Psyllid ID: psy3014
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | 2.2.26 [Sep-21-2011] | |||||||
| O54981 | 543 | Stress-induced-phosphopro | yes | N/A | 0.935 | 0.981 | 0.520 | 1e-156 | |
| Q4R8N7 | 543 | Stress-induced-phosphopro | N/A | N/A | 0.935 | 0.981 | 0.526 | 1e-155 | |
| O35814 | 543 | Stress-induced-phosphopro | yes | N/A | 0.935 | 0.981 | 0.526 | 1e-155 | |
| Q3ZBZ8 | 543 | Stress-induced-phosphopro | yes | N/A | 0.935 | 0.981 | 0.524 | 1e-155 | |
| P31948 | 543 | Stress-induced-phosphopro | yes | N/A | 0.935 | 0.981 | 0.524 | 1e-155 | |
| Q60864 | 543 | Stress-induced-phosphopro | yes | N/A | 0.935 | 0.981 | 0.529 | 1e-154 | |
| Q9USI5 | 591 | Heat shock protein sti1 h | yes | N/A | 0.954 | 0.920 | 0.409 | 1e-115 | |
| Q54DA8 | 564 | Protein STIP1 homolog OS= | yes | N/A | 0.947 | 0.957 | 0.377 | 1e-103 | |
| P15705 | 589 | Heat shock protein STI1 O | yes | N/A | 0.947 | 0.916 | 0.371 | 2e-97 | |
| Q43468 | 569 | Heat shock protein STI OS | no | N/A | 0.942 | 0.943 | 0.382 | 3e-94 |
| >sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 289/555 (52%), Positives = 396/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I++++ PS + TK++DPR+MT
Sbjct: 120 AER--KFMNPFNLPNLYQKLENDPRTRTLLSDPTYRELIEQLRNKPSDLGTKIQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S MD + + +P P K EP +++L + ++ A K
Sbjct: 178 TLSVLLGVDLGS---------MDEEEEAATPPPPPPSKKEAK-PEPMEEDLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKE+GNEAYKKK+F+ AL HY++A E DPT++T+ N AAV+FE+ +Y++C E + IE
Sbjct: 228 EKEMGNEAYKKKDFDMALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEERYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KALELD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALELDSSCKEAADG 467
Query: 486 YRQCSIAV---SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Cricetulus griseus (taxid: 10029) |
| >sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 292/555 (52%), Positives = 396/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVELKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I++++ PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S MD + + +P P P KP E+ +L + ++ A K
Sbjct: 178 TLSVLLGVDLGS---------MDEEEEVATPPPPPPPKKETKPEPMEE-DLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI- 308
EKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E + I
Sbjct: 228 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAID 287
Query: 309 ---ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
ENR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSRKEAADG 467
Query: 486 YRQCSIA---VSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Macaca fascicularis (taxid: 9541) |
| >sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 292/555 (52%), Positives = 397/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I+++Q PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNLPNLYQKLENDPRTRTLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S MD + + +P P P KP E+ +L + ++ A K
Sbjct: 178 TLSVLLGVDLGS---------MDEEEEAATPPPPPPPKKEAKPEPMEE-DLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F++AL HY+KA E DPT++T+ N AAV+FE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDKALKHYDKAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEERYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAV---SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Rattus norvegicus (taxid: 10116) |
| >sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/555 (52%), Positives = 395/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRTK L+DP+Y ++I++++ PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNMPNLYQKLESDPRTKTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S MD + + +P P P KP E+ +L + ++ A +
Sbjct: 178 TLSVLLGVDLGS---------MDEEEEVATPPPPPPPKKETKPEPMEE-DLPENKKQALR 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGNEAYKKK+F+ AL HY+KA + DPT++T+ N AAVYFE+ +Y QC E + IE
Sbjct: 228 EKELGNEAYKKKDFDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD++ EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADG 467
Query: 486 YRQCSIAV---SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Bos taurus (taxid: 9913) |
| >sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/555 (52%), Positives = 395/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I++++ PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S MD + + +P P P KP E+ +L + ++ A K
Sbjct: 178 TLSVLLGVDLGS---------MDEEEEIATPPPPPPPKKETKPEPMEE-DLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAV---SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Homo sapiens (taxid: 9606) |
| >sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/555 (52%), Positives = 395/555 (71%), Gaps = 22/555 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I+++Q PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNLPNLYQKLENDPRTRSLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVLLGV++ S D EE P PP P K P + PE+K + A K
Sbjct: 178 TLSVLLGVDLGSM----DEEEEAATPPPPPPPKKEPKPEPMEEDLPENK------KQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F++AL HY++A E DPT++T+ N AAV+FE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDKALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK +K
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
E+E+ AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAV---SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB). Mus musculus (taxid: 10090) |
| >sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sti1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/588 (40%), Positives = 353/588 (60%), Gaps = 44/588 (7%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK KGNAA ++ AI+ +++AI LD NHIL+SNRSA +A E +Y AL+DA K
