Psyllid ID: psy3013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MSDTDKYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK
Secondary Structure (PSIPRED)
cccccccEEEccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEEccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEEEEccccccccccccEEEEEcccccHHHHHHHcHHHHHHHcccccEEEEEEcccccccEEEEccccccccHHHcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msdtdkymlnseevptlahsifpFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTyddgtadkqYGHALVAGIDRYPRKVTKRMNKTLFKkrskikpflkvlnynhlmptrytypdmqeklqpkelkdpmkKKKIRFQIRMKFEEK
Flexible Loop (DISEMBL)
MSDTDKYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKtyddgtadkqyghalvagidryprkvtKRMNktlfkkrskikpflkvlnynhLMPTRYTYPDMQEKlqpkelkdpmkkkkIRFQirmkfeek
Low Complexity Region (SEG)
MSDTDKYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPkelkdpmkkkkIRFQIRMKFEEK
Disordered region (IsUnstruct)
*************VPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTY********************************
Disordered Region (DISOPRED)
****DKY*LNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP******************KPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFE**
Disordered Region (DISEMBL)
********LNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK
Disordered Region (DISPRO)
*****KYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDTDKYMLNSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q7ZV82	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.603	3e-34
Q9XSU7	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.603	9e-34
Q90YU1	136	60S ribosomal protein L27	N/A	N/A	0.788	0.875	0.595	1e-33
P61354	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.595	2e-33
A1XQU5	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.595	2e-33
P61358	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.595	2e-33
Q4R8Z4	136	60S ribosomal protein L27	N/A	N/A	0.788	0.875	0.595	2e-33
P61353	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.595	2e-33
P61359	136	60S ribosomal protein L27	N/A	N/A	0.788	0.875	0.603	2e-33
P61355	136	60S ribosomal protein L27	yes	N/A	0.788	0.875	0.595	2e-33

>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+V+VL+GRYAGRKAV++K  DDGTAD+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Danio rerio (taxid: 7955)

>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           K
Sbjct: 121 K 121

Canis familiaris (taxid: 9615)

>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+V+VL+GRYAGRKAV++K  DDGTAD+ Y HALV+GIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Ictalurus punctatus (taxid: 7998)

>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Rattus norvegicus (taxid: 10116)

>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Sus scrofa (taxid: 9823)

>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Mus musculus (taxid: 10090)

>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Macaca fascicularis (taxid: 9541)

>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Homo sapiens (taxid: 9606)

>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+V+VL+GRYAGRKAV++K  DDGTAD+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K K R + ++KFEE
Sbjct: 61  KIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Hippocampus comes (taxid: 109280)

>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIK F+KV NYNHLMPTRY+   P  +  +     +DP  K+K R + ++KFEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
110671504	134	putative ribosomal protein L27e [Diaphor	0.788	0.888	1.0	2e-61
121543981	135	putative ribosomal protein L27e [Maconel	0.788	0.881	0.766	2e-47
187121184	135	ribosomal protein L27 [Acyrthosiphon pis	0.788	0.881	0.791	2e-47
157107257	136	60S ribosomal protein L27e [Aedes aegypt	0.788	0.875	0.735	2e-46
156553789	134	PREDICTED: 60S ribosomal protein L27-lik	0.788	0.888	0.781	3e-46
194462957	136	60S ribosomal protein L27e [Ochlerotatus	0.788	0.875	0.727	6e-46
70909807	135	ribosomal protein L27e [Dascillus cervin	0.788	0.881	0.758	7e-46
62083445	134	ribosomal protein L27 [Lysiphlebus testa	0.788	0.888	0.756	1e-45
332017131	224	60S ribosomal protein L27 [Acromyrmex ec	0.900	0.607	0.626	2e-45
70909811	135	ribosomal protein L27e [Georissus sp. AP	0.788	0.881	0.758	2e-45

>gi|110671504|gb|ABG82003.1| putative ribosomal protein L27e [Diaphorina citri]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT
Sbjct: 1   MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
           LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK
Sbjct: 61  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 119

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543981|gb|ABM55655.1| putative ribosomal protein L27e [Maconellicoccus hirsutus]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 109/120 (90%), Gaps = 1/120 (0%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK+GK+VLVLSGRYAGRKA++++TYDDGT++KQYGHALVAGIDRYPRKVTKRM K 
Sbjct: 1   MGKIMKSGKVVLVLSGRYAGRKAIIMRTYDDGTSEKQYGHALVAGIDRYPRKVTKRMGKA 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDM-QEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
             KKRSKIKPFLKVLNYNHLMPTRY+  D+  +KL  ++LKDPMK+KK RFQ+R+KFEE+
Sbjct: 61  QLKKRSKIKPFLKVLNYNHLMPTRYSVQDVTNDKLTVRDLKDPMKRKKYRFQVRVKFEER 120

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187121184|ref|NP_001119693.1| ribosomal protein L27 [Acyrthosiphon pisum] gi|89473716|gb|ABD72670.1| putative ribosomal protein L27e [Acyrthosiphon pisum]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 109/120 (90%), Gaps = 1/120 (0%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK+GKIVLVLSGRYAGRKAV++KTYD+GTA++QYGHALVAGIDRYPRKVTKRM++ 
Sbjct: 1   MGKIMKSGKIVLVLSGRYAGRKAVIMKTYDEGTAERQYGHALVAGIDRYPRKVTKRMSQE 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQ-EKLQPKELKDPMKKKKIRFQIRMKFEEK 151
             KKRSKIKPFLKVLNYNHLMPTRY+  D+  +K+ PK+LKDPM KKK RFQ R+KFEEK
Sbjct: 61  KLKKRSKIKPFLKVLNYNHLMPTRYSVQDVTVDKVSPKDLKDPMIKKKYRFQTRVKFEEK 120

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107257|ref|XP_001649694.1| 60S ribosomal protein L27e [Aedes aegypti] gi|157129794|ref|XP_001661768.1| ribosomal protein L27, putative [Aedes aegypti] gi|108868699|gb|EAT32924.1| AAEL014838-PA [Aedes aegypti] gi|108872089|gb|EAT36314.1| AAEL011587-PA [Aedes aegypti]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/121 (73%), Positives = 107/121 (88%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK GK+VLVL GRYAGRKA++LKT+DDGT+DKQ+GHALVAGIDRYPR+VT+RMNKT
Sbjct: 1   MGKIMKTGKVVLVLGGRYAGRKAIILKTFDDGTSDKQFGHALVAGIDRYPRRVTRRMNKT 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPD--MQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIKPF+K+LNYNHLMPTRY+ PD  +  K   K+LKDP+K+KK RFQ+R+KFEE
Sbjct: 61  RLHKRSKIKPFIKMLNYNHLMPTRYSVPDVSLDTKYSAKDLKDPVKRKKARFQVRVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553789|ref|XP_001599509.1| PREDICTED: 60S ribosomal protein L27-like isoform 1 [Nasonia vitripennis] gi|345492206|ref|XP_003426798.1| PREDICTED: 60S ribosomal protein L27-like isoform 2 [Nasonia vitripennis]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 102/119 (85%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M KIMK GK+VLVLSGRYAGRKA+V+K YDDGT DKQYGHALVAGIDRYPRKV KRM K 
Sbjct: 1   MVKIMKTGKVVLVLSGRYAGRKAIVMKNYDDGTTDKQYGHALVAGIDRYPRKVHKRMGKA 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
              KRSKIKPF+K+LNYNHLMPTRYT     EK+ PKELKDPMK+KKIRFQ R+KFEE+
Sbjct: 61  KIHKRSKIKPFVKILNYNHLMPTRYTVDLALEKVTPKELKDPMKRKKIRFQTRVKFEER 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194462957|gb|ACF72873.1| 60S ribosomal protein L27e [Ochlerotatus taeniorhynchus]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 106/121 (87%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK GK+VLVL GRYAGRKA++LKT+DDGT+DKQ+GHALVAGIDRYPR+VT+RMNK 
Sbjct: 1   MGKIMKTGKVVLVLGGRYAGRKAIILKTFDDGTSDKQFGHALVAGIDRYPRRVTRRMNKA 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPD--MQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
              KRSKIKPF+K+LNYNHLMPTRY+ PD  +  K   K+LKDP+K+KK RFQ+R+KFEE
Sbjct: 61  RIHKRSKIKPFIKMLNYNHLMPTRYSVPDVSLDNKYSAKDLKDPVKRKKARFQVRVKFEE 120

