Psyllid ID: psy3002

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRASVG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccHHHHccccHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHccccccHHHHHHHcccccccEEEEcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEccccccccHHcccccHHHHcHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MSDQQIYMKRLLTKYLERLSTIAGSlincgpvlswmeldnrgRRLLGkcfwnslshffmpeecplgdqevsliscpslplcitrhtfdedripdlytddtivQDIHSVASLLKMYFrelpnplctyqlYHSFVGAVQQSKLQDQLTQMREtveklppphyrTLEYLIGHLSRvaahgdktgmtARNVAIVWapnllrckeleyggVAALQGVGVQAVVTEFLVVYYAAIfdkknprasvg
Flexible Loop (DISEMBL)
MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMREtveklpppHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAifdkknprasvg
Low Complexity Region (SEG)
MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYggvaalqgvgvqavvTEFLVVYYAAIFDKKNPRASVG
Disordered region (IsUnstruct)
*****IYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQS***************LPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFD*********
Disordered Region (DISOPRED)
************TKYLERLSTI***********SWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF**********
Disordered Region (DISEMBL)
MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRASVG
Disordered Region (DISPRO)
**DQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRASVG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9VIS1	1843	GTPase-activating protein	yes	N/A	0.612	0.079	0.633	7e-49
Q80YF9	1305	Rho GTPase-activating pro	yes	N/A	0.612	0.112	0.543	2e-40
O14559	1287	Rho GTPase-activating pro	no	N/A	0.612	0.114	0.543	2e-40
Q6GPD0	1940	Rho GTPase-activating pro	N/A	N/A	0.620	0.076	0.509	9e-40
Q811P8	2089	Rho GTPase-activating pro	no	N/A	0.620	0.071	0.509	2e-38
A7KAX9	2087	Rho GTPase-activating pro	no	N/A	0.608	0.069	0.513	3e-38
A6X8Z5	1425	Rho GTPase-activating pro	no	N/A	0.637	0.107	0.509	4e-37
Q2M1Z3	1444	Rho GTPase-activating pro	no	N/A	0.629	0.104	0.509	5e-37
Q7Z6I6	1101	Rho GTPase-activating pro	no	N/A	0.608	0.132	0.473	2e-31
Q640N3	1101	Rho GTPase-activating pro	no	N/A	0.608	0.132	0.466	8e-31

>sp|Q9VIS1|CDGAP_DROME GTPase-activating protein CdGAPr OS=Drosophila melanogaster GN=CdGAPr PE=1 SV=2

 Score =  194 bits (492), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/150 (63%), Positives = 116/150 (77%), Gaps = 3/150 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ--QSKL 141
           R  FDE+R+PDL   + + QDIH+V+SLLKMYFRELPNPLCTYQLY +FV A+Q    + 
Sbjct: 471 RRAFDEERVPDLGNPE-MKQDIHAVSSLLKMYFRELPNPLCTYQLYDNFVEAIQVKADEA 529

Query: 142 QDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201
            ++L  M+ETV KLPPPHYRTL+YL  HL +V+ H  +TGMT +N+AIVWAPNLLR   L
Sbjct: 530 DERLRLMKETVLKLPPPHYRTLKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPAL 589

Query: 202 EYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
           E GGVAAL+GVGVQAVVTE+L+     IFD
Sbjct: 590 ESGGVAALRGVGVQAVVTEYLIRNCHNIFD 619

Probably functions as a GTPase-activating protein (GAP) for RAC1 and/or CDC42. Required for optic stalk formation.
Drosophila melanogaster (taxid: 7227)

>sp|Q80YF9|RHG33_MOUSE Rho GTPase-activating protein 33 OS=Mus musculus GN=Arhgap33 PE=1 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 4/151 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct: 386 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 444

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE 
Sbjct: 445 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELES 504

Query: 204 ---GGVAALQGVGVQAVVTEFLVVYYAAIFD 231
              GG AA + V VQ+VV EFL+ +   +F 
Sbjct: 505 VGLGGAAAFREVRVQSVVVEFLLTHVEVLFS 535

May be involved in several stages of intracellular trafficking (By similarity). Could play an important role in the regulation of glucose transport by insulin. May act as a downstream effector of RHOQ/TC10 in the regulation of insulin-stimulated glucose transport.

Mus musculus (taxid: 10090)

>sp|O14559|RHG33_HUMAN Rho GTPase-activating protein 33 OS=Homo sapiens GN=ARHGAP33 PE=1 SV=2

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/151 (54%), Positives = 107/151 (70%), Gaps = 4/151 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct: 362 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 420

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE 
Sbjct: 421 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELES 480

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
              GG AA + V VQ+VV EFL+ +   +F 
Sbjct: 481 VGMGGAAAFREVRVQSVVVEFLLTHVDVLFS 511

May be involved in several stages of intracellular trafficking. Could play an important role in the regulation of glucose transport by insulin. May act as a downstream effector of RHOQ/TC10 in the regulation of insulin-stimulated glucose transport.

Homo sapiens (taxid: 9606)

>sp|Q6GPD0|RHG32_XENLA Rho GTPase-activating protein 32 OS=Xenopus laevis GN=arhgap32 PE=2 SV=1

 Score =  163 bits (413), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 107/153 (69%), Gaps = 4/153 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD ++IPDL T D  +QDIH V SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 422 RHEFDSEQIPDL-TKDVYIQDIHCVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAASDEE 480

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ + +++LPPPHYRTLE+L+ HLSR+A +   T M  +N+AIVWAPNLLR K++E 
Sbjct: 481 RLVKIHDVIQQLPPPHYRTLEFLMRHLSRLATYCSITNMHTKNLAIVWAPNLLRSKQIES 540

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
             + G AA   V +Q+VV EF++ +   +F  K
Sbjct: 541 ACFSGTAAFMEVRIQSVVVEFILNHVEVLFSAK 573

GTPase-activating protein (GAP) promoting GTP hydrolysis on RHOA, CDC42 and RAC1 small GTPases.

Xenopus laevis (taxid: 8355)

>sp|Q811P8|RHG32_MOUSE Rho GTPase-activating protein 32 OS=Mus musculus GN=Arhgap32 PE=1 SV=2

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 107/153 (69%), Gaps = 4/153 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 419 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 477

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E 
Sbjct: 478 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 537

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
             + G AA   V +Q+VV EF++ +   +F  K
Sbjct: 538 ACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGK 570

GTPase-activating protein (GAP) promoting GTP hydrolysis on RHOA, CDC42 and RAC1 small GTPases. May be involved in the differentiation of neuronal cells during the formation of neurite extensions. Involved in NMDA receptor activity-dependent actin reorganization in dendritic spines. May mediate cross-talks between Ras- and Rho-regulated signaling pathways in cell growth regulation. Isoform 2 has higher GAP activity.

Mus musculus (taxid: 10090)

>sp|A7KAX9|RHG32_HUMAN Rho GTPase-activating protein 32 OS=Homo sapiens GN=ARHGAP32 PE=1 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 106/150 (70%), Gaps = 4/150 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 419 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 477

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E 
Sbjct: 478 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 537

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
             + G AA   V +Q+VV EF++ +   +F
Sbjct: 538 ACFSGTAAFMEVRIQSVVVEFILNHVDVLF 567

GTPase-activating protein (GAP) promoting GTP hydrolysis on RHOA, CDC42 and RAC1 small GTPases. May be involved in the differentiation of neuronal cells during the formation of neurite extensions. Involved in NMDA receptor activity-dependent actin reorganization in dendritic spines. May mediate cross-talks between Ras- and Rho-regulated signaling pathways in cell growth regulation. Isoform 2 has higher GAP activity.

Homo sapiens (taxid: 9606)

>sp|A6X8Z5|RHG31_MOUSE Rho GTPase-activating protein 31 OS=Mus musculus GN=Arhgap31 PE=1 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 102/157 (64%), Gaps = 4/157 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  F  D+ PDL T +  +QDIH V SL K+YFRELPNPL TY+LY  F  AV     + 
Sbjct: 68  RQEFGSDQCPDL-TREVYLQDIHCVGSLCKLYFRELPNPLLTYELYEKFTEAVSHRPEEG 126

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           QL +++  + +LPPPHYRTLEYLI HL+ +A+   KT M ARN+A+VWAPNLLR K++E 
Sbjct: 127 QLARIQNVILELPPPHYRTLEYLIRHLAHIASFSSKTNMHARNLALVWAPNLLRSKKIEA 186

Query: 204 ---GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA 237
               G AA   V VQ VV EF++ +   IF+   P A
Sbjct: 187 TICNGDAAFLAVRVQQVVIEFILNHADQIFNGGAPGA 223

Functions as a GTPase-activating protein (GAP) for RAC1 and CDC42. Required for cell spreading, polarized lamellipodia formation and cell migration.

Mus musculus (taxid: 10090)

>sp|Q2M1Z3|RHG31_HUMAN Rho GTPase-activating protein 31 OS=Homo sapiens GN=ARHGAP31 PE=1 SV=2

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/155 (50%), Positives = 101/155 (65%), Gaps = 4/155 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  F  D+ PDL T +  +QDIH V SL K+YFRELPNPL TY+LY  F  AV     + 
Sbjct: 68  RQEFGSDQCPDL-TREVYLQDIHCVGSLCKLYFRELPNPLLTYELYEKFTEAVSHCPEEG 126

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           QL +++  +++LPP HYRTLEYLI HL+ +A+   KT M ARN+A+VWAPNLLR KE+E 
Sbjct: 127 QLARIQNVIQELPPSHYRTLEYLIRHLAHIASFSSKTNMHARNLALVWAPNLLRSKEIEA 186

Query: 204 ---GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNP 235
               G AA   V VQ VV EF++ +   IF+   P
Sbjct: 187 TGCNGDAAFLAVRVQQVVIEFILNHVDQIFNNGAP 221

Functions as a GTPase-activating protein (GAP) for RAC1 and CDC42. Required for cell spreading, polarized lamellipodia formation and cell migration.

Homo sapiens (taxid: 9606)

>sp|Q7Z6I6|RHG30_HUMAN Rho GTPase-activating protein 30 OS=Homo sapiens GN=ARHGAP30 PE=1 SV=3

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/150 (47%), Positives = 99/150 (66%), Gaps = 4/150 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  F+ +R PDL  D   +QDIH V+SL K YFRELP+PL TY+LY  F  AV      +
Sbjct: 67  RQEFESERKPDLRRD-VYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPE 125

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ E + +LP P+YRTLE+L+ HL  +A+   +T M ARN+AIVWAPNLLR K++E 
Sbjct: 126 RLVKILEVLRELPVPNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEA 185

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
             + G AA   V VQ++V EF++ +   +F
Sbjct: 186 SGFNGTAAFMEVRVQSIVVEFILTHVDQLF 215

GTPase-activating protein (GAP) for RAC1 and RHOA, but not for CDC42.

Homo sapiens (taxid: 9606)

>sp|Q640N3|RHG30_MOUSE Rho GTPase-activating protein 30 OS=Mus musculus GN=Arhgap30 PE=2 SV=3

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 99/150 (66%), Gaps = 4/150 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  F+ +R PDL  D   +QDIH V+SL K YFRELP+PL TY+LY  F  AV      +
Sbjct: 67  RQEFETERKPDLRRD-VYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVAVQLEPE 125

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
           +L ++ E +++LP  +YRTLE+L+ HL  +A+   +T M ARN+AIVWAPNLLR K++E 
Sbjct: 126 RLVKILEVLQELPIQNYRTLEFLMRHLVHMASFSAQTNMHARNLAIVWAPNLLRSKDIEA 185

Query: 203 --YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
             + G AA   V VQ++V EF++ +   +F
Sbjct: 186 SGFNGTAAFMEVRVQSIVVEFILTHVDQLF 215

GTPase-activating protein (GAP) for RAC1 and RHOA, but not for CDC42.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
345479001	1284	PREDICTED: hypothetical protein LOC10012	0.612	0.114	0.775	9e-63
383858975	1541	PREDICTED: uncharacterized protein LOC10	0.612	0.095	0.775	2e-61
66547356	1581	PREDICTED: hypothetical protein LOC55226	0.612	0.092	0.768	5e-61
242012537	1603	CDC42 GTPase-activating protein, putativ	0.65	0.097	0.700	5e-61
380029139	1605	PREDICTED: uncharacterized protein LOC10	0.612	0.091	0.768	6e-61
307177146	1552	Rho/Cdc42/Rac GTPase-activating protein	0.612	0.094	0.761	1e-60
340723004	1577	PREDICTED: hypothetical protein LOC10064	0.612	0.093	0.761	1e-60
350423677	1578	PREDICTED: hypothetical protein LOC10074	0.612	0.093	0.761	1e-60
307207017	1586	GTPase-activating protein CdGAPr [Harpeg	0.612	0.092	0.755	3e-60
322803228	1533	hypothetical protein SINV_80213 [Solenop	0.612	0.095	0.755	3e-60

>gi|345479001|ref|XP_001606950.2| PREDICTED: hypothetical protein LOC100123325 [Nasonia vitripennis]

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FDEDR+P L+ D  I+QDIHSVASLLKMYFRELPNPLCTYQLY SFVGAVQ +  Q+
Sbjct: 369 RHAFDEDRLPALHADQAILQDIHSVASLLKMYFRELPNPLCTYQLYSSFVGAVQSTTDQE 428

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L++MR+ V KLPPPHYRTLEYL+ HL RVA+ G +TGMTARNVAIVWAPNLLRCKELE 
Sbjct: 429 RLSRMRDAVRKLPPPHYRTLEYLMRHLVRVASRGQQTGMTARNVAIVWAPNLLRCKELEV 488

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFL+ Y   IF
Sbjct: 489 GGVAALQGVGVQAVVTEFLICYAELIF 515

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858975|ref|XP_003704974.1| PREDICTED: uncharacterized protein LOC100875192 [Megachile rotundata]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ S   +
Sbjct: 349 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQASTDAE 408

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MRETV KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 409 RLRRMRETVRKLPPPHYRTLEYLMRHLVRVAARGAETGMTPRNVAIVWAPNLLRCKELEV 468

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 469 GGVAALQGVGVQAVVTEFLVCYAELIF 495

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66547356|ref|XP_624644.1| PREDICTED: hypothetical protein LOC552265 [Apis mellifera]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ S   +
Sbjct: 349 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQASTDAE 408

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+TV KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 409 RLRRMRDTVRKLPPPHYRTLEYLMRHLVRVAARGAETGMTPRNVAIVWAPNLLRCKELEV 468

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 469 GGVAALQGVGVQAVVTEFLVCYAELIF 495

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012537|ref|XP_002426989.1| CDC42 GTPase-activating protein, putative [Pediculus humanus corporis] gi|212511218|gb|EEB14251.1| CDC42 GTPase-activating protein, putative [Pediculus humanus corporis]

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 130/157 (82%), Gaps = 1/157 (0%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQ 142
           R+TFDEDR+P LY D  I+QD+HSVASLLKMYFRELPNPLCTYQLY+ FVGA+Q Q K  
Sbjct: 365 RNTFDEDRVPALYEDQAILQDVHSVASLLKMYFRELPNPLCTYQLYYQFVGAIQTQDKEN 424

Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
            +L ++R+ V+KLPPPHYRTL+YL  HL+RV+  G +TGMT+RN+AIVWAPNLLRCKELE
Sbjct: 425 ARLLKIRDVVQKLPPPHYRTLKYLTKHLARVSEKGAETGMTSRNIAIVWAPNLLRCKELE 484

Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRASV 239
            GGVAALQGVGVQAVVTEFL+ Y   IF  + P  +V
Sbjct: 485 VGGVAALQGVGVQAVVTEFLICYADLIFSDQLPNFNV 521

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029139|ref|XP_003698239.1| PREDICTED: uncharacterized protein LOC100863945 [Apis florea]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ S   +
Sbjct: 359 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQASTDAE 418

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+TV KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 419 RLRRMRDTVRKLPPPHYRTLEYLMRHLVRVAARGAETGMTPRNVAIVWAPNLLRCKELEV 478

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 479 GGVAALQGVGVQAVVTEFLVCYAELIF 505

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177146|gb|EFN66379.1| Rho/Cdc42/Rac GTPase-activating protein RICS [Camponotus floridanus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 126/147 (85%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ S   +
Sbjct: 351 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVNAVQASSDAE 410

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+ V KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 411 RLRRMRDAVRKLPPPHYRTLEYLMRHLVRVAARGTETGMTPRNVAIVWAPNLLRCKELEV 470

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 471 GGVAALQGVGVQAVVTEFLVCYAELIF 497

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723004|ref|XP_003399889.1| PREDICTED: hypothetical protein LOC100646797 [Bombus terrestris]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ +   +
Sbjct: 349 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQANTDAE 408

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+TV KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 409 RLRRMRDTVRKLPPPHYRTLEYLMRHLVRVAARGAETGMTPRNVAIVWAPNLLRCKELEV 468

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 469 GGVAALQGVGVQAVVTEFLVCYAELIF 495

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423677|ref|XP_003493556.1| PREDICTED: hypothetical protein LOC100743521 [Bombus impatiens]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ +   +
Sbjct: 349 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQANTDAE 408

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+TV KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 409 RLRRMRDTVRKLPPPHYRTLEYLMRHLVRVAARGAETGMTPRNVAIVWAPNLLRCKELEV 468

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 469 GGVAALQGVGVQAVVTEFLVCYAELIF 495

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207017|gb|EFN84840.1| GTPase-activating protein CdGAPr [Harpegnathos saltator]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 126/147 (85%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ S   +
Sbjct: 347 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVSAVQASTDAE 406

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+ V KLPPPHYRTLEYL+ HL +VAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 407 RLRRMRDAVRKLPPPHYRTLEYLMRHLVKVAARGTETGMTPRNVAIVWAPNLLRCKELEV 466

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 467 GGVAALQGVGVQAVVTEFLVCYAELIF 493

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803228|gb|EFZ23249.1| hypothetical protein SINV_80213 [Solenopsis invicta]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 125/147 (85%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R+ FDEDR+P L++D++I+QDIHSVASLLKMYFRELPNPLCTYQLY +FV AVQ     +
Sbjct: 335 RNAFDEDRVPALHSDESILQDIHSVASLLKMYFRELPNPLCTYQLYSTFVNAVQAGSDAE 394

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L +MR+ V KLPPPHYRTLEYL+ HL RVAA G +TGMT RNVAIVWAPNLLRCKELE 
Sbjct: 395 RLRRMRDAVRKLPPPHYRTLEYLMRHLVRVAARGTETGMTPRNVAIVWAPNLLRCKELEV 454

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
           GGVAALQGVGVQAVVTEFLV Y   IF
Sbjct: 455 GGVAALQGVGVQAVVTEFLVCYAELIF 481

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
UNIPROTKB|A1A5D2	748	SNX26 "Rho GTPase-activating p	0.491	0.157	0.579	5.3e-44
FB|FBgn0032821	1843	CdGAPr "Cd GTPase activating p	0.612	0.079	0.54	9.8e-44
ZFIN|ZDB-GENE-060503-918	1676	si:dkey-287f10.3 "si:dkey-287f	0.620	0.088	0.470	1.6e-43
UNIPROTKB|O14559	1287	ARHGAP33 "Rho GTPase-activatin	0.491	0.091	0.579	5.2e-43
UNIPROTKB|F1MS60	1289	Bt.56147 "Uncharacterized prot	0.491	0.091	0.579	5.2e-43
RGD|2318374	1299	Arhgap33 "Rho GTPase activatin	0.491	0.090	0.579	5.3e-43
MGI|MGI:2673998	1305	Arhgap33 "Rho GTPase activatin	0.491	0.090	0.579	5.4e-43
MGI|MGI:2450166	2089	Arhgap32 "Rho GTPase activatin	0.620	0.071	0.464	8e-43
UNIPROTKB|G3V174	946	ARHGAP32 "Rho GTPase-activatin	0.491	0.124	0.563	1.2e-42
RGD|1305267	2086	Arhgap32 "Rho GTPase activatin	0.620	0.071	0.464	2.7e-42

UNIPROTKB|A1A5D2 SNX26 "Rho GTPase-activating protein 33" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 5.3e-44, Sum P(2) = 5.3e-44
 Identities = 69/119 (57%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct:   362 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 420

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE
Sbjct:   421 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELE 479

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

FB|FBgn0032821 CdGAPr "Cd GTPase activating protein-related" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 9.8e-44, Sum P(2) = 9.8e-44
 Identities = 81/150 (54%), Positives = 101/150 (67%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ--QSKL 141
             R  FDE+R+PDL   + + QDIH+V+SLLKMYFRELPNPLCTYQLY +FV A+Q    + 
Sbjct:   471 RRAFDEERVPDLGNPE-MKQDIHAVSSLLKMYFRELPNPLCTYQLYDNFVEAIQVKADEA 529

Query:   142 QDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201
              ++L  M+ETV KLPPPHYRTL+YL  HL +V+ H  +TGMT +N+AIVWAPNLLR   L
Sbjct:   530 DERLRLMKETVLKLPPPHYRTLKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPAL 589

Query:   202 EYXXXXXXXXXXXXXXXTEFLVVYYAAIFD 231
             E                TE+L+     IFD
Sbjct:   590 ESGGVAALRGVGVQAVVTEYLIRNCHNIFD 619

GO:0005096 "GTPase activator activity" evidence=ISS

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-060503-918 si:dkey-287f10.3 "si:dkey-287f10.3" [Danio rerio (taxid:7955)]

 Score = 374 (136.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 72/153 (47%), Positives = 98/153 (64%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD + +PDL T DT VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +   +
Sbjct:   404 RHEFDSEHVPDL-TKDTYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDDE 462

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
             +L ++ + +++LPPPHYRTLE+L+ HLSR+  + + T M  +N+AIVWAPNLLR K++E 
Sbjct:   463 RLVKVHDVIQQLPPPHYRTLEFLMRHLSRMGTYSNVTNMHCKNLAIVWAPNLLRSKQIES 522

Query:   203 --YXXXXXXXXXXXXXXXTEFLVVYYAAIFDKK 233
               +                EF++ +   +F  K
Sbjct:   523 ACFSGTSAFMEVRVQSVVVEFILNHVDVLFSPK 555

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

UNIPROTKB|O14559 ARHGAP33 "Rho GTPase-activating protein 33" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 69/119 (57%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct:   362 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 420

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE
Sbjct:   421 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELE 479

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MS60 Bt.56147 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 69/119 (57%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct:   362 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 420

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE
Sbjct:   421 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELE 479

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

RGD|2318374 Arhgap33 "Rho GTPase activating protein 33" [Rattus norvegicus (taxid:10116)]

 Score = 366 (133.9 bits), Expect = 5.3e-43, Sum P(2) = 5.3e-43
 Identities = 69/119 (57%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct:   386 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 444

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE
Sbjct:   445 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELE 503

GO:0005100 "Rho GTPase activator activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

MGI|MGI:2673998 Arhgap33 "Rho GTPase activating protein 33" [Mus musculus (taxid:10090)]

 Score = 366 (133.9 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
 Identities = 69/119 (57%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD +RIP+L +    +QDIHSV+SL K+YFRELPNPL TYQLY  F  A+     ++
Sbjct:   386 RHEFDSERIPEL-SGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEE 444

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLEYL+ HL+R+A H   T M ARN+AIVWAPNLLR  ELE
Sbjct:   445 RLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELE 503

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005100 "Rho GTPase activator activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

MGI|MGI:2450166 Arhgap32 "Rho GTPase activating protein 32" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 8.0e-43, Sum P(2) = 8.0e-43
 Identities = 71/153 (46%), Positives = 98/153 (64%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct:   419 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 477

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
             +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E 
Sbjct:   478 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 537

Query:   203 --YXXXXXXXXXXXXXXXTEFLVVYYAAIFDKK 233
               +                EF++ +   +F  K
Sbjct:   538 ACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGK 570

GO:0005096 "GTPase activator activity" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0007154 "cell communication" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|G3V174 ARHGAP32 "Rho GTPase-activating protein 32" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
 Identities = 67/119 (56%), Positives = 89/119 (74%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct:   345 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 403

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E
Sbjct:   404 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIE 462

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

RGD|1305267 Arhgap32 "Rho GTPase activating protein 32" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
 Identities = 71/153 (46%), Positives = 98/153 (64%)

Query:    84 RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
             RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct:   419 RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 477

Query:   144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE- 202
             +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E 
Sbjct:   478 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 537

Query:   203 --YXXXXXXXXXXXXXXXTEFLVVYYAAIFDKK 233
               +                EF++ +   +F  K
Sbjct:   538 ACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGK 570

GO:0005938 "cell cortex" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80YF9	RHG33_MOUSE	No assigned EC number	0.5430	0.6125	0.1126	yes	N/A
Q9VIS1	CDGAP_DROME	No assigned EC number	0.6333	0.6125	0.0797	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
cd04384	195	cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas	2e-66
pfam00620	152	pfam00620, RhoGAP, RhoGAP domain	2e-43
smart00324	174	smart00324, RhoGAP, GTPase-activator protein for R	1e-41
cd00159	169	cd00159, RhoGAP, RhoGAP: GTPase-activator protein	9e-41
cd04403	187	cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_	6e-33
cd04395	196	cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP	2e-30
cd04398	192	cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas	1e-28
cd04386	203	cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP	4e-27
cd04377	186	cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA	7e-27
cd04372	194	cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA	1e-25
cd04374	203	cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato	1e-24
cd04378	203	cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho	2e-24
cd04404	195	cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA	7e-24
cd04376	206	cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G	3e-22
cd04385	184	cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-	4e-22
cd04409	211	cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas	2e-21
cd04373	185	cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-	1e-20
cd04407	186	cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho	2e-20
cd04400	190	cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas	3e-20
cd04408	200	cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-	5e-20
cd04383	188	cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas	1e-18
cd04406	186	cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho	4e-18
cd04393	189	cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP	1e-16
cd04387	196	cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac	3e-16
cd04391	216	cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP	4e-16
cd04402	192	cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP	3e-15
cd04382	193	cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA	9e-15
cd04394	202	cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA	1e-14
cd04390	199	cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24	3e-14
cd04397	213	cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas	5e-14
cd04381	182	cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP	3e-12
cd04375	220	cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-	4e-12
cd07278	114	cd07278, PX_RICS_like, The phosphoinositide bindin	7e-12
cd04389	187	cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-	1e-11
cd04379	207	cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-	4e-11
cd04388	200	cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac	3e-10
cd04392	208	cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP	8e-10
cd04396	225	cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho	2e-08
cd07298	115	cd07298, PX_RICS, The phosphoinositide binding Pho	6e-08
cd04380	220	cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas	3e-07
cd07299	113	cd07299, PX_TCGAP, The phosphoinositide binding Ph	7e-07
cd04399	212	cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas	1e-05

>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

 Score =  203 bits (519), Expect = 2e-66
 Identities = 78/143 (54%), Positives = 105/143 (73%), Gaps = 4/143 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD ++IPDL T D  +QDIHSV+SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 52  RHEFDSEQIPDL-TKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEE 110

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L ++ + +++LPPPHYRTLE+L+ HLSR+A +   T M A+N+AIVWAPNLLR K++E 
Sbjct: 111 RLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIES 170

Query: 204 G---GVAALQGVGVQAVVTEFLV 223
               G AA   V +Q+VV EF++
Sbjct: 171 ACFSGTAAFMEVRIQSVVVEFIL 193

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain

 Score =  143 bits (363), Expect = 2e-43
 Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 3/116 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  FD     DL   D   +D+H VASLLK++ RELP PL T++LY  F+ A +    ++
Sbjct: 35  REAFDSGEDVDL---DLEEEDVHVVASLLKLFLRELPEPLLTFELYEEFIEAAKSEDEEE 91

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199
           ++  +RE + KLPP +  TL YL+ HL+RVA + +   M A N+AIV+ P LLR  
Sbjct: 92  RVEALRELLRKLPPANRDTLRYLLAHLNRVAQNSEVNKMNAHNLAIVFGPTLLRPP 147

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152

>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases

 Score =  139 bits (353), Expect = 1e-41
 Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 6/143 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R  FD    PDL   +    D+H VA LLK++ RELP PL TY+LY  F+ A +     +
Sbjct: 38  RDAFDSGPDPDLDLSE---YDVHDVAGLLKLFLRELPEPLITYELYEEFIEAAKLEDETE 94

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L  +RE +  LPP +  TL YL+ HL+RVA H ++  MTARN+AIV+ P LLR  + E 
Sbjct: 95  RLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE- 153

Query: 204 GGVAALQGVGVQAVVTEFLVVYY 226
             VA+L+ +  Q  V EFL+   
Sbjct: 154 --VASLKDIRHQNTVIEFLIENA 174

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174

>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

 Score =  137 bits (347), Expect = 9e-41
 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 7/136 (5%)

Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           FD     D   D     D+H VASLLK+Y RELP PL  ++LY  F+   +    ++++ 
Sbjct: 38  FDRGEDIDDLED----YDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIE 93

Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGV 206
            ++E ++ LPP +   L+YL+  L +++ + +   MTA N+AIV+AP LLR  + +    
Sbjct: 94  ALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---D 150