Sbjct: 5 LKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTE 64
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV---RNQEMNDM 130
LKPDW KG+SRKG+AL LG + S YEEGLK D NN Q+ +K V + Q +
Sbjct: 65 LKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAASGA 124
Query: 131 NRGDPFANL---FSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRM 187
+PFA L SDP +L +P T L+D +++ +++IQ++P + +L DPRM
Sbjct: 125 GGFNPFAKLGSQLSDPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRM 184
Query: 188 MTTLSVLLGVNMSSTMGDGDAEEMDVD----PQPPSPK------KAPSPPPAKKPAEPED 237
M + +L+G++++ G+G AEE + P +P + +PPP + +EP +
Sbjct: 185 MKVIGMLMGIDINMNAGEGAAEEQEKKEEFAPSSSTPSADSAKPETTNPPPQPQASEPME 244
Query: 238 KNLTDEQ-----------RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN 286
++ T E+ + A +EK++GNE YKK+NF A+ Y KA + DIT+ NN
Sbjct: 245 EDKTAEELEEAATKEALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWD-TYKDITYLNN 303
Query: 287 IAAVYFERKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342
+AA YFE + D CI+ IE RADFKLIAKAL R+G Y+K D A Y++
Sbjct: 304 LAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLIAKALGRLGTTYQKRGDLVKAIDYYQ 363
Query: 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
+S++EHRTP+I + + + EK + ++++AYIDP KAEE++ +GNELFK+G +A+A+KEYT
Sbjct: 364 RSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYT 423
Query: 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
E R P DP+ + NRAA Y K+ A ++DC ++LDP F K ++RK + L ++
Sbjct: 424 EMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDY 483
Query: 463 SKAIDAYEKALELD------ASNAEAVEG-YRQCSIAVSS-----NPEEVRKRAMGDPEV 510
+K IDA +A E+D N +E +C A++S EE R DPEV
Sbjct: 484 NKCIDACNEASEVDRREPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEV 543
Query: 511 QQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVLA 558
IL+DPAM+ IL Q + +P AL +H+KNP + SKI+KL+ SG+I L
Sbjct: 544 LGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIASGVIRLG 591
|
May play a role in mediating the heat shock response of some HSP70 genes. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 211/559 (37%), Positives = 334/559 (59%), Gaps = 19/559 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K++GNAA + ++ A++ + +AI+LD +NHIL+SNRSA+ E AL DA+K I
Sbjct: 11 FKNQGNAAFSSKDYNSAVKCFDQAIELDPSNHILYSNRSASLLALDKNEDALTDAKKAIE 70
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
LKPDW KGY R+ +AL LGR++E+ + E GLK+DP N+Q+++A++D + +
Sbjct: 71 LKPDWSKGYLRETNALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDAQYATTGAKDPA 130
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSV 193
ANLFS N+ +L+ +P+T PF P +V ++ +I K+PSL + + D R T L V
Sbjct: 131 SAMANLFSAQNL-TKLRFNPKTAPFFQQPDFVAIMDQISKNPSLFSQYIADQRFSTCLGV 189
Query: 194 LLGVNMSSTMG-----DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248
LLGV+++ G + P P + P +PE +T+ Q
Sbjct: 190 LLGVDINQGPGAPPQSQQPTPQQPTPTPQQPTPTPQQPKPTEAPKKPEAPPMTESQ---- 245
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
KE++LGN+AY KK FE+A+ HY+KAVE D +DI NN AAV E+++ D+ IE + +
Sbjct: 246 KERDLGNKAYAKKEFEQAIVHYDKAVELDSSDILAMNNKAAVLIEQQKLDEAIETCKKAL 305
Query: 309 EN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
E RAD+++ +K R+GN Y K +A + ++ E + + + ++EK
Sbjct: 306 EKAQEIRADYRVKSKVYTRLGNIYLKKNQLDDAYKAYSSAVLEDKNADTTANMKKIEKLK 365
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
K+ + +AY+ ++ K +G E FK G++ +A+K + EAI RNP D YSNR+A Y+K
Sbjct: 366 KQRDDEAYLSVDQSIIEKNKGVEHFKKGEFPEAIKCFEEAIRRNPKDHTIYSNRSAAYSK 425
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
L + L +KD + C++L+P F+KG+IRKG L M++ +A++ Y++ L ++A+N E ++
Sbjct: 426 LLEYKLAIKDADKCIELEPTFIKGYIRKGTALFAMREYQQALEVYDQGLRIEANNPELLD 485
Query: 485 GYRQCSIAVSS-----NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKN 539
R+ A++ EE ++A DPE+Q+IL DP M IL+ M +P A DHLKN
Sbjct: 486 LSRKTVAALTKLQSTLTDEERLQQAAKDPEIQKILSDPIMNQILKDMSENPAAAQDHLKN 545
Query: 540 PEIASKIQKLVNSGLIVLA 558
P I +K QKLVN+G++ L
Sbjct: 546 PLIMAKFQKLVNAGIVKLG 564
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 215/578 (37%), Positives = 325/578 (56%), Gaps = 38/578 (6%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGT-NHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K +GNAA A ++ +AIE +++AI++ T NH+L+SNRSA + + AL DA + +
Sbjct: 9 KQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKFSDALNDANECVK 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNR 132
+ P W KGY+R G+A LG E+ S Y++ L+LD +N+ KE + V R Q+
Sbjct: 69 INPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQP 128
Query: 133 GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL-KDPRMMTTL 191
LF+DPN+ L+ +P+T + DP V + +++P + L DPR+MT +
Sbjct: 129 DLGLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIM 188
Query: 192 SVLLGV-------NMSSTM------GDGDAEEMDVDPQPPS--PKKAPSPPPAK---KPA 233
+ L+GV N S++M ++ D +PQ S K+ S P K K +
Sbjct: 189 ATLMGVDLNMDDINQSNSMPKEPETSKSTEQKKDAEPQSDSTTSKENSSKAPQKEESKES 248
Query: 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293
EP + + D + A KEK GN+ YK + F+EA+ HYNKA E DIT+ NN AA +E
Sbjct: 249 EPMEVDEDDSKIEADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE 307
Query: 294 RKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349
+ EY+ I +E RAD+K+I+K+ RIGN Y K+ D K Y++KS++EHR
Sbjct: 308 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 367
Query: 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
T +I T + EK++K+ E +AY++P KAEEA+ G E F + +AVK YTE I R P
Sbjct: 368 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 427
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+D + YSNRAA KL +F + DC ++ DP F++ +IRK +++ + A++
Sbjct: 428 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 487