Query: 151 K 151
           +
Sbjct: 121 R 121

Source: Ochlerotatus taeniorhynchus

Species: Ochlerotatus taeniorhynchus

Genus: Ochlerotatus

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909807|emb|CAJ17390.1| ribosomal protein L27e [Dascillus cervinus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 106/120 (88%), Gaps = 1/120 (0%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK+GK+VLVLSGRYAGRKA+V+KT+DDGT+DKQYGHALVAGIDRYPRKV KRM K 
Sbjct: 1   MGKIMKSGKVVLVLSGRYAGRKAIVMKTFDDGTSDKQYGHALVAGIDRYPRKVHKRMGKA 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQE-KLQPKELKDPMKKKKIRFQIRMKFEEK 151
              KRSKIKPFLK++NYNHLMPTRY+     E K+ PK+LKDPMK+KK RFQ+R+KFEE+
Sbjct: 61  KMHKRSKIKPFLKIINYNHLMPTRYSVDIASEHKVTPKDLKDPMKRKKARFQVRVKFEER 120

Source: Dascillus cervinus

Species: Dascillus cervinus

Genus: Dascillus

Family: Dascillidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083445|gb|AAX62447.1| ribosomal protein L27 [Lysiphlebus testaceipes]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 104/119 (87%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M KIMKAGK+VLVLSGRYAGRKA+V+K YDDGT+++QYGHAL+AGIDRYPRKV KRM K 
Sbjct: 1   MVKIMKAGKVVLVLSGRYAGRKAIVMKNYDDGTSERQYGHALIAGIDRYPRKVHKRMGKA 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
              KRSKIKPF+KVLNYNHLMPTRYT     +K+ PK+LKDPMK+KKIRFQ R+KFEE+
Sbjct: 61  KIHKRSKIKPFIKVLNYNHLMPTRYTVDLTNDKVTPKDLKDPMKRKKIRFQTRVKFEER 119

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017131|gb|EGI57930.1| 60S ribosomal protein L27 [Acromyrmex echinatior]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 112/150 (74%), Gaps = 14/150 (9%)

Query: 16  TLAHSIFPFLFCRHIS--------------KMGKIMKAGKIVLVLSGRYAGRKAVVLKTY 61
            +AH  F  L+C  +               KM KIMK GK+VLVLSGRYAGRKA+V++ Y
Sbjct: 60  AVAHLSFHSLWCDQLPFLRYEKAVRCVIPYKMVKIMKIGKVVLVLSGRYAGRKAIVMRNY 119

Query: 62  DDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPD 121
           D+GTA+KQYGHA+VAGIDRYPRKV KRM K    KRSKIKPF+K+LNYNHLMPTRYT   
Sbjct: 120 DEGTAEKQYGHAMVAGIDRYPRKVHKRMGKGKLHKRSKIKPFVKILNYNHLMPTRYTVDL 179

Query: 122 MQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
             EK+ PK+LKDPMK+KK+RFQ R+KFEE+
Sbjct: 180 QLEKVAPKDLKDPMKRKKVRFQTRVKFEER 209

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909811|emb|CAJ17392.1| ribosomal protein L27e [Georissus sp. APV-2005]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 105/120 (87%), Gaps = 1/120 (0%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           MGKIMK GKIVLVLSGRYAGRKA+V+K +DDGT+DKQYGHALVAGIDRYPRKV KRM K 
Sbjct: 1   MGKIMKMGKIVLVLSGRYAGRKAIVMKNFDDGTSDKQYGHALVAGIDRYPRKVHKRMGKC 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
              KRSKIKPF+KVLNYNHLMPTRY+   +  +K+ PK+LKDPMK+KK+RFQ R+KFEE+
Sbjct: 61  KIHKRSKIKPFVKVLNYNHLMPTRYSVDFNWDQKVAPKDLKDPMKRKKVRFQTRVKFEER 120

Source: Georissus sp. APV-2005

Species: Georissus sp. APV-2005

Genus: Georissus

Family: Georissidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
FB|FBgn0039359	135	RpL27 "Ribosomal protein L27"	0.774	0.866	0.669	2.4e-37
ZFIN|ZDB-GENE-030131-4343	136	rpl27 "ribosomal protein L27"	0.788	0.875	0.570	8.8e-31
UNIPROTKB|Q9XSU7	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.570	1.4e-30
UNIPROTKB|P61355	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.561	3e-30
UNIPROTKB|P61356	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.561	3e-30
UNIPROTKB|F2Z4N3	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.561	3e-30
UNIPROTKB|P61353	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.561	3e-30
UNIPROTKB|A1XQU5	136	RPL27 "60S ribosomal protein L	0.788	0.875	0.561	3e-30
RGD|1565900	136	RGD1565900 "similar to ribosom	0.788	0.875	0.545	3e-30
RGD|621192	136	Rpl27 "ribosomal protein L27"	0.788	0.875	0.561	3e-30

FB|FBgn0039359 RpL27 "Ribosomal protein L27" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 79/118 (66%), Positives = 91/118 (77%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             M KIMK GKIV+VLSGRYAGRKA+++KT+DDGT +K +GHALVAGIDRYPRKVTK+M K 
Sbjct:     1 MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKN 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQ-EKLQPXXXXXXXXXXXIRFQIRMKFE 149
               KK+SK+KPFLK LNYNHLMPTRYT  D+  EKL P            RFQ R+KFE
Sbjct:    61 KLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKDPVKRKTHRFQTRVKFE 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

ZFIN|ZDB-GENE-030131-4343 rpl27 "ribosomal protein L27" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 69/121 (57%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+V+VL+GRYAGRKAV++K  DDGTAD+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9XSU7 RPL27 "60S ribosomal protein L27" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/121 (57%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             K
Sbjct:   121 K 121

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61355 RPL27 "60S ribosomal protein L27" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|P61356 RPL27 "60S ribosomal protein L27" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4N3 RPL27 "60S ribosomal protein L27" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61353 RPL27 "60S ribosomal protein L27" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0005840 "ribosome" evidence=TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|A1XQU5 RPL27 "60S ribosomal protein L27" [Sus scrofa (taxid:9823)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1565900 RGD1565900 "similar to ribosomal protein L27" [Rattus norvegicus (taxid:10116)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 66/121 (54%), Positives = 84/121 (69%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK+MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKLMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                K+SKIK F+KV NYNH MPTRY+     +K  +              R ++++KFEE
Sbjct:    61 KITKQSKIKSFVKVYNYNHFMPTRYSVDIPLDKTVVNKDVFRDSALKRKARREVKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|621192 Rpl27 "ribosomal protein L27" [Rattus norvegicus (taxid:10116)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/121 (56%), Positives = 83/121 (68%)

