value=1e-57  Score=405.63  Aligned_cols=142  Identities=39%  Similarity=0.656  Sum_probs=113.7

Q ss_pred             eeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCCCccc
Q psy2997          46 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  125 (415)
Q Consensus        46 eVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptGEWK~  125 (415)
                      ||||+|.||.|+|+|+.++|+|++||+++++++++|||||||||++||+|||||||||||||||+||++    |+||||+
T Consensus         1 ~~v~~~~~s~p~y~d~~~~w~p~~~~~~~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~----~~gewk~   76 (142)
T PF02936_consen    1 EVVGYGANSNPSYVDREDRWLPMPRFQEQTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKA----PTGEWKK   76 (142)
T ss_dssp             ----GGGTTS-----BTTBSS-SS---S--HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT-------SHHHH
T ss_pred             CccccccCCCCcccchhcCCCCCcchhhhHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCccccccc----CCcchHH
Confidence            799999999999999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCccc
Q psy2997         126 SVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR  191 (415)
Q Consensus       126 V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WK  191 (415)
                      |+++++++|++|+++|+++|+||+||+|+|||+|||+||+||||+|++|||+|+||+|||+||+||
T Consensus        77 v~~~~~~~i~~s~~l~~~~r~~~~~~~P~T~~~Ew~ea~~~~m~~~~~nPi~G~ss~wdy~~~~wk  142 (142)
T PF02936_consen   77 VFGGVFIFIGFSVLLFIWQRSYVYPPLPHTFSKEWQEAQNERMLDMKVNPITGFSSKWDYEKNEWK  142 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHcCCCCCCCCcCCcCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....

>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1

Probab=100.00  E-value=8.2e-56  Score=393.40  Aligned_cols=142  Identities=39%  Similarity=0.652  Sum_probs=112.9

Q ss_pred             eeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCCCcce
Q psy2997         229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  308 (415)
Q Consensus       229 evvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~gewk~  308 (415)
                      ||||+|.||.|+|.|+.++|+|++||+++++++++|||||||||++||+|||||||||||||||||+++    |+||||+
T Consensus         1 ~~v~~~~~s~p~y~d~~~~w~p~~~~~~~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~----~~gewk~   76 (142)
T PF02936_consen    1 EVVGYGANSNPSYVDREDRWLPMPRFQEQTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKA----PTGEWKK   76 (142)
T ss_dssp             ----GGGTTS-----BTTBSS-SS---S--HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT-------SHHHH
T ss_pred             CccccccCCCCcccchhcCCCCCcchhhhHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCccccccc----CCcchHH
Confidence            799999999999999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             eeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccccccccCcc
Q psy2997         309 GVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRW  388 (415)
Q Consensus       309 v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdYe~~~W  388 (415)
                      |+|+++++|+               +|+++|+++|+|++||+|+|||+||||||+||||++++|||+|+||+||||||+|
T Consensus        77 v~~~~~~~i~---------------~s~~l~~~~r~~~~~~~P~T~~~Ew~ea~~~~m~~~~~nPi~G~ss~wdy~~~~w  141 (142)
T PF02936_consen   77 VFGGVFIFIG---------------FSVLLFIWQRSYVYPPLPHTFSKEWQEAQNERMLDMKVNPITGFSSKWDYEKNEW  141 (142)
T ss_dssp             HHHHHHHHHH---------------HHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE
T ss_pred             HHHHHHHHHH---------------HHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHcCCCCCCCCcCCcCCCCCcC
Confidence            9999999988               9999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q psy2997         389 R  389 (415)
Q Consensus       389 k  389 (415)
                      |
T Consensus       142 k  142 (142)
T PF02936_consen  142 K  142 (142)
T ss_dssp             -
T ss_pred             C
Confidence            7

9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....