Query: 470 EKALELDA--SNAEAVEGYRQCSIAVSS----------NPEEVRKRAMGDPEVQQILRDP 517
+ A DA +N + Q S PEE +RAM DPEV I++DP
Sbjct: 488 DAARTKDAEVNNGSSAREIDQLYYKASQQRFQPGTSNETPEETYQRAMKDPEVAAIMQDP 547
Query: 518 AMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLI 555
M+ IL+Q Q +P AL +H+KNPE+ KIQ L+ +G+I
Sbjct: 548 VMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAGII 585
|
May play a role in mediating the heat shock response of some HSP70 genes. It is required for optimal growth of yeast cells at both low and high temperature. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 216/564 (38%), Positives = 316/564 (56%), Gaps = 27/564 (4%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K KGNAA A +F A+ +S+AI L +NH+L+SNRSAA +KT+ L
Sbjct: 6 KAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSNRSAATLPP-ELRGGPSRRQKTVDL 64
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD 134
KPDWPK YSR G+A L R++++ + +P+N +K + D + +
Sbjct: 65 KPDWPKAYSRLGAAHLGLRRHRDASPPTKPASNSNPDNAALKSGLADAQ-AAASRPPPTS 123
Query: 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVL 194
PFA FS P+++ + P P Q + P + + R+M + VL
Sbjct: 124 PFATAFSGPDMWARSPPTPPHV-QPPGPRVRQDHAGHPEGPQQVQPAFEYQRVMHAIGVL 182
Query: 195 LGVNMSS-------TMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247
L V + + D D E +V QP + + + E E+K D + A
Sbjct: 183 LNVKIQTPNHDENDHDADDDVSEDEVVSQPEPEHEPEAAVEVAEEEEEEEKETRDRKGQA 242
Query: 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
+KEKE GN AYKKK+FE A+ HY+KA+E D DI++ N AAVY E +++ CI+ +
Sbjct: 243 QKEKEAGNAAYKKKDFETAIGHYSKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKA 302
Query: 308 IEN----RADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+E R+D+K+IA+AL R G KM +D++ A F+K+++E+R P+ ++E
Sbjct: 303 VERGKELRSDYKMIARALTRKGTALAKMAKCSKDFEPAIEIFQKALTENRNPDTLKKLNE 362
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
EK KE E++ Y DP A+EA+E+GNELFK KY +A K YTEAI RNP D K YSNRA
Sbjct: 363 AEKAKKELEQQEYFDPKLADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRA 422
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
ACYTKL A GLKD E C++LDP F KG+ RKG + M++ KA++ Y + L+ D +N
Sbjct: 423 ACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNN 482
Query: 480 AEAVEGYRQCSIAVSS------NPEEVRKR---AMGDPEVQQILRDPAMRLILEQMQNDP 530
E ++G R+C ++ PEE+++R AM DPE+Q IL+DP M +L Q +P
Sbjct: 483 QELLDGIRRCVEQINKASRGDFTPEELKERQAKAMQDPEIQSILQDPVMTQVLTDFQENP 542
Query: 531 RALSDHLKNPEIASKIQKLVNSGL 554
RA +H+KNP + +K Q + G
Sbjct: 543 RAAEEHVKNPMVMNKTQNVTVPGC 566
|
Glycine max (taxid: 3847) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | ||||||
| 193636512 | 542 | PREDICTED: stress-induced-phosphoprotein | 0.929 | 0.977 | 0.642 | 0.0 | |
| 409994629 | 552 | heat shock 90/70 organizing protein [Fra | 0.945 | 0.976 | 0.636 | 0.0 | |
| 322786074 | 538 | hypothetical protein SINV_09553 [Solenop | 0.935 | 0.990 | 0.637 | 0.0 | |
| 156552012 | 549 | PREDICTED: stress-induced-phosphoprotein | 0.945 | 0.981 | 0.638 | 0.0 | |
| 350403286 | 539 | PREDICTED: stress-induced-phosphoprotein | 0.933 | 0.987 | 0.614 | 0.0 | |
| 340728376 | 539 | PREDICTED: hypothetical protein LOC10063 | 0.933 | 0.987 | 0.612 | 0.0 | |
| 332025474 | 512 | Stress-induced-phosphoprotein 1 [Acromyr | 0.891 | 0.992 | 0.638 | 0.0 | |
| 242014218 | 541 | Stress-induced-phosphoprotein, putative | 0.928 | 0.977 | 0.603 | 0.0 | |
| 357617437 | 540 | Hsc70/Hsp90-organizing protein HOP [Dana | 0.933 | 0.985 | 0.614 | 0.0 | |
| 112983280 | 541 | Hsc70/Hsp90-organizing protein HOP [Bomb | 0.926 | 0.975 | 0.607 | 0.0 |
| >gi|193636512|ref|XP_001950745.1| PREDICTED: stress-induced-phosphoprotein 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/551 (64%), Positives = 448/551 (81%), Gaps = 21/551 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LKDKGNAAL N+ +AIE Y++AI+LD NH+LFSNRSAAFAK+G Y+ ALEDAEKT+S
Sbjct: 5 LKDKGNAALAIGNYEQAIEHYTKAIELDPNNHVLFSNRSAAFAKQGKYQNALEDAEKTVS 64
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
LKPDWPKGYSRKG+ALS+LGR ++ Y +GLK DP N+Q+ + +++V+ + +
Sbjct: 65 LKPDWPKGYSRKGTALSFLGRKDDAAKAYGDGLKFDPTNQQLLDGLREVKQSQPSFGGN- 123
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSV 193
N+F + F++L DPRTK ++D ++ ++ E QKDP + ++DPR+ LSV
Sbjct: 124 ----NMFPTES-FLKLAQDPRTKDLINDQQFMSLLMECQKDPQKLIMNMQDPRISAALSV 178
Query: 194 LLGVNMSSTMGDGDAEEMDVDPQPPSP---KKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250
++G+N+ MG+ D +MD +P PP P K+ P+PPP P + ED++LT+EQ+ AKKE
Sbjct: 179 MMGINL---MGEDD--KMDTEPSPPPPPKQKREPTPPP---PEKSEDESLTEEQKEAKKE 230
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE- 309
K+LGNE YK+KNFE AL HYNKA+E +PT++TF NN+AAVYFE+KEY +CI+Q + +E
Sbjct: 231 KDLGNEQYKQKNFEAALVHYNKAIELEPTNMTFYNNVAAVYFEQKEYKKCIDQCEKAVEV 290
Query: 310 ---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
NRADFKLIAKA RIGN YKK+ED+K+AK YF+KSMSEHRTPE+RT+ISE+EKKIKE
Sbjct: 291 GRENRADFKLIAKAFSRIGNAYKKLEDYKSAKTYFQKSMSEHRTPEVRTIISELEKKIKE 350
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+++KAY+DPVKAEEAKE+GNE F G++ADAVK Y+EAI RNPD+PKYYSNRAACYTKLA
Sbjct: 351 QDRKAYVDPVKAEEAKEKGNEFFNKGQFADAVKFYSEAIMRNPDEPKYYSNRAACYTKLA 410
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
AFDLGLKDCE C++LDPKFLKGWIRKGKILQGMQQ SKA+ AY+KALE+D+SN EA+EGY
Sbjct: 411 AFDLGLKDCEKCVELDPKFLKGWIRKGKILQGMQQSSKALTAYQKALEIDSSNTEALEGY 470
Query: 487 RQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKI 546
R CSIA +S+PEE+RKRAM DPEVQ I+RDPAMRLILEQMQNDP+ALSDHLKNP+IASKI
Sbjct: 471 RSCSIAANSDPEEMRKRAMADPEVQDIIRDPAMRLILEQMQNDPKALSDHLKNPDIASKI 530
Query: 547 QKLVNSGLIVL 557
QKL+ SGLI +
Sbjct: 531 QKLIESGLIAI 541