Query:    33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
             MGK MK GK+VLVL+GRY+GRKAV++K  DDGT+D+ Y HALVAGIDRYPRKVT  M K 
Sbjct:     1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query:    93 LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEK--LQPXXXXXXXXXXXIRFQIRMKFEE 150
                KRSKIK F+KV NYNHLMPTRY+     +K  +              R + ++KFEE
Sbjct:    61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query:   151 K 151
             +
Sbjct:   121 R 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55BE6	RL27_DICDI	No assigned EC number	0.5434	0.5960	0.625	yes	N/A
O74538	RL27B_SCHPO	No assigned EC number	0.4545	0.7880	0.875	yes	N/A
P0C2H7	RL27B_YEAST	No assigned EC number	0.4545	0.7880	0.875	yes	N/A
P0C2H6	RL27A_YEAST	No assigned EC number	0.4545	0.7880	0.875	yes	N/A
P51419	RL273_ARATH	No assigned EC number	0.4416	0.7880	0.8814	yes	N/A
Q9XSU7	RL27_CANFA	No assigned EC number	0.6033	0.7880	0.875	yes	N/A
P61356	RL27_BOVIN	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
P61355	RL27_CHICK	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
P61354	RL27_RAT	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
P61353	RL27_HUMAN	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
P61358	RL27_MOUSE	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
P91914	RL27_CAEEL	No assigned EC number	0.5619	0.7880	0.875	yes	N/A
A1XQU5	RL27_PIG	No assigned EC number	0.5950	0.7880	0.875	yes	N/A
Q8LCL3	RL272_ARATH	No assigned EC number	0.4583	0.7880	0.8814	yes	N/A
Q7ZV82	RL27_DANRE	No assigned EC number	0.6033	0.7880	0.875	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
cd06090	83	cd06090, KOW_RPL27, KOW motif of eukaryotic Riboso	1e-43
PTZ00471	134	PTZ00471, PTZ00471, 60S ribosomal protein L27; Pro	7e-37
pfam01777	85	pfam01777, Ribosomal_L27e, Ribosomal L27e protein	2e-24
COG2163	125	COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [	1e-14
cd00380	49	cd00380, KOW, KOW: an acronym for the authors' sur	0.003
pfam00467	32	pfam00467, KOW, KOW motif	0.003

>gnl|CDD|240514 cd06090, KOW_RPL27, KOW motif of eukaryotic Ribosomal Protein L27

 Score =  138 bits (349), Expect = 1e-43
 Identities = 59/81 (72%), Positives = 72/81 (88%)

Query: 38  KAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKR 97
           K GK+V+VLSGRYAG+KAV++K  D+GT D+ YGHALVAGIDRYPRKVTK+M+K    KR
Sbjct: 1   KPGKVVIVLSGRYAGKKAVIVKNNDEGTKDRPYGHALVAGIDRYPRKVTKKMSKKKIAKR 60

Query: 98  SKIKPFLKVLNYNHLMPTRYT 118
           SK+KPF+KV+NYNHLMPTRY+
Sbjct: 61  SKVKPFVKVVNYNHLMPTRYS 81

RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. . Length = 83

>gnl|CDD|240428 PTZ00471, PTZ00471, 60S ribosomal protein L27; Provisional

 Score =  123 bits (309), Expect = 7e-37
 Identities = 49/119 (41%), Positives = 78/119 (65%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K GK+V+V SGRYAGRKAV+++ +D  + ++ YGHALVAGI +YP+KV + M+K 
Sbjct: 1   MTKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKR 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
              +RS++  FL+V+N+ H +PTRY     +E      + D  KK + +  ++  F+ +
Sbjct: 61  TIARRSQVGVFLRVVNHKHFLPTRYNMDMSKELRGRINVSDASKKARSKQLVKKLFQAR 119

Length = 134

>gnl|CDD|201966 pfam01777, Ribosomal_L27e, Ribosomal L27e protein family

 Score = 89.6 bits (223), Expect = 2e-24
 Identities = 39/70 (55%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 84  KVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTY--PDMQEKLQPKELKDPMKKKKIR 141
           KVTKRM+K    KRSK+KPF+KV+NYNHLMPTRYT    D+++ +    LKDP K+K+ R
Sbjct: 1   KVTKRMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVEDLKKVVSKDALKDPSKRKEAR 60

Query: 142 FQIRMKFEEK 151
            +++ KFEE+
Sbjct: 61  KEVKKKFEER 70

The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Length = 85

>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M   ++ G++V+V +GR+AG+K V++K  DD       G   V G+ R    +       
Sbjct: 1   MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFV-LITGPKKVKGVPRRRINIKHLEPTD 59

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKIRFQIRMKFEEK 151
                 +     KV   N             + L+ K++++P+   +    +++  EE+
Sbjct: 60  KVIDLVRGASDEKVKKANEAAGVLAKLDKSAKNLETKKVREPLTDAERFKVMKLVKEER 118

Length = 125

>gnl|CDD|240504 cd00380, KOW, KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKK 96
          G +V VL G Y GR+ VV+        D ++G   V G             K  F  
Sbjct: 1  GDVVRVLRGPYKGREGVVVD------IDPRFGIVTVKG----ATGSKGAELKVRFDD 47

KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The KOW motif contains an invariants glycine residue and comprises alternating blocks of hydrophilic and hydrophobic residues. Length = 49

>gnl|CDD|144165 pfam00467, KOW, KOW motif

 Score = 33.2 bits (77), Expect = 0.003
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 40 GKIVLVLSGRYAGRKAVVLKTYDDG 64
          G +V V+SG + G+K  V++  D  
Sbjct: 2  GDVVRVISGPFKGKKGKVVEVDDSK 26

This family has been extended to coincide with ref. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and NusG. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PTZ00471	134	60S ribosomal protein L27; Provisional	100.0
KOG3418|consensus	136		100.0
PF01777	85	Ribosomal_L27e: Ribosomal L27e protein family; Int	99.93
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	99.77
PRK04333	84	50S ribosomal protein L14e; Validated	99.24
PTZ00065	130	60S ribosomal protein L14; Provisional	98.83
KOG3421|consensus	136		96.22
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	95.93
PF01159	108	Ribosomal_L6e: Ribosomal protein L6e ; InterPro: I	95.73
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.58
CHL00141	83	rpl24 ribosomal protein L24; Validated	93.27
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	92.59
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	92.58
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	92.04
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	91.45
PTZ00194	143	60S ribosomal protein L26; Provisional	90.89
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	90.12
KOG1694|consensus	152		89.94
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	84.23

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=100.00  E-value=6e-61  Score=372.43  Aligned_cols=118  Identities=42%  Similarity=0.776  Sum_probs=116.1

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL  112 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl  112 (151)
                      |+|||+||+|||||+||||||||||||++||||+||||+|||||||||||++||++||+++++|||++|||||++|||||
T Consensus         1 M~K~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~kVtk~M~kkki~KRskiK~FvK~vNynHl   80 (134)
T PTZ00471          1 MTKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHF   80 (134)
T ss_pred             CCccccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccchhhhhhccHHHHHHHhccccceEEEeecee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeceeecCCCCCccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013         113 MPTRYTYPDMQEKLQPKE-LKDPMKKKKIRFQIRMKFEEK  151 (151)
Q Consensus       113 mpTRY~vdi~~d~~v~~~-fk~~~~kk~akk~~k~~Feer  151 (151)
                      |||||+||++ +++++++ |+||++|++|++++++.|||+
T Consensus        81 mPTRY~vdi~-~~~v~~~~~~d~~~k~~ar~~~k~~feer  119 (134)
T PTZ00471         81 LPTRYNMDMS-KELRGRINVSDASKKARSKQLVKKLFQAR  119 (134)
T ss_pred             cccceeeecc-ccccCHHHhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999 8889999 999999999999999999985

>KOG3418|consensus

Probab=100.00  E-value=4.3e-52  Score=323.22  Aligned_cols=119  Identities=62%  Similarity=0.996  Sum_probs=116.2