Query: 207 AALQGVGVQAVVTEFL 222
             L+ +     + EFL
Sbjct: 151 ELLEDIKKLNEIVEFL 166

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins. Length = 169

>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

 Score =  117 bits (295), Expect = 6e-33
 Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 6/140 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   D D   DL  DD+  +DIH +   LK++FRELP PL  Y L++ FV A++ S  + 
Sbjct: 51  RFAVDHDEKLDL--DDSKWEDIHVITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQ 108

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +++ +++ ++ LP P++ TL+ L  HL RV  HG+K  MT +N+AIV+ P LLR  E E 
Sbjct: 109 RVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLR-PEQET 167

Query: 204 GGVAA---LQGVGVQAVVTE 220
           G +A     Q   V+ ++ E
Sbjct: 168 GNIAVHMVYQNQIVELILLE 187

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

 Score =  111 bits (279), Expect = 2e-30
 Identities = 40/95 (42%), Positives = 61/95 (64%)

Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
           +D++ V+SLLK +FR+LP PL T +LY  F+ A +     ++L ++R  +  LP  HY T
Sbjct: 71  RDVNVVSSLLKSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYET 130

Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
           L++LI HL  VA + +   M  RN+AIV+ P L+R
Sbjct: 131 LKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVR 165

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

 Score =  106 bits (266), Expect = 1e-28
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 15/152 (9%)

Query: 84  RHTFDEDRIPDLYTDDTIV-----QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ 138
           +  FD+D  P       I       DIHSVASLLK++FRELP PL T  L   F+ A + 
Sbjct: 51  KELFDKD--PLNV--LLISPEDYESDIHSVASLLKLFFRELPEPLLTKALSREFIEAAKI 106

Query: 139 SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRC 198
                +   +   +  LP  +Y TL  L+ HL+R+  H     M+  N+AI+W P L+  
Sbjct: 107 EDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWGPTLMN- 165

Query: 199 KELEYGGVAALQGVGVQAVVTEFLVVYYAAIF 230
                        +  Q+ V E L+     IF
Sbjct: 166 -----AAPDNAADMSFQSRVIETLLDNAYQIF 192

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

 Score =  102 bits (257), Expect = 4e-27
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
            D H+VAS LK Y RELP+PL TY LY  +V A  +    ++L  +   + KLP  +   
Sbjct: 72  SDPHAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDN 131

Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQA---VVT 219
           L YLI  LS++A   D+  M+  N+AIV APNLL  K     G  A    G       + 
Sbjct: 132 LRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAK---NEGSLAEMAAGTSVHVVAIV 188

Query: 220 EFLVVYYAAIFD 231
           E ++ +    F 
Sbjct: 189 ELIISHADWFFP 200

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

 Score =  102 bits (255), Expect = 7e-27
 Identities = 40/94 (42%), Positives = 62/94 (65%)

Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164
           IH + S+LK + RELP PL T++LY +F+ A++  + Q+++  +   +E+LP  +  TLE
Sbjct: 67  IHVITSVLKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLE 126

Query: 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRC 198
            LI HL RVA   +   M+A  +AIV+AP +LRC
Sbjct: 127 RLIFHLVRVALQEEVNRMSANALAIVFAPCILRC 160

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 100 TIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPH 159
           T+  DI+ +   LK+YFR+LP P+ TY  Y  F+ A + S   ++L  + E +  LPP H
Sbjct: 66  TVYPDINVITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAH 125

Query: 160 YRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVT 219
           Y TL YL+ HL RV  H     M A N+ IV+ P L+R  E     +  L  +  Q ++ 
Sbjct: 126 YETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPPEDS--ALTTLNDMRYQILIV 183

Query: 220 EFLVVYYAAIF 230
           + L+     +F
Sbjct: 184 QLLITNEDVLF 194

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 194

>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

 Score = 96.3 bits (240), Expect = 1e-24
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           +I ++ S LK Y R LP PL TY+L++ F+ A +   L+ ++  +   V KLP  +   L
Sbjct: 85  EIKTITSALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREML 144

Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLV 223
           E LI HL+ V+ H  K  MT  N+ +V+ P LLR +E     VAA+  +  Q +V E L+
Sbjct: 145 ELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE---ETVAAIMDIKFQNIVVEILI 201

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

 Score = 96.0 bits (239), Expect = 2e-24
 Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 15/135 (11%)

Query: 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSK--------------LQDQLTQMRET 151
           H ++S+LK++ R+LP PL  ++LY+ F+   ++ +              +   + ++++ 
Sbjct: 69  HDISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDL 128

Query: 152 VEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG-GVAALQ 210
           + +LP  +Y TL++LI HL RVA   ++  M+  N+ IV+ P L+R +  +    +++L 
Sbjct: 129 LRQLPASNYNTLQHLIAHLYRVAEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSLV 188

Query: 211 GVGVQAVVTEFLVVY 225
             G QA + EFL+  
Sbjct: 189 DYGYQARLVEFLITN 203

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 203

>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

 Score = 94.3 bits (235), Expect = 7e-24
 Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 5/129 (3%)

Query: 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYR 161
            +D+H  A +LK + RELP PL T+ LY   VG +   K ++++ ++++ ++ LP  +Y+
Sbjct: 72  YEDVHLPAVILKTFLRELPEPLLTFDLYDDIVGFLNVDK-EERVERVKQLLQTLPEENYQ 130

Query: 162 TLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEF 221
            L+YLI  L +V+AH D+  MT  N+A+V+ PNLL  K+       +L  +      T+F
Sbjct: 131 VLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKD----ASMSLSAINPINTFTKF 186

Query: 222 LVVYYAAIF 230
           L+ +   IF
Sbjct: 187 LLDHQDEIF 195

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 195

>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

 Score = 90.2 bits (224), Expect = 3e-22
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)

Query: 90  DRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMR 149
           DR  D+  D+     +H VA+LLK +FR++P+PL   +LY +F+G     +  +QL  ++
Sbjct: 48  DRGIDVVLDEN--HSVHDVAALLKEFFRDMPDPLLPRELYTAFIGT-ALLEPDEQLEALQ 104

Query: 150 ETVEKLPPPHYRTLEYLIGHLSRVAAHG----DKTG-------MTARNVAIVWAPNLLRC 198
             +  LPP +  TL  L+  L  VA H     D+ G       MT+ N+A ++ PNLL  
Sbjct: 105 LLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHK 164

Query: 199 ---KELEYGGVAA-LQGVGVQAVVTEFLVVYYAAIF 230
               E E+   +  ++       V + ++  Y  +F
Sbjct: 165 QKSGEREFVQASLRIEESTAIINVVQTMIDNYEELF 200

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 206

>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

 Score = 89.3 bits (222), Expect = 4e-22
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164
           +H VA +LK + R+LP+PL T +L+  ++ A +     +++ + +E + +LPP +  TL+
Sbjct: 69  VHDVADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLK 128

Query: 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVV 224
            LIGHL RV  H D+  M+  N+A+V+ P L +  E   G     Q    +  V E L+ 
Sbjct: 129 VLIGHLYRVQKHSDENQMSVHNLALVFGPTLFQTDEHSVG-----QTSH-EVKVIEDLID 182

Query: 225 YY 226
            Y
Sbjct: 183 NY 184

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 184

>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 23/143 (16%)

Query: 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQ--------------------- 144
           H ++++LK+Y R+LP PL  ++LY+ F+G  ++S+  ++                     
Sbjct: 69  HDISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNR 128

Query: 145 -LTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
            L + ++ + +LP P+Y TL++LI HL RV+   ++  M+A N+ I++ P L+R +  + 
Sbjct: 129 ILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDA 188

Query: 204 G-GVAALQGVGVQAVVTEFLVVY 225
              +++L     QA + E L+ Y
Sbjct: 189 TVSLSSLVDYPHQARLVELLITY 211

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 211

>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

 Score = 85.6 bits (212), Expect = 1e-20
 Identities = 37/111 (33%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           FD+D   DL + D  V   ++VA  LK +F ELP+PL  Y ++   V A + +  + +L 
Sbjct: 53  FDQDHNLDLVSKDFTV---NAVAGALKSFFSELPDPLIPYSMHLELVEAAKINDREQRLH 109

Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            ++E ++K PP ++   +Y+I HL++V+ +     MT+ N++I + P L+R
Sbjct: 110 ALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMR 160

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 185

>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

 Score = 85.0 bits (210), Expect = 2e-20
 Identities = 42/96 (43%), Positives = 61/96 (63%)

Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164
           IH++  LLK + RELP PL T+  Y+ F+ AV+  + Q+QL  +   +E+LP  ++ TLE
Sbjct: 67  IHAITGLLKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLE 126

Query: 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
            LI HL +VA   D   M+   +AIV+AP LLRC +
Sbjct: 127 RLIFHLVKVALEEDVNRMSPNALAIVFAPCLLRCPD 162

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

 Score = 84.3 bits (209), Expect = 3e-20
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           F+ +   DL++      D+H+VA LLK+Y RELP  +   +L++ F   V+++  + Q  
Sbjct: 61  FNTEYDVDLFSSSL-YPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRA 119

Query: 147 -QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195
            ++++ V +LP  +Y  L  L   L ++  H D   M  RNV IV++P L
Sbjct: 120 LELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRNVCIVFSPTL 169

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 190

>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

 Score = 84.1 bits (208), Expect = 5e-20
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%)

Query: 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ------------SKLQDQLTQMRETVE 153
           H + S+LK + +ELP P+  +QLY  F+   ++            S +++ +  ++E + 
Sbjct: 69  HDITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLG 128

Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVG 213
           +LP  +Y TL +L+ HL RVA   +   M+  N+ IV+ P LLR        +  L   G
Sbjct: 129 RLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTG 188

Query: 214 VQAVVTEFLVV 224
            QA + EFL+ 
Sbjct: 189 YQAQLVEFLIS 199

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 35/111 (31%), Positives = 56/111 (50%)

Query: 90  DRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMR 149
           +R  D   DD    DI+SVA +LK+YFR L NPL   + +   +  V+     +++ Q+R
Sbjct: 57  ERGEDPLADDQNDHDINSVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIR 116

Query: 150 ETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
           E +  LP      + YL   L+ ++   D+  M   N+AI + P L+   E
Sbjct: 117 EILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPE 167

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 188

>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

 Score = 78.9 bits (194), Expect = 4e-18
 Identities = 37/97 (38%), Positives = 61/97 (62%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           +IH +AS+ K + R+LPNPL T++LY  F+ A+   + ++ +  +   +++L   H  TL
Sbjct: 66  NIHVIASVFKQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTL 125

Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
           E LI HL R+A   +   M+A  +AIV+AP +LRC +
Sbjct: 126 ERLIFHLVRIALQEETNRMSANALAIVFAPCILRCPD 162

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 186

>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   D     DL  +     D+ S ASLL+++ +ELP  L    L    +   Q    +D
Sbjct: 55  RQRLDSGEEVDLSKEA----DVCSAASLLRLFLQELPEGLIPASLQIRLMQLYQDYNGED 110

Query: 144 -QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195
               ++R+ +++LPP +Y  L++L   LS VA+   +  MTA N+A V+ P++
Sbjct: 111 EFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDV 163

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude. Length = 189

>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           D++++A  LK+YFRELP PL T +LY +F   +  S    + + M   +  LP P+  T 
Sbjct: 69  DVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTF 128

Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQA-VVTEFL 222
            +L+ HL RVA   +   M+  N+A V+ P LLR  E E               V+++  
Sbjct: 129 LFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNTMTDSWSLEVMSQVQ 188

Query: 223 VVYY 226
           V+ Y
Sbjct: 189 VLLY 192

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 196

>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEY 165
           H  ASLLK++ RELP PL T +   +F         +DQL  +   V  LP  +  TL+ 
Sbjct: 77  HDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKA 136

Query: 166 LIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQ----GVGVQAVVTEF 221
           L+  L +V  H +K  M   NVA++ APNL   +        +LQ         A +   
Sbjct: 137 LLEFLQKVVDHEEKNKMNLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRL 196

Query: 222 LVVY 225
           L+ Y
Sbjct: 197 LIRY 200

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 216

>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
           + +  +AS+LK + R +P  L +  LY  ++ A+ Q   ++++ +++  ++KLP P+   
Sbjct: 64  EPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLL 123

Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL---RCKELEYGGVAALQGVGVQAVV- 218
           L++LI  L  ++ + +   M A N+A+  AP+LL      E        LQ   ++ V  
Sbjct: 124 LKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSE--------LQNEDLKKVTS 175

Query: 219 -TEFLVVYYAAIF 230
             +FL+     IF
Sbjct: 176 LVQFLIENCQEIF 188

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 192

>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

 Score = 70.0 bits (172), Expect = 9e-15
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           DIH +   LK + R L  PL T+ L+  F+ A +     +    + + + +LP P+  TL
Sbjct: 68  DIHVICGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTL 127

Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195
            +LI HL RVA   +   M   N+A V+ P +
Sbjct: 128 AFLILHLQRVAQSPE-CKMDINNLARVFGPTI 158

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 193

>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query: 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLI 167
           VA LLK +FRELP PL  Y L+ + + A +    +++ +        LP  H  TL Y  
Sbjct: 72  VAGLLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFF 131

Query: 168 GHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201
             L  VA    +  M + N+A+++APNL + +E 
Sbjct: 132 SFLYDVAQRCSENKMDSSNLAVIFAPNLFQSEEG 165

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 202

>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 6/118 (5%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ-SKLQ 142
           +  FD    P  +  DT   D+H+VASLLK+Y RELP P+  +  Y  F+   Q  SK +
Sbjct: 57  QDAFDAGERP-SFDSDT---DVHTVASLLKLYLRELPEPVIPWAQYEDFLSCAQLLSKDE 112

Query: 143 DQ-LTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199
           ++ L ++ + V  LP  +Y  L Y+   L  V ++     M+ +N+A V+ PN+LR K
Sbjct: 113 EKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILRPK 170

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 199

>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

 Score = 68.2 bits (167), Expect = 5e-14
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 16/118 (13%)

Query: 90  DRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMR 149
             +PDL + +  VQ    +A+LLK + RELP+PL T++LY  ++ +    K++D+  + R
Sbjct: 70  TEVPDL-SKENPVQ----LAALLKKFLRELPDPLLTFKLYRLWISS---QKIEDEEERKR 121

Query: 150 E---TVEKLPPPHYRTLEYLIGHLSRVA--AHGD-KTG--MTARNVAIVWAPNLLRCK 199
                   LP  H  T+E L   L  V+  +H D +TG  M   N+A V  PN+L  K
Sbjct: 122 VLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNILYSK 179

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 213

>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           +  +VASLLK Y RELP PL T +L   F  A  +    ++  +++  +++LP  +   L
Sbjct: 70  EPPTVASLLKQYLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLL 129

Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195
            +LI H+  V A   +T M  +N++IV +P +
Sbjct: 130 AWLIVHMDHVIAQELETKMNIQNISIVLSPTV 161

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 182

>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 97  TDDTIV---QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
           + D +    Q  + VA +LK YFR+LP PL T +L  +F+   Q    + +L  ++  + 
Sbjct: 61  STDNVNYDGQQAYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL 120

Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL 195
            LP  +   L+ L+  LS VAA+  +  MTA N+A+  AP+L
Sbjct: 121 LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAPSL 162

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|132811 cd07278, PX_RICS_like, The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 20/38 (52%), Positives = 31/38 (81%)

Query: 1   MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL 38
              +Q  + ++L+ YL+RLS+IAG+L+NCGPVL+W+EL
Sbjct: 77  EKREQQNLHQVLSDYLKRLSSIAGNLLNCGPVLNWLEL 114

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. Length = 114

>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 19/121 (15%)

Query: 83  TRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
            +   D+   P    +D      H  ASLLK++ REL  PL    LY   + A       
Sbjct: 56  LKLRVDQWDYPLSGLED-----PHVPASLLKLWLRELEEPLIPDALYQQCISA------S 104

Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHL-----SRVAAHGDKTGMTARNVAIVWAPNLLR 197
           +   +  E V+KLP  +   L YLI  L         AH   T M   N+A+V+APN+LR
Sbjct: 105 EDPDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAH---TKMDVSNLAMVFAPNILR 161

Query: 198 C 198
           C
Sbjct: 162 C 162

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 187

>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQ---MRETVEKLPPPHY 160
           DI+ +  +LK Y RELP PL T QLY   + A+  +   D  T        ++ LP    
Sbjct: 72  DINVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAK 131

Query: 161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRC 198
            TL  L+ HLS V ++ ++  MT +N+A+ + P L+ C
Sbjct: 132 ATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFC 169

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 207

>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLP--PPHY- 160
           D+ ++A  LK Y  +LPNP+    +Y   +   Q+ +  D+  Q+   + + P  P  Y 
Sbjct: 65  DVAALADALKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYW 124

Query: 161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            TL+YL+ H  R+     K  ++AR +A +++P L R
Sbjct: 125 LTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFR 161

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 200

>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFV---------------GAVQQSKLQDQLTQMR 149
            H  A++LK +  ELP PL T+  Y + +                A  + +    L  ++
Sbjct: 61  AHDCATVLKGFLGELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKER---LLEALQ 117

Query: 150 ETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
             +  LP  +   L+ ++  L + A H DK  M+A N+A+++ P+L+
Sbjct: 118 LLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLI 164

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 208

>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 17/109 (15%)

Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSF---------VGAVQQSKLQDQLT--------Q 147
           +H  AS+L+ Y   LP PL    LY  F         +    + ++ + L         +
Sbjct: 87  VHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKE 146

Query: 148 MRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
            R+ + +LP  + + L YL+  L+  A + DK  MTA N+A ++ P +L
Sbjct: 147 YRDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGIL 195

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 225

>gnl|CDD|132831 cd07298, PX_RICS, The phosphoinositide binding Phox Homology domain of PX-RICS

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 1   MSDQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL 38
           + D    + ++L  YL RLS IAG+ INCGP L+WME+
Sbjct: 78  LKDSPESVTQMLMAYLSRLSAIAGNKINCGPALTWMEI 115

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. Length = 115

>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 97  TDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE-KL 155
           +         SVA  L ++   LP+P+  Y LY      ++     ++    R+ +   L
Sbjct: 96  SPFNSPGSAESVAEALLLFLESLPDPIIPYSLYER---LLEAVANNEE--DKRQVIRISL 150

Query: 156 PPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQ 215
           PP H     YL   L  + +     G+    +A ++   LLR      G     +    +
Sbjct: 151 PPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRAGGKERRAERDRKR 210

Query: 216 AVVTEFL 222
           A + +FL
Sbjct: 211 AFIEQFL 217

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 220

>gnl|CDD|132832 cd07299, PX_TCGAP, The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 17/28 (60%), Positives = 23/28 (82%)

Query: 11  LLTKYLERLSTIAGSLINCGPVLSWMEL 38
           LL++YL RL+ I  S +NCGPVL+WME+
Sbjct: 86  LLSEYLNRLTGIVDSNLNCGPVLTWMEI 113

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. It is unknown whether TCGAP also functions as a SNX. Length = 113

>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 108 VASLLKMYFRELPNPLCTYQLY------HSFVGAVQQSKLQDQLTQMRETVEKLPPPHYR 161
           VAS+LK+Y  ELP+ L  + +Y      +S     Q+     ++  ++ T+ +LP  H  
Sbjct: 81  VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIA 140

Query: 162 TLEYLIGHLSR 172
           TL+ +I H  R
Sbjct: 141 TLDAIITHFYR 151

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
cd04372	194	RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-	100.0
cd04386	203	RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa	100.0
cd04382	193	RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-	100.0
cd04376	206	RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti	100.0
cd04402	192	RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac	100.0
cd04390	199	RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas	100.0
cd04403	187	RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G	100.0
cd04408	200	RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator	100.0
cd04375	220	RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator	100.0
cd04384	195	RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato	100.0
cd04392	208	RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac	100.0
cd04407	186	RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas	100.0
cd04395	196	RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac	100.0
cd04385	184	RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator	100.0
cd04381	182	RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa	100.0
cd04391	216	RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac	100.0
cd04398	192	RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato	100.0
cd04383	188	RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato	100.0
cd04406	186	RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas	100.0
cd04374	203	RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein	100.0
cd04378	203	RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas	100.0
cd04409	211	RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato	100.0
cd04397	213	RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato	100.0
cd04404	195	RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-	100.0
cd04394	202	RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-	100.0
cd04396	225	RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas	100.0
cd04387	196	RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr	100.0
cd04373	185	RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator	100.0
cd04377	186	RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-	100.0
cd04400	190	RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato	100.0
cd04388	200	RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr	100.0
cd04379	207	RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator	100.0
cd04399	212	RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato	100.0
cd04393	189	RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac	100.0
cd04389	187	RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator	100.0
smart00324	174	RhoGAP GTPase-activator protein for Rho-like GTPas	100.0
KOG4407|consensus	1973		100.0
KOG1451|consensus	812		100.0
cd00159	169	RhoGAP RhoGAP: GTPase-activator protein (GAP) for	100.0
cd04380	220	RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato	100.0
KOG4270|consensus	577		100.0
KOG2200|consensus	674		100.0
KOG1450|consensus	650		99.98
KOG4269|consensus	1112		99.97
KOG1117|consensus	1186		99.97
PF00620	151	RhoGAP: RhoGAP domain; InterPro: IPR000198 Members	99.97
KOG3564|consensus	604		99.96
KOG2710|consensus	412		99.96
KOG4406|consensus	467		99.96
KOG1453|consensus	918		99.93
KOG1452|consensus	442		99.82
KOG4271|consensus	1100		99.81
cd04405	235	RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas	99.78
KOG4724|consensus	741		99.77
cd04401	198	RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato	99.74
KOG4370|consensus	514		99.31
KOG3565|consensus	640		99.27
PF08101	420	DUF1708: Domain of unknown function (DUF1708); Int	98.36
KOG4724|consensus	741		97.69
KOG1453|consensus	918		97.44
KOG1449|consensus	670		97.23
KOG1449|consensus	670		96.88
KOG4271|consensus	1100		96.2
cd07278	114	PX_RICS_like The phosphoinositide binding Phox Hom	96.2
cd07299	113	PX_TCGAP The phosphoinositide binding Phox Homolog	96.19

>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins

Probab=100.00  E-value=8e-46  Score=305.93  Aligned_cols=191  Identities=29%  Similarity=0.504  Sum_probs=168.9

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDIH  106 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~~  106 (240)
                      |.|+-...+..+.++| ++.+|+.       .++++|+++|||||++|+.++++++++.||++. ..++..  ....|+|
T Consensus         2 G~~L~~~~~~~~~~iP~iv~~ci~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~--~~~~d~h   72 (194)
T cd04372           2 GCDLTTLVKAHNTQRPMVVDMCIR-------EIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISA--TVYPDIN   72 (194)
T ss_pred             CCChHHHHHHcCCCCChHHHHHHH-------HHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcc--cccccHH
Confidence            4566666677777899 6889997       477889999999999999999999999999854 334322  1235899


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus        73 ~va~lLK~flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~N  152 (194)
T cd04372          73 VITGALKLYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAEN  152 (194)
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      ||+||||+|+++++.+  ....+.++..+..++++||+||++||
T Consensus       153 Laivf~P~Ll~~~~~~--~~~~~~~~~~~~~iv~~LI~~~~~iF  194 (194)
T cd04372         153 LGIVFGPTLMRPPEDS--ALTTLNDMRYQILIVQLLITNEDVLF  194 (194)
T ss_pred             HHHHHhcccCCCCCcc--HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence            9999999999998753  34456777888999999999999998

Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT

>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins

Probab=100.00  E-value=2.7e-44  Score=298.80  Aligned_cols=199  Identities=27%  Similarity=0.363  Sum_probs=171.9

Q ss_pred             ccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCH
Q psy3002          27 INCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDI  105 (240)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~  105 (240)
                      .++.|+-+..+.+++..| ++.+|+.       .++++|+.+|||||++|+.++++++++.+|.|......  .....|+
T Consensus         4 ~FG~~L~~~~~~~~~~iP~~v~~~i~-------~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~--~~~~~d~   74 (203)
T cd04386           4 VFGTPLEEHLKRTGREIALPIEACVM-------CLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPL--DEFYSDP   74 (203)
T ss_pred             cCCCCHHHHHHHcCCCCCHHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcch--hhccCCH
Confidence            355677777777777888 5788986       46788999999999999999999999999998643211  1123699


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      |+||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.|+||++
T Consensus        75 h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~  154 (203)
T cd04386          75 HAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPS  154 (203)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence            99999999999999999999999999999998888889999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      |||+||||+|++++..+...+...........++++||+||+.||+++.
T Consensus       155 nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~~  203 (203)
T cd04386         155 NIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGEV  203 (203)
T ss_pred             HHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCCC
Confidence            9999999999999875432333345566789999999999999999863

Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins

Probab=100.00  E-value=1.4e-43  Score=291.88  Aligned_cols=189  Identities=23%  Similarity=0.310  Sum_probs=169.7

Q ss_pred             CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002          30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV  108 (240)
Q Consensus        30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v  108 (240)
                      |.+.+....+...+| ++.+|+.       .++++|+++|||||++|+..+++++++.|+++........    .|+|+|
T Consensus         4 ~~~~~~~~~~~~~IP~~l~~ci~-------~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~----~d~h~v   72 (193)
T cd04382           4 GELADFDPSTSPMIPALIVHCVN-------EIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSK----VDIHVI   72 (193)
T ss_pred             ccccccCCCCCCCccHHHHHHHH-------HHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCccccc----CCHHHH
Confidence            445555566777888 7889997       5788999999999999999999999999998865432222    599999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002         109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA  188 (240)
Q Consensus       109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa  188 (240)
                      |++||+|||+||+||+|.+.|+.|+++.+..+.++++..++.++..||+.|+.+|++|+.||++|++ ++.||||+.|||
T Consensus        73 aslLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLA  151 (193)
T cd04382          73 CGCLKDFLRSLKEPLITFALWKEFMEAAEILDEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLA  151 (193)
T ss_pred             HHHHHHHHHhCCCcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhh
Confidence            9999999999999999999999999999988899999999999999999999999999999999999 999999999999


Q ss_pred             HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      +||||+||+.+..+.+.+..+.++..+..+|+.||++.+..|
T Consensus       152 ivf~P~L~~~~~~~~~~~~~~~~~~~~~~vve~Li~~~~~~~  193 (193)
T cd04382         152 RVFGPTIVGYSVPNPDPMTILQDTVRQPRVVERLLEIPSDYW  193 (193)
T ss_pred             hhhhchhcCCCCCCccHHHHHHHhHHHHHHHHHHHhCCcccC
Confidence            999999999988766678888999999999999999988765

MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway

>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins

Probab=100.00  E-value=1.4e-43  Score=294.55  Aligned_cols=183  Identities=26%  Similarity=0.377  Sum_probs=161.8

Q ss_pred             ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002          40 NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE  118 (240)
Q Consensus        40 ~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~  118 (240)
                      .+++| ++.+|+.       .++++|+++|||||++|+..+++++++.||+|....+...    .|+|+||++||.|||+
T Consensus         6 ~~~iP~iv~~ci~-------~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~----~~~h~va~lLK~fLRe   74 (206)
T cd04376           6 ARQVPRLVESCCQ-------HLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDEN----HSVHDVAALLKEFFRD   74 (206)
T ss_pred             CCCCCHHHHHHHH-------HHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCccc----CCHHHHHHHHHHHHHh
Confidence            45677 6888996       4678899999999999999999999999999987765443    7999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCC-----------CCCCChhhH
Q psy3002         119 LPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGD-----------KTGMTARNV  187 (240)
Q Consensus       119 Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~-----------~NkM~~~nL  187 (240)
                      ||+||+|.++|+.|+.+.... .++++..++.++.+||+.||.+|++|+.||++|+++++           .||||++||
T Consensus        75 LPePLi~~~~y~~~i~~~~~~-~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NL  153 (206)
T cd04376          75 MPDPLLPRELYTAFIGTALLE-PDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNL  153 (206)
T ss_pred             CCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHH
Confidence            999999999999999988754 67889999999999999999999999999999999986           799999999


Q ss_pred             HHhhccccccCCccccc----hhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         188 AIVWAPNLLRCKELEYG----GVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       188 a~vfaP~l~~~~~~~~~----~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      |+||||+|++++.....    ....+.+...+..+|++||+||+.||....
T Consensus       154 Aivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  204 (206)
T cd04376         154 ATIFGPNLLHKQKSGEREFVQASLRIEESTAIINVVQTMIDNYEELFMVSP  204 (206)
T ss_pred             HHHhhccccCCCCCcccccchhhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence            99999999999875421    234566777888999999999999998543

ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins

Probab=100.00  E-value=1.8e-43  Score=291.50  Aligned_cols=188  Identities=19%  Similarity=0.272  Sum_probs=167.3