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|409994629|gb|AFV50602.1| heat shock 90/70 organizing protein [Frankliniella occidentalis] gi|442769471|gb|AGC70809.1| heat shock 90/70 organizing protein [Frankliniella occidentalis] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/558 (63%), Positives = 438/558 (78%), Gaps = 19/558 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGNAALQ N+ EAI+ YS+AI LD TNH+LFSNRSAA+AK+ +E A DAE
Sbjct: 3 QVNALKEKGNAALQQGNYTEAIKFYSDAIALDPTNHVLFSNRSAAYAKDEQFELAYADAE 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT++LKPDW KGYSRKGSAL+YLGR E+I YEEGL++DP N Q+ E +K+V+
Sbjct: 63 KTVTLKPDWGKGYSRKGSALAYLGRTDEAIEAYEEGLRIDPTNAQLAEGLKEVKA----- 117
Query: 130 MNRGDPF------ANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLK 183
+ PF A+LF P++FV+L+ +P+T+ FL DP Y++++ ++ DP+ +
Sbjct: 118 --KNPPFPGAGLNADLFRSPDLFVKLRNNPQTRAFLDDPEYLKIVTKLHTDPTAKLDRFD 175
Query: 184 DPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243
DPR++TT+ VLLG+N + GDGD MD P P P P +K + L+
Sbjct: 176 DPRILTTVCVLLGLNFT-MAGDGDIP-MDTSEPPSQPTPRPKEPEKRKEPSEDLSGLSQS 233
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
Q A+KEKE GN+AYKKK+FE ALAHYNKAVE D +DIT+ NNIAAVYFE+KEY +CIEQ
Sbjct: 234 QLLARKEKEKGNDAYKKKDFETALAHYNKAVELDSSDITYLNNIAAVYFEQKEYQKCIEQ 293
Query: 304 YIQKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ IE NRADFKLIAKA RIGN YKK+E++ AKVY+EKSMSEHRTPEIR+L+S+
Sbjct: 294 CEKAIEIGRENRADFKLIAKAFTRIGNAYKKLEEYSTAKVYYEKSMSEHRTPEIRSLLSD 353
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
+EKKIKE+E KAYIDP KAEEAKE+GNELFK G YA+A+K Y++AI RNP+D KYYSNRA
Sbjct: 354 IEKKIKEKEAKAYIDPEKAEEAKEKGNELFKKGDYAEAIKYYSDAIKRNPEDSKYYSNRA 413
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
ACYTKLAAFDLGLKDCE CL+LDPKF+KGWIRKGKILQGMQQQ KAI AY+KALELD N
Sbjct: 414 ACYTKLAAFDLGLKDCEKCLELDPKFIKGWIRKGKILQGMQQQGKAISAYQKALELDPVN 473
Query: 480 AEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKN 539
EA+EGYR CS+AV+SNP+EVRKRAM DPE+Q ILRDPAMRLIL+QMQNDP+AL+DHLKN
Sbjct: 474 TEAIEGYRSCSVAVNSNPDEVRKRAMADPEIQAILRDPAMRLILQQMQNDPKALNDHLKN 533
Query: 540 PEIASKIQKLVNSGLIVL 557
P+IA+KIQKL+ SGLI +
Sbjct: 534 PDIAAKIQKLLESGLIAI 551
|
Source: Frankliniella occidentalis Species: Frankliniella occidentalis Genus: Frankliniella Family: Thripidae Order: Thysanoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322786074|gb|EFZ12685.1| hypothetical protein SINV_09553 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/551 (63%), Positives = 436/551 (79%), Gaps = 18/551 (3%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
V+ LK+KGNAALQ N+ EAI+ Y++AI LDG+NH+L+SNRSAA+AK Y++ALEDAEK
Sbjct: 1 VATLKEKGNAALQTGNYDEAIKCYTDAIALDGSNHVLYSNRSAAYAKSEKYQQALEDAEK 60
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
T+SLKPDW KGYSRKGSAL+YLGRY ESI YE+GL+LDP+N Q++ + +VR Q
Sbjct: 61 TVSLKPDWGKGYSRKGSALAYLGRYDESIRAYEKGLQLDPSNSQLRSGLAEVRAQ----- 115
Query: 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
R N F+ P+IFV+L DPRTK +LSDP Y+++++E++ +P + TKL+D R++TT
Sbjct: 116 -RTAASTNPFNSPDIFVKLANDPRTKGYLSDPEYIKLLQELRNNPQSLGTKLQDTRVLTT 174
Query: 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250
LSVLLG++ +P + P P P KP + E+ NL E+R A +E
Sbjct: 175 LSVLLGMSAEMEEAMETEPM--------NPPEPPKPKPEPKPQKKEEDNLPPEKRKALEE 226
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI-- 308
K+LGN+AYKKK FE+AL HYNKAVE D T+I + NIAAVYFE+KEY++CI Q + I
Sbjct: 227 KKLGNDAYKKKCFEDALEHYNKAVELDSTEIVYLLNIAAVYFEQKEYEKCIAQCEKAIDV 286
Query: 309 --ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
ENRADFKLIAKA RIG+ YKKME+WK AKVY+EKSMSEHRTPEI+TL+S+++K IKE
Sbjct: 287 GRENRADFKLIAKAFTRIGHAYKKMENWKQAKVYYEKSMSEHRTPEIKTLLSDIDKIIKE 346
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
EE+KAYIDPVKAEE KE GN+ +K+G Y A+K Y+EAI RNPDDPKYYSNRAACYTKLA
Sbjct: 347 EERKAYIDPVKAEEEKELGNQKYKDGDYPAAIKHYSEAIRRNPDDPKYYSNRAACYTKLA 406
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
AFDLGLKDCE ++LDPKF+KGWIRKGKILQ MQQQ KA+ AY+KALELD N+EA+EGY
Sbjct: 407 AFDLGLKDCEKVVELDPKFIKGWIRKGKILQAMQQQGKALTAYQKALELDPQNSEALEGY 466
Query: 487 RQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKI 546
R C+++ SSNPEEVR+RAM DPEVQ ILRDPAMRLILEQMQ+DPRAL DHLKNP+IA+K+
Sbjct: 467 RSCAMSASSNPEEVRRRAMADPEVQSILRDPAMRLILEQMQSDPRALQDHLKNPDIAAKL 526
Query: 547 QKLVNSGLIVL 557
QKL+ SGLI +
Sbjct: 527 QKLLESGLIAI 537
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156552012|ref|XP_001603429.1| PREDICTED: stress-induced-phosphoprotein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/553 (63%), Positives = 434/553 (78%), Gaps = 14/553 (2%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
VS+LKD GN L N +AI+ Y++AI++D NH+L+SNRSAA+AK G Y+ AL+DAEK
Sbjct: 4 VSMLKDLGNKLLAENKLDDAIDIYTQAIEIDSKNHVLYSNRSAAYAKAGKYDLALQDAEK 63
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE--MN 128
T+SLKPDW KGYSRKGSAL+YLGRY +SI TY +GL LDP NEQ++ +++V+ Q+ +
Sbjct: 64 TVSLKPDWSKGYSRKGSALAYLGRYDDSIETYSKGLLLDPRNEQLQSGLEEVKAQKNSQS 123
Query: 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMM 188
N N F ++ +L+ DPRTK +L DP Y++M+ + + +P+ +++ L D +++
Sbjct: 124 QFNSQGALRNPFVGADVMTKLRNDPRTKAYLDDPEYIKMLDKFRTNPTSLSSHLYDTKVI 183
Query: 189 TTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248
TTL VLLG N + MDVDP P +K KP E++NL+ E+R A
Sbjct: 184 TTLGVLLGFNETEM-------NMDVDP-PKYEEKPQKKAEEPKPKPKEEENLSAEKRQAL 235
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+EK LGN AYKKK+FEEAL HYNKAVE DPTDIT+ NIAAVYFE+KEY++CI Q + I
Sbjct: 236 EEKNLGNAAYKKKDFEEALKHYNKAVEIDPTDITYYLNIAAVYFEQKEYEKCIAQCEKAI 295
Query: 309 ----ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
ENRADFKLIAKA RIG+ +KKM +WK AKVY+EKSMSEHRTPEI+TL+S++EKKI
Sbjct: 296 DIGRENRADFKLIAKAFTRIGHSHKKMNNWKQAKVYYEKSMSEHRTPEIKTLLSDIEKKI 355