>KOG4075|consensus

Probab=100.00  E-value=7.3e-55  Score=394.82  Aligned_cols=150  Identities=40%  Similarity=0.689  Sum_probs=144.6

Q ss_pred             ccCCcCCceeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCC
Q psy2997         221 RLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGA  300 (415)
Q Consensus       221 ~~~~~g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~  300 (415)
                      ..++++.|++||+|+||.|+|+||+|+|+|+||+++.++++++||||||+||++||.||||||||||||||++||++   
T Consensus        18 ~~~~~a~~~~vg~~~~~~p~y~Drrd~pmP~~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~---   94 (167)
T KOG4075|consen   18 TRDKAAKRQLVGYGDNGLPIYLDRRDYPMPAIRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNR---   94 (167)
T ss_pred             cchhhhcccccccccccCchhhccccCCCcchhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccC---
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCCcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccc
Q psy2997         301 YPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASK  380 (415)
Q Consensus       301 ~p~gewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSk  380 (415)
                       +.+|||+++|+.++|+|               +++++.+|++.++|+|+|+||++|||++|+||||++++|||+|+||+
T Consensus        95 -~~~ewKtv~g~~~~f~G---------------l~~~v~l~~~v~vy~~~P~Tf~~Ewq~kq~erml~~~~NPi~Glas~  158 (167)
T KOG4075|consen   95 -GSNEWKTVFGVAGFFLG---------------LTISVILFGKVRVYGPLPKTFNKEWQEKQLERMLDLKINPIGGLASK  158 (167)
T ss_pred             -CCCcccchhhHHHHHHH---------------HHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHcccCCccCcccc
Confidence             99999999999999999               67777788888899999999999999999999999999999999999


Q ss_pred             cccccCccc
Q psy2997         381 WDYENDRWR  389 (415)
Q Consensus       381 wdYe~~~Wk  389 (415)
                      ||||||+||
T Consensus       159 wdye~k~wK  167 (167)
T KOG4075|consen  159 WDYEEKKWK  167 (167)
T ss_pred             cChhhhccC
Confidence            999999998

>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV

Probab=100.00  E-value=4.5e-54  Score=379.93  Aligned_cols=136  Identities=41%  Similarity=0.694  Sum_probs=134.7

Q ss_pred             eeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCCCccc
Q psy2997          46 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  125 (415)
Q Consensus        46 eVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptGEWK~  125 (415)
                      ||||+|.||.|+|+|+.++|+|++||+|+++++++|||||||||++||+||||||||+|||||++||++    |+||||+
T Consensus         1 ~~~~~~~~s~p~y~d~~~~p~p~~~~~e~~~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~----~~~ewk~   76 (136)
T cd00922           1 EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNA----PTGEWKT   76 (136)
T ss_pred             CcccccccCCccccCCCCCCCCcCccccchHHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccC----CCccHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccccc
Q psy2997         126 SVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDY  185 (415)
Q Consensus       126 V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDY  185 (415)
                      |+++++++|++|+++|+++|+|+|+|+|+|||+|||+||+|||+++|+|||||+||+|||
T Consensus        77 v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~ss~~dy  136 (136)
T cd00922          77 VFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY  136 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccccCCcC
Confidence            999999999999999999999999999999999999999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.

>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV

Probab=100.00  E-value=6.3e-52  Score=366.29  Aligned_cols=136  Identities=41%  Similarity=0.689  Sum_probs=133.8

Q ss_pred             eeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCCCcce
Q psy2997         229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  308 (415)
Q Consensus       229 evvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~gewk~  308 (415)
                      ||||+|.||.|.|+|+.++|+|++||+++++++++|||||||||++||++|||||||+|||||+|||++    |+||||.
T Consensus         1 ~~~~~~~~s~p~y~d~~~~p~p~~~~~e~~~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~----~~~ewk~   76 (136)
T cd00922           1 EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNA----PTGEWKT   76 (136)
T ss_pred             CcccccccCCccccCCCCCCCCcCccccchHHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccC----CCccHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999998    9999999


Q ss_pred             eeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCccccccccc
Q psy2997         309 GVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDY  383 (415)
Q Consensus       309 v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdY  383 (415)
                      |+|+++++|+               +|+++|+++|+|+|+|+|+|||+||||||+|||+++++|||||+||+|||
T Consensus        77 v~~~~~~~i~---------------~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~ss~~dy  136 (136)
T cd00922          77 VFGGVLAFIG---------------ITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY  136 (136)
T ss_pred             HHHHHHHHHH---------------HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccccCCcC
Confidence            9999999988               99999999999999999999999999999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.