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+-...+  ++++| ++.+|+.       .++++|+.+|||||++|+..+++++++.+|+|...++. .    .|+|+
T Consensus         3 G~~L~~~~~--~~~vP~~i~~~i~-------~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~-~----~~~~~   68 (192)
T cd04402           3 GQPLSNICE--DDNLPKPILDMLS-------LLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLK-A----EPVLL   68 (192)
T ss_pred             CCcHHHHhC--CCCCCHHHHHHHH-------HHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCc-c----CCHHH
Confidence            344444444  56788 6788997       46678999999999999999999999999999876652 2    69999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV  187 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL  187 (240)
                      ||++||+|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++++.||++|+.+++.|+||++||
T Consensus        69 va~~lK~flreLpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nL  148 (192)
T cd04402          69 LASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNL  148 (192)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHh
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002         188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK  233 (240)
Q Consensus       188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~  233 (240)
                      |+||||+|++++..+   .....+......++++||+|+++||+++
T Consensus       149 Ai~faP~l~~~~~~~---~~~~~~~~~~~~~~~~LI~~~~~IF~~~  191 (192)
T cd04402         149 AVCIAPSLLWPPASS---ELQNEDLKKVTSLVQFLIENCQEIFGED  191 (192)
T ss_pred             hhhccccccCCCCcc---HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence            999999999998753   2335566778999999999999999986

ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain

Probab=100.00  E-value=2.1e-43  Score=292.68  Aligned_cols=177  Identities=26%  Similarity=0.442  Sum_probs=157.7

Q ss_pred             cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002          41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL  119 (240)
Q Consensus        41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L  119 (240)
                      +..| ++.+|+.       .++++|+++|||||++|+..+++++++.+|+|...++...    .|+|+||++||.|||+|
T Consensus        20 ~~iP~~i~~~i~-------~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~----~d~h~va~lLK~fLReL   88 (199)
T cd04390          20 RLVPILVEQCVD-------FIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSD----TDVHTVASLLKLYLREL   88 (199)
T ss_pred             CCCChHHHHHHH-------HHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcccc----CCHHHHHHHHHHHHHhC
Confidence            3467 5778886       4678899999999999999999999999999987655433    79999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002         120 PNPLCTYQLYHSFVGAVQQ--SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR  197 (240)
Q Consensus       120 p~pLi~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~  197 (240)
                      |+||+|.+.|+.|+.+.+.  .+.+.++..++.++..||+.|+.+|++|+.||++|+++++.||||+.|||+||||+|+|
T Consensus        89 PePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~llr  168 (199)
T cd04390          89 PEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILR  168 (199)
T ss_pred             CCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhccccCC
Confidence            9999999999999988763  45677889999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      ++..+  ....+........++++||+|+++||
T Consensus       169 ~~~~~--~~~~~~~~~~~~~~~~~lI~~~~~~F  199 (199)
T cd04390         169 PKVED--PATIMEGTPQIQQLMTVMISKHEPLF  199 (199)
T ss_pred             CCCCC--HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence            98654  44556667777899999999999998

ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r

>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains

Probab=100.00  E-value=3.5e-43  Score=288.58  Aligned_cols=185  Identities=29%  Similarity=0.452  Sum_probs=162.2

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+-...+.++...| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|.+...++..  ....|+|+
T Consensus         2 Gv~L~~~~~~~~~~iP~~l~~~i~-------~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~--~~~~d~h~   72 (187)
T cd04403           2 GCHLEALCQRENSTVPKFVRLCIE-------AVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDD--SKWEDIHV   72 (187)
T ss_pred             CCChHHHHHHcCCCCChHHHHHHH-------HHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccc--cccccHHH
Confidence            4455566666777888 6889996       467889999999999999999999999999987654432  12379999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV  187 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL  187 (240)
                      ||++||.|||+||+||+|.+.|+.|.++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.||
T Consensus        73 va~lLK~fLReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NL  152 (187)
T cd04403          73 ITGALKLFFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNL  152 (187)
T ss_pred             HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHh
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      |+||||+|++++..+   .....++..++.+|++||+|
T Consensus       153 Aivf~P~ll~~~~~~---~~~~~~~~~~~~~ve~l~~~  187 (187)
T cd04403         153 AIVFGPTLLRPEQET---GNIAVHMVYQNQIVELILLE  187 (187)
T ss_pred             hhhccccccCCCCcc---hHHHHHhHHHHHHHHHHhhC
Confidence            999999999998754   22234666899999999986

Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein)

Probab=100.00  E-value=2.7e-43  Score=291.92  Aligned_cols=186  Identities=26%  Similarity=0.360  Sum_probs=162.9

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+-...+.+.+++| ++.+|+.       .++.+|+++|||||++|+..++++|++.||+|........    .|||+
T Consensus         2 Gv~l~~l~~~~~~~vP~iv~~ci~-------~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~----~~~h~   70 (200)
T cd04408           2 GVDFSQLPRDFPEEVPFVVVRCTA-------EIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSG----HSPHD   70 (200)
T ss_pred             CCCHHHHHHhCCCCCChHHHHHHH-------HHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCccc----CCHHH
Confidence            3455556667788899 7889997       5778999999999999999999999999999875322222    69999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhc--C----------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQ--S----------KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA  175 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~--~----------~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~  175 (240)
                      ||++||.|||+||+||+|.++|+.|+++.+.  .          +.++++.+++.++..||+.||.+|++|+.||++|++
T Consensus        71 va~lLK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~~LP~~n~~~L~~L~~~L~~V~~  150 (200)
T cd04408          71 ITSVLKHFLKELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAE  150 (200)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987652  1          245789999999999999999999999999999999


Q ss_pred             CCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         176 HGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       176 ~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      +++.||||+.|||+||||+|++++..+...+..+.+++.++.+|++||+|
T Consensus       151 ~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~q~~~ve~li~~  200 (200)
T cd04408         151 RFEDNKMSPNNLGIVFGPTLLRPLVGGDVSMICLLDTGYQAQLVEFLISN  200 (200)
T ss_pred             hhhccCCCHhHhhhhhccccCCCCCCCchHHHHHhccchHHHHHHHHhhC
Confidence            99999999999999999999999976555677778899999999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins

Probab=100.00  E-value=4e-43  Score=294.65  Aligned_cols=194  Identities=22%  Similarity=0.261  Sum_probs=168.7

Q ss_pred             ccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCH
Q psy3002          27 INCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDI  105 (240)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~  105 (240)
                      .++.|+....+.+..+.| ++.+|+.       .++.+|+++|||||++|+..++++|++.+|.+........    .++
T Consensus         4 vFGvpL~~~~~r~g~~IP~~i~~~i~-------~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~----~~~   72 (220)
T cd04375           4 VFGVPLLVNLQRTGQPLPRSIQQAMR-------WLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDG----QQA   72 (220)
T ss_pred             EecCcHHHHHhhcCCCCChHHHHHHH-------HHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCccc----ccH
Confidence            356677667777777888 6788986       4678899999999999999999999999998754332222    689


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      |+||++||.|||+||+||+|.++|+.|+++.+..+.++++++++.++..||++||.+|++|+.||++|+.|++.||||++
T Consensus        73 ~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  152 (220)
T cd04375          73 YDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTAT  152 (220)
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHH
Confidence            99999999999999999999999999999988778889999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCcccc-----------------chhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         186 NVAIVWAPNLLRCKELEY-----------------GGVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~-----------------~~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      |||+||||+||+......                 .....+.+...+..+|.+||+||+.||.
T Consensus       153 NLAivfaP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~v~~lI~~~~~lf~  215 (220)
T cd04375         153 NLAVCLAPSLFHLNTSRRENSSPARRMQRKKSLGKPDQKELSENKAAHQCLAYMIEECNTLFM  215 (220)
T ss_pred             HHHHHHhhhhcCCCCCCcccccchhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999865321                 1234566777789999999999999995

DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA

Probab=100.00  E-value=3.3e-43  Score=290.28  Aligned_cols=189  Identities=43%  Similarity=0.677  Sum_probs=165.6

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH  106 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~  106 (240)
                      ++.|+-+..+.+..++| ++.+|+.       .++.+|+ .|||||++|+..+++++++.+|++...++... ....|+|
T Consensus         3 FG~~L~~~~~~~g~~iP~il~~~i~-------~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~-~~~~d~h   73 (195)
T cd04384           3 FGCDLTEHLLNSGQDVPQVLKSCTE-------FIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKD-VYIQDIH   73 (195)
T ss_pred             CCccHHHHHHHcCCCCChHHHHHHH-------HHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccc-cccccHH
Confidence            34455556566778889 6889997       4678888 59999999999999999999999987665322 2346999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||.|||+||+||+|.+.|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|
T Consensus        74 ~va~lLK~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  153 (195)
T cd04384          74 SVSSLCKLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKN  153 (195)
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccc---hhhhhhhhhhHHHHHHHHHhc
Q psy3002         187 VAIVWAPNLLRCKELEYG---GVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~---~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||+||||+|+++++....   +.....+++.+..|+++||+|
T Consensus       154 LAivf~P~L~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~~  195 (195)
T cd04384         154 LAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH  195 (195)
T ss_pred             hhHhhhhhcCCCCccccccchHHHHHHHHhhhhhheehhhcC
Confidence            999999999999864322   356678888999999999987

CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins

Probab=100.00  E-value=6.2e-43  Score=291.16  Aligned_cols=182  Identities=20%  Similarity=0.249  Sum_probs=156.5

Q ss_pred             ccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002          38 LDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR  117 (240)
Q Consensus        38 ~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr  117 (240)
                      ++..|...+.+|+.       .+++ |+++|||||++|+.+++++|++.+|+|...++...   ..|+|+||++||.|||
T Consensus         5 ~~~~~~~~v~~~i~-------~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~---~~~~h~va~lLK~flR   73 (208)
T cd04392           5 LTEEGIAQIYQLIE-------YLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESG---GFHAHDCATVLKGFLG   73 (208)
T ss_pred             ccccccHHHHHHHH-------HHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccc---cCCHHHHHHHHHHHHH
Confidence            45667777778886       3555 89999999999999999999999999987665422   2689999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         118 ELPNPLCTYQLYHSFVGAVQ------------QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       118 ~Lp~pLi~~~~~~~~~~~~~------------~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      +||+||+|.+.|+.|.++.+            ..+.++++..++.++..||+.||.+|++|+.||++|+++++.||||+.
T Consensus        74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~  153 (208)
T cd04392          74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSAD  153 (208)
T ss_pred             hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCHH
Confidence            99999999999999987664            234567789999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      |||+||||+|++++..+  ......+....+.+|++||+||+.||+.
T Consensus       154 NLAivf~P~Ll~~~~~~--~~~~~~~~~~~~~iv~~lI~~~~~iF~~  198 (208)
T cd04392         154 NLALLFTPHLICPRNLT--PEDLHENAQKLNSIVTFMIKHSQKLFKA  198 (208)
T ss_pred             HHHHHhCcccCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999987643  2222345567889999999999999974

The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB

Probab=100.00  E-value=9.1e-43  Score=285.63  Aligned_cols=181  Identities=28%  Similarity=0.385  Sum_probs=159.9

Q ss_pred             chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHH
Q psy3002          33 LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASL  111 (240)
Q Consensus        33 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~l  111 (240)
                      ++.+..++.++| ++.+|+.       .++.+|+.+|||||++|+..+++++++.+|.+.......    ..|+|+||++
T Consensus         5 L~~~~~~~~~vP~il~~~i~-------~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~----~~d~h~va~l   73 (186)
T cd04407           5 VGSLTSNKTSVPIVLEKLLE-------HVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLE----NYPIHAITGL   73 (186)
T ss_pred             HHHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcc----cCCHHHHHHH
Confidence            444455778888 7889997       467889999999999999999999999999875432122    2699999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002         112 LKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW  191 (240)
Q Consensus       112 LK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf  191 (240)
                      ||.|||+||+||+|.+.|++|+.+.+..+..+++..++.++..||+.|+.+|++|+.||++|+++++.||||++|||+||
T Consensus        74 LK~flReLPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf  153 (186)
T cd04407          74 LKQWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVF  153 (186)
T ss_pred             HHHHHHhCCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhh
Confidence            99999999999999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         192 APNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       192 aP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||+|+|+++.+ +....+.++.++..+|++||+.
T Consensus       154 aP~Ll~~~~~~-d~~~~~~~~~~~~~~v~~li~~  186 (186)
T cd04407         154 APCLLRCPDSS-DPLTSMKDVAKTTTCVEMLIKE  186 (186)
T ss_pred             hccccCCCCCC-CHHHHHHhhhhhHHHHHHHhhC
Confidence            99999987543 2566788999999999999973

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins

Probab=100.00  E-value=1.2e-42  Score=287.41  Aligned_cols=182  Identities=27%  Similarity=0.433  Sum_probs=161.8

Q ss_pred             cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002          39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR  117 (240)
Q Consensus        39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr  117 (240)
                      +++++| ++.+|+.       .++.+|+++|||||++|+..++++|++.+|++... ....+....|+|+||++||+|||
T Consensus        14 ~~~~vP~iv~~~~~-------~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~d~~~va~llK~flr   85 (196)
T cd04395          14 ENPYVPLIVEVCCN-------IVEARGLETVGIYRVPGNNAAISALQEELNRGGFD-IDLQDPRWRDVNVVSSLLKSFFR   85 (196)
T ss_pred             CCCCCChHHHHHHH-------HHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCC-cCccccccccHHHHHHHHHHHHH
Confidence            346788 6788986       57788999999999999999999999999998753 21222334799999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002         118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR  197 (240)
Q Consensus       118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~  197 (240)
                      +||+||+|.+.|+.|+++.+.++.++++..+++++.+||+.|+.+|++|+.||++|+.+++.|+|+++|||+||||+|+|
T Consensus        86 ~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~faP~l~r  165 (196)
T cd04395          86 KLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVR  165 (196)
T ss_pred             hCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhhccccCC
Confidence            99999999999999999988888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      +++.+  ......++..+..+++.||+|||++|
T Consensus       166 ~~~~~--~~~~~~~~~~~~~ii~~LI~~~d~~f  196 (196)
T cd04395         166 TSDDN--METMVTHMPDQCKIVETLIQHYDWFF  196 (196)
T ss_pred             CCCCC--HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence            98754  33445677888999999999999998

ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs

Probab=100.00  E-value=2.5e-42  Score=282.80  Aligned_cols=183  Identities=26%  Similarity=0.413  Sum_probs=164.2

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      +|+.++.+++.+.++| ++.+|+.       .++.+|+++|||||++|+..++++|++.|+.+......  .....|||+
T Consensus         1 ~~~~l~~~~~~~~~iP~~v~~~i~-------~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~--~~~~~d~~~   71 (184)
T cd04385           1 DGPALEDQQLTDNDIPVIVDKCID-------FITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQL--REGEYTVHD   71 (184)
T ss_pred             CCccHHHhhhCCCCCChHHHHHHH-------HHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCC--CcccCCHHH
Confidence            5889999999999999 7889996       46778999999999999999999999999886432111  122379999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV  187 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL  187 (240)
                      ||++||.|||+||+||||.+.|++|+.+.+..+.++++..++.++.+||+.|+.+|++++.||++|+++++.|||++.||
T Consensus        72 va~llK~yLreLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nL  151 (184)
T cd04385          72 VADVLKRFLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNL  151 (184)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHh
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002         188 AIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYY  226 (240)
Q Consensus       188 a~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~  226 (240)
                      |+||||+|+++++.      ...+.....++++.||+||
T Consensus       152 aiv~~P~ll~~~~~------~~~~~~~~~~v~~~Li~~~  184 (184)
T cd04385         152 ALVFGPTLFQTDEH------SVGQTSHEVKVIEDLIDNY  184 (184)
T ss_pred             hhhhccccCCCCcc------chhHHHHHHHHHHHHHhcC
Confidence            99999999999864      2345667899999999998

ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin

Probab=100.00  E-value=1.6e-42  Score=283.51  Aligned_cols=163  Identities=23%  Similarity=0.326  Sum_probs=150.5

Q ss_pred             cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002          41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL  119 (240)
Q Consensus        41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L  119 (240)
                      ...| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|++...++..     .|+|+||++||.|||+|
T Consensus        18 ~~iP~~v~~~i~-------~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~-----~d~h~va~lLK~fLReL   85 (182)
T cd04381          18 IDLPLVFRECID-------YVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEE-----YEPPTVASLLKQYLREL   85 (182)
T ss_pred             CcCChHHHHHHH-------HHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccc-----cChHHHHHHHHHHHHhC
Confidence            4567 6788986       477889999999999999999999999999998766532     69999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002         120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK  199 (240)
Q Consensus       120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~  199 (240)
                      |+||+|.++|+.|.++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|||+||||+|+.+ 
T Consensus        86 P~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~l~~~-  164 (182)
T cd04381          86 PEPLLTKELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQIS-  164 (182)
T ss_pred             CCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCccccCc-
Confidence            9999999999999999988888999999999999999999999999999999999999999999999999999999854 


Q ss_pred             ccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         200 ELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                                      ..+++.||+||+.||++
T Consensus       165 ----------------~~~~~~li~~~~~if~~  181 (182)
T cd04381         165 ----------------NRLLYALLTHCQELFGN  181 (182)
T ss_pred             ----------------HHHHHHHHHHHHHHcCC
Confidence                            45899999999999986

RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int

>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins

Probab=100.00  E-value=3.4e-42  Score=288.70  Aligned_cols=195  Identities=24%  Similarity=0.269  Sum_probs=163.4

Q ss_pred             CCCcchhhhcc-----ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccc
Q psy3002          29 CGPVLSWMELD-----NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIV  102 (240)
Q Consensus        29 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~  102 (240)
                      |.|+-...+.+     ...+| ++.+|+.       .++++|+.+|||||++|+.++++++++.+|++...+..  +...
T Consensus         3 Gv~L~~l~~~~~~~~~~~~iP~~l~~~i~-------~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~--~~~~   73 (216)
T cd04391           3 GVPLSTLLERDQKKVPGSKVPLIFQKLIN-------KLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTF--LWDQ   73 (216)
T ss_pred             CCCHHHHHHHhcccCCCCCCCcHHHHHHH-------HHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCcc--cccc
Confidence            34444444443     34677 6778886       46678999999999999999999999999987433211  1123


Q ss_pred             cCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCC
Q psy3002         103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGM  182 (240)
Q Consensus       103 ~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM  182 (240)
                      .|+|+||++||+|||+||+||+|.+.|+.|.++.+..+.++++.+++.++..||+.|+.+|++|+.||++|++|++.|||
T Consensus        74 ~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM  153 (216)
T cd04391          74 VKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKM  153 (216)
T ss_pred             CCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccccCCC
Confidence            69999999999999999999999999999999888888889999999999999999999999999999999999999999


Q ss_pred             ChhhHHHhhccccccCCccccc----hhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         183 TARNVAIVWAPNLLRCKELEYG----GVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       183 ~~~nLa~vfaP~l~~~~~~~~~----~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      |+.|||+||||+||++......    ....+.+....+.++++||+|++.||..
T Consensus       154 ~~~NLAivfaP~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~  207 (216)
T cd04391         154 NLWNVAMIMAPNLFPPRGKHSKDNESLQEEVNMAAGCANIMRLLIRYQDLLWTV  207 (216)
T ss_pred             ChHHHHHHhccccCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence            9999999999999998764331    2344556677789999999999999973

The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins

Probab=100.00  E-value=2.8e-42  Score=284.48  Aligned_cols=189  Identities=28%  Similarity=0.413  Sum_probs=164.0

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCC-CCCCCCccccCHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIP-DLYTDDTIVQDIH  106 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~-~~~~~~~~~~d~~  106 (240)
                      +.|+-...+.+..+.| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|++... +....+....|+|
T Consensus         2 G~~L~~~~~~~~~~iP~~v~~~i~-------~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~   74 (192)
T cd04398           2 GVPLEDLILREGDNVPNIVYQCIQ-------AIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIH   74 (192)
T ss_pred             CCChHHHHHHcCCCCCHHHHHHHH-------HHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHH
Confidence            3455555566677888 7789986       46678999999999999999999999999988632 2211112236999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||+|||+||+||+|.+.|+.|+++.+..+..++...++.++.+||+.|+.+|++|+.||++|+.+++.|+||+.|
T Consensus        75 ~va~~LK~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~n  154 (192)
T cd04398          75 SVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNN  154 (192)
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhH
Confidence            99999999999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      ||+||||+|++++..      ...+++.+..++++||+||++||
T Consensus       155 Laivf~P~l~~~~~~------~~~~~~~~~~~~~~LI~~~~~iF  192 (192)
T cd04398         155 LAIIWGPTLMNAAPD------NAADMSFQSRVIETLLDNAYQIF  192 (192)
T ss_pred             HHHHHhhhhCCCCcc------chhhHHHHHHHHHHHHHHHHHhC
Confidence            999999999999864      23566778899999999999998

Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs

Probab=100.00  E-value=1.3e-42  Score=285.17  Aligned_cols=185  Identities=21%  Similarity=0.350  Sum_probs=160.3

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH  106 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~  106 (240)
                      +|.|+-+..+.+...+| ++.+|+.       .++++|+++|||||++|+.++++++++.||+|.+....  +....|+|
T Consensus         3 FG~~L~~~~~~~~~~IP~~v~~~i~-------~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~--~~~~~d~~   73 (188)
T cd04383           3 FNGSLEEYIQDSGQAIPLVVESCIR-------FINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLAD--DQNDHDIN   73 (188)
T ss_pred             CCccHHHHHHHCCCCCChHHHHHHH-------HHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCcccc--ccccccHH
Confidence            45666666777778899 6889997       46788999999999999999999999999998754321  12237999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||.|||+||+||+|.+.|+.|+++.+..+..+++..++.++.+||+.|+.+|++|+.||++|+++++.||||++|
T Consensus        74 ~va~lLK~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N  153 (188)
T cd04383          74 SVAGVLKLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYN  153 (188)
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccc
Confidence            99999999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||+||||+|++.++..    ..+......+++++.||.|
T Consensus       154 LAivf~P~L~~~p~~~----~~~~~~~~~~~~~~~li~~  188 (188)
T cd04383         154 LAICFGPTLMPVPEGQ----DQVSCQAHVNELIKTIIIH  188 (188)
T ss_pred             ceeeeeccccCCCCCc----cHHHHHHHHHHHHHHHhcC
Confidence            9999999999987643    1233345678888888865

srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group

>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA

Probab=100.00  E-value=3.8e-42  Score=281.95  Aligned_cols=179  Identities=28%  Similarity=0.434  Sum_probs=157.6

Q ss_pred             hhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHH
Q psy3002          34 SWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLL  112 (240)
Q Consensus        34 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lL  112 (240)
                      +......++.| ++.+|+.       .++.+|+.+|||||++|+..+++++++.+|.+........    .|+|+||++|
T Consensus         6 ~~l~~~~~~iP~ii~~~i~-------~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~----~d~h~va~lL   74 (186)
T cd04406           6 SRLTSEDRSVPLVVEKLIN-------YIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDD----YNIHVIASVF   74 (186)
T ss_pred             HHHHHCCCCCCcHHHHHHH-------HHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCccc----CCHHHHHHHH
Confidence            33334456788 6788986       4678899999999999999999999999998754322222    7999999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhc
Q psy3002         113 KMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWA  192 (240)
Q Consensus       113 K~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfa  192 (240)
                      |.|||+||+||+|.++|++|.++.+..+..+++..++.++.+||+.|+.+|++++.||++|+++++.||||++|||+|||
T Consensus        75 K~fLReLPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~  154 (186)
T cd04406          75 KQWLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFA  154 (186)
T ss_pred             HHHHHhCCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhc
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCccccchhhhhhhhhhHHHHHHHHHh
Q psy3002         193 PNLLRCKELEYGGVAALQGVGVQAVVTEFLVV  224 (240)
Q Consensus       193 P~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~  224 (240)
                      |+|+++++.. +....+.++..+..+|++||.
T Consensus       155 P~ll~~p~~~-d~~~~~~~~~~~~~~~~~~~~  185 (186)
T cd04406         155 PCILRCPDTT-DPLQSVQDISKTTTCVELIVC  185 (186)
T ss_pred             ccccCCCCCC-CHHHHHHHHhhccchhhhhcc
Confidence            9999987643 356678999999999999985

Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife

>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins

Probab=100.00  E-value=3.6e-42  Score=285.32  Aligned_cols=178  Identities=31%  Similarity=0.459  Sum_probs=157.9

Q ss_pred             hhhccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHH-hcCCC----CCCCCCCCccccCHHHHH
Q psy3002          35 WMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHT-FDEDR----IPDLYTDDTIVQDIHSVA  109 (240)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~-~d~~~----~~~~~~~~~~~~d~~~va  109 (240)
                      .+.++..+.+++.+|+.       .++.+|+++|||||++|+..+++++++. +|.+.    ..++..   ...|+|+||
T Consensus        21 ~~~l~~~~~~iv~~ci~-------~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~---~~~d~h~va   90 (203)
T cd04374          21 EAQLDDIGFKFVRKCIE-------AVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN---SEWEIKTIT   90 (203)
T ss_pred             ccccccccHHHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc---ccccHHHHH
Confidence            46688899999999997       5778899999999999999999999875 66541    222221   137999999


Q ss_pred             HHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHH
Q psy3002         110 SLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAI  189 (240)
Q Consensus       110 ~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~  189 (240)
                      ++||+|||+||+||||.++|+.|+.+.+..+.++++..++.++..||+.|+.+|++|+.||++|+++++.||||+.|||+
T Consensus        91 ~lLK~fLReLPePLi~~~~y~~~i~~~~~~~~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi  170 (203)
T cd04374          91 SALKTYLRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGV  170 (203)
T ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence            99999999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             hhccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         190 VWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       190 vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||||+|++++..   ....+.+++.++.++++||+|
T Consensus       171 vf~P~Llr~~~~---~~~~~~~~~~~~~vve~LIeN  203 (203)
T cd04374         171 VFGPTLLRPQEE---TVAAIMDIKFQNIVVEILIEN  203 (203)
T ss_pred             HhccccCCCCCc---cHHHHHHhHHHHHHhhhHhcC
Confidence            999999999864   334566788899999999987

Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=5.1e-42  Score=285.10  Aligned_cols=186  Identities=25%  Similarity=0.400  Sum_probs=159.8

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+-...+.+++++| ++.+|+.       .++.+|+++|||||++|+..+++++++.||.+........    .|+|+
T Consensus         2 G~~L~~~~~~~~~~vP~iv~~ci~-------~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~----~~~h~   70 (203)
T cd04378           2 GVDFSQVPRDFPDEVPFIIKKCTS-------EIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSE----LSPHD   70 (203)
T ss_pred             CCChHHHHHHCCCCCChHHHHHHH-------HHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCcccccc----CCHHH
Confidence            3455555566778899 7889997       5788999999999999999999999999998864322222    69999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQS--------------KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRV  173 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V  173 (240)
                      ||++||+|||+||+||+|.+.|+.|+++.+..              +...++..++.++..||+.|+.+|++|+.||++|
T Consensus        71 va~~LK~fLReLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V  150 (203)
T cd04378          71 ISSVLKLFLRQLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRV  150 (203)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887521              2346788999999999999999999999999999


Q ss_pred             hcCCCCCCCChhhHHHhhccccccCCcccc-chhhhhhhhhhHHHHHHHHHhc
Q psy3002         174 AAHGDKTGMTARNVAIVWAPNLLRCKELEY-GGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       174 ~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~-~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      +++++.|||++.|||+||||+|++++..+. ..+.++.+.+.++.+|++||+|
T Consensus       151 ~~~s~~NkM~~~NLaivf~P~Ll~~~~~~~~~~~~~l~~~~~q~~~ve~li~~  203 (203)
T cd04378         151 AEQFEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN  203 (203)
T ss_pred             HHHHHhhCCCHHHhhhhhccccCCCCCCCcchhHHHHHhhhhhHHHHHHHhhC
Confidence            999999999999999999999999997632 2345577889999999999986

GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge

>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1)

Probab=100.00  E-value=8.3e-42  Score=285.16  Aligned_cols=186  Identities=25%  Similarity=0.462  Sum_probs=157.8

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+-...+.+.+++| ++.+|+.       .++.+|+.+|||||++|+..+++++++.||+|........    .|+|+
T Consensus         2 G~~L~~~~~~~~~~iP~il~~ci~-------~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~----~~~h~   70 (211)
T cd04409           2 GADFAQVAKKSPDGIPFIIKKCTS-------EIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSE----LSPHD   70 (211)
T ss_pred             CCChHHHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCcccccc----CCHHH
Confidence            4455566667778899 6889997       5788999999999999999999999999999864322222    69999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhcCCccHHHHHHH
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQS---K-------------------LQDQLTQMRETVEKLPPPHYRTLEY  165 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~---~-------------------~~~~~~~l~~~l~~Lp~~n~~~L~~  165 (240)
                      ||++||.|||+||+||+|.++|++|+++.+..   +                   ...++.+++.++.+||++||.+|++
T Consensus        71 va~~LK~fLReLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~  150 (211)
T cd04409          71 ISNVLKLYLRQLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQF  150 (211)
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            99999999999999999999999999876421   0                   0234678999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc-hhhhhhhhhhHHHHHHHHHhc
Q psy3002         166 LIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG-GVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       166 l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~-~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      |+.||++|+++++.||||+.|||+||||+|+++...+.. .+.++.++..++.+|++||++
T Consensus       151 L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llrp~~~~~~~~~~~~~~~~~~~~~ve~li~~  211 (211)
T cd04409         151 LIVHLHRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY  211 (211)
T ss_pred             HHHHHHHHHcccccCCCChHHhhhhccccccCCCCCCcchhHHHHhhhhhHHHHHHHHhhC
Confidence            999999999999999999999999999999999865422 345677889999999999975

PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins

Probab=100.00  E-value=7.2e-42  Score=286.10  Aligned_cols=177  Identities=19%  Similarity=0.215  Sum_probs=154.2

Q ss_pred             ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002          42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP  120 (240)
Q Consensus        42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp  120 (240)
                      .+| ++.+|+.       .++++|+++|||||++|+..+++++++.+|.+......   ....++|+||++||.|||+||
T Consensus        26 ~IP~~l~~~i~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d---~~~~~~~~va~lLK~flReLP   95 (213)
T cd04397          26 RIPALIDDIIS-------AMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPD---LSKENPVQLAALLKKFLRELP   95 (213)
T ss_pred             CCCHHHHHHHH-------HHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccc---cccCcHHHHHHHHHHHHHhCC
Confidence            577 6788986       46778999999999999999999999999998643211   112689999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCC-----CCCCChhhHHHhhcccc
Q psy3002         121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGD-----KTGMTARNVAIVWAPNL  195 (240)
Q Consensus       121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~-----~NkM~~~nLa~vfaP~l  195 (240)
                      +||+|.++|+.|+++.+..+.+++...++.++..||+.||.+|++|+.||++|+.+++     .||||++|||+||||+|
T Consensus        96 epLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~NkM~~~NLAivf~P~L  175 (213)
T cd04397          96 DPLLTFKLYRLWISSQKIEDEEERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETGSKMDIHNLATVITPNI  175 (213)
T ss_pred             CccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCCCcCChHHhHHhhcccc
Confidence            9999999999999999888889999999999999999999999999999999998764     59999999999999999


Q ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         196 LRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      ++++..+.   ....+......+|++||+||+.||.
T Consensus       176 l~~~~~~~---~~~~~~~~~~~vv~~LI~n~~~if~  208 (213)
T cd04397         176 LYSKTDNP---NTGDEYFLAIEAVNYLIENNEEFCE  208 (213)
T ss_pred             cCCCCCCc---chHHHHHHHHHHHHHHHHhHHHHhc
Confidence            99987542   2233445678999999999999996

Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3)

Probab=100.00  E-value=1.7e-41  Score=280.45  Aligned_cols=174  Identities=27%  Similarity=0.458  Sum_probs=156.1

Q ss_pred             cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002          41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL  119 (240)
Q Consensus        41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L  119 (240)
                      .+.| ++.+|+.       .++++|+++|||||++|+..+++++++.+|+|...++...    .|+|+||++||.|||+|
T Consensus        21 ~~iP~il~~~i~-------~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~----~d~~~va~~LK~~lr~L   89 (195)
T cd04404          21 EPIPPVVRETVE-------YLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQY----EDVHLPAVILKTFLREL   89 (195)
T ss_pred             CCCChHHHHHHH-------HHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccc----cCHHHHHHHHHHHHHhC
Confidence            5777 6788886       4667899999999999999999999999999876554322    59999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002         120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK  199 (240)
Q Consensus       120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~  199 (240)
                      |+||+|.+.|+.+.++.+. +.+++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+|+++|||+||||+|+|++
T Consensus        90 p~pLi~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~  168 (195)
T cd04404          90 PEPLLTFDLYDDIVGFLNV-DKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAK  168 (195)
T ss_pred             CCccCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCC
Confidence            9999999999999988764 367889999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         200 ELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      +..    ..++++...+.++++||+||++||
T Consensus       169 ~~~----~~l~~~~~~~~~~~~LI~~~~~iF  195 (195)
T cd04404         169 DAS----MSLSAINPINTFTKFLLDHQDEIF  195 (195)
T ss_pred             Ccc----cCHHHHHHHHHHHHHHHHhHHhhC
Confidence            742    346678888999999999999998

It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins

Probab=100.00  E-value=2.5e-41  Score=280.65  Aligned_cols=183  Identities=22%  Similarity=0.234  Sum_probs=156.8

Q ss_pred             cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002          39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR  117 (240)
Q Consensus        39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr  117 (240)
                      ++.++| ++.+|+..       +++ |+++|||||++|+..+++++++.+|+|....  ..    .++|+||++||.|||
T Consensus        16 ~~~~IP~il~~~~~~-------l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~--~~----~~~~~vaslLK~flR   81 (202)
T cd04394          16 EYGNVPKFLVDACTF-------LLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL--SS----ALPCDVAGLLKQFFR   81 (202)
T ss_pred             CCCCCChHHHHHHHH-------HHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc--cc----cCHHHHHHHHHHHHh
Confidence            456788 57788852       333 6999999999999999999999999987532  22    589999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002         118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR  197 (240)
Q Consensus       118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~  197 (240)
                      +||+||+|.+.|+.|.++....+.+++..+++.++.+||+.|+.+|++|+.||++|++|++.||||+.|||+||||+|++
T Consensus        82 eLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP~L~~  161 (202)
T cd04394          82 ELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLFQ  161 (202)
T ss_pred             cCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcceeec
Confidence            99999999999999999988888888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccc-chhhhhhhhhhHHHHHHHHHhcchhcCCCCCCCC
Q psy3002         198 CKELEY-GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA  237 (240)
Q Consensus       198 ~~~~~~-~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~  237 (240)
                      +.+... .......++..++.+|++||+|++.||.  .|.+
T Consensus       162 ~~~~~~~~s~~~~~~~~~~~~vv~~lI~~~~~i~~--vp~~  200 (202)
T cd04394         162 SEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGI--VPDF  200 (202)
T ss_pred             CCCcccccchhHHHhHHHHHHHHHHHHHHHHHHcc--CCcc
Confidence            876421 1112234567789999999999999994  5544

The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins

Probab=100.00  E-value=2.3e-41  Score=285.05  Aligned_cols=181  Identities=22%  Similarity=0.306  Sum_probs=153.0

Q ss_pred             ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002          38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF  116 (240)
Q Consensus        38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl  116 (240)
                      ....++| ++.+|+.       .++++|+++|||||++|+..++++|++.||++.+.... .+....++|+||++||+||
T Consensus        27 ~~~~~IP~iv~~ci~-------~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~-~~~~~~~vh~va~lLK~fL   98 (225)
T cd04396          27 YVYGYIPVVVAKCGV-------YLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKS-FDWDGYTVHDAASVLRRYL   98 (225)
T ss_pred             ccCCCCChHHHHHHH-------HHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCc-CCccCCCHHHHHHHHHHHH
Confidence            3445678 6789986       46788999999999999999999999999987532111 1112369999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCC
Q psy3002         117 RELPNPLCTYQLYHSFVGAVQQ-----------------SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDK  179 (240)
Q Consensus       117 r~Lp~pLi~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~  179 (240)
                      |+||+||+|.++|++|.++...                 .+.++++..++.++.+||+.|+.+|++|+.||++|+++++.
T Consensus        99 ReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~  178 (225)
T cd04396          99 NNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDK  178 (225)
T ss_pred             HhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999887642                 45678899999999999999999999999999999999999


Q ss_pred             CCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         180 TGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       180 NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      ||||++|||+||||+|+++++....    ..+...++.+|++||+|++++.
T Consensus       179 NkM~~~NLAivfaP~Ll~~~~~~~~----~~~~~~~~~~ve~lI~~~~~~~  225 (225)
T cd04396         179 NLMTASNLAAIFQPGILSHPDHEMD----PKEYKLSRLVVEFLIEHQDKFL  225 (225)
T ss_pred             ccCChhhhheeeccccCCCCccccC----HHHHHHHHHHHHHHHHhHHhhC
Confidence            9999999999999999998764321    2345667899999999999863

Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins

Probab=100.00  E-value=5.7e-41  Score=276.94  Aligned_cols=165  Identities=27%  Similarity=0.376  Sum_probs=147.8

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHH
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~  107 (240)
                      |.|+....+.++.++| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|++.......  ....|+|+
T Consensus         2 Gv~L~~~~~r~~~~IP~iv~~ci~-------~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~--~~~~d~h~   72 (196)
T cd04387           2 GVKISTVTKRERSKVPYIVRQCVE-------EVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVM--LSEMDVNA   72 (196)
T ss_pred             CCCHHHHHHhcCCCCChHHHHHHH-------HHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccc--cccCCHHH
Confidence            4566667778888899 7889997       467889999999999999999999999999876422211  12379999


Q ss_pred             HHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhH
Q psy3002         108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNV  187 (240)
Q Consensus       108 va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nL  187 (240)
                      ||++||.|||+||+||+|.++|+.|.++.+..++.++...++.++.+||+.|+.+|.+|+.||++|+++++.||||+.||
T Consensus        73 va~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL  152 (196)
T cd04387          73 IAGTLKLYFRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNL  152 (196)
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHH
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccCCccc
Q psy3002         188 AIVWAPNLLRCKELE  202 (240)
Q Consensus       188 a~vfaP~l~~~~~~~  202 (240)
                      |+||||+|++++..+
T Consensus       153 Aivf~P~Llr~~~~~  167 (196)
T cd04387         153 ATVFGPTLLRPSEKE  167 (196)
T ss_pred             HHHHccccCCCCccc
Confidence            999999999998754

Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch

>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins

Probab=100.00  E-value=1.6e-40  Score=272.35  Aligned_cols=175  Identities=25%  Similarity=0.413  Sum_probs=150.7

Q ss_pred             hhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHH
Q psy3002          34 SWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLL  112 (240)
Q Consensus        34 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lL  112 (240)
                      .......+++| ++.+|+.       .++++|+.+|||||++|+..+++++++.+|++...++...   ..|+|+||++|
T Consensus         6 ~~~~~~~~~IP~~l~~~i~-------~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~va~~l   75 (185)
T cd04373           6 ANVVTSEKPIPIFLEKCVE-------FIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSK---DFTVNAVAGAL   75 (185)
T ss_pred             HHHHhCCCCCCcHHHHHHH-------HHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHH
Confidence            33444677888 6788996       4677899999999999999999999999999876655322   26899999999


Q ss_pred             HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhc
Q psy3002         113 KMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWA  192 (240)
Q Consensus       113 K~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfa  192 (240)
                      |+|||+||+||+|++.|+.|.++.+.++..+++..++.++..||+.||.+|++|+.||++|+++++.|+||++|||+|||
T Consensus        76 K~fLreLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~  155 (185)
T cd04373          76 KSFFSELPDPLIPYSMHLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFW  155 (185)
T ss_pred             HHHHhcCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHc
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         193 PNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       193 P~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      |+|+++...+   +..+..    +.+++.+|++
T Consensus       156 P~L~~~~~~~---~~~~~~----~~~~q~~i~~  181 (185)
T cd04373         156 PTLMRPDFTS---MEALSA----TRIYQTIIET  181 (185)
T ss_pred             cccCCCCCCC---HHHHHc----cHHHHHHHHH
Confidence            9999987753   333333    4445555554

p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins

Probab=100.00  E-value=2e-40  Score=272.04  Aligned_cols=181  Identities=31%  Similarity=0.431  Sum_probs=158.7

Q ss_pred             chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHH
Q psy3002          33 LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASL  111 (240)
Q Consensus        33 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~l  111 (240)
                      ++.+..++++.| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|++........    .|+|+||++
T Consensus         5 L~~~~~~~~~vP~~l~~~~~-------~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~----~~~~~va~~   73 (186)
T cd04377           5 LSSLTSEDRSVPLVLEKLLE-------HIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLED----YPIHVITSV   73 (186)
T ss_pred             HHHHHhCCCCCChHHHHHHH-------HHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCccc----CCHHHHHHH
Confidence            344445667788 7788986       4667899999999999999999999999999843211222    699999999


Q ss_pred             HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhh
Q psy3002         112 LKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVW  191 (240)
Q Consensus       112 LK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vf  191 (240)
                      ||+|||+||+||+|++.|++|.++....+..+++..++.++.+||+.|+.+|.+|+.||++|+.+++.|||++.|||+||
T Consensus        74 LK~flr~LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf  153 (186)
T cd04377          74 LKQWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVF  153 (186)
T ss_pred             HHHHHHcCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         192 APNLLRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       192 aP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||+|+|+++.. +....+.++.....++++||+.
T Consensus       154 ~P~ll~~~~~~-~~~~~~~d~~~~~~~~e~li~~  186 (186)
T cd04377         154 APCILRCPDTA-DPLQSLQDVSKTTTCVETLIKE  186 (186)
T ss_pred             hhHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhhC
Confidence            99999998643 2345788899999999999974

Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer

>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins

Probab=100.00  E-value=8.9e-41  Score=275.03  Aligned_cols=179  Identities=24%  Similarity=0.416  Sum_probs=153.8

Q ss_pred             CCCcchhhhcc-----ccccc-cccccccccccccccccCC-CCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002          29 CGPVLSWMELD-----NRGRR-LLGKCFWNSLSHFFMPEEC-PLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI  101 (240)
Q Consensus        29 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~~~~e~~-gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~  101 (240)
                      |.|+-..++.+     ..+.| ++.+|+.       .++++ ++.+|||||++|+..+++++++.+|++.+.+.... ..
T Consensus         3 Gv~L~~~~~~~~~~~~~~~iP~iv~~~i~-------~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~-~~   74 (190)
T cd04400           3 GSPLEEAVELSSHKYNGRDLPSVVYRCIE-------YLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSS-SL   74 (190)
T ss_pred             CCcHHHHHHHhccccCCCCCChHHHHHHH-------HHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCcccc-cc
Confidence            44544444442     45677 6788886       34444 58999999999999999999999999876554332 22


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCC
Q psy3002         102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQS-KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKT  180 (240)
Q Consensus       102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~N  180 (240)
                      ..|+|+||++||.|||+||+||+|.+.|+.|.++.+.. +..+++..++.++.+||+.|+.+|++|+.||++|+.+++.|
T Consensus        75 ~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~N  154 (190)
T cd04400          75 YPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVN  154 (190)
T ss_pred             ccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            47999999999999999999999999999999988755 78899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         181 GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       181 kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      +||++|||+||||+|+++.                 .++..+|++||.||++
T Consensus       155 kM~~~NLa~vf~P~L~~~~-----------------~~~~~~~~~~~~~f~~  189 (190)
T cd04400         155 KMNLRNVCIVFSPTLNIPA-----------------GIFVLFLTDFDCIFGG  189 (190)
T ss_pred             CCChHHhhhhcCCCCCCCH-----------------HHHHHHHHHHHHHcCC
Confidence            9999999999999998764                 3889999999999985

Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase)

Probab=100.00  E-value=2.3e-40  Score=272.57  Aligned_cols=166  Identities=25%  Similarity=0.333  Sum_probs=146.0

Q ss_pred             cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002          41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTIVQDIHSVASLLKMYFRE  118 (240)
Q Consensus        41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~~~d~~~va~lLK~flr~  118 (240)
                      +..| ++.+|+.       .+|++|+++|||||++|+.. +.++++.||.+.. .++     ...|+|+||++||.|||+
T Consensus        13 ~~~P~iv~~ci~-------~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~-----~~~dv~~va~~LK~ylRe   79 (200)
T cd04388          13 DVAPPLLIKLVE-------AIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDL-----EQFDVAALADALKRYLLD   79 (200)
T ss_pred             CCCCHHHHHHHH-------HHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCc-----ccccHHHHHHHHHHHHHh
Confidence            5566 7889997       68999999999999999775 7889999998632 333     237999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccc
Q psy3002         119 LPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL  195 (240)
Q Consensus       119 Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~--~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l  195 (240)
                      ||+||||.+.|++|+++.+ ..+.++++..++.++.  .||+.|+.+|+||+.||.+|++|++.|+||++|||+||||+|
T Consensus        80 LPePLip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL  159 (200)
T cd04388          80 LPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLL  159 (200)
T ss_pred             CCCccCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhh
Confidence            9999999999999999875 5677889999999997  899999999999999999999999999999999999999999


Q ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         196 LRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||++..+      ..+...+..+|+.||.+
T Consensus       160 ~r~~~~~------~~~~~~~~~vvE~Li~~  183 (200)
T cd04388         160 FRFQPAS------SDSPEFHIRIIEVLITS  183 (200)
T ss_pred             cCCCccc------ccchhhHHHHHHHHHHH
Confidence            9998652      24456789999999985

This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p

>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins

Probab=100.00  E-value=4.6e-40  Score=273.49  Aligned_cols=179  Identities=25%  Similarity=0.356  Sum_probs=148.8

Q ss_pred             cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCccccCHHHHHHHHHHHH
Q psy3002          39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTIVQDIHSVASLLKMYF  116 (240)
Q Consensus        39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~~~d~~~va~lLK~fl  116 (240)
                      ...++| ++.+|+.       .++.+|+++|||||++|+..++++|++.||++.. .++..  ....|+|+||++||+||
T Consensus        14 ~~~~IP~iv~~ci~-------~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~--~~~~dvh~vA~lLK~fL   84 (207)
T cd04379          14 ESRDVPIVLQKCVQ-------EIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSE--ELYPDINVITGVLKDYL   84 (207)
T ss_pred             CCCCcChHHHHHHH-------HHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCCh--hhcccHHHHHHHHHHHH
Confidence            345678 6789996       4678899999999999999999999999998753 22221  12358999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhcC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcc
Q psy3002         117 RELPNPLCTYQLYHSFVGAVQQS---KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAP  193 (240)
Q Consensus       117 r~Lp~pLi~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP  193 (240)
                      |+||+||+|.++|+.|+++....   +...+...++.++.+||+.|+.+|++|+.||++|+++++.||||+.|||+||||
T Consensus        85 ReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P  164 (207)
T cd04379          85 RELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGP  164 (207)
T ss_pred             HhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhcc
Confidence            99999999999999999987643   334456778899999999999999999999999999999999999999999999


Q ss_pred             ccccCCccccc---------hhhhhhhhhhHHHHHHHHHhcc
Q psy3002         194 NLLRCKELEYG---------GVAALQGVGVQAVVTEFLVVYY  226 (240)
Q Consensus       194 ~l~~~~~~~~~---------~~~~~~~~~~~~~vv~~LI~~~  226 (240)
                      +|+++++....         ...+..++.....++++||+-|
T Consensus       165 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (207)
T cd04379         165 VLMFCSQEFSRYGISPTSKMAAVSTVDFKQHIEVLHYLLQIW  206 (207)
T ss_pred             ccCCCCcccccccCCCCccccccchhhHHHHHHHHHHHHHhc
Confidence            99999875421         1222345666788999999865

Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins

Probab=100.00  E-value=4.4e-40  Score=274.79  Aligned_cols=193  Identities=18%  Similarity=0.157  Sum_probs=158.7

Q ss_pred             CCCcchhhhccccccc-cccccccccccccccccCCC--C----CCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002          29 CGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECP--L----GDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI  101 (240)
Q Consensus        29 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~g--l----~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~  101 (240)
                      +.|+-...+.++.++| ++.+|+..       ++++|  +    ..+||||++|+.+++++||+.||++...+....+..
T Consensus         2 Gv~L~~~~~~~~~~VP~vV~~ci~~-------ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~   74 (212)
T cd04399           2 GVDLETRCRLDKKVVPLIVSAILSY-------LDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILK   74 (212)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHH-------HHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccc
Confidence            3455555566777899 67899862       44422  3    334999999999999999999999977654331122


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh------cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc
Q psy3002         102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ------QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAA  175 (240)
Q Consensus       102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~  175 (240)
                      ..|+|+||++||.|||+||+||+|+++|+.|.++..      ..+.++|+.+++.++..||+.|+.+|++|+.||++|++
T Consensus        75 ~~dv~~va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~~LP~~n~~~L~~li~hL~rv~~  154 (212)
T cd04399          75 KFEPSTVASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIE  154 (212)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999987753      25678999999999999999999999999999999998


Q ss_pred             CCCCC---CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         176 HGDKT---GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       176 ~s~~N---kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      ++..|   ||+++|||+||||+|+|+.....    ...+...+..++++||+||+.||++
T Consensus       155 ~~~~~~~~kM~~~nLa~vfgp~llr~~~~~~----~~~~~~~~~~~~e~Li~~~~~iF~~  210 (212)
T cd04399         155 ITKMGESEEEYADKLATSLSREILRPIIESL----LTIGDKHGYKFFRDLLTHKDQIFSE  210 (212)
T ss_pred             HHhcccccccCHHHHHHHhhhhhcCCCcccc----cccccHHHHHHHHHHHHhHHHhccc
Confidence            87665   69999999999999999976532    1234567889999999999999985

Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins

Probab=100.00  E-value=7.5e-40  Score=269.30  Aligned_cols=171  Identities=23%  Similarity=0.333  Sum_probs=152.5

Q ss_pred             ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002          40 NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE  118 (240)
Q Consensus        40 ~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~  118 (240)
                      .++.| ++.+|+.       .++.+|+++|||||++|+..+++++++.+|+|...++...    .|+|+||++||+|||+
T Consensus        17 ~~~vP~il~~~i~-------~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~----~d~~~va~~lK~flr~   85 (189)
T cd04393          17 ENGVPAVVRHIVE-------YLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKE----ADVCSAASLLRLFLQE   85 (189)
T ss_pred             CCCCChHHHHHHH-------HHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCcccc----CCHHHHHHHHHHHHHh
Confidence            55788 6788886       4667899999999999999999999999999987766543    7999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhc-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002         119 LPNPLCTYQLYHSFVGAVQQ-SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR  197 (240)
Q Consensus       119 Lp~pLi~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~  197 (240)
                      ||+||+|.+.|+.|+++++. .+.+++...++.++.+||+.|+.+|.+++.||++|+++++.|+||+.|||+||||+||+
T Consensus        86 Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf~P~l~~  165 (189)
T cd04393          86 LPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFGPDVFH  165 (189)
T ss_pred             CCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhccCceeC
Confidence            99999999999999998764 36778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         198 CKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      .+..    ...+.+.....++++.||+|
T Consensus       166 ~~~~----~~~~~~~~~~~~~~~~li~~  189 (189)
T cd04393         166 VYTD----VEDMKEQEICSRIMAKLLEN  189 (189)
T ss_pred             CCCC----cccHHHHHHHHHHHHHHhcC
Confidence            8873    23445567789999999987

The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.

>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain

Probab=100.00  E-value=2.7e-38  Score=259.39  Aligned_cols=165  Identities=25%  Similarity=0.272  Sum_probs=140.9

Q ss_pred             ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002          42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP  120 (240)
Q Consensus        42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp  120 (240)
                      .+| ++.+|+..      +.+.+|+.+|||||++|+..+++++++.+|++.... ..    ..|+|+||++||.|||+||
T Consensus        20 ~iP~il~~~i~~------l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~-~~----~~d~h~va~lLK~fLReLp   88 (187)
T cd04389          20 KLPWILTFLSEK------VLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL-SG----LEDPHVPASLLKLWLRELE   88 (187)
T ss_pred             CCCchHHHHHHH------HHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc-cc----cCCHHHHHHHHHHHHHhCC
Confidence            456 56677753      235679999999999999999999999999987542 22    2699999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcC--CCCCCCChhhHHHhhccccccC
Q psy3002         121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAH--GDKTGMTARNVAIVWAPNLLRC  198 (240)
Q Consensus       121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~--s~~NkM~~~nLa~vfaP~l~~~  198 (240)
                      +||+|.+.|++++.....      ...+++++.+||+.|+.+|.+|+.||++|+++  ++.||||++|||+||||+|+++
T Consensus        89 ePli~~~~~~~~i~~~~~------~~~~~~li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAivf~P~l~~~  162 (187)
T cd04389          89 EPLIPDALYQQCISASED------PDKAVEIVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMVFAPNILRC  162 (187)
T ss_pred             CCCCCHHHHHHHHHhhcC------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHccccCCC
Confidence            999999999999876531      23567889999999999999999999999975  4789999999999999999998


Q ss_pred             CccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         199 KELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      +..+  ....+++......+++.||+|
T Consensus       163 ~~~~--~~~~~~~~~~~~~~~~~lI~~  187 (187)
T cd04389         163 TSDD--PRVIFENTRKEMSFLRTLIEH  187 (187)
T ss_pred             CCCC--HHHHHHccHHHHHHHHHHhcC
Confidence            7654  566678889999999999987

Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases

Probab=100.00  E-value=3.4e-36  Score=244.10  Aligned_cols=170  Identities=38%  Similarity=0.609  Sum_probs=152.5

Q ss_pred             cc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCC-CCCCccccCHHHHHHHHHHHHhhCC
Q psy3002          43 RR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDL-YTDDTIVQDIHSVASLLKMYFRELP  120 (240)
Q Consensus        43 ~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~-~~~~~~~~d~~~va~lLK~flr~Lp  120 (240)
                      .| ++.+|+.       .+++.|+.+|||||++|+..+++++++.++++...+. ...    .|+|++|++||.|||+||
T Consensus         3 vP~~l~~~~~-------~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~va~~lK~~Lr~Lp   71 (174)
T smart00324        3 IPIIVEKCIE-------YLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSE----YDVHDVAGLLKLFLRELP   71 (174)
T ss_pred             CChHHHHHHH-------HHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCccccc----CCHHHHHHHHHHHHHhCC
Confidence            45 5667775       4667899999999999999999999999999987652 222    799999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002         121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE  200 (240)
Q Consensus       121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~  200 (240)
                      +||+|.+.|+.|.++.+..+.+++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+||++|||+||||+|++++.
T Consensus        72 ~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~  151 (174)
T smart00324       72 EPLIPYELYEEFIEAAKVEDETERLRALRELISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPD  151 (174)
T ss_pred             CccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCc
Confidence            99999999999999998888899999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002         201 LEYGGVAALQGVGVQAVVTEFLVVYY  226 (240)
Q Consensus       201 ~~~~~~~~~~~~~~~~~vv~~LI~~~  226 (240)
                      .+   ............++++||+|.
T Consensus       152 ~~---~~~~~~~~~~~~~i~~li~~~  174 (174)
T smart00324      152 GE---VASLKDIRHQNTVVETLIENA  174 (174)
T ss_pred             cc---HHHHHHHHHHHHHHHHHHhcC
Confidence            63   224677888999999999973

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.