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
KEEE+KAYIDPVKAEE KE GNE FK G YA AVK YTEAI RNPDDPKYYSNRAACYTK
Sbjct: 356 KEEERKAYIDPVKAEEEKELGNEKFKEGDYAAAVKHYTEAILRNPDDPKYYSNRAACYTK 415
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
LAAFDLGLKDCE C+++DPKF+KGWIRKGKILQGMQQQ KAI AY+KAL+LD +NAEA++
Sbjct: 416 LAAFDLGLKDCEKCVEIDPKFIKGWIRKGKILQGMQQQGKAITAYQKALDLDPTNAEALD 475
Query: 485 GYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIAS 544
GYR CS+AVSSNPEEVRKRAM DPEVQ ILRDPAMRLILEQMQNDP+AL DHLKNP+IA+
Sbjct: 476 GYRSCSVAVSSNPEEVRKRAMADPEVQSILRDPAMRLILEQMQNDPKALQDHLKNPDIAA 535
Query: 545 KIQKLVNSGLIVL 557
K+QKL+ SGL+ +
Sbjct: 536 KLQKLLESGLVAI 548
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350403286|ref|XP_003486756.1| PREDICTED: stress-induced-phosphoprotein 1-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/552 (61%), Positives = 429/552 (77%), Gaps = 20/552 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V +LK KGN+ALQ + EAI+ Y+EAI LD NH+L+SNRSAA+AK G Y++ALEDAE
Sbjct: 3 QVYVLKQKGNSALQEGRYEEAIKHYTEAIGLDENNHVLYSNRSAAYAKAGKYKQALEDAE 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+SLKPDW KGYSR GSAL+YLG+ SI YE GL+ +P+N Q++ + +V+ Q +
Sbjct: 63 KTVSLKPDWGKGYSRMGSALAYLGKLNASIKAYETGLQHEPDNAQLQSGLAEVKAQRLMT 122
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
+N F+ P++FV+L DPRTK FL DP Y++++ ++ + L D R++T
Sbjct: 123 -------SNPFNRPDLFVKLANDPRTKGFLLDPEYLKILDTLRNNSESAAEMLTDKRVLT 175
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVL+ ++ + +++ +PP PK+ SP P KK E+++ Q+ A++
Sbjct: 176 TLSVLMNMDTDMEIETNSSQQ----SEPPKPKQE-SPKPQKK----EEEDCNTPQKLAQR 226
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EK+LGN+AYK+K FE AL HYNKAVE DPT+I + NIAAVYFE+KEYD+CI Q + IE
Sbjct: 227 EKQLGNDAYKQKKFEPALQHYNKAVELDPTEIIYLLNIAAVYFEQKEYDKCIAQCEKAIE 286
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NRADFKLIAKA RIG+ YKKME+WK AKVY+EKSMSEHRTPEI+TL+S+++K IK
Sbjct: 287 VGRENRADFKLIAKAFTRIGHAYKKMENWKQAKVYYEKSMSEHRTPEIKTLLSDIDKIIK 346
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
EEE+KAYIDPVKAEE KE GNE +K G Y A+K Y+EAI RNPDDPKYYSNRAACYTKL
Sbjct: 347 EEERKAYIDPVKAEEEKEFGNEKYKEGDYPTAIKHYSEAIKRNPDDPKYYSNRAACYTKL 406
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
AAFDLGLKDCE C+++DPKF+KGWIRKGKILQGMQQQ KA+ AY+KALELD SN+EA+EG
Sbjct: 407 AAFDLGLKDCEKCVEIDPKFIKGWIRKGKILQGMQQQGKALTAYQKALELDPSNSEALEG 466
Query: 486 YRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASK 545
YR C+++VSSNPEEVRKRAM DPEVQ ILRDPAMRLILEQMQ+DPRAL DHLKN ++A+K
Sbjct: 467 YRSCAVSVSSNPEEVRKRAMADPEVQSILRDPAMRLILEQMQSDPRALQDHLKNKDVAAK 526
Query: 546 IQKLVNSGLIVL 557
+QKL+ SGLI +
Sbjct: 527 LQKLLESGLIAI 538
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340728376|ref|XP_003402501.1| PREDICTED: hypothetical protein LOC100631059 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/552 (61%), Positives = 429/552 (77%), Gaps = 20/552 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V +LK KGN+ALQ + EAI+ Y+EAI LD NH+L+SNRSAA+AK G Y++ALEDAE
Sbjct: 3 QVYVLKQKGNSALQEGRYEEAIKHYTEAIGLDENNHVLYSNRSAAYAKAGKYKQALEDAE 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+SLKPDW KGYSR GSAL+YLG+ SI YE GL+ +P+N Q++ + +V+ Q +
Sbjct: 63 KTVSLKPDWGKGYSRMGSALAYLGKLNASIKAYETGLQHEPDNAQLQSGLAEVKAQRLMT 122
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
+N F+ P++FV+L DPRTK FL DP Y++++ ++ + L D R++T
Sbjct: 123 -------SNPFNRPDLFVKLANDPRTKGFLLDPEYLKLLDTLRNNSEAAAEMLTDKRVLT 175
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249
TLSVL+ ++ + +E+ +PP PK+ +P P KK E+++ Q+ A++
Sbjct: 176 TLSVLMNMDTDMEVETNSSEQ----SEPPKPKQE-TPKPQKK----EEEDCNTPQKLAQR 226
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EK+LGN+AYK+K FE AL HYNKAVE DPT+I + NIAAVYFE+KEYD+CI Q + IE
Sbjct: 227 EKQLGNDAYKQKKFEPALQHYNKAVELDPTEIIYLLNIAAVYFEQKEYDKCIAQCEKAIE 286
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
NRADFKLIAKA RIG+ YKKME+WK AKVY+EKSMSEHRTPEI+TL+S+++K IK
Sbjct: 287 IGRENRADFKLIAKAFTRIGHAYKKMENWKQAKVYYEKSMSEHRTPEIKTLLSDIDKIIK 346
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
EEE+KAYIDPVKAEE KE GN+ +K G Y A+K Y+EAI RNPDDPKYYSNRAACYTKL
Sbjct: 347 EEERKAYIDPVKAEEEKELGNQKYKEGDYPTAIKHYSEAIKRNPDDPKYYSNRAACYTKL 406
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
AAFDLGLKDCE C+++DPKF+KGWIRKGKILQGMQQQ KA+ AY+KALELD SN+EA+EG
Sbjct: 407 AAFDLGLKDCEKCVEIDPKFIKGWIRKGKILQGMQQQGKALTAYQKALELDPSNSEALEG 466
Query: 486 YRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASK 545
YR C+++VSSNPEEVRKRAM DPEVQ ILRDPAMRLILEQMQ+DPRAL DHLKN ++A+K
Sbjct: 467 YRSCAVSVSSNPEEVRKRAMADPEVQSILRDPAMRLILEQMQSDPRALQDHLKNKDVAAK 526
Query: 546 IQKLVNSGLIVL 557
+QKL+ SGLI +
Sbjct: 527 LQKLLESGLIAI 538
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332025474|gb|EGI65638.1| Stress-induced-phosphoprotein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/526 (63%), Positives = 415/526 (78%), Gaps = 18/526 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK+KGNAALQ N+ EAI Y++AI LDG NH+L+SNRSAA+AK Y++ALEDAEKT+S
Sbjct: 1 LKEKGNAALQTGNYDEAIRCYTDAIILDGNNHVLYSNRSAAYAKSEKYQQALEDAEKTVS 60
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
LKPDW KGYSRKGSAL+YLGRY ESI YE+GL+LDPNN Q++ ++ +VR Q +
Sbjct: 61 LKPDWGKGYSRKGSALAYLGRYDESIRAYEKGLQLDPNNPQLRSSLAEVRAQ------KT 114
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSV 193
N F+ P+IF++L DPRTK +LSDP Y+++++E++ +P ++ L+D R++TTLSV
Sbjct: 115 AAVTNPFNSPDIFLKLASDPRTKGYLSDPEYMKLLQELRTNPQSLSINLQDTRVLTTLSV 174
Query: 194 LLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKEL 253
LLG MS+ M E M+ +P S P P P + E + NL E+R A +EK+L
Sbjct: 175 LLG--MSADM----EESMETEPMNSSEPPKPKPEPKPQKKEED--NLPPEKRKALEEKKL 226