>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa

Probab=92.73  E-value=0.15  Score=42.17  Aligned_cols=47  Identities=26%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             cchhhHHHHHHHHHH--HHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHH
Q psy2997         124 LGSVGLSMVVIAVSL--FYYAFLKAFFLPPLPATMT-PEGWENTVTKMIQ  170 (415)
Q Consensus       124 K~V~ggvl~~i~is~--~lf~~~r~~vypp~P~Tfs-~EWqeAq~ermi~  170 (415)
                      |.|++.+....+++.  ..|+..+....+-+|+|++ +||.+++.+||..
T Consensus         2 kyIi~al~gsfa~ay~c~~~vs~~K~FGGt~p~Tv~~keW~~aT~~K~qa   51 (73)
T PF06592_consen    2 KYIIGALAGSFAVAYVCDQYVSDKKIFGGTTPHTVSNKEWWKATDKKFQA   51 (73)
T ss_pred             cEEeehHHHHHHHHHHHHHHHhcccccCCCCCCccccHHHHHHHHHHHhh
Confidence            445555554444443  4566666666889999996 5999999999864

The function of this family is unknown.

>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa

Probab=91.41  E-value=0.12  Score=42.66  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=24.8

Q ss_pred             HHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy2997         339 YAFLKAFFLPPLPTTMT-PEGWENTVTKMIQ  368 (415)
Q Consensus       339 ~~~~r~~~~~p~P~Tmt-~Ewqea~~erm~~  368 (415)
                      |+..+..+.+-.|+|++ +||++++.+||..
T Consensus        21 ~vs~~K~FGGt~p~Tv~~keW~~aT~~K~qa   51 (73)
T PF06592_consen   21 YVSDKKIFGGTTPHTVSNKEWWKATDKKFQA   51 (73)
T ss_pred             HHhcccccCCCCCCccccHHHHHHHHHHHhh
Confidence            56666667999999996 5999999999874

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
2y69_D	169	Bovine Heart Cytochrome C Oxidase Re-Refined With M		2e-13
2y69_D	169	Bovine Heart Cytochrome C Oxidase Re-Refined With M		1e-08
1occ_D	147	Structure Of Bovine Heart Cytochrome C Oxidase At T		8e-13
1occ_D	147	Structure Of Bovine Heart Cytochrome C Oxidase At T		8e-09

>pdb|2Y69|D Chain D, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 36  TRLFPFTGNRE------VVGHGR------NGIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
           TR+F   G R       V  HG         + +Y D    P P + + K   +    L+
Sbjct: 4   TRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALK 63
Query: 83  EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXX 142
           EKEK  W++LS +EK  LYR  F+++FAE  R       E+   VG +M  I  +     
Sbjct: 64  EKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLI 119
Query: 143 XXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
                   P+P T   E       +M+ ++  PI G ++KWDY+ + W+
Sbjct: 120 WEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168

>pdb|2Y69|D Chain D, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
           HG+  VV      + +Y D    P P + + K   +    L+EKEK  W++LS +EK  L
Sbjct: 24  HGS--VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVEL 81
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSXXXXXXXX 343
           YR  F+++FAE  R       E+   VG +M  I    + LI  +  H            
Sbjct: 82  YRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLI--WEKHYVYG-------- 127
Query: 344 XXXXXXXXXXXXXEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
                        E W    TK M+ ++  PI G ++KWDY+ + W+
Sbjct: 128 ------PIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168

>pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 147

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Query: 47  VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
           VV      + +Y D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F
Sbjct: 5   VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKF 64
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTV 165
           +++FAE  R       E+   VG +M  I  +             P+P T   E      
Sbjct: 65  KESFAEMNR----STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQT 120
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
            +M+ ++  PI G ++KWDY+ + W+
Sbjct: 121 KRMLDMKVAPIQGFSAKWDYDKNEWK 146

>pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 147

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
           HG+  VV      + +Y D    P P + + K   +    L+EKEK  W++LS +EK  L
Sbjct: 2   HGS--VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVEL 59
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSXXXXXXXX 343
           YR  F+++FAE  R       E+   VG +M  I    + LI  +  H            
Sbjct: 60  YRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLI--WEKHYVYG-------- 105
Query: 344 XXXXXXXXXXXXXEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
                        E W    TK M+ ++  PI G ++KWDY+ + W+
Sbjct: 106 ------PIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 146
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	3e-47
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	2e-44
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	3e-42
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	2e-38

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 169

 Score =  158 bits (402), Expect = 3e-47
 Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 25  AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
           +++ ++++ST   +     +  VV      + +Y D    P P + + K   +    L+E
Sbjct: 8   SLIGRRAISTSVCV---RAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKE 64

Query: 84  KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
           KEK  W++LS +EK  LYR  F+++FAE  R       E+   VG +M  I  +     +
Sbjct: 65  KEKASWSSLSIDEKVELYRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLIW 120

Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
            K +   P+P T   E       +M+ ++  PI G ++KWDY+ + W+
Sbjct: 121 EKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 169

 Score =  151 bits (382), Expect = 2e-44
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 20/172 (11%)

Query: 219 SGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSK 277
           S  +    +  VV      + +Y D    P P + + K   +    L+EKEK  W++LS 
Sbjct: 16  STSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSI 75

Query: 278 EEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLF 337
           +EK  LYR  F+++FAE  R       E+   VG +M  I                 +  
Sbjct: 76  DEKVELYRLKFKESFAEMNR----STNEWKTVVGAAMFFIG---------------FTAL 116

Query: 338 YYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
              + K +   P+P T   E       +M+ ++  PI G ++KWDY+ + W+
Sbjct: 117 LLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ... Length = 147

 Score =  144 bits (365), Expect = 3e-42
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 43  GNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLY 101
            +  VV      + +Y D    P P + + K   +    L+EKEK  W++LS +EK  LY
Sbjct: 1   AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELY 60

Query: 102 RASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGW 161
           R  F+++FAE  R       E+   VG +M  I  +     + K +   P+P T   E  
Sbjct: 61  RLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWV 116

Query: 162 ENTVTKMIQLQWNPITGMASKWDYENDRWR 191
                +M+ ++  PI G ++KWDY+ + W+
Sbjct: 117 AKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 146

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ... Length = 147

 Score =  134 bits (339), Expect = 2e-38
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 226 GNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLY 284
            +  VV      + +Y D    P P + + K   +    L+EKEK  W++LS +EK  LY
Sbjct: 1   AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELY 60

Query: 285 RASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKA 344
           R  F+++FAE  R       E+   VG +M  I                 +     + K 
Sbjct: 61  RLKFKESFAEMNR----STNEWKTVVGAAMFFIG---------------FTALLLIWEKH 101

Query: 345 FFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
           +   P+P T   E       +M+ ++  PI G ++KWDY+ + W+
Sbjct: 102 YVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	100.0
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	100.0
1v54_D	147	Cytochrome C oxidase subunit IV isoform 1; oxidore	100.0
2y69_D	169	Cytochrome C oxidase subunit 4 isoform 1; electron	100.0

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...

Probab=100.00  E-value=1.7e-68  Score=476.38  Aligned_cols=146  Identities=29%  Similarity=0.574  Sum_probs=142.1

Q ss_pred             CCCeeeecccCCcccccccCCCCCCCCccccc-chHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCC
Q psy2997          43 GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDT  121 (415)
Q Consensus        43 g~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~-t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptG  121 (415)
                      |+|||||||+||.|+|+||+|+|+|+|||+++ +++|++|||||||||++||+||||||||||||||||||++    |+|
T Consensus         1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~----p~g   76 (147)
T 1v54_D            1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STN   76 (147)
T ss_dssp             ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCS
T ss_pred             CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC----CCC
Confidence            78999999999999999999999999999998 9999999999999999999999999999999999999999    999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCcccC
Q psy2997         122 EYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRP  192 (415)
Q Consensus       122 EWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WKk  192 (415)
                      |||+|+|+++++||+|+++|+++|+|||+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus        77 ewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe~~~Wkk  147 (147)
T 1v54_D           77 EWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  147 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchhhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=5.6e-68  Score=481.80  Aligned_cols=150  Identities=29%  Similarity=0.552  Sum_probs=142.0

Q ss_pred             ccCcCCCeeeecccCCcccccccCCCCCCCCccccc-chHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCC
Q psy2997          39 FPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGA  117 (415)
Q Consensus        39 ~~~ig~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~-t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP  117 (415)
                      .|.+|+|||||||+||.|+|+||+|||||+|||+++ +++|++|||||||||++||+||||||||||||||||||++   
T Consensus        19 ~~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~---   95 (169)
T 2y69_D           19 VCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR---   95 (169)
T ss_dssp             -------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC---
T ss_pred             eeeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC---
Confidence            467899999999999999999999999999999998 8999999999999999999999999999999999999999   


Q ss_pred             CCCCCccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCcccC
Q psy2997         118 YPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRP  192 (415)
Q Consensus       118 ~ptGEWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WKk  192 (415)
                       |+||||+|+|+++++||+|+++|+++|+|||+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus        96 -ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~SSkwdYe~~~WKk  169 (169)
T 2y69_D           96 -STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  169 (169)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCchhhhccccceeCC
Confidence             99999999999999999999999999999999999999999999999999999999999999999999999997

>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...