>KOG4407|consensus

Probab=100.00  E-value=1e-36  Score=292.21  Aligned_cols=173  Identities=29%  Similarity=0.477  Sum_probs=160.6

Q ss_pred             cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCC-CCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh
Q psy3002          59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIP-DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ  137 (240)
Q Consensus        59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~-~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~  137 (240)
                      ++|++||+..||||||||...|..|++.++.+.+. +....++.|.|+++|.+|||.|||.|||||+|..+|..|+++-+
T Consensus      1184 vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK~F~RkLPepL~t~~~Y~~FIeAnr 1263 (1973)
T KOG4407|consen 1184 VVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIEANR 1263 (1973)
T ss_pred             HHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHHHHHHhCCcccccccchhhhhhhcc
Confidence            68999999999999999999999999999988532 23334678899999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHH
Q psy3002         138 QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAV  217 (240)
Q Consensus       138 ~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~  217 (240)
                      ..+.-+|+..|++++.+||..+|.+|++|+.||++|+.|++.|||-..|||++|||+|+|+++++  ......++..+++
T Consensus      1264 k~~~l~Rl~~Lr~l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FGPsiVRts~Dn--m~tmVthM~dQck 1341 (1973)
T KOG4407|consen 1264 KSTHLNRLHKLRNLLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFGPSIVRTSDDN--MATMVTHMSDQCK 1341 (1973)
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHhcccccccccccceeEEeccceeccCCcc--HHHHhhcchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999876  4445689999999


Q ss_pred             HHHHHHhcchhcCCCC
Q psy3002         218 VTEFLVVYYAAIFDKK  233 (240)
Q Consensus       218 vv~~LI~~~~~iF~~~  233 (240)
                      ||+.||.+||++|++.
T Consensus      1342 IVEtLI~~~dwfF~es 1357 (1973)
T KOG4407|consen 1342 IVETLIHYNDWFFDES 1357 (1973)
T ss_pred             HHHHHHhhhhheeccC
Confidence            9999999999999864

>KOG1451|consensus

Probab=100.00  E-value=2.1e-35  Score=266.84  Aligned_cols=221  Identities=27%  Similarity=0.371  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccC--CCcchhhhccccccccccccccccccccccccCCCCCCcceeeecCCcHHHH
Q psy3002           4 QQIYMKRLLTKYLERLSTIAGSLINC--GPVLSWMELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLC   81 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~   81 (240)
                      -|..+.++.--|++.+-...-+...+  -...-++++|.-|..++.+|+.       .+|+.|++++|+||.-|..++++
T Consensus       348 mQALSE~drrlWmeAMDG~ep~Y~s~~~~~~~~~~qLd~iGF~fvrkCI~-------i~Et~GI~eqGlYR~vGvns~VQ  420 (812)
T KOG1451|consen  348 MQALSEKDRRLWMEAMDGAEPSYTSGENCSTYKQTQLDDIGFEFVRKCID-------ILETSGIHEQGLYRNVGVNSKVQ  420 (812)
T ss_pred             hHhhhhhHHHHHHHHhcCCCccccCccccchhhhhhhhhhhHHHHHHHHH-------HHHhcCcccccchhhccchHHHH
Confidence            37788889999999887775555444  3455577899999999999997       68999999999999999999999


Q ss_pred             HHHHHh-cCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHH
Q psy3002          82 ITRHTF-DEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHY  160 (240)
Q Consensus        82 ~L~~~~-d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~  160 (240)
                      +|...+ |.....+...+....+|+-++++.||.|||.||+||++++++..|+.+++..|.+-|+.+++.++.+||..||
T Consensus       421 Klln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLVHkLPEKNR  500 (812)
T KOG1451|consen  421 KLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPLMTYELHKVFINAAKSDNQTYRVDAIHSLVHKLPEKNR  500 (812)
T ss_pred             HHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchhhHHHHHHHHHHHHhccchhhhHHHHHHHHHhccHhhH
Confidence            987754 4333222221111337999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       161 ~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      ..|..|++||..|+.|+..|.||..||++||||+|+|+.+.   ..+++.+++.++-||+.||+||++||...+
T Consensus       501 eMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQEE---TVAAiMdIKFQNIVVEILIEnyeKIF~t~P  571 (812)
T KOG1451|consen  501 EMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQEE---TVAAIMDIKFQNIVVEILIENYEKIFKTKP  571 (812)
T ss_pred             HHHHHHHHHHHHHHhhhhcccccccccceeecccccCchHH---HHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence            99999999999999999999999999999999999999986   677788999999999999999999998543

>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases

Probab=100.00  E-value=1.5e-34  Score=232.50  Aligned_cols=167  Identities=31%  Similarity=0.527  Sum_probs=149.9

Q ss_pred             cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCC
Q psy3002          45 LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLC  124 (240)
Q Consensus        45 ~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi  124 (240)
                      ++.+|+.       .++++|+.+|||||++|+..+++++++.++.+........    .|+|++|++||.|||+||+||+
T Consensus         3 ~l~~~~~-------~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~----~~~~~va~~lK~~l~~Lp~pli   71 (169)
T cd00159           3 IIEKCIE-------YLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLED----YDVHDVASLLKLYLRELPEPLI   71 (169)
T ss_pred             HHHHHHH-------HHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccc----cCHHHHHHHHHHHHHcCCCccC
Confidence            3455665       3566899999999999999999999999999987642223    7999999999999999999999


Q ss_pred             ChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc
Q psy3002         125 TYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG  204 (240)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~  204 (240)
                      |.+.|+.++.+....+...+...++.++..||+.|+.+|.+++.||++|+.+++.|+|++.|||+||||+|++++..+  
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~--  149 (169)
T cd00159          72 PFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD--  149 (169)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc--
Confidence            999999999999988899999999999999999999999999999999999999999999999999999999998753  


Q ss_pred             hhhhhhhhhhHHHHHHHHHhc
Q psy3002         205 GVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       205 ~~~~~~~~~~~~~vv~~LI~~  225 (240)
                       .........+..++++||+|
T Consensus       150 -~~~~~~~~~~~~~~~~li~~  169 (169)
T cd00159         150 -DELLEDIKKLNEIVEFLIEN  169 (169)
T ss_pred             -HHHHHHhHHHHHHHHHHHhC
Confidence             34456778889999999975

Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.

>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins

Probab=100.00  E-value=5.8e-34  Score=239.48  Aligned_cols=180  Identities=19%  Similarity=0.237  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCC--Cc----chhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCc
Q psy3002           5 QIYMKRLLTKYLERLSTIAGSLINCG--PV----LSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPS   77 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~s~~~~~--~~----~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~   77 (240)
                      ..|...++...++.+.....-.....  ..    ..........+| ++-+|+.       .++++|+.+|||||++|+.
T Consensus         6 ~~~~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~-------~L~~~gl~~eGiFR~~G~~   78 (220)
T cd04380           6 GVYLPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVD-------YLYTRGLAQEGLFEEPGLP   78 (220)
T ss_pred             eeEecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHH-------HHHHcCCcccCcccCCCcc
Confidence            34455555555666655443333211  00    011112333444 4556665       3667899999999999999


Q ss_pred             HH----HHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy3002          78 LP----LCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE  153 (240)
Q Consensus        78 ~~----i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  153 (240)
                      .+    ++++++.+|++....  ..    .|+|+||++||.|||+||+||+|.++|+.|.++... +    ...++.++.
T Consensus        79 ~~~~~~i~~l~~~ld~~~~~~--~~----~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~----~~~~~~ll~  147 (220)
T cd04380          79 SEPGELLAEIRDALDTGSPFN--SP----GSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-N----EEDKRQVIR  147 (220)
T ss_pred             cchHHHHHHHHHHHhCCCCCC--CC----CCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-c----HHHHHHHHH
Confidence            99    999999999996543  22    799999999999999999999999999999988621 1    234677888


Q ss_pred             -cCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc
Q psy3002         154 -KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE  202 (240)
Q Consensus       154 -~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~  202 (240)
                       .||+.|+.+|.||+.||++|+++++.|+|+++|||+||||+|++++...
T Consensus       148 ~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~~~  197 (220)
T cd04380         148 ISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPPRA  197 (220)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCccc
Confidence             9999999999999999999999999999999999999999999999764

OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas

>KOG4270|consensus

Probab=100.00  E-value=2.4e-33  Score=258.77  Aligned_cols=172  Identities=29%  Similarity=0.410  Sum_probs=158.4

Q ss_pred             cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002          59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ  138 (240)
Q Consensus        59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~  138 (240)
                      +..++|+..|||||++|..++++.+|+++|.|..+... .    .|||++||+||.||||||+|++++++|++|+.+.+.
T Consensus       177 l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~-~----iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~  251 (577)
T KOG4270|consen  177 LLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL-Y----IDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNC  251 (577)
T ss_pred             hhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc-c----CCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhc
Confidence            45689999999999999999999999999999877654 3    799999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHH
Q psy3002         139 SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVV  218 (240)
Q Consensus       139 ~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~v  218 (240)
                      .+++++.+.++.++..||+.|+..|+|+++||..|.++++.|||+++|||+||||++++..++-...+...+-......+
T Consensus       252 ~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~l  331 (577)
T KOG4270|consen  252 ENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGL  331 (577)
T ss_pred             cCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998655556666777777888


Q ss_pred             HHHHHhcchhcCCCCCC
Q psy3002         219 TEFLVVYYAAIFDKKNP  235 (240)
Q Consensus       219 v~~LI~~~~~iF~~~~~  235 (240)
                      ++..|++++..|+....
T Consensus       332 ie~~l~~~~~~~~g~~~  348 (577)
T KOG4270|consen  332 IEKTLEERDTSFPGELE  348 (577)
T ss_pred             HHHHHHhhhccCCcccc
Confidence            99999999999987663

>KOG2200|consensus

Probab=100.00  E-value=2.1e-33  Score=254.33  Aligned_cols=195  Identities=22%  Similarity=0.278  Sum_probs=165.9

Q ss_pred             cCCCcchhhhcccccccc-ccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002          28 NCGPVLSWMELDNRGRRL-LGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH  106 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~  106 (240)
                      ++-|+....+......|. +.+.+.       .++++|++++||||++|.+++|+.||+.++...+......+.  ...|
T Consensus       301 FGVPL~vll~rtG~~lP~~iQq~m~-------~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~--~~~~  371 (674)
T KOG2200|consen  301 FGVPLTVLLQRTGQPLPLSIQQAMR-------YLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDS--QSAH  371 (674)
T ss_pred             eecCceeeeccCCCcCcHHHHHHHH-------HHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccch--hhhh
Confidence            555777777766666663 344443       477899999999999999999999999998876664433322  6899


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||+|||+||+||||.++.+.|..+++.....+++++++.+|..||++||.+|+.|+.||++|+.++++|+||+.|
T Consensus       372 DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~e~N~MT~~N  451 (674)
T KOG2200|consen  372 DVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANEEENQMTLMN  451 (674)
T ss_pred             HHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhHhhcccchhh
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccc---------------hhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         187 VAIVWAPNLLRCKELEYG---------------GVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~---------------~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      ||+||||+||.......+               ....+.....++.++..||.+++.+|.
T Consensus       452 lsvcmAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel~~a~aaa~~l~~mI~y~k~Lf~  511 (674)
T KOG2200|consen  452 LSVCMAPSLFHLNALKLDSSPRVRQKKSETGKPDQKELNEALAAAQGLAHMIKYQKLLFT  511 (674)
T ss_pred             hhhhhcchHHhhccCCCCCCccccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999987542211               134466677789999999999999994

>KOG1450|consensus

Probab=99.98  E-value=1.4e-32  Score=254.60  Aligned_cols=190  Identities=28%  Similarity=0.425  Sum_probs=168.7

Q ss_pred             CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002          30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV  108 (240)
Q Consensus        30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v  108 (240)
                      .++-...+..+..+| ++.+|+.       .+|..|++.+||||++|+...|++||.++|.+...++.  +..+.|+|+|
T Consensus       459 s~Lealc~rE~~~vP~~V~~c~~-------~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~--~~~~~dihai  529 (650)
T KOG1450|consen  459 SPLEALCQRENGLVPKIVRLCIE-------HIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLA--DDRWDDIHAI  529 (650)
T ss_pred             ccHHHHhhccCCCcchHHHHHHH-------HHhhhcccCCceeeecchHHHHHHHHHhcCcccccccc--ccchhHHHHH
Confidence            344445566777788 8889997       69999999999999999999999999999976655543  3456899999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002         109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA  188 (240)
Q Consensus       109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa  188 (240)
                      +++||.||||||+||+|..++..|..+....+...+...+.+++..||++|+.||++|+.||++|.+|++.|||+.+|||
T Consensus       530 ~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~~lP~~n~~Tlr~lv~HL~rv~shs~kNrMs~~NLa  609 (650)
T KOG1450|consen  530 TGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIGLLPDANYQTLRYLVRHLRRVLSHSDKNRMSRHNLA  609 (650)
T ss_pred             HHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHhhCCCcchhHHHHHHHHHHHHHhccccccccccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      +||||+|+.+....   ......+..+.++|+.||+++..+|+
T Consensus       610 IVfgpTl~~~~~~~---~~~a~~~~~~~~ivq~lle~~~~~f~  649 (650)
T KOG1450|consen  610 IVFGPTLIKPEQET---SSEAIHSTYQSQIVQLLLENVSSAFG  649 (650)
T ss_pred             EEeccccccccccc---cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence            99999999977652   22334667789999999999999996

>KOG4269|consensus

Probab=99.97  E-value=7.8e-33  Score=259.25  Aligned_cols=176  Identities=26%  Similarity=0.412  Sum_probs=154.5

Q ss_pred             hccccccc-ccccccccccccccccc-CCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHH
Q psy3002          37 ELDNRGRR-LLGKCFWNSLSHFFMPE-ECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKM  114 (240)
Q Consensus        37 ~~~~~~~~-~~~~~~~~~l~~~~~~e-~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~  114 (240)
                      +....+.| ++-+|+.+       +| .+|+++|||||++|+.+.|+.|+++||.+-..++... +...|+|+|||+||+
T Consensus       913 ~~n~s~lP~VVyrCvEy-------le~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~-d~E~dVn~IaGlLKL  984 (1112)
T KOG4269|consen  913 KRNVSGLPYVVYRCVEY-------LESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSM-DSEMDVNAIAGLLKL  984 (1112)
T ss_pred             eecccCCchHHHHHHHH-------HHhccccchhceEEecccHHHHHHHHHHhccccCchhhhc-cccccHHHHHHHHHH
Confidence            34555777 67788863       55 7899999999999999999999999999854444332 223789999999999


Q ss_pred             HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccc
Q psy3002         115 YFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPN  194 (240)
Q Consensus       115 flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~  194 (240)
                      |||+||+|||+.++|..|.......++......+..+|.+||++|..++.+|+.||++|++++..|||+++|||+||+|+
T Consensus       985 YlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~slP~aNl~l~~~LlehL~RI~e~ekvNKMnlrNlciVFsPT 1064 (1112)
T KOG4269|consen  985 YLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLISSLPPANLALFLFLLEHLKRIAEKEKVNKMNLRNLCIVFSPT 1064 (1112)
T ss_pred             HHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHHHhhcccccccccceeeeeccc
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCCCCC
Q psy3002         195 LLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA  237 (240)
Q Consensus       195 l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~  237 (240)
                      |.+|.+                 +...+|.+|+.||.+..+..
T Consensus      1065 LniPse-----------------~~~~li~n~d~if~dv~~q~ 1090 (1112)
T KOG4269|consen 1065 LNIPSE-----------------IESKLILNYDHIFTDVMRQV 1090 (1112)
T ss_pred             ccCcHH-----------------hhhhhccchhhhhccchHHH
Confidence            999875                 45568888999998876543

>KOG1117|consensus

Probab=99.97  E-value=3.3e-32  Score=254.20  Aligned_cols=201  Identities=22%  Similarity=0.344  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHhhcccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcC
Q psy3002          11 LLTKYLERLSTIAGSLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDE   89 (240)
Q Consensus        11 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~   89 (240)
                      ++..|...   |.+.....|.-+..++++...+| ++.+|+.       ++..+|+..|||||.+|...++..|-+.|.+
T Consensus       698 dft~W~~A---Iekaa~~~gt~LqeqqLs~~dIPvIVd~CI~-------FVTqyGl~cegIYrknG~~~~~~~lLeslr~  767 (1186)
T KOG1117|consen  698 DFTVWHTA---IEKAAGTDGTALQEQQLSKNDIPVIVDSCIA-------FVTQYGLGCEGIYRKNGDPLHISRLLESLRK  767 (1186)
T ss_pred             hHHHHHHH---HHHHhcCCcchhhhhhccCCCCcEehHHHHH-------HHHHhCccceeeeccCCchHHHHHHHHHHhh
Confidence            45666654   44555677889999999999999 6889997       6889999999999999999999999999988


Q ss_pred             CCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q psy3002          90 DRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGH  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~  169 (240)
                      +........++  +.+.+|+++||+|||+|++||+|.++|..|++++...+++++++....+|..||..||.||+.|+.|
T Consensus       768 Dars~~lrege--h~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~~rY~~lI~~lp~VnRaTLkalIgH  845 (1186)
T KOG1117|consen  768 DARSVKLREGE--HQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERIKRYGALIRSLPGVNRATLKALIGH  845 (1186)
T ss_pred             ccceeeccCCc--chHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            87544333333  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002         170 LSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK  233 (240)
Q Consensus       170 L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~  233 (240)
                      |++|..++++|+|+++|||.||||+||......          .++..|++.||++|..+|+-+
T Consensus       846 Ly~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgqd----------ehevnVledLingYvvVF~v~  899 (1186)
T KOG1117|consen  846 LYRVQKCSEINQMNVHNLALVFAPSLFQTDGQD----------EHEVNVLEDLINGYVVVFEVD  899 (1186)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhheecCCCc----------hhhhhHHHHHhcCceEEEEec
Confidence            999999999999999999999999999976431          257889999999999999743

>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation

Probab=99.97  E-value=1.4e-32  Score=217.69  Aligned_cols=140  Identities=34%  Similarity=0.520  Sum_probs=126.3

Q ss_pred             cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002          59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ  138 (240)
Q Consensus        59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~  138 (240)
                      .++++|+.++||||++|+..+++++++.++.+.....   .....|+|+||++||.||++||+||+|.+.|+.|.++.+.
T Consensus        10 ~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~~~~~~~   86 (151)
T PF00620_consen   10 YLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNE---NLENYDVHDVASLLKRFLRELPEPLIPSELYDKFIAASKS   86 (151)
T ss_dssp             HHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCST---TGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHHHHHHTS
T ss_pred             HHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccc---cccccChhhccccceeeeeccccchhhhhHHHHHhhhhcc
Confidence            3567899999999999999999999999999987642   1223799999999999999999999999999999998888


Q ss_pred             CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002         139 SKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL  201 (240)
Q Consensus       139 ~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~  201 (240)
                      .+.+++.+.++.++..||+.|+.+|.+++.||++|+.+++.|+||+.|||+||||+|++++..
T Consensus        87 ~~~~~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~~~  149 (151)
T PF00620_consen   87 ADEEEQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPPSS  149 (151)
T ss_dssp             SSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGSTS
T ss_pred             chhhHHHHHHHHhhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCCcC
Confidence            899999999999999999999999999999999999999999999999999999999998763

Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....

>KOG3564|consensus

Probab=99.96  E-value=1.2e-29  Score=225.23  Aligned_cols=179  Identities=21%  Similarity=0.309  Sum_probs=163.2

Q ss_pred             ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002          42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP  120 (240)
Q Consensus        42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp  120 (240)
                      -+| ++..|+.       .||.+||++|||||++|....+++|++.|-++..+-....    .|+|++|++||.|||+|.
T Consensus       361 MIPalVVHCVn-------eIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~----~Dihvic~~lKdFLR~Lk  429 (604)
T KOG3564|consen  361 MIPALVVHCVN-------EIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGN----DDIHVICCCLKDFLRNLK  429 (604)
T ss_pred             cchHHHHHHHH-------HHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCC----cchhHHHHHHHHHHHhcc
Confidence            344 4566776       5999999999999999999999999999999987554444    799999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002         121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE  200 (240)
Q Consensus       121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~  200 (240)
                      +||||.....+|..++..+|+..-..++...+..||.+||.||.||+-|+.+||+ |+.|||+..|||.+|||+++..+.
T Consensus       430 ePLip~~~~rdf~eAa~~tD~dn~~~aly~aV~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v  508 (604)
T KOG3564|consen  430 EPLIPFRLRRDFMEAAEITDEDNSILALYQAVGELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV  508 (604)
T ss_pred             cccccchHHHHHHHHhcCCCchhHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence            9999999999999999999999999999999999999999999999999999998 899999999999999999999888


Q ss_pred             cccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         201 LEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       201 ~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      ++++....++++..+.++++.|++--...|..
T Consensus       509 p~pd~~~~l~dv~~q~rvmkaLlelp~~yWsq  540 (604)
T KOG3564|consen  509 PNPDQVTMLQDVKTQPRVMKALLELPLEYWSQ  540 (604)
T ss_pred             CCccHhHHHHhhhhhHHHHHHHHhCCHHHHHH
Confidence            88888889999999999999999877766653

>KOG2710|consensus

Probab=99.96  E-value=1.3e-29  Score=226.03  Aligned_cols=183  Identities=27%  Similarity=0.372  Sum_probs=155.4

Q ss_pred             ccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCC
Q psy3002          42 GRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELP  120 (240)
Q Consensus        42 ~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp  120 (240)
                      .+| ++.+|..       .+...|+.+.||||++|+..++++|++.||.+.+......++..+++|+||++||+|||+||
T Consensus        93 ~IP~vv~~c~~-------~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp  165 (412)
T KOG2710|consen   93 QIPRVVAKCGQ-------YLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLP  165 (412)
T ss_pred             eCcHHHHHHHH-------HHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCC
Confidence            455 5677775       35677999999999999999999999999999543333333445899999999999999999


Q ss_pred             CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCC-----------CCChhhHHH
Q psy3002         121 NPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKT-----------GMTARNVAI  189 (240)
Q Consensus       121 ~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~N-----------kM~~~nLa~  189 (240)
                      +||+|.++|+.|+..+....+.+++..++.++..||..|+++|.+++.||+.++.|++.|           +|++.|||+
T Consensus       166 ~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~llp~~nr~~l~~ll~fL~~~a~~s~d~~~kdg~~~~gnkm~~~nlat  245 (412)
T KOG2710|consen  166 DPLLPLELYESFINPAKLEPETEQLGVLQLLIYLLPKCNRDTLEVLLGFLSVVASHAEDNIGKDGQEVNGNKMTSENLAT  245 (412)
T ss_pred             cccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHHhcCccchhHHHHHHhhhhhhhcccccccccccccccCcccchhhhhh
Confidence            999999999999999998888899999999999999999999999999999999999999           999999999


Q ss_pred             hhccccccCCc-----cccchhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         190 VWAPNLLRCKE-----LEYGGVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       190 vfaP~l~~~~~-----~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      ||+|+++....     .+............+..++..+++|++.+|.
T Consensus       246 If~P~iL~k~~~~~~~~s~~~~~~~s~~~~i~~~~~~~~~N~e~~f~  292 (412)
T KOG2710|consen  246 IFGPNILYKLKGSHKELSVTGVANESESEAIVNFAQMMIENLEALFQ  292 (412)
T ss_pred             hhcchhhhcccCCCcccccccccchhhHHHHHHHHHHhhhhHHHhhc
Confidence            99999999421     1111222234445678899999999999998

>KOG4406|consensus

Probab=99.96  E-value=1.4e-29  Score=222.19  Aligned_cols=167  Identities=26%  Similarity=0.433  Sum_probs=150.6

Q ss_pred             ccCCC-CCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhc
Q psy3002          60 PEECP-LGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQ  138 (240)
Q Consensus        60 ~e~~g-l~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~  138 (240)
                      .+..| +++||+||.||+.+.+.++.+.+++|..+++...    .|+|..|.++|.|||+||+||++.++|+.+..... 
T Consensus       282 L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~----~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~-  356 (467)
T KOG4406|consen  282 LQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVY----KDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSN-  356 (467)
T ss_pred             hhccceecccceeccccCccchHHHHHHhcCCCcccHHHh----ccchhhHHHHHHHHhcCCcccchhhhhhhhhcccc-
Confidence            45667 9999999999999999999999999999988644    66999999999999999999999999998876554 


Q ss_pred             CCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHH
Q psy3002         139 SKLQDQLTQMRETVEK-LPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAV  217 (240)
Q Consensus       139 ~~~~~~~~~l~~~l~~-Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~  217 (240)
                      .+..++..+.+++++. ||+.|+.++++++.||.+|++|+..|+||+.|||+||||+|+++...    ...+.++...+.
T Consensus       357 ~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~----s~tl~q~npin~  432 (467)
T KOG4406|consen  357 VDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDE----SLTLKQINPINK  432 (467)
T ss_pred             chHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccc----cccHHHhccHHH
Confidence            4567889999999988 99999999999999999999999999999999999999999999874    345667788899


Q ss_pred             HHHHHHhcchhcCCCCCC
Q psy3002         218 VTEFLVVYYAAIFDKKNP  235 (240)
Q Consensus       218 vv~~LI~~~~~iF~~~~~  235 (240)
                      +.+++|+||+.+|.....
T Consensus       433 F~~~li~~~~~~f~~~~~  450 (467)
T KOG4406|consen  433 FTKFLIEHYKKLFTTPEN  450 (467)
T ss_pred             HHHHHHHhhhhccCCCCC
Confidence            999999999999986553

>KOG1453|consensus

Probab=99.93  E-value=8.3e-27  Score=229.38  Aligned_cols=190  Identities=29%  Similarity=0.429  Sum_probs=153.2

Q ss_pred             ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002          38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF  116 (240)
Q Consensus        38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl  116 (240)
                      ....+.| ++.+|+.       .++.+|+..|||||++|...+++.|...|+.+........    .|+|++++++|.||
T Consensus       613 ~e~~~vP~i~~~c~~-------~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~----~dih~vtsVlK~yL  681 (918)
T KOG1453|consen  613 YEPSTVPFILKKCLR-------EIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLST----PDIHAVTSVLKLYL  681 (918)
T ss_pred             cCCCCCCHHHHHHHH-------HHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCC----CChHHHHHHHHHHH
Confidence            3566888 5677875       5889999999999999999999999999999874444444    79999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHh
Q psy3002         117 RELPNPLCTYQLYHSFVGAVQQSKLQ------DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIV  190 (240)
Q Consensus       117 r~Lp~pLi~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~v  190 (240)
                      |+||+||+++..|+.|+.+.+.....      +++..+..++..||+.|+.+|++|+.||.+|+.+++.|+|+..|||+|
T Consensus       682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlaiv  761 (918)
T KOG1453|consen  682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAIV  761 (918)
T ss_pred             HhccccccccchHHHHHhhhccccccccccccccchhHHHHHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCcccc
Confidence            99999999999999999998873333      488999999999999999999999999999999999999999999999


Q ss_pred             hccccccCCccccch-hhhhhhhhhHHHHHHHHHhcchhcCCCCCCCCC
Q psy3002         191 WAPNLLRCKELEYGG-VAALQGVGVQAVVTEFLVVYYAAIFDKKNPRAS  238 (240)
Q Consensus       191 faP~l~~~~~~~~~~-~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~~~  238 (240)
                      |||+++|+++..... .........+..+.++.+..+..+|.++++...
T Consensus       762 F~Ptllr~~d~~~~~~~~~~~~y~~~~~l~~~~~~~~~~~~~e~p~~~~  810 (918)
T KOG1453|consen  762 FAPTLLRPPDGTRDLTDMKDKNYPLAAQLPEYKITLHNLSFLEEPPKIL  810 (918)
T ss_pred             ccCcccCCCCCcchhhhhccchhhHHHhcchHHHHHhhcccccCCcccc
Confidence            999999999854211 111122223444444555555666666655543

>KOG1452|consensus

Probab=99.82  E-value=1.1e-20  Score=161.16  Aligned_cols=178  Identities=17%  Similarity=0.170  Sum_probs=141.5

Q ss_pred             cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002          39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR  117 (240)
Q Consensus        39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr  117 (240)
                      ..+..| ++.+|+.       .+|++|++..|+||+.|+..+-+-||+.|+.+....... .+...|.++++|++|.|+|
T Consensus       196 E~~~~PIvlrR~~~-------EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~-~E~iPD~nvItg~~kD~lr  267 (442)
T KOG1452|consen  196 EPESPPIVLRRLYA-------EIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELG-AESIPDYNVITGDSKDELR  267 (442)
T ss_pred             CCCCCchHHHHHHH-------HHHhcccccccceeeechhhHHHHHHHHhccCCcccccc-cccCCCcceeecccHhHHH
Confidence            344455 4566775       589999999999999999999999999999876443332 2455899999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccc
Q psy3002         118 ELPNPLCTYQLYHSFVGAVQ---QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPN  194 (240)
Q Consensus       118 ~Lp~pLi~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~  194 (240)
                      ||||||++...++...+++.   -.|.+.....+-.+|..|+..++.+|..++.||..|..+|+.|+|++..||++|||-
T Consensus       268 ElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls~i~~P~  347 (442)
T KOG1452|consen  268 ELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAIIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLSLIFAPL  347 (442)
T ss_pred             hCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHHHHhhhh
Confidence            99999999999998888765   355677778888999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002         195 LLRCKELEYGGVAALQGVGVQAVVTEFLVVYY  226 (240)
Q Consensus       195 l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~  226 (240)
                      ||-+.+.-  ...+.........|.+++|+.+
T Consensus       348 L~~~~~t~--sP~t~~~~sk~~AV~~~~i~~~  377 (442)
T KOG1452|consen  348 LFFCLDTF--SPYTISPTSKMAAVRTLDINQA  377 (442)
T ss_pred             HHHhhccc--CCCccCCcchhHHHHHhhhhcc
Confidence            98876421  1111122233345555555554

>KOG4271|consensus

Probab=99.81  E-value=1.1e-20  Score=178.83  Aligned_cols=155  Identities=27%  Similarity=0.349  Sum_probs=140.3

Q ss_pred             cchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHH
Q psy3002          32 VLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVAS  110 (240)
Q Consensus        32 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~  110 (240)
                      .+.......+.+| ++++|+.       ++|..|+.+||+||++|+.++.+.++++|.++...++...+   ..+|+||+
T Consensus       921 ~l~~~~t~~k~ip~~~ekc~s-------fiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d---~~v~~vag  990 (1100)
T KOG4271|consen  921 PLQDAVTSEKPIPIFLEKCKS-------FIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMD---TTVNVVAG  990 (1100)
T ss_pred             cccccccCCcccchHHHHHHH-------HHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccc---cccccccC
Confidence            3334445666777 6889997       78999999999999999999999999999997766665542   57999999


Q ss_pred             HHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHh
Q psy3002         111 LLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIV  190 (240)
Q Consensus       111 lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~v  190 (240)
                      .+|.||.+||+||+|+++...+.++....|..+++..++..+..+|+.|+.+++|++.||.+|+....+|.||..||++|
T Consensus       991 Alksffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~ 1070 (1100)
T KOG4271|consen  991 ALKSFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSIC 1070 (1100)
T ss_pred             cchhhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhhhcCchHHHHHHHHHHHHhhhccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q psy3002         191 WAPNLL  196 (240)
Q Consensus       191 faP~l~  196 (240)
                      |++.|+
T Consensus      1071 ~~~~~~ 1076 (1100)
T KOG4271|consen 1071 FPTLLM 1076 (1100)
T ss_pred             ccchHH
Confidence            998877

>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins

Probab=99.78  E-value=4e-18  Score=141.43  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=125.7