Query: 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE---- 309
GNEAYKKK+FEEAL HYNKAVE DPT+I + NIAAVYFE+K Y +CI Q + IE
Sbjct: 227 GNEAYKKKSFEEALEHYNKAVELDPTEIIYLLNIAAVYFEQKNYQKCIAQCEKAIEIGRE 286
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369
NRADFKLIAKA RIG+ YKKME+WK AKVY+EKSMSEHRTPEI+TL+S+++K IKEEE+
Sbjct: 287 NRADFKLIAKAFTRIGHAYKKMENWKQAKVYYEKSMSEHRTPEIKTLLSDIDKIIKEEER 346
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
KAYIDP+KAEE KE GN+ +K+G Y A+K Y+EAI RNPDDPKYYSNRAACYTKLAAFD
Sbjct: 347 KAYIDPIKAEEEKELGNQKYKDGDYPAAIKHYSEAIRRNPDDPKYYSNRAACYTKLAAFD 406
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
LGLKDCE ++LDPKF+KGWIRKGKILQ MQQQ KA+ AY+KALELD N+EA+EGYR C
Sbjct: 407 LGLKDCEKVVELDPKFIKGWIRKGKILQAMQQQGKALSAYQKALELDPQNSEALEGYRSC 466
Query: 490 SIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSD 535
+++ SSNPEEVRKRAM DPE+Q ILRDPAMRLILEQMQ+DPRAL +
Sbjct: 467 AVSASSNPEEVRKRAMADPEIQSILRDPAMRLILEQMQSDPRALQE 512
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014218|ref|XP_002427788.1| Stress-induced-phosphoprotein, putative [Pediculus humanus corporis] gi|212512257|gb|EEB15050.1| Stress-induced-phosphoprotein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/557 (60%), Positives = 417/557 (74%), Gaps = 28/557 (5%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V +LKDKGNAAL ANN EAI+ Y+EAI LD NH+L+SNRSAA+AK Y+ AL DA
Sbjct: 3 QVQILKDKGNAALSANNSEEAIKWYTEAIALDPNNHVLYSNRSAAYAKSHKYDLALLDAN 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KTI LKPDW KGYSRKGSAL++LGR++ESI YEEGLK +P+N Q+K Q +N+
Sbjct: 63 KTIELKPDWSKGYSRKGSALAFLGRHRESICAYEEGLKHEPDNIQLK--------QGLNE 114
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
+ + + + +F QL+ + TK ++ DP ++ +++ DP +PR+
Sbjct: 115 AHIQLAYESRLAIAELFKQLRSNQNTKNYVDDPEFLLFLEQYVDDPVKARANASNPRLQN 174
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP-----EDKNLTDEQ 244
L + N+ E MD+DP P K P + K AEP ED NL+ E+
Sbjct: 175 FLRAICDPNILE-------EPMDLDPPPQCTK----PNNSSKTAEPTTKIDEDSNLSPEK 223
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
R A KEK LGNEAYKKK+FE AL HY +AVE DPT+IT+ NN+AAVYFE KEY++CI++
Sbjct: 224 REAIKEKMLGNEAYKKKDFETALKHYFRAVELDPTEITYYNNVAAVYFELKEYEKCIKEC 283
Query: 305 IQKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
+ IE NRADFKLIAKA +RIGN YKK+ D + AK+Y+EKSMSE RTPEIRTL+S++
Sbjct: 284 EKGIEIGRENRADFKLIAKAFKRIGNSYKKLNDVRKAKIYYEKSMSEFRTPEIRTLLSDV 343
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
EK IKEEE+KAYIDPVKAEE KE GN+LFK G YA A+K YTEAI RNPDD KYYSNRAA
Sbjct: 344 EKIIKEEERKAYIDPVKAEEEKEEGNKLFKKGDYAGAIKHYTEAIKRNPDDVKYYSNRAA 403
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
CYTKLAAFDLGLKDC+ CL+LDP F+KGW+RKGKILQGMQQ KA++AY+KAL+LD +NA
Sbjct: 404 CYTKLAAFDLGLKDCKMCLELDPTFIKGWVRKGKILQGMQQYGKAVEAYQKALDLDPNNA 463
Query: 481 EAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNP 540
EA+EGYR CS+A S+PEEVRKRA+ DPEV++IL DPAMRLIL+QMQNDP+AL+DHLKNP
Sbjct: 464 EALEGYRSCSVAFHSDPEEVRKRALADPEVRKILFDPAMRLILDQMQNDPKALNDHLKNP 523
Query: 541 EIASKIQKLVNSGLIVL 557
EIA+KIQKL+ SGLI +
Sbjct: 524 EIAAKIQKLLESGLIAI 540
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357617437|gb|EHJ70789.1| Hsc70/Hsp90-organizing protein HOP [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/553 (61%), Positives = 424/553 (76%), Gaps = 21/553 (3%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGNAAL + + EA++ Y+ AI+LD NH+L+SNRSAA AK GNY +ALEDA
Sbjct: 3 QVNHLKEKGNAALSSGQYAEAVKLYTSAIELDPKNHVLYSNRSAAHAKAGNYAEALEDAN 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+S+ P W KGYSRKGSAL+YLGR++E+I YE+GL+LDP+N+Q+ + +V+ Q
Sbjct: 63 KTVSINPTWSKGYSRKGSALAYLGRHEEAIQAYEKGLQLDPSNQQLASGLAEVKKQAEE- 121
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ-KDPSLMTTKLKDPRMM 188
A L S I +L+ +P+T+ +L+DP YVQ++K DP+ + + R++
Sbjct: 122 -------AELVSQTWI-EKLRANPQTREWLNDPEYVQLVKNFNPSDPNSLNWPTQSERVL 173
Query: 189 TTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248
T++VLLG+N M MDVDP P S K S P ++P +P+ +L + +R A
Sbjct: 174 PTIAVLLGLNPEKGM------PMDVDP-PASEPKPKSAPKKEEPPKPKYDDLPENRRLAL 226
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+EK+LGNE YKKK+F+ A+ HYNKA+E PTDITF N+AAV+FE+KEY++CI++ + I
Sbjct: 227 QEKDLGNEYYKKKDFDNAIQHYNKAIEHYPTDITFYTNLAAVFFEQKEYEKCIKECEKAI 286
Query: 309 E----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
E NRADFKLIAKA RIGN YKKME WK AK YFEKSMSEHRTPEI+TL+SE+EKKI
Sbjct: 287 EIGRENRADFKLIAKAFTRIGNAYKKMEQWKLAKTYFEKSMSEHRTPEIKTLLSEVEKKI 346
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
EEEKKAY+DPVKAE+ KE GNE FK G Y+ A+K Y+EAI RNPDDPK YSNRAACYTK
Sbjct: 347 VEEEKKAYVDPVKAEQEKELGNEFFKQGDYSTAMKHYSEAIKRNPDDPKLYSNRAACYTK 406
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
LAAFDLGLKDCE C KLDPKF+KGWIRKGKILQGMQQ SKA+ AY+KALELD SN EA+E
Sbjct: 407 LAAFDLGLKDCEQCCKLDPKFIKGWIRKGKILQGMQQASKALTAYQKALELDPSNVEALE 466
Query: 485 GYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIAS 544
GYR CS + SNPEEVRKRAM DPEVQQILRDPAMR ILEQMQ+DP+AL DHLKNP++A+
Sbjct: 467 GYRACSTQLHSNPEEVRKRAMADPEVQQILRDPAMRCILEQMQHDPQALQDHLKNPDVAA 526
Query: 545 KIQKLVNSGLIVL 557
KIQKL+ SGLI +
Sbjct: 527 KIQKLLESGLIAI 539
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|112983280|ref|NP_001036957.1| Hsc70/Hsp90-organizing protein HOP [Bombyx mori] gi|60592739|dbj|BAD90844.1| Hsc70/Hsp90-organizing protein HOP [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/556 (60%), Positives = 410/556 (73%), Gaps = 28/556 (5%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
V LK KGN AL NF EAI+ Y+EAI LD TNH+L+SNRSAA AK NYE ALEDAEK
Sbjct: 4 VEQLKKKGNDALVNQNFDEAIKCYTEAIALDPTNHVLYSNRSAAHAKAENYEAALEDAEK 63