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL  112 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl  112 (151)
                      |++||+||+||+||+||||||||||||++|||++|+||+|||||||||||++||++||++++++|||+++|+|+||||||
T Consensus         1 m~kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hl   80 (136)
T KOG3418|consen    1 MAKFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHL   80 (136)
T ss_pred             CcccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeceeecCCCC-CccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013         113 MPTRYTYPDMQE-KLQPKE-LKDPMKKKKIRFQIRMKFEEK  151 (151)
Q Consensus       113 mpTRY~vdi~~d-~~v~~~-fk~~~~kk~akk~~k~~Feer  151 (151)
                      |||||++|++++ ..+++| |++|++|..|+++++..|||+
T Consensus        81 MptRy~vdv~~~k~v~~kdv~~~p~~K~~a~~~~k~kfeer  121 (136)
T KOG3418|consen   81 MPTRYTVDVLALKTVINKDVFRDPVKKGTAIKEAKVKFEER  121 (136)
T ss_pred             cCcceEEeehhhhccccHHhhhChhhhhhhhhHHHHHHHHH
Confidence            999999999976 669999 999999999999999999985

>PF01777 Ribosomal_L27e: Ribosomal L27e protein family; InterPro: IPR001141 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.93  E-value=2.9e-29  Score=181.84  Aligned_cols=68  Identities=59%  Similarity=0.880  Sum_probs=59.8

Q ss_pred             hhhhhhhhhhhhhccccccceEeeecceeeeeceeecCCCC-CccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013          84 KVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDMQE-KLQPKE-LKDPMKKKKIRFQIRMKFEEK  151 (151)
Q Consensus        84 kVt~~M~kkki~KRskiK~FvK~vN~nHlmpTRY~vdi~~d-~~v~~~-fk~~~~kk~akk~~k~~Feer  151 (151)
                      +||++||+++++|||+||||||+|||||||||||+||++++ ++|+++ |+||++|++|+++++..|||+
T Consensus         1 KVtk~Mskkk~~KRskiK~FvK~iNynHlmPTRY~vd~~~~k~~v~~~~l~~~~~kk~a~k~~k~~feer   70 (85)
T PF01777_consen    1 KVTKKMSKKKIAKRSKIKPFVKVINYNHLMPTRYSVDIPDDKTVVNKDALKDPSKKKKAKKEIKKKFEER   70 (85)
T ss_dssp             ---SSSSSCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred             CccccccHHHHHHhhcceeeEEEeeccceEeeeeeeechhhhcccCHHHHhChHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999554 779999 999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein, L27 is found in fungi, plants, algae and vertebrates [, ]. The family has a specific signature at the C terminus.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_a 4A1B_N 4A19_N 4A18_N 4A1D_N 3IZR_a.

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=7.5e-20  Score=141.03  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=104.5

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL  112 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl  112 (151)
                      |++++.||+||++++|||||+++|||+++||+ .-.+.++++++|+.+++.+++..++-+.+....+-.++.++.++||.
T Consensus         1 ~~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~-~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a   79 (125)
T COG2163           1 MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDN-FVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEA   79 (125)
T ss_pred             CCccccCCeEEEEecceeCCceEEEEEEccCC-EEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHh
Confidence            67899999999999999999999999999999 66788888889999999999999999999999999999999999999


Q ss_pred             eeeceeecCCCCCccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013         113 MPTRYTYPDMQEKLQPKE-LKDPMKKKKIRFQIRMKFEEK  151 (151)
Q Consensus       113 mpTRY~vdi~~d~~v~~~-fk~~~~kk~akk~~k~~Feer  151 (151)
                      ++++|..|.+- +.+..+ ++.+..+-+..+..+..|||+
T Consensus        80 ~~~~~~~~~~~-~~~~~k~~~~~~~~~~r~~~~k~~~~~~  118 (125)
T COG2163          80 AGVLAKLDKSA-KNLETKKVREPLTDAERFKVMKLVKEER  118 (125)
T ss_pred             hhhhccccccc-hhhhhhhhhcccchHHHHHHHHHHHHHH
Confidence            99999998887 444444 888888877777777777764

>PRK04333 50S ribosomal protein L14e; Validated

Probab=99.24  E-value=1.2e-11  Score=89.55  Aligned_cols=62  Identities=34%  Similarity=0.510  Sum_probs=52.1

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeeee
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPT  115 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmpT  115 (151)
                      -+++|+||++++||++|+.+|||+.+|++       ++||+|    |.. |.       .+|       |..|.+||.+|
T Consensus         3 ~v~~GrvV~~~~Grd~gk~~vIv~i~d~~-------~vlVdg----~~~-~~-------~~r-------k~kn~khl~lt   56 (84)
T PRK04333          3 AIEVGRVCVKTAGREAGRKCVIVDIIDKN-------FVLVTG----PSL-TG-------VKR-------RRCNIKHLEPT   56 (84)
T ss_pred             cccccEEEEEeccCCCCCEEEEEEEecCC-------EEEEEC----CCc-CC-------CCC-------eeechHHEEEe
Confidence            47899999999999999999999999998       999999    643 21       112       36899999999


Q ss_pred             ceeecCCC
Q psy3013         116 RYTYPDMQ  123 (151)
Q Consensus       116 RY~vdi~~  123 (151)
                      ...++++.
T Consensus        57 ~~ki~~~~   64 (84)
T PRK04333         57 DKKVDIEK   64 (84)
T ss_pred             eEEEECCC
Confidence            99998754

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=98.83  E-value=9.3e-09  Score=80.27  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=55.3

Q ss_pred             hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013          34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM  113 (151)
Q Consensus        34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm  113 (151)
                      ..|+.+||||++..|.|+||-||||..+|..       .+||-|    | ..|. +      +|       .++|++||.
T Consensus         5 ~rfVEiGRVvli~~Gp~~GKL~vIVDIID~n-------RvLVDG----P-~~tg-V------~R-------q~i~~k~l~   58 (130)
T PTZ00065          5 KRFVEPGRLCLIQYGPDAGKLCFIVDIVTPT-------RVLVDG----A-FITG-V------KR-------QSIPLKRLK   58 (130)
T ss_pred             ccceeeceEEEEecCCCCCCEEEEEEEEcCC-------eEEEeC----C-CcCC-c------ce-------eEEeccceE
Confidence            3689999999999999999999999999998       899999    8 3332 1      12       269999999


Q ss_pred             eeceeecCCCC
Q psy3013         114 PTRYTYPDMQE  124 (151)
Q Consensus       114 pTRY~vdi~~d  124 (151)
                      +|.+.++|+-.
T Consensus        59 LT~~~v~i~r~   69 (130)
T PTZ00065         59 LTDEKIKINRG   69 (130)
T ss_pred             EccEEEecCCC
Confidence            99999999853

>KOG3421|consensus

Probab=96.22  E-value=0.0063  Score=48.31  Aligned_cols=64  Identities=25%  Similarity=0.396  Sum_probs=53.8

Q ss_pred             hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013          34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM  113 (151)
Q Consensus        34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm  113 (151)
                      +.+...|+|+++..|-|+||=++||..+|+.       .+||-|    |+-.-.+                +.+|++-+.
T Consensus         4 ~r~veVGrva~v~~G~~~GkL~AIVdviDqn-------r~lvDG----p~t~v~r----------------q~~~~~~~~   56 (136)
T KOG3421|consen    4 KRFVEVGRVALVSFGPDAGKLVAIVDVIDQN-------RALVDG----PCTGVPR----------------QAMNLKCLQ   56 (136)
T ss_pred             hhhhhcceEEEEEecCCCceEEEEEEeecch-------hhhccC----cccccch----------------hhcchhhee
Confidence            4578899999999999999999999999997       899999    6432110                268999999


Q ss_pred             eeceeecCCCC
Q psy3013         114 PTRYTYPDMQE  124 (151)
Q Consensus       114 pTRY~vdi~~d  124 (151)
                      -|-|.++++..
T Consensus        57 LT~~~~kfp~g   67 (136)
T KOG3421|consen   57 LTDFVLKFPRG   67 (136)
T ss_pred             eeeeeEecccC
Confidence            99999999875