Q ss_pred             CcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc--------CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-
Q psy3002          67 DQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ--------DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-  137 (240)
Q Consensus        67 ~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~--------d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~-  137 (240)
                      .-|+||.++....+...++-++...+....+.....+        --.+||+++++||++|||||+|..+|+.|..++. 
T Consensus        59 vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~l  138 (235)
T cd04405          59 VVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHDMLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILEL  138 (235)
T ss_pred             hhcccccccCcHHHHHHHHHHHhCCcccccccccccccccccccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHH
Confidence            3689999999999999999888775432111111111        1238999999999999999999999999988887 


Q ss_pred             --cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC-------CCCCCChhhHHHhhccccccCCccccchhhh
Q psy3002         138 --QSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHG-------DKTGMTARNVAIVWAPNLLRCKELEYGGVAA  208 (240)
Q Consensus       138 --~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s-------~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~  208 (240)
                        ....+..+++++.++..||++||..|+.|+.||.+++.++       ..|+|   |++..|+|+++++++-+      
T Consensus       139 l~~~~~e~aleAlQl~~lLLP~enRe~Lq~LL~fl~~va~~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l~------  209 (235)
T cd04405         139 LGNGKEEVALEALQLCLLLLPPASRRELRRLLRFMARAAKNDMPRLHKEIENRM---LVKQTFSRAILCSKDLD------  209 (235)
T ss_pred             hcCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCccccccccchHH---HHHHHhhhHhcCccccC------
Confidence              4457899999999999999999999999999999999994       25666   99999999999998532      


Q ss_pred             hhhhhhHHHHHHHHHhcchhcCC
Q psy3002         209 LQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       209 ~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                         ......+|.|||+|+.+||.
T Consensus       210 ---~~~~~~LV~Fmmd~~~~ifk  229 (235)
T cd04405         210 ---EGLADLLVLFLMDHHQDIFK  229 (235)
T ss_pred             ---HHHHHHHHHHHHHcchhhhc
Confidence               13367899999999999996

This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4724|consensus

Probab=99.77  E-value=1.1e-19  Score=167.28  Aligned_cols=171  Identities=14%  Similarity=0.074  Sum_probs=150.4

Q ss_pred             ccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcC
Q psy3002          60 PEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQS  139 (240)
Q Consensus        60 ~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~  139 (240)
                      ....|--++||||..++...+++|++.++.|.++.+..     ..+|+.|.++|.|+|..|.-+++..+|+.|.......
T Consensus       107 lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~-----~~i~v~a~v~kdflr~ip~~~lSsdl~~hw~~~~~~~  181 (741)
T KOG4724|consen  107 LCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKS-----GEIVVDAAVDKDFLRTIPQLTLSSDLNSHWQLQGPEN  181 (741)
T ss_pred             HhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccc-----cceEEeehhhhchhhhchhhhhccccHHHHhhccccc
Confidence            45568899999999999999999999999999888765     4899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHH
Q psy3002         140 KLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVT  219 (240)
Q Consensus       140 ~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv  219 (240)
                      +.++++..++++...||..|..+|++|...| .|..++++|.|+..|||+|++|+.+++...... ...-.-.+..--.+
T Consensus       182 ~~e~~i~~i~r~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~p~~l~~~~~~s~-e~~k~ln~kv~~l~  259 (741)
T KOG4724|consen  182 VYEAIISEIERQGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVNPIKLKVLTRTSS-EFGKGLNGKVPPLP  259 (741)
T ss_pred             cHHHHHHHHHHHHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhcchhcccccccCh-hhhccccCCCCCce
Confidence            9999999999999999999999999999999 999999999999999999999999998764321 11112223345578


Q ss_pred             HHHHhcchhcCCCCCCCC
Q psy3002         220 EFLVVYYAAIFDKKNPRA  237 (240)
Q Consensus       220 ~~LI~~~~~iF~~~~~~~  237 (240)
                      +|+|+|+-.||+++.+.+
T Consensus       260 ~flI~nclrifGe~i~~~  277 (741)
T KOG4724|consen  260 IFLIVNCLRIFGEDIEGI  277 (741)
T ss_pred             eeehhhhHHhhcccccce
Confidence            999999999999987653

>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins

Probab=99.74  E-value=2.6e-17  Score=135.06  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=116.9

Q ss_pred             ccCCCCCCcce---eeecCCcHHHHHH-HHHhcCCCCCCCCC----CCccccCHHHHHHHHHHHHhhCCCCCCCh-hhHH
Q psy3002          60 PEECPLGDQEV---SLISCPSLPLCIT-RHTFDEDRIPDLYT----DDTIVQDIHSVASLLKMYFRELPNPLCTY-QLYH  130 (240)
Q Consensus        60 ~e~~gl~~eGI---fR~~g~~~~i~~L-~~~~d~~~~~~~~~----~~~~~~d~~~va~lLK~flr~Lp~pLi~~-~~~~  130 (240)
                      ++.+|+++++|   ||.+++...++.+ +..|+.+.......    .+....|||+++++||.++|.||.++++. +.|.
T Consensus        17 Lk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~~v~~~~~Y~   96 (198)
T cd04401          17 LKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGSKVIWWEVYE   96 (198)
T ss_pred             HHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCCccCCHHHHH
Confidence            56789999999   9999999999887 77888664221111    01234899999999999999999999999 9999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002         131 SFVGAVQQSKLQDQLTQMRETVEKL--PPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL  201 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~~~l~~L--p~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~  201 (240)
                      .|...-+..+-.  ..+++.++..+  |+.|..++..++.+|.+|+.|+..|+|+..+|+.+|||.+|..++.
T Consensus        97 ~F~~~E~~~~~p--~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~~  167 (198)
T cd04401          97 EFKARERRSNYP--ADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPTG  167 (198)
T ss_pred             HHHHHHHhcCCc--HHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCCc
Confidence            999865432222  33888888887  8899999999999999999999999999999999999999999874

Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.

>KOG4370|consensus

Probab=99.31  E-value=2.2e-12  Score=114.16  Aligned_cols=157  Identities=18%  Similarity=0.148  Sum_probs=123.1

Q ss_pred             cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCC-----------------C----------------CC---Cccc
Q psy3002          59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDL-----------------Y----------------TD---DTIV  102 (240)
Q Consensus        59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~-----------------~----------------~~---~~~~  102 (240)
                      +.+++|+-+||++|.+...++.+++++.-..+.....                 .                ..   ....
T Consensus        81 ~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~  160 (514)
T KOG4370|consen   81 FVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQ  160 (514)
T ss_pred             hhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHHHhhccccchhh
Confidence            4778899999999998887665554432222110000                 0                00   1123


Q ss_pred             cCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCC
Q psy3002         103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGM  182 (240)
Q Consensus       103 ~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM  182 (240)
                      ..|.+||++||.|+|+||+||++.++...|..++.........+.++.++..||..||.++.++.-|+-.|.+..-.|||
T Consensus       161 l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk~Lp~cNyll~swl~lH~d~vi~~e~~~Kl  240 (514)
T KOG4370|consen  161 LTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLKILPKCNYLLYSWLNLHKDKVIEEEYCLKL  240 (514)
T ss_pred             cCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999999999998777788889999999999999999999999999999998889999


Q ss_pred             ChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         183 TARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       183 ~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      +..||+++.+|+.=-                 ...++..|..|...||.+
T Consensus       241 n~q~i~i~lspt~q~-----------------s~r~l~al~~h~q~lf~~  273 (514)
T KOG4370|consen  241 NKQQIFINLSPTEQE-----------------SKRGLQALGLHLQTLFEM  273 (514)
T ss_pred             chhheeeecchHHHH-----------------HHHHHHHHHHHHHHHHhh
Confidence            999999998876532                 244566677777777764

>KOG3565|consensus

Probab=99.27  E-value=1.9e-12  Score=122.94  Aligned_cols=139  Identities=21%  Similarity=0.250  Sum_probs=123.0

Q ss_pred             cccCCCCCCcceee-ecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCC-CCChhhHHHHHHHH
Q psy3002          59 MPEECPLGDQEVSL-ISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNP-LCTYQLYHSFVGAV  136 (240)
Q Consensus        59 ~~e~~gl~~eGIfR-~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~p-Li~~~~~~~~~~~~  136 (240)
                      +.+.+|+..+|||| ++|....+...+.++.++........   ..+... |+++|.|+|.+.+| .|+.+.+..+..+.
T Consensus       228 l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~---~~~~dS-a~vlk~~~~~le~P~~f~~e~~~~~~~~~  303 (640)
T KOG3565|consen  228 LEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLN---DPDLDS-AGVLKLYFRGLEEPADFPFEDFGQPHDCA  303 (640)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcc---CcchhH-HHHHHHHHccCCCcccCccccccchhhhh
Confidence            57889999999999 89999999999999999843322222   145555 99999999999999 99999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCcc
Q psy3002         137 QQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL  201 (240)
Q Consensus       137 ~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~  201 (240)
                      ...+.-++...++.++..+|..+..++.++..|+...+..+..|.|+..|+|+||||++...++.
T Consensus       304 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~e~  368 (640)
T KOG3565|consen  304 ARDNLLSRALHVRKLLKSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVPEG  368 (640)
T ss_pred             hhcCchhhhhhhhhhhhccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCccc
Confidence            87777777788999999999999999999999999999999999999999999999999877653

>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation []

Probab=98.36  E-value=4.5e-06  Score=76.16  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=105.7

Q ss_pred             ccCCCCCCcceee---ecCCcHHHHH-HHHHhcCCCCCCCCC-----CCccccCHHHHHHHHHHHHhhCCCCCCChhhHH
Q psy3002          60 PEECPLGDQEVSL---ISCPSLPLCI-TRHTFDEDRIPDLYT-----DDTIVQDIHSVASLLKMYFRELPNPLCTYQLYH  130 (240)
Q Consensus        60 ~e~~gl~~eGIfR---~~g~~~~i~~-L~~~~d~~~~~~~~~-----~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~  130 (240)
                      +..+|+++++||-   -.-+...++. |+..|+.+.......     .+....++|+++++||-.+..||..+++++.|.
T Consensus        19 lK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp~gvVgW~~Y~   98 (420)
T PF08101_consen   19 LKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLPGGVVGWDSYE   98 (420)
T ss_pred             HHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcCCCccccHHHH
Confidence            5578999999974   4445556655 455666655431111     112348999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc
Q psy3002         131 SFVGAVQQSKLQDQLTQMRETV-EKLP-PPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE  202 (240)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~~~l-~~Lp-~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~  202 (240)
                      .|...-+..+-  ...++..++ ..|| +.+..++..++.+|..|+.|+..|+|+..-|+-.+|+-.|......
T Consensus        99 ~Fk~~E~~~~y--p~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~~~~  170 (420)
T PF08101_consen   99 EFKRREREAGY--PRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHPDFG  170 (420)
T ss_pred             HHHHHHhhcCC--ChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCCCcc
Confidence            99876543222  234555555 5564 5667899999999999999999999999999999999999887643

>KOG4724|consensus

Probab=97.69  E-value=2.5e-05  Score=73.47  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=107.2

Q ss_pred             ccCCCCCCcceeeecCCcHHH-----HHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHH
Q psy3002          60 PEECPLGDQEVSLISCPSLPL-----CITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVG  134 (240)
Q Consensus        60 ~e~~gl~~eGIfR~~g~~~~i-----~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~  134 (240)
                      ++..+..++++||..-...-+     ...-+.-+.+..++...     ..+|.+++++|.|+|++|-.++..+.+.++.+
T Consensus       442 l~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~s-----spv~taasv~KdfnRKtpRgi~sr~ihke~~e  516 (741)
T KOG4724|consen  442 LKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPS-----SPVHTAASVHKDFNRKTPRGIPSREIHKESME  516 (741)
T ss_pred             HHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCC-----CCchHHHHHHHHhhhhcCCCccchHHHHHhhh
Confidence            556788999999984332222     22223333344444432     58999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHH--------HHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCc
Q psy3002         135 AVQQSKLQDQLTQMRE--------TVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE  200 (240)
Q Consensus       135 ~~~~~~~~~~~~~l~~--------~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~  200 (240)
                      +....+++++.++++.        .....|..+.........-...+..+++.+.||..|++.|..|+......
T Consensus       517 a~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~~s~dsSn~~~csrpn~~tvd~  590 (741)
T KOG4724|consen  517 ATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEETSNDSSNPGFCSRPNALTVDD  590 (741)
T ss_pred             hhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccccccccccccCCCCCccccchhh
Confidence            9888888889999998        77888988887777777777778899999999999999999988887654

>KOG1453|consensus

Probab=97.44  E-value=0.00011  Score=73.65  Aligned_cols=142  Identities=20%  Similarity=0.240  Sum_probs=112.0

Q ss_pred             cccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCcc-ccCHHHHHHHHHHHHhhC--CCCCCChhhHHHHH-
Q psy3002          59 MPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTI-VQDIHSVASLLKMYFREL--PNPLCTYQLYHSFV-  133 (240)
Q Consensus        59 ~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~-~~d~~~va~lLK~flr~L--p~pLi~~~~~~~~~-  133 (240)
                      .....|....|+||.+|....++..+..+|.... ..-...... ..++...+|.++.++|.+  |.+....+.|..+. 
T Consensus       491 e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~sg~~~~~~r~~~~P~~c~~c~~~~~~~~  570 (918)
T KOG1453|consen  491 ESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNLHSGALKHYLRSLRKPAPCRTCETYSWFME  570 (918)
T ss_pred             ccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchhccCcchhhhhcccCCcccccccccchhhh
Confidence            3556789999999999999999999999997763 111111111 345667777999999999  99988888888887 


Q ss_pred             ---------------HHHhcCCHHHHH-------HHHHHHHh----cCCccHHHHHHHHHHHHHHhhcCCCCC-CCCh-h
Q psy3002         134 ---------------GAVQQSKLQDQL-------TQMRETVE----KLPPPHYRTLEYLIGHLSRVAAHGDKT-GMTA-R  185 (240)
Q Consensus       134 ---------------~~~~~~~~~~~~-------~~l~~~l~----~Lp~~n~~~L~~l~~~L~~V~~~s~~N-kM~~-~  185 (240)
                                     .........+++       ..+..+..    .+|.....++.++..|+.++.....+| -|+. .
T Consensus       571 ~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e  650 (918)
T KOG1453|consen  571 LECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVE  650 (918)
T ss_pred             cccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHH
Confidence                           333334445556       78888888    999999999999999999999988888 7887 8


Q ss_pred             hHHHhhcc----ccccCCc
Q psy3002         186 NVAIVWAP----NLLRCKE  200 (240)
Q Consensus       186 nLa~vfaP----~l~~~~~  200 (240)
                      ||+.+|++    +.+...+
T Consensus       651 ~l~~~~e~~~~~v~l~~~d  669 (918)
T KOG1453|consen  651 NLSAVFENGDALVLLSTPD  669 (918)
T ss_pred             HHHHHhcCCccceecCCCC
Confidence            99999999    5665554

>KOG1449|consensus

Probab=97.23  E-value=3.5e-05  Score=71.49  Aligned_cols=192  Identities=28%  Similarity=0.406  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHhhcccccCCCcchhhh-ccccccc--cccccccccccccccccCCC-CCCcceeeecCCcHHHHHHHHHh
Q psy3002          12 LTKYLERLSTIAGSLINCGPVLSWME-LDNRGRR--LLGKCFWNSLSHFFMPEECP-LGDQEVSLISCPSLPLCITRHTF   87 (240)
Q Consensus        12 ~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~~~~e~~g-l~~eGIfR~~g~~~~i~~L~~~~   87 (240)
                      .-+|++.|+....+-..+|+.+..+. ...++.|  .+|+|+. +.++  +...++ .+..|.|++.            +
T Consensus       193 ~akymeTL~sl~~~~~~~gl~ltr~~~~~G~~lpas~~g~~C~-s~~~--~~q~~ei~~~~g~l~a~------------~  257 (670)
T KOG1449|consen  193 LAKYMETLSSLVDSNLNCGLVLTRMEVGLGRGLPASEWGRGCV-SHHA--VTQHREILDGNGVLSAV------------E  257 (670)
T ss_pred             HHHHHHHHhcccccCccccceecceeeccccccchhhhccchh-cccc--chhccCCcccCcceecc------------c
Confidence            67899999999999999999998777 4666777  4788773 2222  112222 3444666654            4


Q ss_pred             cCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q psy3002          88 DEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVEKLPPPHYRTLEYL  166 (240)
Q Consensus        88 d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l  166 (240)
                      |.+..++...+ .-..|+.++..+++.|.+.+|.|+..        ..+. .....+.+...+-.....++.|+.+-..|
T Consensus       258 D~gae~d~~af-~~p~di~v~S~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~~~~se~~~r~a~~l  328 (670)
T KOG1449|consen  258 DEGAEVDGEAF-RWPSDIVVESWDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSLETMSEAHYRTAKFL  328 (670)
T ss_pred             ccccccccccc-CCccceeeeccccChhhhhcCCCCcc--------cccccccCcccceeeeccccccCCcccchHhhhh
Confidence            45544443322 11368888999999999999999544        1222 22234555666667788999999999999


Q ss_pred             HHHHHHhhcCCCCCCCChhhHHHhhccccccCCccc-cchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE-YGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       167 ~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~-~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      ..||.+...-.       .+++|++.|+++|++..- ......+...+.+..+..+.|++....|.++.
T Consensus       329 se~ft~~~~~~-------~s~~I~~~~~~~r~pptL~~~~~h~~~~~~~~~~~~~~~~e~s~~~~~~~i  390 (670)
T KOG1449|consen  329 SEHFTRLCKSK-------KSLAIVWSPNLFRPPPTLNGADTHLLSGLNVHTAICDFFIENSESLFVNDI  390 (670)
T ss_pred             chhhhhhcccc-------ccceeecCCCCCCCCCCCCchhhhhcccCCcceeecccchhhhhhhhhccc
Confidence            99999888732       899999999999998621 11222234455667777889999999998765

>KOG1449|consensus

Probab=96.88  E-value=0.00026  Score=65.85  Aligned_cols=69  Identities=45%  Similarity=0.582  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccc------hhhhhhhhhhHHHHHHHHHhcchhcCCCCCC
Q psy3002         167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG------GVAALQGVGVQAVVTEFLVVYYAAIFDKKNP  235 (240)
Q Consensus       167 ~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~  235 (240)
                      ++||..|+.++.+..|-+.|||.+|||+|+|.+..+..      ....+..++.+..|+++...|.|.+|....+
T Consensus         1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~~~GdaAf~avq~qsvV~EfilnhvDvlF~~~a~   75 (670)
T KOG1449|consen    1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSHLWGDAAFSAVQAQSVVSEFILNHVDVLFLPTAG   75 (670)
T ss_pred             CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhccccccHHHHHHHhhhhhhhhcccccceecCCcCC
Confidence            36899999999999999999999999999998764321      3456677888899999999999999997553

>KOG4271|consensus

Probab=96.20  E-value=0.0066  Score=59.62  Aligned_cols=175  Identities=12%  Similarity=0.075  Sum_probs=116.6

Q ss_pred             cccccCCCCCCcc---eeeecC-CcHHHHHHHHHhcCCCCCCCCCCCccccCHH--HHHHHHH--HHHhhCCCCCCChhh
Q psy3002          57 FFMPEECPLGDQE---VSLISC-PSLPLCITRHTFDEDRIPDLYTDDTIVQDIH--SVASLLK--MYFRELPNPLCTYQL  128 (240)
Q Consensus        57 ~~~~e~~gl~~eG---IfR~~g-~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~--~va~lLK--~flr~Lp~pLi~~~~  128 (240)
                      +.+++..|+..||   |-|.+. +...|+--...|+.++...+.-.+  ..+||  .|...++  .-||.++..+.|...
T Consensus       379 L~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~--~~~ph~s~v~e~Ie~~~~lr~~~~~~~~~~~  456 (1100)
T KOG4271|consen  379 LVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNS--FQQPHLSYVGESIEKSHSLRQQGQQIAPKLQ  456 (1100)
T ss_pred             hhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhh--hcCcchhHHHhhhhhhhhhhhcccccCCccc
Confidence            5568899999999   888888 555565544445422222221111  14788  5777777  778888888888877


Q ss_pred             HHHHHHH--HhcCCHHHHHHHHHHHH-hc--CCccHHH----HHHHHHHHHHHhhcCCCCCCCChh-hHHHhhccc-ccc
Q psy3002         129 YHSFVGA--VQQSKLQDQLTQMRETV-EK--LPPPHYR----TLEYLIGHLSRVAAHGDKTGMTAR-NVAIVWAPN-LLR  197 (240)
Q Consensus       129 ~~~~~~~--~~~~~~~~~~~~l~~~l-~~--Lp~~n~~----~L~~l~~~L~~V~~~s~~NkM~~~-nLa~vfaP~-l~~  197 (240)
                      ...+..+  +...-.++|+.++...+ ..  .|.+|+.    ++.+|+..+..++.++..|.|+.. .-+.|.+|. +++
T Consensus       457 C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s~aCkS~~llL~  536 (1100)
T KOG4271|consen  457 CVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLASAACKSPHLLLR  536 (1100)
T ss_pred             cccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHHHHhcChHHHHh
Confidence            7776666  44444466777777555 44  5888887    888888888999999999999999 899999994 666


Q ss_pred             CCcc-------c--c--chhhhhh----------hhh-hHHHHHHHHHhcchhcCCCC
Q psy3002         198 CKEL-------E--Y--GGVAALQ----------GVG-VQAVVTEFLVVYYAAIFDKK  233 (240)
Q Consensus       198 ~~~~-------~--~--~~~~~~~----------~~~-~~~~vv~~LI~~~~~iF~~~  233 (240)
                      .+-.       .  .  ..+..+.          ... .++.+|..+++.|..||.+.
T Consensus       537 ~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~  594 (1100)
T KOG4271|consen  537 LPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDN  594 (1100)
T ss_pred             cccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhccc
Confidence            3211       0  0  0011111          111 35678889999999999764

>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins

Probab=96.20  E-value=0.0049  Score=45.47  Aligned_cols=36  Identities=56%  Similarity=1.128  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccCCCcchhhhc
Q psy3002           3 DQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL   38 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~   38 (240)
                      +|++-.++++..|++++|.++.+.++|||++..+++
T Consensus        79 ~~~~~~~~~l~~YL~RlS~Ia~~~inCGPvLtWlei  114 (114)
T cd07278          79 REQQNLHQVLSDYLKRLSSIAGNLLNCGPVLNWLEL  114 (114)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCcccchhcceeeeC
Confidence            467778899999999999999999999999998764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d

>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein

Probab=96.19  E-value=0.0051  Score=45.21  Aligned_cols=36  Identities=50%  Similarity=0.981  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccCCCcchhhhc
Q psy3002           3 DQQIYMKRLLTKYLERLSTIAGSLINCGPVLSWMEL   38 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~   38 (240)
                      ++++-.+.++..|+++++.++.+.++|||++..+++
T Consensus        78 ~~~~~~~~~l~~YL~RlS~Ia~~~inCGPVLtWmeI  113 (113)
T cd07299          78 DRLQILTPLLSEYLNRLTGIVDSNLNCGPVLTWMEI  113 (113)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCCccccccceeeeC
Confidence            566778899999999999999999999999988764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3iug_A	229	Crystal Structure Of The Rhogap Domain Of Rics Leng		1e-34
3byi_A	214	Crystal Structure Of Human Rho Gtpase Activating Pr		1e-19
2osa_A	202	The Rho-Gap Domain Of Human N-Chimaerin Length = 20		7e-18
3cxl_A	463	Crystal Structure Of Human Chimerin 1 (Chn1) Length		2e-17
1xa6_A	466	Crystal Structure Of The Human Beta2-Chimaerin Leng		7e-16
1f7c_A	231	Crystal Structure Of The Bh Domain From Graf, The G		8e-13
1grn_B	203	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX		9e-13
2ngr_B	234	Transition State Complex For Gtp Hydrolysis By Cdc4		1e-12
1ow3_A	242	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-12
1am4_A	199	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-12
1tx4_A	198	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198		2e-12
3fk2_A	246	Crystal Structure Of The Rhogap Domain Of Human Glu		6e-12
2ee4_A	209	Solution Structure Of The Rhogap Domain From Human		1e-11
2ee5_A	219	Solution Structure Of The N-Teruminus Extended Rhog		1e-11
2ovj_A	201	The Crystal Structure Of The Human Rac Gtpase Activ		1e-10
3msx_B	201	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-08
3kuq_A	228	Crystal Structure Of The Dlc1 Rhogap Domain Length		2e-08
1pbw_A	216	Structure Of Bcr-Homology (Bh) Domain Length = 216		4e-06
3eap_A	271	Crystal Structure Of The Rhogap Domain Of Arhgap11a		9e-06
2qv2_A	342	A Role Of The Lowe Syndrome Protein Ocrl In Early S		1e-04
3qis_A	366	Recognition Of The F&h Motif By The Lowe Syndrome P		1e-04

>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 71  RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 129
Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E
Sbjct: 130 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIE 188

>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 70/119 (58%)
Query: 81  CITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSK 140
            I +  F  ++   L  DD+  +DIH V   LKM+FRELP PL  Y  +  FV A+++  
Sbjct: 65  TIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQD 124
Query: 141 LQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK 199
              ++  ++  V+KLPPP+  T++ L GHL+++ A   K  M+ +++ IV+ P LLR +
Sbjct: 125 NNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAE 183

>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
           +DI+ +   LK+YFR+LP PL TY  Y  F+ + +     +QL  + E ++ LPP H  T
Sbjct: 77  EDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCET 136
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           L YL+ HL RV  H  +  M A N+ IV+ P L+R  EL+
Sbjct: 137 LRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 176

>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 100 TIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPH 159
            + +DI+ +   LK+YFR+LP PL TY  Y  F+ + +     +QL  + E ++ LPP H
Sbjct: 335 NMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAH 394
Query: 160 YRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
             TL YL+ HL RV  H  +  M A N+ IV+ P L+R  EL+
Sbjct: 395 CETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 437

>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           DI+ +   LK+YFR+LP P+ TY  Y  F+ A + S   ++L  + E +  LPP HY TL
Sbjct: 342 DINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETL 401
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            YL+ HL +V  +     M A N+ IV+ P L+R
Sbjct: 402 RYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMR 435

>pdb|1F7C|A Chain A, Crystal Structure Of The Bh Domain From Graf, The Gtpase Regulator Associated With Focal Adhesion Kinase Length = 231

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 56/97 (57%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           +I ++ S LK Y R LP PL  YQ   SF+ A +    + +++++   V +LP  + + L
Sbjct: 93  EIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQML 152
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
             L+ HL++VA +  +  MT  N+ +V+ P LLR +E
Sbjct: 153 HLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE 189

>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           ++H  A +LK + RELP PL T+ LY   VG +   + Q ++    + ++ LP  +Y+ L
Sbjct: 74  ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 132
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
            +L   L +++AH D+  MT  N+A+V+ PNLL  K+
Sbjct: 133 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 169

>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           ++H  A +LK + RELP PL T+ LY   VG +   + Q ++    + ++ LP  +Y+ L
Sbjct: 105 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 163
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
            +L   L +++AH D+  MT  N+A+V+ PNLL  K+
Sbjct: 164 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 200

>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           ++H  A +LK + RELP PL T+ LY   VG +   + Q ++    + ++ LP  +Y+ L
Sbjct: 113 ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 171
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
            +L   L +++AH D+  MT  N+A+V+ PNLL  K+
Sbjct: 172 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208

>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTL 163
           ++H  A +LK + RELP PL T+ LY   VG +   + Q ++    + ++ LP  +Y+ L
Sbjct: 78  ELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVL 136
Query: 164 EYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
            +L   L +++AH D+  MT  N+A+V+ PNLL  K+
Sbjct: 137 RFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 173

>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE 164
           +H  A +LK + RELP PL T+ LY   VG +   + Q ++    + ++ LP  +Y+ L 
Sbjct: 78  LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQ-RVPATLQVLQTLPEENYQVLR 136
Query: 165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
           +L   L +++AH D+  MT  N+A+V+ PNLL  K+
Sbjct: 137 FLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172

>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           FD+D   DL   D  V   ++VA  +K +F ELP+PL  Y +    V A + +  + +L 
Sbjct: 106 FDQDHNLDLAEKDFTV---NTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLH 162
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            ++E ++K P  ++   +Y+I HL++V+ +     MT+ N++I + P L+R
Sbjct: 163 ALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR 213

>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           FD+D   +L + +  V   ++VA  LK +F +LP+PL  Y L+   + A +     ++L 
Sbjct: 65  FDQDHNINLVSMEVTV---NAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 121
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            ++E V+K  P +Y    Y+I HL+RV+       MTA N++I + P L+R
Sbjct: 122 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 172

>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 87  FDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLT 146
           FD+D   +L + +  V   ++VA  LK +F +LP+PL  Y L+   + A +     ++L 
Sbjct: 75  FDQDHNINLVSMEVTV---NAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLH 131
Query: 147 QMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            ++E V+K  P +Y    Y+I HL+RV+       MTA N++I + P L+R
Sbjct: 132 ALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMR 182