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
T+SL P+W KGYSRKGS L+YL RY+E+I Y GL+L+P N+Q+ + ++DV
Sbjct: 64 TVSLHPNWSKGYSRKGSVLAYLSRYEEAIEAYRTGLRLEPTNQQLAQGLRDV-------- 115
Query: 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE--IQKDPSLMTTKLKDPRMM 188
R +NL ++ ++L +PRT+ ++ DP YV I + ++ + ++D R+
Sbjct: 116 ERAMKESNLEAER--LIRLYKNPRTREWMRDPEYVTKIAKPLVKNTYDIRDLNMEDERVA 173
Query: 189 TTLSVLLGVNMSSTMGDGDAEE-MDVDPQPPSPKKAPSPPPAKKPAEPEDK--NLTDEQR 245
T++ L D DAE MDVDP P+P+K PS P +K P+DK L + ++
Sbjct: 174 ATITALW-------QADLDAETAMDVDP--PAPEKTPSTAPKQKEEPPKDKYEGLPENRK 224
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
A +K+LGN+ YKKK F+ A+ HY KA+EFDPTDITF N+AAV+FE+KEY++CI++
Sbjct: 225 QALIQKDLGNDCYKKKEFDNAITHYEKAIEFDPTDITFYTNMAAVFFEQKEYEKCIKECE 284
Query: 306 QKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361
+ IE NRADFKLIAKA RIGN YKKME WK AK YFEKSMSEHRTP I+TL+ E+E
Sbjct: 285 KAIEIGRENRADFKLIAKAFTRIGNAYKKMEQWKLAKTYFEKSMSEHRTPAIKTLLGEVE 344
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
++I EEE+KAYIDPVKAE+ KE GNE FK G Y+ AVK YTEAI RNPDD K YSNRAAC
Sbjct: 345 RRIVEEERKAYIDPVKAEQEKELGNEYFKKGDYSTAVKHYTEAIKRNPDDSKLYSNRAAC 404
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
YTKLAAFDLGLKDCE C KLDPKF+KGWIRKGKILQGMQQ SKA+ AY+KALELD SNAE
Sbjct: 405 YTKLAAFDLGLKDCEQCCKLDPKFIKGWIRKGKILQGMQQPSKALTAYQKALELDPSNAE 464
Query: 482 AVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPE 541
A+EGYR CS ++SNPEEVRKRAM DPEVQQILRDPAMR ILEQMQ DP AL DHLKNPE
Sbjct: 465 ALEGYRSCSTQLTSNPEEVRKRAMSDPEVQQILRDPAMRCILEQMQQDPHALQDHLKNPE 524
Query: 542 IASKIQKLVNSGLIVL 557
IA+KI + + SGLI L
Sbjct: 525 IAAKIAETLESGLIAL 540
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | ||||||
| UNIPROTKB|Q3ZBZ8 | 543 | STIP1 "Stress-induced-phosphop | 0.935 | 0.981 | 0.506 | 8.9e-141 | |
| UNIPROTKB|P31948 | 543 | STIP1 "Stress-induced-phosphop | 0.935 | 0.981 | 0.506 | 1.1e-140 | |
| RGD|621599 | 543 | Stip1 "stress-induced phosphop | 0.935 | 0.981 | 0.509 | 1.1e-140 | |
| MGI|MGI:109130 | 543 | Stip1 "stress-induced phosphop | 0.935 | 0.981 | 0.508 | 3e-140 | |
| ZFIN|ZDB-GENE-041121-17 | 542 | stip1 "stress-induced-phosphop | 0.933 | 0.981 | 0.497 | 5.1e-138 | |
| FB|FBgn0024352 | 490 | Hop "Hsp70/Hsp90 organizing pr | 0.8 | 0.930 | 0.517 | 2.7e-116 | |
| TAIR|locus:2139109 | 558 | Hop3 "AT4G12400" [Arabidopsis | 0.935 | 0.955 | 0.410 | 9.7e-112 | |
| TAIR|locus:2026197 | 571 | Hop2 "Hop2" [Arabidopsis thali | 0.949 | 0.947 | 0.404 | 2e-111 | |
| POMBASE|SPCC645.14c | 591 | sti1 "chaperone activator Sti1 | 0.549 | 0.529 | 0.433 | 5.1e-106 | |
| TAIR|locus:2034620 | 572 | Hop1 "Hop1" [Arabidopsis thali | 0.922 | 0.919 | 0.387 | 2.8e-98 |
| UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 281/555 (50%), Positives = 382/555 (68%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRTK L+DP+Y ++I++++ PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNMPNLYQKLESDPRTKTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
TLSVLLGV++ S + EE+ P +++L + ++ A +
Sbjct: 178 TLSVLLGVDLGSM---DEEEEVATPPPPPPPKKETKPEPM-------EEDLPENKKQALR 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGNEAYKKK+F+ AL HY+KA + DPT++T+ N AAVYFE+ +Y QC E + IE
Sbjct: 228 EKELGNEAYKKKDFDTALKHYDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXX 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 XXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD++ EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADG 467
Query: 486 YRQCSIAVSS---NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A + +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCVMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
|
| UNIPROTKB|P31948 STIP1 "Stress-induced-phosphoprotein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 281/555 (50%), Positives = 382/555 (68%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I++++ PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
TLSVLLGV++ S + EE+ P +++L + ++ A K
Sbjct: 178 TLSVLLGVDLGSM---DEEEEIATPPPPPPPKKETKPEPM-------EEDLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXX 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 XXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAVSS---NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A + +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
|
| RGD|621599 Stip1 "stress-induced phosphoprotein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 283/555 (50%), Positives = 383/555 (69%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I+++Q PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNLPNLYQKLENDPRTRTLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
TLSVLLGV++ S D EE P +++L + ++ A K
Sbjct: 178 TLSVLLGVDLGSM----DEEEEAATPPPPPPPKKEAKPEPM------EEDLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F++AL HY+KA E DPT++T+ N AAV+FE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDKALKHYDKAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXX 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEERYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 XXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAVSS---NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A + +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
|
| MGI|MGI:109130 Stip1 "stress-induced phosphoprotein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 282/555 (50%), Positives = 383/555 (69%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL A N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSAGNIDDALQCYSEAIKLDPQNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++ N E
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