Probab=100.00  E-value=1.3e-66  Score=464.28  Aligned_cols=146  Identities=29%  Similarity=0.570  Sum_probs=141.1

Q ss_pred             CCceeeeccccccccccccCCCCCCCCccccC-ChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCC
Q psy2997         226 GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDT  304 (415)
Q Consensus       226 g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~-~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~g  304 (415)
                      |+|||||||+||.|+|+||+|||||+|||++. |++|++|||||||||++||+||||||||||||||||||++    |+|
T Consensus         1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~----p~g   76 (147)
T 1v54_D            1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STN   76 (147)
T ss_dssp             ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCS
T ss_pred             CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC----CCC
Confidence            78999999999999999999999999999988 9999999999999999999999999999999999999999    999


Q ss_pred             CcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccccccc
Q psy2997         305 EYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYE  384 (415)
Q Consensus       305 ewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdYe  384 (415)
                      |||.|+|+++++||               +|+++|+++|+|+++|+|+|||+|||+||+|||+++++|||||+||+||||
T Consensus        77 ewK~v~g~v~~~i~---------------~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe  141 (147)
T 1v54_D           77 EWKTVVGAAMFFIG---------------FTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYD  141 (147)
T ss_dssp             HHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETT
T ss_pred             chhHHHHHHHHHHH---------------HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchh
Confidence            99999999999988               999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccc
Q psy2997         385 NDRWRP  390 (415)
Q Consensus       385 ~~~Wk~  390 (415)
                      ||+|||
T Consensus       142 ~~~Wkk  147 (147)
T 1v54_D          142 KNEWKK  147 (147)
T ss_dssp             TTEECC
T ss_pred             hcccCC
Confidence            999997

>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=2.1e-66  Score=471.47  Aligned_cols=153  Identities=29%  Similarity=0.542  Sum_probs=141.0

Q ss_pred             CCccCCcCCceeeeccccccccccccCCCCCCCCccccC-ChHHHHHHHHhcCChhccCHHHHHHHhhhhcccccccccc
Q psy2997         219 SGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTR  297 (415)
Q Consensus       219 ~~~~~~~g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~-~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~  297 (415)
                      +++.+.+|+|||||||+||.|+|+||+|||||+|||++. |++|++|||||||||++||+||||||||||||||||||++
T Consensus        16 ~~~~~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~   95 (169)
T 2y69_D           16 STSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR   95 (169)
T ss_dssp             ----------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC
T ss_pred             hheeeeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC
Confidence            556667899999999999999999999999999999988 8999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCccc
Q psy2997         298 HGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGM  377 (415)
Q Consensus       298 ~~~~p~gewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~  377 (415)
                          |+||||.|+|+++++||               +|+++|+++|.|+|+|+|+|||+||||||+|||+++++|||||+
T Consensus        96 ----ptgEWK~V~ggv~~~i~---------------~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~  156 (169)
T 2y69_D           96 ----STNEWKTVVGAAMFFIG---------------FTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGF  156 (169)
T ss_dssp             ----CCSHHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTS
T ss_pred             ----CCCchhHHHHHHHHHHH---------------HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCc
Confidence                99999999999999988               99999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcccc
Q psy2997         378 ASKWDYENDRWRP  390 (415)
Q Consensus       378 SSkwdYe~~~Wk~  390 (415)
                      ||+||||||+|||
T Consensus       157 SSkwdYe~~~WKk  169 (169)
T 2y69_D          157 SAKWDYDKNEWKK  169 (169)
T ss_dssp             GGGEETTTTEECC
T ss_pred             hhhhccccceeCC
Confidence            9999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1v54d_	144	f.23.1.1 (D:) Mitochondrial cytochrome c oxidase s	6e-42
d1v54d_	144	f.23.1.1 (D:) Mitochondrial cytochrome c oxidase s	3e-38

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  142 bits (361), Expect = 6e-42
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 57  AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
           +Y D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F+++FAE  R 
Sbjct: 12  SYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRS 71

Query: 116 GAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNP 175
                 E+   VG +M  I  +     + K +   P+P T   E       +M+ ++  P
Sbjct: 72  TN----EWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 127