>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYR 161
           V DIH++ SLLK + R L  PL T++L  +F+ A + +   + +  M + V +LP  +  
Sbjct: 67  VDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRD 126
Query: 162 TLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
           TL +L+ HL RV A    T M   N+A V+ P ++
Sbjct: 127 TLAFLMIHLQRV-AQSPHTKMDVANLAKVFGPTIV 160

>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
           + I  +AS+LK + R +P  + +  LY  +V  + Q   ++++  ++  +++LP  +   
Sbjct: 75  ESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVL 134
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL 196
           L YL G L  +  H     MTA N+A+  AP++L
Sbjct: 135 LRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSIL 168

>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 103 QDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRT 162
           Q  + VA +LK YFR+LP PL T +L  +F+   Q      +L  ++  +  LP  +   
Sbjct: 86  QSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREV 145
Query: 163 LEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           L+ L+  LS V A   +  MT  N+A+  AP+L     L+
Sbjct: 146 LQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK 185

>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain Length = 216

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPP-PH--Y 160
           D+H +A   K Y  +LPNP+    +Y   +    + +  ++  Q+ + + + P  PH  +
Sbjct: 75  DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYW 134
Query: 161 RTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
            TL+YL+ H  +++    K  + AR ++ +++P L R
Sbjct: 135 LTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFR 171

>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 108 VASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVEKLPPPHYRTLEYL 166
           +A LLK +FRELP P+    L+ + + A Q  ++ +++ T +   +  L       L Y 
Sbjct: 135 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL--LADHTVHVLRYF 192
Query: 167 IGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
              L  V+    +  M + N+A+++APNLL+  E
Sbjct: 193 FNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226

>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of The Endocytic Pathway Length = 342

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 94  DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
           D    +TI    HSVA  L ++   LP P+  Y+LY   + +    ++       R+ + 
Sbjct: 214 DTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRI------CRQVIS 267
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
           +LP  H     YL+  L  +    +   + A  +A ++   LLR
Sbjct: 268 QLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 311

>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein Ocrl Length = 366

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 94  DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
           D    +TI    HSVA  L ++   LP P+  Y+LY   + +    ++       R+ + 
Sbjct: 238 DTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRI------CRQVIS 291
Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR 197
           +LP  H     YL+  L  +    +   + A  +A ++   LLR
Sbjct: 292 QLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLR 335

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	8e-64
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	5e-60
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	7e-60
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	1e-59
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	6e-59
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	1e-58
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	4e-56
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	1e-55
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	2e-55
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	3e-55
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	4e-52
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	4e-50
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	6e-50
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	2e-47
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	5e-43
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	2e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229

 Score =  197 bits (503), Expect = 8e-64
 Identities = 78/158 (49%), Positives = 107/158 (67%), Gaps = 4/158 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           RH FD + +PDL T +  VQDIHSV SL K+YFRELPNPL TYQLY  F  AV  +  ++
Sbjct: 71  RHEFDSEHVPDL-TKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEE 129

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L ++ + +++LPPPHYRTLE+L+ HLS +A +   T M A+N+AIVWAPNLLR K++E 
Sbjct: 130 RLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 189

Query: 204 G---GVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRAS 238
               G AA   V +Q+VV EF++ +   +F  +   A 
Sbjct: 190 ACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISMAM 227

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202

 Score =  187 bits (476), Expect = 5e-60
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 84  RHTFDEDR-IPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
           +  FD D    D+     + +DI+ +   LK+YFR+LP PL TY  Y  F+ + +     
Sbjct: 59  KMAFDRDGEKADI--SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPD 116

Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           +QL  + E ++ LPP H  TL YL+ HL RV  H  +  M A N+ IV+ P L+R  EL+
Sbjct: 117 EQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 176

Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
              +AAL  +  Q +V E L+     +F
Sbjct: 177 --AMAALNDIRYQRLVVELLIKNEDILF 202

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231

 Score =  187 bits (477), Expect = 7e-60
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 84  RHTFDEDRIP-DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
                + +   +  T+     +I ++ S LK Y R LP PL  YQ   SF+ A +    +
Sbjct: 72  LSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQE 131

Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
            +++++   V +LP  + + L  L+ HL++VA +  +  MT  N+ +V+ P LLR +E  
Sbjct: 132 SRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE-- 189

Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
              VAA+  +  Q +V E L+  +  IF+
Sbjct: 190 -ETVAAIMDIKFQNIVIEILIENHEKIFN 217

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214

 Score =  186 bits (474), Expect = 1e-59
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 5/150 (3%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   +++   +L  DD+  +DIH V   LKM+FRELP PL  Y  +  FV A+++     
Sbjct: 70  RFIVNQEEKLNL--DDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNT 127

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           ++  ++  V+KLPPP+  T++ L GHL+++ A   K  M+ +++ IV+ P LLR +    
Sbjct: 128 RIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAEN--- 184

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
                   +  Q  + E ++  Y+ IF  +
Sbjct: 185 ETGNMAIHMVYQNQIAELMLSEYSKIFGSE 214

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209

 Score =  184 bits (470), Expect = 6e-59
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  FD+D   +L + +     +++VA  LK +F +LP+PL  Y L+   + A +     +
Sbjct: 62  QKQFDQDHNINLVSMEV---TVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTE 118

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L  ++E V+K  P +Y    Y+I HL+RV+       MTA N++I + P L+R      
Sbjct: 119 RLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDF--- 175

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFD 231
                L    +   V E  +      F 
Sbjct: 176 ENREFLSTTKIHQSVVETFIQQCQFFFY 203

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246

 Score =  184 bits (470), Expect = 1e-58
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 6/150 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  FD+D   DL   D     +++VA  +K +F ELP+PL  Y +    V A + +  + 
Sbjct: 103 QRQFDQDHNLDLAEKDF---TVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQ 159

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L  ++E ++K P  ++   +Y+I HL++V+ +     MT+ N++I + P L+R      
Sbjct: 160 KLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMRPDF--- 216

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
             + AL        + E  +      F  +
Sbjct: 217 STMDALTATRTYQTIIELFIQQCPFFFYNR 246

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201

 Score =  177 bits (450), Expect = 4e-56
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  F   +   L +      DIH++ SLLK + R L  PL T++L  +F+ A + +   +
Sbjct: 52  KEKFLRVKTVPLLSKV---DDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDN 108

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
            +  M + V +LP  +  TL +L+ HL RVA     T M   N+A V+ P ++       
Sbjct: 109 SIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAHAVPNP 167

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKK 233
             V  LQ +  Q  V E L+      + + 
Sbjct: 168 DPVTMLQDIKRQPKVVERLLSLPLEYWSQF 197

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242

 Score =  177 bits (451), Expect = 1e-55
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  ++     D         ++H  A +LK + RELP PL T+ LY   VG +   +   
Sbjct: 97  QQKYNMGLPVDFDQY----NELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 151

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           ++    + ++ LP  +Y+ L +L   L +++AH D+  MT  N+A+V+ PNLL  K+   
Sbjct: 152 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 208

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPRA 237
                L+ +      T+FL+ +   +F   +P  
Sbjct: 209 -AAITLKAINPINTFTKFLLDHQGELFPSPDPSG 241

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463

 Score =  183 bits (465), Expect = 2e-55
 Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 5/148 (3%)

Query: 84  RHTFDEDR-IPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQ 142
           +  FD D    D+     + +DI+ +   LK+YFR+LP PL TY  Y  F+ + +     
Sbjct: 320 KMAFDRDGEKADI--SVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPD 377

Query: 143 DQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           +QL  + E ++ LPP H  TL YL+ HL RV  H  +  M A N+ IV+ P L+R  EL+
Sbjct: 378 EQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIVFGPTLMRSPELD 437

Query: 203 YGGVAALQGVGVQAVVTEFLVVYYAAIF 230
              +AAL  +  Q +V E L+     +F
Sbjct: 438 --AMAALNDIRYQRLVVELLIKNEDILF 463

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198

 Score =  174 bits (444), Expect = 3e-55
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  ++     D    +     +H  A +LK + RELP PL T+ LY   VG +   +   
Sbjct: 61  QQKYNMGLPVDFDQYN----ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 115

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           ++    + ++ LP  +Y+ L +L   L +++AH D+  MT  N+A+V+ PNLL  K+   
Sbjct: 116 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 172

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
                L+ +      T+FL+ +   +F
Sbjct: 173 -AAITLKAINPINTFTKFLLDHQGELF 198

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201

 Score =  166 bits (423), Expect = 4e-52
 Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +   +      L  +      I  +AS+LK + R +P  + +  LY  +V  + Q   ++
Sbjct: 61  KEKLNSGVEVHLDCES-----IFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEE 115

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           ++  ++  +++LP  +   L YL G L  +  H     MTA N+A+  AP++L       
Sbjct: 116 KINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVAPSILWPPA-SS 174

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
                 +     +++ +FL+     IF
Sbjct: 175 SPELENEFTKKVSLLIQFLIENCLRIF 201

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216

 Score =  162 bits (411), Expect = 4e-50
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   D D      + D  + D+H +A   K Y  +LPNP+    +Y   +    + +  +
Sbjct: 59  RQLLDCDT----PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE 114

Query: 144 Q-LTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
           + +  +++ +    +P  ++ TL+YL+ H  +++    K  + AR ++ +++P L R   
Sbjct: 115 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA 174

Query: 201 LEYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
                            V E L+        
Sbjct: 175 AS------SDNTENLIKVIEILISTEWNERQ 199

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228

 Score =  162 bits (411), Expect = 6e-50
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   +       Y      Q  + VA +LK YFR+LP PL T +L  +F+   Q      
Sbjct: 71  RQMNEGAIDCVNYEG----QSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQ 126

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELE 202
           +L  ++  +  LP  +   L+ L+  LS V A   +  MT  N+A+  AP+L     L+
Sbjct: 127 RLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLK 185

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271

 Score =  157 bits (398), Expect = 2e-47
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           ++  D                   +A LLK +FRELP P+    L+ + + A Q    ++
Sbjct: 117 KNKVDHGE------GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGT-EE 169

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +          L       L Y    L  V+    +  M + N+A+++APNLL+  E   
Sbjct: 170 KNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHE 229

Query: 204 G-GVAALQGVGVQAVVTEFLVVYYAAIF 230
                  + + +QA V + L+ Y + I 
Sbjct: 230 KMSSNTEKKLRLQAAVVQTLIDYASDIG 257

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214

 Score =  144 bits (364), Expect = 5e-43
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 9/144 (6%)

Query: 94  DLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVE 153
           D    D    D  ++A  +K +   LP PL T +       A++++              
Sbjct: 72  DWSLSDVDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALREA---AGPVGPALEPP 128

Query: 154 KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYG------GVA 207
            LP     TL +L+ HL RVA      G   R +   + P LLR                
Sbjct: 129 TLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDG 188

Query: 208 ALQGVGVQAVVTEFLVVYYAAIFD 231
           +       A++ E L+  +    +
Sbjct: 189 SEPSPDFPALLVEKLLQEHLEEQE 212

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366

 Score =  133 bits (336), Expect = 2e-37
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 12/140 (8%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
               D          +TI    HSVA  L ++   LP P+  Y+LY   + +        
Sbjct: 234 IDCLDTS------IPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYD----- 282

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
                R+ + +LP  H     YL+  L  +    +   + A  +A ++   LLR      
Sbjct: 283 -PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPNLM 341

Query: 204 GGVAALQGVGVQAVVTEFLV 223
                         +  FL+
Sbjct: 342 ARQTPSDRQRAIQFLLGFLL 361

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 41/258 (15%), Positives = 66/258 (25%), Gaps = 100/258 (38%)

Query: 2   SDQQIYMK----RL-----LTKYLERLSTIAGSLIN----CGPVLSWMELD-----NRGR 43
           +D Q++ K    RL     L + L  L      LI+     G   +W+ LD         
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQC 178

Query: 44  RLLGKCFW----------------NSLSHFFMPEECPLGDQEVSL--------------- 72
           ++  K FW                  L +   P      D   ++               
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 73  -------------------------ISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHS 107
                                    +SC  L    TR     D +    T    +     
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 108 V----------ASLLKMYFRELPNPLCTYQ-LYHSFVGAVQQSKL----------QDQLT 146
                         L    ++LP  + T      S +    +  L           D+LT
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 147 QMRE-TVEKLPPPHYRTL 163
            + E ++  L P  YR +
Sbjct: 357 TIIESSLNVLEPAEYRKM 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3byi_A	214	RHO GTPase activating protein 15; BM046, arhgap15,	100.0
2ovj_A	201	Mgcracgap, RAC GTPase-activating protein 1; signal	100.0
2osa_A	202	N-chimaerin; RHO-GAP, GTPase activation, structura	100.0
2ee4_A	209	RHO GTPase activating protein 5 variant; all alpha	100.0
3iug_A	229	RHO/CDC42/RAC GTPase-activating protein RICS; stru	100.0
1f7c_A	231	Rhogap protein; GTPase activating protein, RHO GTP	100.0
3fk2_A	246	Glucocorticoid receptor DNA-binding factor 1; stru	100.0
1tx4_A	198	P50-rhogap; complex (GTPase activation/proto-oncog	100.0
3msx_B	201	RHO GTPase-activating protein 20; protein-proten c	100.0
1ow3_A	242	RHO-GTPase-activating protein 1; complex, GTPase,	100.0
1pbw_A	216	Rhogap domain, phosphatidylinositol 3-kinase; phos	100.0
3kuq_A	228	RHO GTPase-activating protein 7; structural genomi	100.0
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	100.0
3eap_A	271	RHO GTPase-activating protein 11A; GAP, structural	100.0
2xs6_A	214	Phosphatidylinositol 3-kinase regulatory subunit;	100.0
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	100.0

>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.1e-45  Score=304.35  Aligned_cols=199  Identities=26%  Similarity=0.434  Sum_probs=172.4

Q ss_pred             hcccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcc
Q psy3002          23 AGSLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTI  101 (240)
Q Consensus        23 ~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~  101 (240)
                      .+...++.|+-...+.++...| ++.+|+.       .++++|+++|||||++|+.+++++|++.+|++...++..  ..
T Consensus        15 ~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~--~~   85 (214)
T 3byi_A           15 IKDQIFGSHLHKVCERENSTVPWFVKQCIE-------AVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDD--SQ   85 (214)
T ss_dssp             CCCCSTTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS--GG
T ss_pred             CcCCccCCcHHHHHHHcCCCCChHHHHHHH-------HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCc--cc
Confidence            3444566677776667777888 7888986       466789999999999999999999999999997665532  22


Q ss_pred             ccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCC
Q psy3002         102 VQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTG  181 (240)
Q Consensus       102 ~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~Nk  181 (240)
                      +.|+|+||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||
T Consensus        86 ~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~Nk  165 (214)
T 3byi_A           86 WEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNL  165 (214)
T ss_dssp             GCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            35999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002         182 MTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK  233 (240)
Q Consensus       182 M~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~  233 (240)
                      ||+.|||+||||+|++++..+.+   ...++..++.+|++||+||+.||+++
T Consensus       166 M~~~NLa~vf~P~Ll~~~~~~~~---~~~~~~~~~~vve~LI~~~~~iF~~d  214 (214)
T 3byi_A          166 MSTQSLGIVFGPTLLRAENETGN---MAIHMVYQNQIAELMLSEYSKIFGSE  214 (214)
T ss_dssp             CCHHHHHHHHHHHHHCCTTSSSC---HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred             CCHHHhHHHhccccCCCCCccHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999875422   12345678899999999999999864

>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=298.14  Aligned_cols=194  Identities=25%  Similarity=0.332  Sum_probs=171.6

Q ss_pred             CCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHH
Q psy3002          30 GPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSV  108 (240)
Q Consensus        30 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~v  108 (240)
                      |.+......+...+| ++.+|+.       .++++|+++|||||++|+.+++++|++.||+|.......   ...|+|+|
T Consensus         4 g~L~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~---~~~d~h~v   73 (201)
T 2ovj_A            4 GMLADFVSQTSPMIPSIVVHCVN-------EIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS---KVDDIHAI   73 (201)
T ss_dssp             CCGGGGCCSSSSCCCHHHHHHHH-------HHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGG---GCCCHHHH
T ss_pred             CcHHHHhcccCCCCChHHHHHHH-------HHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCcccc---ccCCHHHH
Confidence            555666667888888 7889996       467789999999999999999999999999986543211   12599999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHH
Q psy3002         109 ASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVA  188 (240)
Q Consensus       109 a~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa  188 (240)
                      |++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++ +.||||+.|||
T Consensus        74 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa  152 (201)
T 2ovj_A           74 CSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLA  152 (201)
T ss_dssp             HHHHHHHHHTSSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999996 68999999999


Q ss_pred             HhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         189 IVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       189 ~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      +||||+|++++..+.+....+.++..+..+|++||+||+.||+.-.
T Consensus       153 ~vf~P~ll~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~if~~f~  198 (201)
T 2ovj_A          153 KVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQFM  198 (201)
T ss_dssp             HHHHHHHTCCSSSSCCHHHHHHHHHHHHHHHHHHHHSCHHHHHGGG
T ss_pred             HHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            9999999998776544566678889999999999999999998643

>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=298.95  Aligned_cols=192  Identities=31%  Similarity=0.511  Sum_probs=167.7

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDI  105 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~  105 (240)
                      ++.|+-...+.++...| ++.+|+.       .++.+|+++|||||++|+.+++++|++.||++. ..++..  ....|+
T Consensus         9 FG~~L~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~--~~~~d~   79 (202)
T 2osa_A            9 YSCDLTTLVKAHTTKRPMVVDMCIR-------EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISV--NMYEDI   79 (202)
T ss_dssp             TTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCST--TTCCCH
T ss_pred             cCCChHHHHHHcCCCCCcHHHHHHH-------HHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCc--cccccH
Confidence            44555555555566778 6788886       467789999999999999999999999999853 344432  123699


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      |+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+.
T Consensus        80 ~~va~lLK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~  159 (202)
T 2osa_A           80 NIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE  159 (202)
T ss_dssp             HHHHHHHHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      |||+||||+|+++++.+  ....+.++..+..+|++||+||+.||
T Consensus       160 NLa~vf~P~Ll~~~~~~--~~~~~~~~~~~~~vve~LI~~~~~iF  202 (202)
T 2osa_A          160 NLGIVFGPTLMRSPELD--AMAALNDIRYQRLVVELLIKNEDILF  202 (202)
T ss_dssp             HHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHccccCCCCCcc--HHHHHHHHHHHHHHHHHHHHcccccC
Confidence            99999999999998754  34456678889999999999999998

>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A

Probab=100.00  E-value=2.4e-44  Score=299.32  Aligned_cols=193  Identities=24%  Similarity=0.348  Sum_probs=166.3

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH  106 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~  106 (240)
                      ++.|+-... ...+.+| ++.+|+.       .++++|+++|||||++|+.+++++|++.||++...++...   ..|+|
T Consensus        13 FG~~L~~~~-~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~---~~d~~   81 (209)
T 2ee4_A           13 FGMPLQDLV-TAEKPIPLFVEKCVE-------FIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSM---EVTVN   81 (209)
T ss_dssp             SSSCHHHHS-CSSCCSCHHHHHHHH-------HHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHH---TCCHH
T ss_pred             eCCcHHHHH-hcCCCCChHHHHHHH-------HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccC---CCCHH
Confidence            444444433 3445677 6788886       4678899999999999999999999999999876554221   26999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus        82 ~va~lLK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~N  161 (209)
T 2ee4_A           82 AVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADN  161 (209)
T ss_dssp             HHHHHHHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      ||+||||+|++++..+.   ..+.+......+|++||+||+.||+++.
T Consensus       162 Laivf~P~L~~~~~~~~---~~l~~~~~~~~vve~LI~~~~~iF~~~~  206 (209)
T 2ee4_A          162 LSICFWPTLMRPDFENR---EFLSTTKIHQSVVETFIQQCQFFFYNGE  206 (209)
T ss_dssp             HHHHHHHHHSCCCCCSS---CCSCCCTTHHHHHHHHHHTHHHHTTCCC
T ss_pred             HHHHhcccccCCCCccH---HHHHHhHHHHHHHHHHHHhhHHHcCCCC
Confidence            99999999999876532   2234456678999999999999998664

>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=302.51  Aligned_cols=202  Identities=40%  Similarity=0.617  Sum_probs=164.7

Q ss_pred             cccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002          26 LINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD  104 (240)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d  104 (240)
                      ..++.|+-...+.++..+| ++.+|+.       .++++|+ +|||||++|+.+++++|++.||++...++... ....|
T Consensus        20 ~vFG~~L~~~~~~~~~~vP~iv~~~i~-------~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~-~~~~d   90 (229)
T 3iug_A           20 RVFGCDLGEHLLNSGFEVPQVLQSCTA-------FIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKE-PYVQD   90 (229)
T ss_dssp             CSTTSCHHHHHHHHCCSSCHHHHHHHH-------HHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTST-TTTTC
T ss_pred             CeECcchHHHHHhcCCCCCHHHHHHHH-------HHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccc-ccccc
Confidence            3455666666777788888 7889986       4678899 79999999999999999999999987666432 22359


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002         105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA  184 (240)
Q Consensus       105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~  184 (240)
                      +|+||++||.|||+||+||+|.++|+.|+++....+.++++..++.++.+||+.|+.+|++|+.||++|+++++.||||+
T Consensus        91 vh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  170 (229)
T 3iug_A           91 IHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHA  170 (229)
T ss_dssp             HHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCH
T ss_pred             hHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhccccccCCcccc---chhhhhhhhhhHHHHHHHHHhcchhcCCCCCCC
Q psy3002         185 RNVAIVWAPNLLRCKELEY---GGVAALQGVGVQAVVTEFLVVYYAAIFDKKNPR  236 (240)
Q Consensus       185 ~nLa~vfaP~l~~~~~~~~---~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~~  236 (240)
                      .|||+||||+|++++..+.   .......+...+..++++||+||+.||+++...
T Consensus       171 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~  225 (229)
T 3iug_A          171 KNLAIVWAPNLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISM  225 (229)
T ss_dssp             HHHHHHHHHHHCCC-------------------CHHHHHHHHHTHHHHTC-----
T ss_pred             HHHHHHHhccccCCCcccccccchHHHHHHHHHHHHHHHHHHHhHHHhCCCcHHh
Confidence            9999999999999986431   123344566777899999999999999987754

>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1

Probab=100.00  E-value=4.1e-44  Score=302.17  Aligned_cols=213  Identities=24%  Similarity=0.352  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHhhcccccCCCcchhh----hccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHH
Q psy3002          10 RLLTKYLERLSTIAGSLINCGPVLSWM----ELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRH   85 (240)
Q Consensus        10 ~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~   85 (240)
                      .+...|++.+....  -.++-|.-...    .++..+.+++.+|+.       .++.+|+++|||||++|+.+++++|++
T Consensus         3 ~~~~~W~~~m~~~~--pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~-------~le~~gl~~eGIfR~sG~~~~v~~l~~   73 (231)
T 1f7c_A            3 EDRRLWMEAMDGRE--PVYNSNKDNQSEGTAQLDSIGFSIIKKCIH-------AVETRGINEQGLYRIVGVNSRVQKLLS   73 (231)
T ss_dssp             ------------------------------CCSSHHHHHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC--CccCCcchhccccccccCCcCccHHHHHHH-------HHHHhCCCCCCeeeeCCcHHHHHHHHH
Confidence            34556777665421  12333433322    244555568889996       467789999999999999999999986


Q ss_pred             -HhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHH
Q psy3002          86 -TFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLE  164 (240)
Q Consensus        86 -~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~  164 (240)
                       .+|.+....+........|+|+||++||.|||+||+||+|.++|+.|+++.+..+.++++..++.++.+||+.|+.+|+
T Consensus        74 ~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll~~LP~~n~~~L~  153 (231)
T 1f7c_A           74 ILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLH  153 (231)
T ss_dssp             HHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCHHHHHHHH
Confidence             5787742222111112369999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         165 YLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       165 ~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      +|+.||++|+++++.||||+.|||+||||+|++++..+.   ..+.++..++.+|++||+||+.||++..
T Consensus       154 ~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~---~~~~~~~~~~~vve~LI~~~~~iF~~~~  220 (231)
T 1f7c_A          154 LLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETV---AAIMDIKFQNIVIEILIENHEKIFNTVP  220 (231)
T ss_dssp             HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CC---SGGGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccH---HHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999987532   2345667788999999999999998665

>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-43  Score=301.52  Aligned_cols=181  Identities=23%  Similarity=0.385  Sum_probs=161.3

Q ss_pred             cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q psy3002          39 DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFR  117 (240)
Q Consensus        39 ~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr  117 (240)
                      ..+.+| ++.+|+.       .++.+|+++|||||++|+.+++++|++.||++...++...   ..|+|+||++||.|||
T Consensus        64 ~~~~vP~iv~~~i~-------~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~---~~dvh~va~lLK~fLR  133 (246)
T 3fk2_A           64 PEKPIPIFIERCIE-------YIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEK---DFTVNTVAGAMKSFFS  133 (246)
T ss_dssp             SSSCSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGG---TCCHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHH-------HHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccc---cCcHHHHHHHHHHHHH
Confidence            455677 6788886       4677899999999999999999999999999987665432   2599999999999999


Q ss_pred             hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccccc
Q psy3002         118 ELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLR  197 (240)
Q Consensus       118 ~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~  197 (240)
                      +||+||+|.++|+.|+++....+.++++..++.++..||+.|+.+|++|+.||++|+++++.|+||+.|||+||||+|+|
T Consensus       134 eLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf~P~Llr  213 (246)
T 3fk2_A          134 ELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICFWPTLMR  213 (246)
T ss_dssp             HSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHHC
T ss_pred             hCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHhcccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccchhhhhhhhhhHHHHHHHHHhcchhcCCC
Q psy3002         198 CKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDK  232 (240)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~  232 (240)
                      ++..+   +..+.+......+|++||+||+.||.+
T Consensus       214 p~~~~---~~~~~~~~~~~~ive~LI~~~~~iF~n  245 (246)
T 3fk2_A          214 PDFST---MDALTATRTYQTIIELFIQQCPFFFYN  245 (246)
T ss_dssp             CCSSS---SCHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred             CCCcc---HHHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence            87653   333455667789999999999999986

>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*

Probab=100.00  E-value=9e-44  Score=293.47  Aligned_cols=188  Identities=23%  Similarity=0.361  Sum_probs=163.1

Q ss_pred             ccCCCcchhhhccc--cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc
Q psy3002          27 INCGPVLSWMELDN--RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ  103 (240)
Q Consensus        27 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~  103 (240)
                      .++.|+-...+.+.  ...| ++.+|+.       .++++|+++|||||++|+.+++++|++.||+|...++...    .
T Consensus         8 vFG~~L~~~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~----~   76 (198)
T 1tx4_A            8 QFGVSLQHLQEKNPEQEPIPIVLRETVA-------YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY----N   76 (198)
T ss_dssp             CTTSCHHHHHHHSTTCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGS----S
T ss_pred             ccCCcHHHHHhhCCCCCCCCHHHHHHHH-------HHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCcccc----c
Confidence            34555555544433  3677 7888886       4677899999999999999999999999999987665332    6


Q ss_pred             CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy3002         104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMT  183 (240)
Q Consensus       104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~  183 (240)
                      |+|++|++||.|||+||+||+|.++|+.|+++.+ .+++++++.++.++.+||+.|+.+|++|+.||++|+++++.||||
T Consensus        77 d~~~~a~lLK~flreLpePLi~~~l~~~~~~~~~-~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~  155 (198)
T 1tx4_A           77 ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN-IDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMT  155 (198)
T ss_dssp             CTHHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGG-SCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred             cchHHHHHHHHHHHHCCCcCCCHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence            8999999999999999999999999999999765 456788999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         184 ARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       184 ~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      +.|||+||||+|+++++.    ...+.++...+.++++||+||+.||
T Consensus       156 ~~nLa~vf~P~Ll~~~~~----~~~~~~~~~~~~~v~~LI~~~~~iF  198 (198)
T 1tx4_A          156 NTNLAVVFGPNLLWAKDA----AITLKAINPINTFTKFLLDHQGELF  198 (198)
T ss_dssp             HHHHHHHHHHHHCCCSSH----HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHhhhcccccCCCCc----cccHHHHHHHHHHHHHHHHhHHHhC
Confidence            999999999999999863    2345667778999999999999998

>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.2e-43  Score=289.51  Aligned_cols=188  Identities=19%  Similarity=0.241  Sum_probs=160.8

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIH  106 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~  106 (240)
                      ++.|+-...+  +.+.| ++.+|+.       .++++|+++|||||++|+.+++++|++.+|+|...++..     .|+|
T Consensus        13 FG~~L~~~~~--~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~-----~d~~   78 (201)
T 3msx_B           13 FGISLPNICE--NDNLPKPVLDMLF-------FLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDC-----ESIF   78 (201)
T ss_dssp             TTSCHHHHSG--GGCCCHHHHHHHH-------HHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTS-----SCHH
T ss_pred             eCCcHHHHhc--CCCCCHHHHHHHH-------HHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCc-----ccHH
Confidence            4444444433  34577 6778886       467889999999999999999999999999998765533     5999