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.93  E-value=0.009  Score=35.62  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=24.0

Q ss_pred             ccEEEEEecccccCceEEEEEecCCC
Q psy3013          39 AGKIVLVLSGRYAGRKAVVLKTYDDG   64 (151)
Q Consensus        39 pGkVVIvL~GRyAGkKaVivk~~D~G   64 (151)
                      +|..|.|++|+|+|+.+.|++..++.
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~   26 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSK   26 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCC
Confidence            68899999999999999999988876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.73  E-value=0.0023  Score=48.61  Aligned_cols=47  Identities=17%  Similarity=0.014  Sum_probs=32.9

Q ss_pred             cceEeeecceeeeeceeecCCC-C--CccCcc-cCCchhhHHHHHHHHhhhc
Q psy3013         102 PFLKVLNYNHLMPTRYTYPDMQ-E--KLQPKE-LKDPMKKKKIRFQIRMKFE  149 (151)
Q Consensus       102 ~FvK~vN~nHlmpTRY~vdi~~-d--~~v~~~-fk~~~~kk~akk~~k~~Fe  149 (151)
                      +.+++||++|+++|+..||++. +  +.++++ |+.+.+++ .++....+|+
T Consensus         4 VPLRRVnQ~yVIATSTkvDis~v~ip~~~~D~YF~~~~~~k-~k~~e~~~f~   54 (108)
T PF01159_consen    4 VPLRRVNQAYVIATSTKVDISGVKIPEKIDDAYFKRKKKKK-KKKGEGDFFA   54 (108)
T ss_dssp             --SEEESSCCCEECSCESCHCCHHH-CCTTGSSSCHCCCCH-HHHHHCHCCH
T ss_pred             CcceecccceEEEEeeEEeccccchhhccchHHHHhhhhcc-ccccHHHHHh
Confidence            3466999999999999999983 3  668888 87666333 3344555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=95.58  E-value=0.019  Score=31.92  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             eeccEEEEEecccccCceEEEEEecC
Q psy3013          37 MKAGKIVLVLSGRYAGRKAVVLKTYD   62 (151)
Q Consensus        37 lkpGkVVIvL~GRyAGkKaVivk~~D   62 (151)
                      +++|..|.|+.|.|+|..++|++...
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i~~   27 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEVDG   27 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence            57899999999999999999998653

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=93.27  E-value=0.14  Score=37.02  Aligned_cols=42  Identities=29%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      |.--+++|--|.|++|++.|+.+.|++.+.+..      .++|-|++.
T Consensus         5 ~~~~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~Vegvn~   46 (83)
T CHL00141          5 KKMHVKIGDTVKIISGSDKGKIGEVLKIIKKSN------KVIVKGINI   46 (83)
T ss_pred             eeCcccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEE
Confidence            334789999999999999999999999976653      699999765

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=92.59  E-value=0.22  Score=38.72  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      -++.|-.|.|++|.+.|+.+-|++...+..      .++|-||+.
T Consensus        45 ~IkkGD~V~VisG~~KGk~GkV~~V~~~~~------~V~VeGvn~   83 (120)
T PRK01191         45 PVRKGDTVKVMRGDFKGEEGKVVEVDLKRG------RIYVEGVTV   83 (120)
T ss_pred             eEeCCCEEEEeecCCCCceEEEEEEEcCCC------EEEEeCcEE
Confidence            489999999999999999999999976542      699999774

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=92.58  E-value=0.21  Score=35.58  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -+++|--|+|++|++.|+.+.|++.+.+..      .++|-|++..
T Consensus         6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~Vegvn~~   45 (76)
T PRK12281          6 KVKKGDMVKVIAGDDKGKTGKVLAVLPKKN------RVIVEGVKIA   45 (76)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEEE
Confidence            588999999999999999999999876542      6999997764

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=92.04  E-value=0.26  Score=36.87  Aligned_cols=41  Identities=27%  Similarity=0.526  Sum_probs=35.1

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP   82 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP   82 (151)
                      -+++|--|.|++|++.|+.+.|++.+.+..      .++|-||+.-.
T Consensus         4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~------~V~Vegvn~~k   44 (105)
T PRK00004          4 KIKKGDTVIVIAGKDKGKRGKVLKVLPKKN------KVIVEGVNIVK   44 (105)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEEcCcEEEE
Confidence            578999999999999999999999987653      69999987543

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=91.45  E-value=0.31  Score=36.53  Aligned_cols=41  Identities=29%  Similarity=0.501  Sum_probs=34.6

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP   82 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP   82 (151)
                      -++.|--|.|++|+++|+.+.|++.+.+..      .++|-|++.-.
T Consensus         3 ~ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~------~V~VegvN~~k   43 (104)
T TIGR01079         3 KIKKGDTVKVISGKDKGKRGKVLKVLPKTN------KVIVEGVNMVK   43 (104)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCC------EEEECCcEEEE
Confidence            478899999999999999999999986652      79999986543

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=90.89  E-value=0.38  Score=38.48  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++-|-.|+|++|.++|+.+-|++.+....      .++|-||+.-
T Consensus        46 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~------~ViVEgvn~~   85 (143)
T PTZ00194         46 PVRKDDEVMVVRGHHKGREGKVTAVYRKKW------VIHIEKITRE   85 (143)
T ss_pred             eeecCCEEEEecCCCCCCceEEEEEEcCCC------EEEEeCeEEE
Confidence            488999999999999999999999975542      7999997643

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=90.12  E-value=0.53  Score=36.13  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      -++-|--|.|++|.++|+.+.|++......      .++|-||..
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~------~V~Vegvn~   79 (114)
T TIGR01080        41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRY------RIYVEGVTK   79 (114)
T ss_pred             eeecCCEEEEecCCCCCCEEEEEEEEcCCC------EEEEcCeEE
Confidence            588999999999999999999999975442      699999773

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>KOG1694|consensus

Probab=89.94  E-value=0.17  Score=40.63  Aligned_cols=23  Identities=17%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             hHhHhhhhhhcceeccEEEEEec
Q psy3013          25 LFCRHISKMGKIMKAGKIVLVLS   47 (151)
Q Consensus        25 ~f~~~~~~m~k~lkpGkVVIvL~   47 (151)
                      ++..+.+++++.+.||+|+|+|+
T Consensus        22 ~~~~~~~k~r~~l~~gtvliil~   44 (152)
T KOG1694|consen   22 RYSAKPSKLRASLTPGTVLIILA   44 (152)
T ss_pred             cccccchhhhhccCCCeeEEEec
Confidence            34445577899999999999998

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=84.23  E-value=1.7  Score=33.07  Aligned_cols=39  Identities=28%  Similarity=0.476  Sum_probs=33.1

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP   82 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP   82 (151)
                      -++-|-.|+|++|.+.|+.+.|++.+...        ++|-|++.--
T Consensus         4 ~IrkGD~V~Vi~GkdKGk~GkVl~v~~k~--------V~VEGvnv~k   42 (104)
T COG0198           4 KVKKGDTVKVIAGKDKGKEGKVLKVLPKK--------VVVEGVNVVK   42 (104)
T ss_pred             ceecCCEEEEEecCCCCcceEEEEEecCe--------EEEECcEEEE
Confidence            46788999999999999999999998663        9999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
3izs_a	136	Localization Of The Large Subunit Ribosomal Protein		9e-27
4a18_N	144	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-26
3izr_a	136	Localization Of The Large Subunit Ribosomal Protein		1e-22
3zf7_a	133	High-resolution Cryo-electron Microscopy Structure		7e-20