Query: 176 ITGMASKWDYENDRWR 191
           I G ++KWDY+ + W+
Sbjct: 128 IQGFSAKWDYDKNEWK 143

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (335), Expect = 3e-38
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 20/151 (13%)

Query: 240 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 298
           +Y D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F+++FAE  R 
Sbjct: 12  SYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRS 71

Query: 299 GAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEG 358
                            V+     F+          +     + K +   P+P T   E 
Sbjct: 72  TNE-----------WKTVVGAAMFFI--------GFTALLLIWEKHYVYGPIPHTFEEEW 112

Query: 359 WENTVTKMIQLQWNPITGMASKWDYENDRWR 389
                 +M+ ++  PI G ++KWDY+ + W+
Sbjct: 113 VAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1v54d_	144	Mitochondrial cytochrome c oxidase subunit IV {Cow	100.0
d1v54d_	144	Mitochondrial cytochrome c oxidase subunit IV {Cow	100.0

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-63  Score=437.75  Aligned_cols=142  Identities=31%  Similarity=0.610  Sum_probs=138.2

Q ss_pred             eeecccCCcccccccCCCCCCCCcc-cccchHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCCCccc
Q psy2997          47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  125 (415)
Q Consensus        47 VVG~G~ng~p~Y~Dr~d~P~Pairf-~E~t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptGEWK~  125 (415)
                      ||-.-+.+.|+|+||+|+|+|+||| +|++++|+||||||||||++||+||||||||||||||||||++    |+||||+
T Consensus         2 v~~~~~~~~P~Y~D~~d~P~P~i~~~~e~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~----p~gewK~   77 (144)
T d1v54d_           2 VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STNEWKT   77 (144)
T ss_dssp             CCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCSHHHH
T ss_pred             ccccccCCCccccCCCCCCCCCchhhhcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccC----CCCchhH
Confidence            5556678999999999999999998 7889999999999999999999999999999999999999999    9999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCcccC
Q psy2997         126 SVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRP  192 (415)
Q Consensus       126 V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WKk  192 (415)
                      |+|+++++||+|+++|+++|+|||||+|+|||+|||+||+|||+++++|||||+||+||||||+|||
T Consensus        78 v~g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~erm~~~~~nPitG~SSkwDYe~~~WKk  144 (144)
T d1v54d_          78 VVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK  144 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCccccccccccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Mitochondrial cytochrome c oxidase subunit IV
family: Mitochondrial cytochrome c oxidase subunit IV
domain: Mitochondrial cytochrome c oxidase subunit IV
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-61  Score=426.23  Aligned_cols=142  Identities=31%  Similarity=0.606  Sum_probs=137.2

Q ss_pred             eeeccccccccccccCCCCCCCCcc-ccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCCCcce
Q psy2997         230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG  308 (415)
Q Consensus       230 vvg~g~ng~p~Y~D~~d~P~Pair~-k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~gewk~  308 (415)
                      ||---+++.|+|+||+|||+|+||| ++.|++|++|||||||||++||+||||||||||||||||||++    |+||||.
T Consensus         2 v~~~~~~~~P~Y~D~~d~P~P~i~~~~e~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~----p~gewK~   77 (144)
T d1v54d_           2 VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STNEWKT   77 (144)
T ss_dssp             CCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCSHHHH
T ss_pred             ccccccCCCccccCCCCCCCCCchhhhcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccC----CCCchhH
Confidence            4556678999999999999999998 6889999999999999999999999999999999999999999    9999999


Q ss_pred             eeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccccccccCcc
Q psy2997         309 GVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRW  388 (415)
Q Consensus       309 v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdYe~~~W  388 (415)
                      |+|+++++||               +|+++|+++|+|++||+|+|||+|||+||+|||+++++|||||+||+||||||+|
T Consensus        78 v~g~~~~~i~---------------~s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~erm~~~~~nPitG~SSkwDYe~~~W  142 (144)
T d1v54d_          78 VVGAAMFFIG---------------FTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEW  142 (144)
T ss_dssp             HHHHHHHHHH---------------HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE
T ss_pred             HHHHHHHHHH---------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCcccccccccccc
Confidence            9999999988               9999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy2997         389 RP  390 (415)
Q Consensus       389 k~  390 (415)
                      ||
T Consensus       143 Kk  144 (144)
T d1v54d_         143 KK  144 (144)
T ss_dssp             CC
T ss_pred             CC
Confidence            97