Q ss_pred             HHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhh
Q psy3002         107 SVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARN  186 (240)
Q Consensus       107 ~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~n  186 (240)
                      +||++||.|||+||+||+|.++|+.|+++....+.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+.|
T Consensus        79 ~va~lLK~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~n  158 (201)
T 3msx_B           79 VIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFN  158 (201)
T ss_dssp             HHHHHHHHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhh
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         187 VAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       187 La~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      ||+||||+|++++.... .............++++||+||++||
T Consensus       159 La~vf~P~ll~~~~~~~-~~~~~~~~~~~~~iv~~LI~~~~~IF  201 (201)
T 3msx_B          159 LAVCVAPSILWPPASSS-PELENEFTKKVSLLIQFLIENCLRIF  201 (201)
T ss_dssp             HHHHHHHHHCCCCTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhccccCCCCCCC-hHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence            99999999999987532 11122223445567999999999998

>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*

Probab=100.00  E-value=4.9e-43  Score=297.46  Aligned_cols=192  Identities=23%  Similarity=0.377  Sum_probs=162.1

Q ss_pred             cCCCcchhhhccc--cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002          28 NCGPVLSWMELDN--RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD  104 (240)
Q Consensus        28 ~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d  104 (240)
                      ++.|+-...+...  ...| ++.+|+.       .++++|+++|||||++|+.+++++|++.||+|...++...    .|
T Consensus        45 FG~~L~~~~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~----~d  113 (242)
T 1ow3_A           45 FGVSLQHLQEKNPEQEPIPIVLRETVA-------YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY----NE  113 (242)
T ss_dssp             SSSCHHHHHHHSTTCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGS----SC
T ss_pred             cCCcHHHHHhhcCCCCCCCHHHHHHHH-------HHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccc----cc
Confidence            4445544444443  3677 6788886       4677899999999999999999999999999987765332    69


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002         105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA  184 (240)
Q Consensus       105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~  184 (240)
                      +|++|++||.|||+||+||+|.++|+.|+++.+. +.+++++.++.++.+||+.|+.+|++|+.||++|+++++.||||+
T Consensus       114 v~~va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  192 (242)
T 1ow3_A          114 LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTN  192 (242)
T ss_dssp             THHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCH
Confidence            9999999999999999999999999999997663 567899999999999999999999999999999999999999999


Q ss_pred             hhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCCC
Q psy3002         185 RNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKNP  235 (240)
Q Consensus       185 ~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~~  235 (240)
                      .|||+||||+|+++++.    ...+.++...+.++++||+||+.||++..+
T Consensus       193 ~NLAivf~P~Ll~~~~~----~~~~~~~~~~~~~v~~LI~~~~~iF~~~~~  239 (242)
T 1ow3_A          193 TNLAVVFGPNLLWAKDA----AITLKAINPINTFTKFLLDHQGELFPSPDP  239 (242)
T ss_dssp             HHHHHHHHHHHCCCSSH----HHHHHTHHHHHHHHHHHHHTHHHHC-----
T ss_pred             HHhHHhhcchhCCCCCc----cccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999863    234566777889999999999999997654

>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1

Probab=100.00  E-value=8.9e-43  Score=291.18  Aligned_cols=187  Identities=20%  Similarity=0.231  Sum_probs=154.7

Q ss_pred             cCCCcchhhhc--cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCcccc
Q psy3002          28 NCGPVLSWMEL--DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQ  103 (240)
Q Consensus        28 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~  103 (240)
                      ++.|+-...+.  ....+| ++.+|+.       .++++|+++|||||++|+.++ ++|++.||++. ..++.     ..
T Consensus         8 fGv~L~~l~~~~~~~~~vP~iv~~~i~-------~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~-----~~   74 (216)
T 1pbw_A            8 QALTLPDLAEQFAPPDIAPPLLIKLVE-------AIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLE-----MI   74 (216)
T ss_dssp             ----CCCHHHHCCTTSCSCHHHHHHHH-------HHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGG-----GB
T ss_pred             CCCcHHHHHhccCCCCCcCHHHHHHHH-------HHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCcc-----cc
Confidence            34455444443  245677 7888986       467789999999999999999 99999999985 33332     26


Q ss_pred             CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhhcCCCCC
Q psy3002         104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKT  180 (240)
Q Consensus       104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~--~Lp~~n~~~L~~l~~~L~~V~~~s~~N  180 (240)
                      |+|+||++||.|||+||+||+|.++|+.|+++.+ ..+.++++..++.++.  .||+.|+.+|++|+.||++|+++++.|
T Consensus        75 dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~N  154 (216)
T 1pbw_A           75 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKN  154 (216)
T ss_dssp             CHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999986 6788899999999999  999999999999999999999999999


Q ss_pred             CCChhhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCC
Q psy3002         181 GMTARNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKK  233 (240)
Q Consensus       181 kM~~~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~  233 (240)
                      |||+.|||+||||+|++++..+..  .   . ..+..+|++||+||+.||+..
T Consensus       155 kM~~~NLAivf~P~Ll~~~~~~~~--~---~-~~~~~vve~LI~~~~~iF~~~  201 (216)
T 1pbw_A          155 LLNARVLSEIFSPMLFRFSAASSD--N---T-ENLIKVIEILISTEWNERQPA  201 (216)
T ss_dssp             CCCHHHHHHHHHHHHHTCSSCCHH--H---H-HHHHHHHHHHHHTTC------
T ss_pred             CCCHHHHHHHHhhhcCCCCCCchh--h---h-HHHHHHHHHHHhhhHHhcCCC
Confidence            999999999999999999876421  1   1 778999999999999999975

>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=283.57  Aligned_cols=194  Identities=20%  Similarity=0.204  Sum_probs=161.8

Q ss_pred             ccccCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCcccc
Q psy3002          25 SLINCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQ  103 (240)
Q Consensus        25 s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~  103 (240)
                      ...++.|+....+.+....| ++.+|+.       .++++|+++|||||++|+.+++++|++.+|.+........    .
T Consensus        18 ~~vFGv~L~~~~~~~~~~vP~~v~~~i~-------~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~----~   86 (228)
T 3kuq_A           18 GSVFGVPLTVNVQRTGQPLPQSIQQAMR-------YLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEG----Q   86 (228)
T ss_dssp             TSSTTCCHHHHHHHHSSSSCHHHHHHHH-------HHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTT----C
T ss_pred             CCEECCchHHHHHHcCCCCCHHHHHHHH-------HHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCccc----C
Confidence            34466677666777777888 7888986       4778899999999999999999999999987643322222    6


Q ss_pred             CHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy3002         104 DIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMT  183 (240)
Q Consensus       104 d~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~  183 (240)
                      |+|+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+++++.|+||
T Consensus        87 ~~~~va~lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~  166 (228)
T 3kuq_A           87 SAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKENQMT  166 (228)
T ss_dssp             CHHHHHHHHHHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhccccccCCcccc----------------chhhhhhhhhhHHHHHHHHHhcchhc
Q psy3002         184 ARNVAIVWAPNLLRCKELEY----------------GGVAALQGVGVQAVVTEFLVVYYAAI  229 (240)
Q Consensus       184 ~~nLa~vfaP~l~~~~~~~~----------------~~~~~~~~~~~~~~vv~~LI~~~~~i  229 (240)
                      +.|||+||||+||+++..+.                .....+.+...+..++.+||+||+.|
T Consensus       167 ~~NLAivf~P~Ll~~~~~~~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l  228 (228)
T 3kuq_A          167 PTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL  228 (228)
T ss_dssp             HHHHHHHHHHHHHTCCCC-------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhHhHHHHhhhhcCCCCCCCCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999876421                01223445567788999999999875

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=100.00  E-value=5.3e-40  Score=302.51  Aligned_cols=192  Identities=31%  Similarity=0.514  Sum_probs=167.2

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCC-CCCCCCCCccccCH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDR-IPDLYTDDTIVQDI  105 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~-~~~~~~~~~~~~d~  105 (240)
                      ++.|+-...+.+...+| ++.+|+.       .++.+|+.+|||||++|+.+++++|++.||++. ..++...  ...|+
T Consensus       270 FG~~L~~~~~~~~~~vP~iv~~~i~-------~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~--~~~dv  340 (463)
T 3cxl_A          270 YSCDLTTLVKAHTTKRPMVVDMCIR-------EIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVN--MYEDI  340 (463)
T ss_dssp             TTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTT--TCCCH
T ss_pred             cccccchhhhccCCCCCeeHHHHHH-------HHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccc--cCCCc
Confidence            34454445555667788 6778886       467889999999999999999999999999854 3343321  23699


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      |+||++||.|||+||+||+|.++|+.|+++.+..+.+++++.++.++..||+.|+.+|++|+.||++|+++++.|+||+.
T Consensus       341 ~~va~lLK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~  420 (463)
T 3cxl_A          341 NIITGALKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAE  420 (463)
T ss_dssp             HHHHHHHHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHH
T ss_pred             chhhhHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      |||+||||+|+++++.+  ....+.++..+..+|++||+||+.||
T Consensus       421 NLAivf~P~Ll~~~~~~--~~~~~~~~~~~~~vve~LI~~~~~iF  463 (463)
T 3cxl_A          421 NLGIVFGPTLMRSPELD--AMAALNDIRYQRLVVELLIKNEDILF  463 (463)
T ss_dssp             HHHHHHHHHHCCCCCSC--TTGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHhhccccCCCCcc--HHHHHHHHHHHHHHHHHHHhchhhcC
Confidence            99999999999998754  34456778889999999999999998

>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=279.25  Aligned_cols=176  Identities=22%  Similarity=0.236  Sum_probs=140.6

Q ss_pred             cccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhhC
Q psy3002          41 RGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFREL  119 (240)
Q Consensus        41 ~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~L  119 (240)
                      ...| ++.+|+.       .+++ |+.+|||||++|+.+++++|++.||++....  ..    .|+|+||++||.|||+|
T Consensus        81 ~~iP~~l~~~~~-------~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~--~~----~~~~~va~lLK~fLReL  146 (271)
T 3eap_A           81 GHIPSFLVDACT-------SLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCL--SS----APPCDIAGLLKQFFREL  146 (271)
T ss_dssp             EEEEHHHHHHHH-------HHGG-GTTC--------CHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHS
T ss_pred             CCcChHHHHHHH-------HHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCc--cc----ccHHHHHHHHHHHHHhC
Confidence            3455 5566664       2344 7999999999999999999999999987542  22    68999999999999999


Q ss_pred             CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccccCC
Q psy3002         120 PNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCK  199 (240)
Q Consensus       120 p~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~~~~  199 (240)
                      |+||+|.++|+.|+++.+. +.+++...++.++..||+.|+.+|++|+.||++|+++++.|+||+.|||+||||+|++++
T Consensus       147 PePLl~~~ly~~~~~~~~~-~~~~~~~~~~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~  225 (271)
T 3eap_A          147 PEPILPADLHEALLKAQQL-GTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTS  225 (271)
T ss_dssp             SSCSSCGGGHHHHHHHTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCC
T ss_pred             CcccCCHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhHhccCC
Confidence            9999999999999998876 456788889999999999999999999999999999999999999999999999999998


Q ss_pred             cccc-chhhhhhhhhhHHHHHHHHHhcchhcCC
Q psy3002         200 ELEY-GGVAALQGVGVQAVVTEFLVVYYAAIFD  231 (240)
Q Consensus       200 ~~~~-~~~~~~~~~~~~~~vv~~LI~~~~~iF~  231 (240)
                      +... .......++..++.+|++||+||+.||.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~vve~LI~~~~~IF~  258 (271)
T 3eap_A          226 EGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGR  258 (271)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHTGGGTTC
T ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHhHHHHhC
Confidence            7321 1222345667788999999999999995

>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=264.40  Aligned_cols=182  Identities=20%  Similarity=0.153  Sum_probs=137.2

Q ss_pred             cCCCcchhhh--ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002          28 NCGPVLSWME--LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD  104 (240)
Q Consensus        28 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d  104 (240)
                      ++.|+-...+  .....+| ++.+|+.       .++++|+++|||||++|+.     ||+.   ....++     ...|
T Consensus        23 FGv~L~~l~~~~~~~~~vP~iv~~~i~-------~l~~~Gl~~eGIfR~sG~~-----lr~~---~~~~dl-----~~~d   82 (214)
T 2xs6_A           23 MGLTLPDLPEQFSPPDVAPPLLVKLVE-------AIERTGLDSESHYRPELPA-----PRTD---WSLSDV-----DQWD   82 (214)
T ss_dssp             --CCCCCHHHHCCTTCCSCHHHHHHHH-------HHHHHCTTCSGGGCCSCCC-----CCCC---CCCTTG-----GGCC
T ss_pred             cCcCHHHHHHhhCCCCCCCHHHHHHHH-------HHHHhCCCCCCCeeeCHHH-----HHhc---cccCCC-----ccCC
Confidence            4556555444  2345677 7888996       4778899999999999999     4431   122222     2379


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002         105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA  184 (240)
Q Consensus       105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~  184 (240)
                      +|+||++||.|||+||+||+|.++|+.|+++.+..+..++..   .++..||+.|+.+|++|+.||++|+++++.||||+
T Consensus        83 vh~va~lLK~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~  159 (214)
T 2xs6_A           83 TAALADGIKSFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAV  159 (214)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GSTTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCH
Confidence            999999999999999999999999999999998665544443   68999999999999999999999999999999999


Q ss_pred             hhHHHhhccccccCCcccc------chhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         185 RNVAIVWAPNLLRCKELEY------GGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       185 ~nLa~vfaP~l~~~~~~~~------~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      .|||+||||+|+|+++.+.      .....+.++..+..+|++||+|  .+|+.++
T Consensus       160 ~NLAivf~P~Ll~~~~~~~~~~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~d~  213 (214)
T 2xs6_A          160 RALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQEV  213 (214)
T ss_dssp             HHHHHHHHHHHHC------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred             HHHHHHHhhhhcCCcccccccccccchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence            9999999999999987431      1234567788899999999975  6887654

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=100.00  E-value=2.4e-35  Score=263.86  Aligned_cols=170  Identities=16%  Similarity=0.160  Sum_probs=134.3

Q ss_pred             ccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHH
Q psy3002          38 LDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYF  116 (240)
Q Consensus        38 ~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~fl  116 (240)
                      .....+| ++.+|+.       .++++|+.+|||||++|+.+++++|++.+|++...++  .    .|+|+||++||.||
T Consensus       194 ~~~~~iP~~v~~~i~-------~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~--~----~dvh~va~lLK~fL  260 (366)
T 3qis_A          194 ERPLQVPKEIWLLVD-------HLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI--P----GSNHSVAEALLIFL  260 (366)
T ss_dssp             -CCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC--C----SCHHHHHHHHHHHH
T ss_pred             CCCCCcChHHHHHHH-------HHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc--c----cCHHHHHHHHHHHH
Confidence            3444666 6777886       4778899999999999999999999999999876543  1    49999999999999


Q ss_pred             hhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhccccc
Q psy3002         117 RELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLL  196 (240)
Q Consensus       117 r~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l~  196 (240)
                      |+||+||+|.++|+.|+++.+.      .+.++.++..||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+|+
T Consensus       261 ReLPePLi~~~ly~~~~~~~~~------~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Ll  334 (366)
T 3qis_A          261 EALPEPVICYELYQRCLDSAYD------PRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLL  334 (366)
T ss_dssp             HHCSSCSSCHHHHHHHHHHTTC------HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHS
T ss_pred             HhCCCCCCcHHHHHHHHHHhhh------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcc
Confidence            9999999999999999998763      2457889999999999999999999999999999999999999999999999


Q ss_pred             cCCccccchhhhhhhhhhHHHHHHHHHhcc
Q psy3002         197 RCKELEYGGVAALQGVGVQAVVTEFLVVYY  226 (240)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~  226 (240)
                      |+++................-++++||++-
T Consensus       335 r~~~~~~~~~~~~~~~~~v~fi~~fL~~~~  364 (366)
T 3qis_A          335 RPPPNLMARQTPSDRQRAIQFLLGFLLGSE  364 (366)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHC---
T ss_pred             cCCCcchhhhhHHHHHHHHHHHHHHhccCC
Confidence            999754222211122233344455555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1f7ca_	191	a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI	2e-33
d1xa6a1	196	a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d	8e-31
d1tx4a_	196	a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi	3e-28
d1pbwa_	184	a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu	9e-27

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  117 bits (294), Expect = 2e-33
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 82  ITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKL 141
           +     D     +  T+     +I ++ S LK Y R LP PL  YQ   SF+ A +    
Sbjct: 41  LLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQ 100

Query: 142 QDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKEL 201
           + +++++   V +LP  + + L  L+ HL++VA +  +  MT  N+ +V+ P LLR +E 
Sbjct: 101 ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQE- 159

Query: 202 EYGGVAALQGVGVQAVVTEFLVVYYAAIFD 231
               VAA+  +  Q +V E L+  +  IF+
Sbjct: 160 --ETVAAIMDIKFQNIVIEILIENHEKIFN 187

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 8e-31
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  FD D      + +    DI+ +   LK+YFR+LP P+ TY  Y  F+ A + S   +
Sbjct: 53  KMAFDRDGEKADISANVY-PDINIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADE 111

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           +L  + E +  LPP HY TL YL+ HL +V  +     M A N+ IV+ P L+R  E   
Sbjct: 112 RLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLGIVFGPTLMRPPEDS- 170

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
             +  L  +  Q ++ + L+     +F
Sbjct: 171 -TLTTLHDMRYQKLIVQILIENEDVLF 196

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-28
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           +  ++     D    +     +H  A +LK + RELP PL T+ LY   VG +   +   
Sbjct: 59  QQKYNMGLPVDFDQYN----ALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDE-SQ 113

Query: 144 QLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKELEY 203
           ++    + ++ LP  +Y+ L +L   L +++AH D+  MT  N+A+V+ PNLL  K+   
Sbjct: 114 RVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD--- 170

Query: 204 GGVAALQGVGVQAVVTEFLVVYYAAIF 230
                L+ +      T+FL+ +   +F
Sbjct: 171 -AAITLKAINPINTFTKFLLDHQGELF 196

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.8 bits (248), Expect = 9e-27
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 84  RHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQD 143
           R   D D      + D  + D+H +A   K Y  +LPNP+    +Y   +    + +  +
Sbjct: 48  RQLLDCDT----PSVDLEMIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSE 103

Query: 144 QLTQMRETV---EKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNLLRCKE 200
           +  Q+ + +     +P  ++ TL+YL+ H  +++    K  + AR ++ +++P L R   
Sbjct: 104 EYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSA 163

Query: 201 LEYGGVAALQGVGVQAVVTEFLV 223
                            V E L+
Sbjct: 164 AS------SDNTENLIKVIEILI 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1xa6a1	196	Beta-chimaerin, C-terminal domain {Human (Homo sap	100.0
d1f7ca_	191	Graf {Chicken (Gallus gallus) [TaxId: 9031]}	100.0
d1tx4a_	196	p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96	100.0
d1pbwa_	184	p85 alpha subunit RhoGAP domain {Human (Homo sapie	100.0

>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-44  Score=290.75  Aligned_cols=192  Identities=28%  Similarity=0.486  Sum_probs=169.8

Q ss_pred             cCCCcchhhhccccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCC-CCCCCCCccccCH
Q psy3002          28 NCGPVLSWMELDNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRI-PDLYTDDTIVQDI  105 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~-~~~~~~~~~~~d~  105 (240)
                      +|.|+-...+.++..+| ++.+|+.       .++++|+++|||||++|+.++++++++.+|++.. .++..  ....|+
T Consensus         3 Fg~~L~~~~~~~~~~iP~iv~~~i~-------~l~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~--~~~~d~   73 (196)
T d1xa6a1           3 YCCDLTTLVKAHNTQRPMVVDICIR-------EIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISA--NVYPDI   73 (196)
T ss_dssp             TTSCHHHHHHHHTCSSCHHHHHHHH-------HHHHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCS--SSSCCT
T ss_pred             cCCCHHHHHHhcCCCCChHHHHHHH-------HHHHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCcccccc--ccccch
Confidence            45566666677788889 7899997       4778899999999999999999999999998653 22221  233699


Q ss_pred             HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChh
Q psy3002         106 HSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTAR  185 (240)
Q Consensus       106 ~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~  185 (240)
                      |+||++||+|||+||+||+|.+.|+.+..+.+..+.++++..++.++.+||+.|+.+|.+|+.||++|++|++.|+||+.
T Consensus        74 ~~va~~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~  153 (196)
T d1xa6a1          74 NIITGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAE  153 (196)
T ss_dssp             HHHHHHHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHH
T ss_pred             hHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         186 NVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       186 nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      |||+||||+|+++++.+  .....+++..+..++++||+||+.||
T Consensus       154 nLA~~f~P~l~~~~~~~--~~~~~~~~~~~~~iv~~LI~~~~~iF  196 (196)
T d1xa6a1         154 NLGIVFGPTLMRPPEDS--TLTTLHDMRYQKLIVQILIENEDVLF  196 (196)
T ss_dssp             HHHHHHTTTSCCCCCSC--TTGGGGTHHHHHHHHHHHHHTHHHHC
T ss_pred             hhhHHhccccccCCCcc--HHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence            99999999999987654  44456777888999999999999998

>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Graf
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.6e-43  Score=285.54  Aligned_cols=188  Identities=27%  Similarity=0.411  Sum_probs=161.5

Q ss_pred             hccccccccccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCC-CCccccCHHHHHHHHHHH
Q psy3002          37 ELDNRGRRLLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYT-DDTIVQDIHSVASLLKMY  115 (240)
Q Consensus        37 ~~~~~~~~~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~-~~~~~~d~~~va~lLK~f  115 (240)
                      +++..|.+++.+|+.       .++++|+++|||||++|+..+++++++.++.+....... ......|+|++|++||+|
T Consensus         2 ~~~~~~~~iv~~ci~-------~l~~~gl~~eGIFR~~G~~~~v~~l~~~~~~~~~~~~~~~~~~~~~dv~~va~~lK~~   74 (191)
T d1f7ca_           2 QLDSIGFSIIKKCIH-------AVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTY   74 (191)
T ss_dssp             CSSHHHHHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHH-------HHHHhCCCCCCeeeCCCCHHHHHHHHHHHhCcCcccccccccccccCHHHHHHHHHHH
Confidence            567778889999996       577889999999999999999999999999886543222 112247999999999999


Q ss_pred             HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccc
Q psy3002         116 FRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL  195 (240)
Q Consensus       116 lr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l  195 (240)
                      ||+||+||+|.+.|+.|..+.+..+.+++...++.++.+||+.|+.+|.+|+.||++|+.+++.|+||+.|||+||||+|
T Consensus        75 lreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~NkM~~~nLA~~f~P~l  154 (191)
T d1f7ca_          75 LRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTL  154 (191)
T ss_dssp             HHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHH
T ss_pred             HHhCCCCccHHHHHHHHHHHHhccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHhhchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHhcchhcCCCCC
Q psy3002         196 LRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIFDKKN  234 (240)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~  234 (240)
                      +++++..   ...+.+...+..++++||+||+.||++.+
T Consensus       155 ~~~~~~~---~~~~~~~~~~~~iv~~LI~~~~~iF~~~p  190 (191)
T d1f7ca_         155 LRPQEET---VAAIMDIKFQNIVIEILIENHEKIFNTVP  190 (191)
T ss_dssp             SCC---C---CSGGGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred             cCCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9987653   33345667788999999999999998643

>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=270.78  Aligned_cols=187  Identities=24%  Similarity=0.373  Sum_probs=162.7

Q ss_pred             cCCCcchhhhc--cccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccC
Q psy3002          28 NCGPVLSWMEL--DNRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQD  104 (240)
Q Consensus        28 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d  104 (240)
                      +|.|+-+..+.  +.+++| ++.+|+.       .++.+|+.+|||||++|+.++++++++.+|+|...++...    .+
T Consensus         7 FG~~L~~l~~~~~~~~~vP~~l~~~~~-------~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~----~~   75 (196)
T d1tx4a_           7 FGVSLQHLQEKNPEQEPIPIVLRETVA-------YLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQY----NA   75 (196)
T ss_dssp             TTSCHHHHHHHSTTCCSSCHHHHHHHH-------HHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGS----SC
T ss_pred             cCCCHHHHHhhCCCCCCCChHHHHHHH-------HHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCcccccc----cc
Confidence            44555554443  345678 6888986       4667899999999999999999999999999988776554    68


Q ss_pred             HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCCCCCCCh
Q psy3002         105 IHSVASLLKMYFRELPNPLCTYQLYHSFVGAVQQSKLQDQLTQMRETVEKLPPPHYRTLEYLIGHLSRVAAHGDKTGMTA  184 (240)
Q Consensus       105 ~~~va~lLK~flr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~  184 (240)
                      +|+||++||.|||+||+||+|.+.|+.|.++.... +++++..++.++.+||+.|+.+|.+++.||++|+.|++.|+||+
T Consensus        76 ~~~va~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~  154 (196)
T d1tx4a_          76 LHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID-ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTN  154 (196)
T ss_dssp             THHHHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSC-GGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999999887754 45688899999999999999999999999999999999999999


Q ss_pred             hhHHHhhccccccCCccccchhhhhhhhhhHHHHHHHHHhcchhcC
Q psy3002         185 RNVAIVWAPNLLRCKELEYGGVAALQGVGVQAVVTEFLVVYYAAIF  230 (240)
Q Consensus       185 ~nLa~vfaP~l~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~~~~iF  230 (240)
                      .|||+||||+|+++++    .....+++.....++++||+||+.||
T Consensus       155 ~nLa~~f~P~l~~~~~----~~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         155 TNLAVVFGPNLLWAKD----AAITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHHHHHHHHCCCSS----HHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHHhhhhcCCCC----cchhHHHHHHHHHHHHHHHHhHHhhC
Confidence            9999999999999886    33345667788999999999999998

>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p85 alpha subunit RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=263.52  Aligned_cols=168  Identities=21%  Similarity=0.287  Sum_probs=145.2

Q ss_pred             ccccc-cccccccccccccccccCCCCCCcceeeecCCcHHHHHHHHHhcCCCCCCCCCCCccccCHHHHHHHHHHHHhh
Q psy3002          40 NRGRR-LLGKCFWNSLSHFFMPEECPLGDQEVSLISCPSLPLCITRHTFDEDRIPDLYTDDTIVQDIHSVASLLKMYFRE  118 (240)
Q Consensus        40 ~~~~~-~~~~~~~~~l~~~~~~e~~gl~~eGIfR~~g~~~~i~~L~~~~d~~~~~~~~~~~~~~~d~~~va~lLK~flr~  118 (240)
                      ...+| ++.+|+.       .++++|+++|||||++|+. +++++++.+|.+.......    ..|+|++|++||+|||+
T Consensus        11 ~~~vP~~l~~~i~-------~ie~~gl~~eGIFR~~g~~-~i~~l~~~~~~~~~~~~~~----~~~~~~va~lLK~flre   78 (184)
T d1pbwa_          11 PDIAPPLLIKLVE-------AIEKKGLECSTLYRTQSSS-NLAELRQLLDCDTPSVDLE----MIDVHVLADAFKRYLLD   78 (184)
T ss_dssp             TSCSCHHHHHHHH-------HHHHHHTTCTTTTSSCCSC-CTTHHHHHSCSSSSCCCGG----GBCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHH-------HHHHhCCCCCCeeeCCchH-HHHHHHHHHhcCCCccCcc----cCCHHHHHHHHHHHHHh
Confidence            34566 6778886       4778899999999999985 6999999999986433222    37999999999999999


Q ss_pred             CCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHhhcccc
Q psy3002         119 LPNPLCTYQLYHSFVGAVQ-QSKLQDQLTQMRETVE--KLPPPHYRTLEYLIGHLSRVAAHGDKTGMTARNVAIVWAPNL  195 (240)
Q Consensus       119 Lp~pLi~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~--~Lp~~n~~~L~~l~~~L~~V~~~s~~NkM~~~nLa~vfaP~l  195 (240)
                      ||+||+|.+.|+.|+.+.. ..+.+++++.++.++.  +||+.|+.+|++|+.||++|+.+++.|+||+.|||+||||+|
T Consensus        79 Lp~plip~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~LP~~n~~~L~~L~~~l~~v~~~~~~NkM~~~nLA~~f~P~l  158 (184)
T d1pbwa_          79 LPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPML  158 (184)
T ss_dssp             SSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhhcccHhHHHHHhcchh
Confidence            9999999999999998765 5678889999999986  699999999999999999999999999999999999999999


Q ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHhc
Q psy3002         196 LRCKELEYGGVAALQGVGVQAVVTEFLVVY  225 (240)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~vv~~LI~~  225 (240)
                      ||+++.+      ........++|++||+|
T Consensus       159 ~~~~~~~------~~~~~~~~~vve~LI~n  182 (184)
T d1pbwa_         159 FRFSAAS------SDNTENLIKVIEILIST  182 (184)
T ss_dssp             HTCSSCC------HHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCC------hhhHHHHHHHHHHHHhC
Confidence            9987653      23445678899999997