>pdb|3IZS|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 68/86 (79%)
Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +KAGK+ +V+ GRYAG+K V++K +D+G+    +GHALVAGI+RYP KVTK+    
Sbjct: 1   MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYT 118
              KR+KIKPF+KV+NYNHL+PTRYT
Sbjct: 61  KVAKRTKIKPFIKVVNYNHLLPTRYT 86

>pdb|4A18|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 144

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 72/90 (80%)
Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K G++V++L GR+AG+KAV++K+ +DGT D+++GH LVAG++R P+KVTKRM   
Sbjct: 1   MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYPDM 122
             +KR+ +KPF+K +N NH+MPTRY+  ++
Sbjct: 61  KIQKRTSVKPFIKYVNLNHIMPTRYSVKEL 90

>pdb|3IZR|AA Chain a, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K GK V++L GR+AGRKAV+++ +++GT D+ YGH LVAG+ +YP+KV ++ +  
Sbjct: 1   MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYTYP-DMQE 124
              K+S++K FLK++N+ HLMPTRYT   D++E
Sbjct: 61  KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKE 93

>pdb|3ZF7|AA Chain a, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 133

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 35  KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLF 94
           K +K GK+V++ SGRYAG+KAV+++  D    ++ YGH+L+AGI +YPRKV + M+K   
Sbjct: 2   KFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSI 61
Query: 95  KKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQ 127
            +RS++  FL+V+N+ H +PTRY   D+  +L+
Sbjct: 62  TRRSQVGVFLRVVNHKHFLPTRYNM-DLSRELR 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
3iz5_A	216	60S ribosomal protein L1 (L1P); eukaryotic ribosom	2e-39
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	6e-39
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	3e-38

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N Length = 144

 Score =  126 bits (317), Expect = 3e-38
 Identities = 52/121 (42%), Positives = 84/121 (69%), Gaps = 2/121 (1%)

Query: 33  MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKT 92
           M K +K G++V++L GR+AG+KAV++K+ +DGT D+++GH LVAG++R P+KVTKRM   
Sbjct: 1   MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60

Query: 93  LFKKRSKIKPFLKVLNYNHLMPTRYT--YPDMQEKLQPKELKDPMKKKKIRFQIRMKFEE 150
             +KR+ +KPF+K +N NH+MPTRY+       ++L  ++      K ++R  ++  F E
Sbjct: 61  KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKNNAKSEVRDTLKKVFVE 120

Query: 151 K 151
           K
Sbjct: 121 K 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	100.0
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	100.0
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	100.0
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	99.93
2joy_A	96	50S ribosomal protein L14E; protein solution struc	99.79
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	99.76
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	99.73
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	99.72
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	99.63
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	99.58
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	99.55
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	92.68
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	92.26
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	91.97
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	91.64
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	91.62
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	91.38
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	90.95
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	89.31
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	88.7
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	88.69
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	88.45
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	80.85

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=100.00  E-value=4.1e-55  Score=342.00  Aligned_cols=118  Identities=45%  Similarity=0.814  Sum_probs=114.9

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL  112 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl  112 (151)
                      |++|++||+|||||+|||||||||||+++|+||+||||+|||||||||||++||++||++++.|||+||||||+||||||
T Consensus         1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl   80 (144)
T 4a18_N            1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI   80 (144)
T ss_dssp             -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred             CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeceee--cCCCCCccCcc-cCCchhhHHHHHHHHhhhccC
Q psy3013         113 MPTRYTY--PDMQEKLQPKE-LKDPMKKKKIRFQIRMKFEEK  151 (151)
Q Consensus       113 mpTRY~v--di~~d~~v~~~-fk~~~~kk~akk~~k~~Feer  151 (151)
                      |||||+|  |++++++|++| |+| ++|++|+++++..||||
T Consensus        81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feer  121 (144)
T 4a18_N           81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEK  121 (144)
T ss_dssp             EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHH
Confidence            9999999  99997779999 999 99999999999999985

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=99.93  E-value=8.2e-27  Score=189.08  Aligned_cols=97  Identities=24%  Similarity=0.322  Sum_probs=85.2

Q ss_pred             cCCcccchhhhhhhhhHhHhhhhhhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhh
Q psy3013          10 NSEEVPTLAHSIFPFLFCRHISKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRM   89 (151)
Q Consensus        10 ~~~~~~~~~~~~~~~~f~~~~~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M   89 (151)
                      ..|++|.--++  +=+|..|..+|+++|+||+|||+|+|||||+|||+||++|+|       ++||+|    |++||   
T Consensus        20 Ptedv~~~~~~--~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sg-------llLVtG----P~~vn---   83 (191)
T 4a18_E           20 KADDEATPFHR--RQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSG-------LLLVTG----PYKVN---   83 (191)
T ss_dssp             CCCCSCCCCCC--TTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTS-------CEEEEC----CTTTS---
T ss_pred             Ccccccccccc--cccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCC-------eEEEec----Ccccc---
Confidence            45777765444  335889999999999999999999999999999999999998       999999    99999   


Q ss_pred             hhhhhhhccccccceEeeecceeeeeceeecCC-CC-CccCcc-cCC
Q psy3013          90 NKTLFKKRSKIKPFLKVLNYNHLMPTRYTYPDM-QE-KLQPKE-LKD  133 (151)
Q Consensus        90 ~kkki~KRskiK~FvK~vN~nHlmpTRY~vdi~-~d-~~v~~~-fk~  133 (151)
                                 ++|++++|+||+|||||+|||+ ++ ..+|++ |+.
T Consensus        84 -----------~vplrrvn~~~vi~TstkvDis~vki~~~~d~YF~k  119 (191)
T 4a18_E           84 -----------GVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGR  119 (191)
T ss_dssp             -----------SCCSEEECGGGEEEEEEECCCTTCCGGGCCGGGSCC
T ss_pred             -----------CCceEEEeeeeEEeeeeEeecccccccccCHHHhcc
Confidence                       5999999999999999999998 55 448887 774

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=99.79  E-value=8e-20  Score=132.93  Aligned_cols=64  Identities=33%  Similarity=0.440  Sum_probs=55.8

Q ss_pred             hhcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeeccee
Q psy3013          33 MGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHL  112 (151)
Q Consensus        33 m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHl  112 (151)
                      |. +++||+||++++||||||++|||+++|+|       ++||+|.++++           ..+|       |++|++||
T Consensus         1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~-------~vLV~gp~~~~-----------~~~r-------k~~n~khl   54 (96)
T 2joy_A            1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTGPKDIT-----------GVKR-------RRVNILHL   54 (96)
T ss_dssp             CC-SSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEECCTTTT-----------CCCC-------EEESCSSC
T ss_pred             CC-ccccCEEEEEeecCCCCCEEEEEEEeCCC-------EEEEECCcccC-----------CcCC-------EEEchHHE
Confidence            56 89999999999999999999999999998       99999966552           1122       68999999


Q ss_pred             eeeceeecCC
Q psy3013         113 MPTRYTYPDM  122 (151)
Q Consensus       113 mpTRY~vdi~  122 (151)
                      +||+|.+|++
T Consensus        55 ~~T~~~vdi~   64 (96)
T 2joy_A           55 EPTDKKIDIQ   64 (96)
T ss_dssp             EEEEEECCCC
T ss_pred             EEeeEEEeCC
Confidence            9999999975

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=99.58  E-value=1.7e-15  Score=116.07  Aligned_cols=62  Identities=19%  Similarity=0.362  Sum_probs=56.0

Q ss_pred             hcceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceee
Q psy3013          34 GKIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLM  113 (151)
Q Consensus        34 ~k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlm  113 (151)
                      .+|+++||||+++.|+|||+.||||..+|++       +|||.|.+ +|+.                     ++|++||+
T Consensus         4 ~rfvevGRVv~i~~G~~aGklavIVdIID~n-------rvLVdGp~-V~Rq---------------------~~n~k~l~   54 (126)
T 4a18_F            4 NKFVQVGRVVYINYGADKGKLAVIVNIINQN-------RILIDGEH-IVRQ---------------------VIPIRRVH   54 (126)
T ss_dssp             CCEEETTEEEEECSSTTTTEEEEEEEEETTT-------EEEEEETT-EEEE---------------------EEEGGGEE
T ss_pred             ccceecceEEEEccCCccCCEEEEEEEecCC-------eEEEeCCC-cccc---------------------eeeccceE
Confidence            4699999999999999999999999999998       99999965 5543                     79999999


Q ss_pred             eeceeec-CCCC
Q psy3013         114 PTRYTYP-DMQE  124 (151)
Q Consensus       114 pTRY~vd-i~~d  124 (151)
                      ||.|.++ |+-.
T Consensus        55 LT~~~v~~i~r~   66 (126)
T 4a18_F           55 LTKFQIDNVELN   66 (126)
T ss_dssp             EEEEECTTCCTT
T ss_pred             EcceeccccCCC
Confidence            9999999 8853

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.55  E-value=4.4e-15  Score=106.02  Aligned_cols=62  Identities=32%  Similarity=0.501  Sum_probs=52.2

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeeee
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMPT  115 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmpT  115 (151)
                      +++||+||++++|||||+++|||+++|++       |+||+|.+.  +.|          +       -|.+|.+||.+|
T Consensus         3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~-------~vlV~g~~~--~~v----------~-------rk~kn~khl~lt   56 (83)
T 3j21_5            3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKN-------FVLVTGAGL--NKV----------K-------RRRMNIKHIEPL   56 (83)
T ss_dssp             CCCTTEEEECSSSSSSCCCEEEEEECSSS-------CEEEECCTT--TTC----------C-------CEEESCSSCEEE
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEcCCC-------EEEEECCcc--Ccc----------C-------CeEechHHEEEe
Confidence            89999999999999999999999999998       999999321  011          1       246899999999


Q ss_pred             ceeecCCC
Q psy3013         116 RYTYPDMQ  123 (151)
Q Consensus       116 RY~vdi~~  123 (151)
                      .+.++++-
T Consensus        57 ~~~i~~~~   64 (83)
T 3j21_5           57 PQKIDIPR   64 (83)
T ss_dssp             EEECCCCS
T ss_pred             eEEEECCC
Confidence            99988663

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=92.68  E-value=0.088  Score=39.16  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=35.4

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++.|--|.|++|++.|+.+-|++.+.+..      .++|-||+..
T Consensus        15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~V~VEGvN~~   54 (115)
T 2zjr_R           15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVI   54 (115)
T ss_dssp             SSCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBC
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCcEeE
Confidence            589999999999999999999999986542      7999998876

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=92.26  E-value=0.14  Score=37.49  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=33.8

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++.|--|+|++|++.|+...|++.+.++       .++|-||+..
T Consensus         3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~-------~ViVeGvN~~   41 (102)
T 3r8s_U            3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLV   41 (102)
T ss_dssp             SSCSSCEEEECSSSSTTCEEEEEEEETTT-------EEEETTCSEE
T ss_pred             CccCCCEEEEeEcCCCCeeeEEEEEEeCC-------EEEEeCeEEE
Confidence            36788889999999999999999998773       7999998754

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=91.97  E-value=0.14  Score=38.56  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=33.8

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++.|--|+|++|+|.|+.+.|++.+.+..      .++|-||+..
T Consensus        45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~------~V~VEgvn~~   84 (121)
T 3j21_U           45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRY------RIYVEGATLR   84 (121)
T ss_dssp             ECCSSSEEEECSSSCSSEEEEEEEEETTTT------EEEETTCEEE
T ss_pred             ccccCCEEEEeecCCCCcEeEEEEEEecCC------EEEEeCeEEE
Confidence            377898999999999999999999986542      7999998753

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=91.64  E-value=0.17  Score=38.07  Aligned_cols=39  Identities=28%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      -++.|-.|+|++|.|.|+.+-|++.+.+..      .++|-||+.
T Consensus        42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~------~V~VEgvn~   80 (120)
T 1vq8_T           42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL   80 (120)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred             cccCCCEEEEEecCCCCCEEEEEEEECCCC------EEEEeCeEe
Confidence            488999999999999999999999985542      699999875

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=91.62  E-value=0.15  Score=39.47  Aligned_cols=39  Identities=21%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             ceeccEEEEEecccccCce-EEEEEecCCCCCCcccceeEEecccc
Q psy3013          36 IMKAGKIVLVLSGRYAGRK-AVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkK-aVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      -++.|-.|+|++|.+.|+. +.|++.+.+..      .++|-||+.
T Consensus        48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~------~V~VEgvn~   87 (145)
T 2zkr_t           48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKY------VIYIERVQR   87 (145)
T ss_dssp             BCCTTCEEEECSSTTTTCCSEEEEEEETTTT------EEEETTCEE
T ss_pred             ccCCCCEEEEeecCCCCcceeEEEEEECCCC------EEEEeeeEe
Confidence            4889999999999999999 99999985542      799999886

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=91.38  E-value=0.14  Score=37.88  Aligned_cols=40  Identities=33%  Similarity=0.491  Sum_probs=34.4

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++.|--|+|++|++.|+.+-|++.+.+..      .++|-||+..
T Consensus         6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVEGvN~~   45 (110)
T 3v2d_Y            6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIV   45 (110)
T ss_dssp             SCCTTSEEEECSSTTTTCEEEEEEEEGGGT------EEEETTSSEE
T ss_pred             ccCCCCEEEEeEcCCCCeEeEEEEEECCCC------EEEEeCEEEE
Confidence            478898999999999999999999987642      7999998864

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=90.95  E-value=0.16  Score=35.10  Aligned_cols=33  Identities=24%  Similarity=0.534  Sum_probs=30.3

Q ss_pred             hhhcceeccEEEEEecccccCceEEEEEecCCC
Q psy3013          32 KMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDDG   64 (151)
Q Consensus        32 ~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~G   64 (151)
                      .++|.+++|-=|-|++|||+|--..||+.-|+-
T Consensus        13 ~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d~   45 (69)
T 2do3_A           13 ELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENF   45 (69)
T ss_dssp             CCCSSCCTTCEEEESSSTTTTCEEEEEEECSSC
T ss_pred             HceeeccCCCeEEEeccEEcCceEEEEEEeCCE
Confidence            489999999999999999999999999988763

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=89.31  E-value=0.32  Score=37.00  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=34.2

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      -++-|--|+|++|.|.|+.+-|++.+.+..      .++|-||+..
T Consensus        49 ~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~   88 (127)
T 3u5e_Y           49 PIRRDDEVLVVRGSKKGQEGKISSVYRLKF------AVQVDKVTKE   88 (127)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEEGGGT------EEEEETCEEE
T ss_pred             cccCCCEEEEeecCCCCccceEEEEECCCC------EEEEeCeEEE
Confidence            377899999999999999999999987542      7999998764

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=88.70  E-value=0.43  Score=36.66  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      ++-|--|+|++|.|.|+.+-|++.+....      .++|-||+..
T Consensus        49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~------~V~VEgVn~~   87 (135)
T 4a17_S           49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKW------AIHVEKISKN   87 (135)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCCEE
T ss_pred             ccCCCEEEEeecCCCCceeeEEEEEcCCC------EEEEeCeEEE
Confidence            77899999999999999999999987642      7999998864

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=88.45  E-value=0.53  Score=33.96  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=29.3

Q ss_pred             EEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccC
Q psy3013          41 KIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRY   81 (151)
Q Consensus        41 kVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdry   81 (151)
                      --|+|++|++.|+..-|++.+.+..      .++|-|++..
T Consensus         2 D~V~Vi~GkdKGk~GkV~~V~~~~~------~ViVeGvN~~   36 (96)
T 2ftc_N            2 DTVEILEGKDAGKQGKVVQVIRQRN------WVVVGGLNTH   36 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEECCCC------EEEEeCCEEE
Confidence            3588999999999999999986542      7999998765

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=80.85  E-value=0.25  Score=40.03  Aligned_cols=40  Identities=20%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013          37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP   82 (151)
Q Consensus        37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP   82 (151)
                      ++.|--|+|++|++.|+.+.|++.+.+..      .++|-||+..-
T Consensus        69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~------rViVEGVN~vk  108 (191)
T 3bbo_W           69 VKVGDTVKVISGGEKGKIGEISKIHKHNS------TVIIKDLNFKT  108 (191)
T ss_dssp             SCCSSCEEECSSSSTTCCCSCCCCCSSSC------CCCCSSCCCCC
T ss_pred             eecCCEEEEeecCCCCceEEEEEEECCCC------EEEEeCCEEEE
Confidence            88999999999999999999999985542      69999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d2joya1	96	b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob	3e-06

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 26/106 (24%)

Query: 35  KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLF 94
             ++ G+I + + GR AG K V++   DD          LV G    P+ +T        
Sbjct: 2   PAIEVGRICVKVKGREAGSKCVIVDIIDD-------NFVLVTG----PKDITGVK----- 45

Query: 95  KKRSKIKPFLKVLNYNHLMPTRYTYPDMQEKLQPKELKDPMKKKKI 140
                     + +N  HL PT     D+Q+    +E+K  +++  +
Sbjct: 46  ---------RRRVNILHLEPTDKKI-DIQKGASDEEVKKKLEESNL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	99.66
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	94.02
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	93.02
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	93.0
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	90.04
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	89.53

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=3.7e-17  Score=118.28  Aligned_cols=65  Identities=31%  Similarity=0.471  Sum_probs=57.8

Q ss_pred             cceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCchhhhhhhhhhhhhhccccccceEeeecceeee
Q psy3013          35 KIMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPRKVTKRMNKTLFKKRSKIKPFLKVLNYNHLMP  114 (151)
Q Consensus        35 k~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~kVt~~M~kkki~KRskiK~FvK~vN~nHlmp  114 (151)
                      +++++||||++++||||||+||||+.+|+|       ++||+|    |..+|.              ...+++|++|++|
T Consensus         2 ~~VevGrV~ii~~G~~~GK~~vIvdiid~~-------rvLVdG----P~~~tg--------------V~r~~in~k~l~l   56 (96)
T d2joya1           2 PAIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG----PKDITG--------------VKRRRVNILHLEP   56 (96)
T ss_dssp             CSSSTTEEEECSSSSTTCCEEEEEEECSSS-------CEEEEC----CTTTTC--------------CCCEEESCSSCEE
T ss_pred             CceeccEEEEEeecCCCCCEEEEEEEecCC-------eEEEec----ccccCC--------------cccEEEchHHEEe
Confidence            478999999999999999999999999998       899999    887774              3344799999999


Q ss_pred             eceeecCCCC
Q psy3013         115 TRYTYPDMQE  124 (151)
Q Consensus       115 TRY~vdi~~d  124 (151)
                      |.+++|++..
T Consensus        57 T~~~i~i~~~   66 (96)
T d2joya1          57 TDKKIDIQKG   66 (96)
T ss_dssp             EEEECCCCSS
T ss_pred             ccEEEEccCC
Confidence            9999998743

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.018  Score=40.26  Aligned_cols=40  Identities=25%  Similarity=0.523  Sum_probs=34.2

Q ss_pred             eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCch
Q psy3013          37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPR   83 (151)
Q Consensus        37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~   83 (151)
                      |+.|--|+|++|+..|+.+.|++.+.++       .++|-||+-.-+
T Consensus         2 ikkGD~V~VisGkdKGK~G~V~~V~~~~-------~viVeGvN~~kk   41 (99)
T d2gycs1           2 IRRDDEVIVLTGKDKGKRGKVKNVLSSG-------KVIVEGINLVKK   41 (99)
T ss_dssp             CCTTSEEECSSSTTTTCEEEEEEECTTS-------EEEETTCCEECT
T ss_pred             ccCCCEEEEeeCCCCCCceEEEEEECCC-------eEEEeCeEEEEE
Confidence            5678899999999999999999998765       699999875543

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.032  Score=36.38  Aligned_cols=33  Identities=24%  Similarity=0.588  Sum_probs=29.9

Q ss_pred             hhhhcceeccEEEEEecccccCceEEEEEecCC
Q psy3013          31 SKMGKIMKAGKIVLVLSGRYAGRKAVVLKTYDD   63 (151)
Q Consensus        31 ~~m~k~lkpGkVVIvL~GRyAGkKaVivk~~D~   63 (151)
                      +.++|.+++|-=|-|++|||+|.-..||+.-++
T Consensus         5 ~~LrK~F~~GDhVkVi~G~~~g~tGlVV~v~~~   37 (62)
T d2do3a1           5 QELRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN   37 (62)
T ss_dssp             CCCCSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred             HHheeccCCCCeEEEeccEEcCccEEEEEEeCC
Confidence            347999999999999999999999999998655

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.00  E-value=0.035  Score=39.41  Aligned_cols=40  Identities=30%  Similarity=0.506  Sum_probs=35.0

Q ss_pred             eeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCc
Q psy3013          37 MKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYP   82 (151)
Q Consensus        37 lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP   82 (151)
                      ++-|--|+|++|++.|+.+.|++.+.+..      .++|-||+-.-
T Consensus        13 ikkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~k   52 (110)
T d2zjrr1          13 FKKGDTVIVLSGKHKGQTGKVLLALPRDQ------KVVVEGVNVIT   52 (110)
T ss_dssp             SCTTSEEECCSSSSTTCEEEEEEEETTTT------EEEESSSCBCC
T ss_pred             eeCCCEEEEeecCCCCcceEEEEEECCCC------EEEEeCcEEEE
Confidence            77899999999999999999999997653      79999987654

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.04  E-value=0.14  Score=36.71  Aligned_cols=39  Identities=28%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEecccc
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDR   80 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdr   80 (151)
                      -++.|-.|.|++|.+.|+.+-|++.+.+..      .++|-||+.
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~------~V~Vegin~   79 (119)
T d1vqot1          41 RVNAGDTVEVLRGDFAGEEGEVINVDLDKA------VIHVEDVTL   79 (119)
T ss_dssp             ECCTTCEEEECSSTTTTCEEEEEEEETTTT------EEEETTCEE
T ss_pred             ceeCCCEEEEeecCCCCCcceEEEEECCCC------EEEEeCcEE
Confidence            478999999999999999999999875542      799999864

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=89.53  E-value=0.016  Score=40.69  Aligned_cols=42  Identities=31%  Similarity=0.484  Sum_probs=35.4

Q ss_pred             ceeccEEEEEecccccCceEEEEEecCCCCCCcccceeEEeccccCch
Q psy3013          36 IMKAGKIVLVLSGRYAGRKAVVLKTYDDGTADKQYGHALVAGIDRYPR   83 (151)
Q Consensus        36 ~lkpGkVVIvL~GRyAGkKaVivk~~D~Gt~dr~y~~aLVaGIdryP~   83 (151)
                      -++.|--|.|++|++.|+.+.|++.+.+..      .++|.|++-.-+
T Consensus         5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~~~------~ViVeGvN~~kk   46 (101)
T d2j01y1           5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKY------AVIVEGVNIVKK   46 (101)
T ss_dssp             CSCCSSCEECCSSTTSSCCBSCCCCCCTTC------BCCTTSCCCCCC
T ss_pred             EEECCCEEEEeeCCCCCCeEEEEEEECCCC------EEEEEcceEEEE
Confidence            367888999999999999999999997763      699999885443