R F N F+ PN++ +L+ DPRT+ LSDP+Y ++I+++Q PS + TKL+DPR+MT
Sbjct: 120 AER--KFMNPFNLPNLYQKLENDPRTRSLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
TLSVLLGV++ S D EE P +++L + ++ A K
Sbjct: 178 TLSVLLGVDLGSM----DEEEEAATPPPPPPPKKEPKPEPM------EEDLPENKKQALK 227
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN+AYKKK+F++AL HY++A E DPT++T+ N AAV+FE+ +Y++C E + IE
Sbjct: 228 EKELGNDAYKKKDFDKALKHYDRAKELDPTNMTYITNQAAVHFEKGDYNKCRELCEKAIE 287
Query: 310 ----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXX 365
NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++
Sbjct: 288 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 347
Query: 366 XXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
AYI+P A E K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTKL
Sbjct: 348 EQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKL 407
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +G
Sbjct: 408 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 467
Query: 486 YRQCSIAVSS---NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
Y++C +A + +PE+V++RAM DPEVQQI+ DPAMRLILEQMQ DP+ALS+HLKNP I
Sbjct: 468 YQRCMMAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVI 527
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 528 AQKIQKLMDVGLIAI 542
|
|
| ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
Identities = 276/555 (49%), Positives = 380/555 (68%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+VS LKD+GN AL A N EAI Y+EA+ LD +NH+LFSNRSAA+AK+G+Y+ AL+DA
Sbjct: 3 KVSQLKDQGNKALSAGNLEEAIRCYTEALTLDPSNHVLFSNRSAAYAKKGDYDNALKDAC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
+TI +KPDW KGYSRK +AL +LGR +++ +TY+EGL+ +P+N+Q+KE ++ N E
Sbjct: 63 QTIKIKPDWGKGYSRKAAALEFLGRLEDAKATYQEGLRQEPSNQQLKEGLQ---NMEARL 119
Query: 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMT 189
+ N FS PN++ +L+ D RT+ LSDPSY +++++++ PS + TKL+DPR+MT
Sbjct: 120 AEK--KMMNPFSIPNLYEKLEGDSRTRALLSDPSYRELLEQLRNKPSELGTKLQDPRVMT 177
Query: 190 TLSVLLGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
TLSVLLG+++S D EE P +++L + +R A K
Sbjct: 178 TLSVLLGLDLSGM----DEEEEPTPPPPPKPKETAPPPPK-------EEDLPENKRMALK 226
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI- 308
EKELGN AYKKK+F AL HY +A++ DPT++T+ +N AAVYFE+ ++D+C E + I
Sbjct: 227 EKELGNAAYKKKDFATALKHYEEAIKHDPTNMTYLSNQAAVYFEKGDFDKCRELCEKAID 286
Query: 309 ---ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXX 365
ENR D++ IAKA RIGN Y K E +K A +F KS++EHRTP++
Sbjct: 287 VGRENREDYRQIAKAYARIGNSYFKQEKYKEAVQFFNKSLTEHRTPDVLKKCQEAEKILK 346
Query: 366 XXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
AYI+P A E K +GN+ F+ G Y A+K Y+EAI RNP D K +SNRAACYTKL
Sbjct: 347 EQEKVAYINPDLALEEKNKGNDAFQKGDYPLAMKHYSEAIKRNPYDAKLFSNRAACYTKL 406
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485
F L LKDCE C+ LD F+KG+ RKG L+ M+ SKA+D Y+KALELD+++ EA EG
Sbjct: 407 LEFQLALKDCEECINLDSTFIKGYTRKGAALEAMKDFSKAMDVYQKALELDSNSKEATEG 466
Query: 486 YRQCSIAVS---SNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
++C ++ + +PE+V++RAM DPEVQQI+ DPAMR+ILEQMQ DP+ALSDHLKNP I
Sbjct: 467 LQRCMVSQAMRNDSPEDVKRRAMADPEVQQIMSDPAMRMILEQMQKDPQALSDHLKNPVI 526
Query: 543 ASKIQKLVNSGLIVL 557
A KIQKL++ GLI +
Sbjct: 527 AQKIQKLIDVGLIAI 541
|
|
| FB|FBgn0024352 Hop "Hsp70/Hsp90 organizing protein homolog" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 255/493 (51%), Positives = 316/493 (64%)
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPN 144
KG+ ++ E+++ Y E + LD N + N+ G F D
Sbjct: 10 KGNQALSAEKFDEAVAAYTEAIALDDQNHVLYS------NRSAAFAKAGK-FQEALEDAE 62
Query: 145 IFVQLQLDPR-TKPFLSDPSYVQMIKEIQKDPSLMTTKLK-DP--------RMMTTLSVL 194
+QL+P K + + + + K LK DP RM TT S L
Sbjct: 63 --KTIQLNPTWPKGYSRKGAAAAGLNDFMKAFEAYNEGLKYDPTNAILLQGRMETTASAL 120
Query: 195 LGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXD-----KNLTDEQRS--- 246
S GD MDVDPQ +++T+EQ++
Sbjct: 121 -----SFMQSQGDIP-MDVDPQQARSRRAPSPPPAKPAEPPKPAEPRVEDMTEEQKNKYF 174
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A+KEKELGN AYKKK+FE AL HY+ A+E DPTDITF NNIAAV+FERKEY++CI+Q +
Sbjct: 175 ARKEKELGNAAYKKKDFETALKHYHAAIEHDPTDITFYNNIAAVHFERKEYEECIKQCEK 234
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISXXXX 362
IE +RADFKLIAK+ RIGN Y+K+E++K AKVY+EK+MSEHRTPEI+T +S
Sbjct: 235 GIEVGRESRADFKLIAKSFARIGNTYRKLENYKQAKVYYEKAMSEHRTPEIKTSLSEVEA 294
Query: 363 XXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
AYI+P KAEE KE+GN FK G Y+ AVK YTEAI RNPDDPK YSNRAACY
Sbjct: 295 KIKEEERMAYINPEKAEEEKEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNRAACY 354
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
TKLAAFDLGLKDC+TC+KLD KF+KG+IRKGKILQGMQQQSKA AY+KALELD +NAEA
Sbjct: 355 TKLAAFDLGLKDCDTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAAYQKALELDPNNAEA 414
Query: 483 VEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
+EGYRQCS+ NP+EV K AM DPE+QQIL+DPAMR+ILEQMQ+DP A+ +HL+NP I
Sbjct: 415 IEGYRQCSMNFQRNPQEVLKNAMSDPEIQQILKDPAMRMILEQMQSDPNAVKEHLQNPAI 474
Query: 543 ASKIQKLVNSGLI 555
A KI KL+ SG+I
Sbjct: 475 ADKIMKLLESGII 487
|
|
| TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 229/558 (41%), Positives = 339/558 (60%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K KGNAA + ++ AI ++EAI L TNHIL+SNRSA++A YE+AL DA+KTI L
Sbjct: 6 KSKGNAAFSSGDYATAITHFTEAINLSPTNHILYSNRSASYASLHRYEEALSDAKKTIEL 65
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD 134
KPDW KGYSR G+A L ++ E++ +Y++GL++DP+NE +K + D ++ ++ +
Sbjct: 66 KPDWSKGYSRLGAAFIGLSKFDEAVDSYKKGLEIDPSNEMLKSGLADASRSRVS--SKSN 123
Query: 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVL 194
PF + F ++ +L DP T+ +L +V+ +KEIQ++P+ + +KD R+M L VL
Sbjct: 124 PFVDAFQGKEMWEKLTADPGTRVYLEQDDFVKTMKEIQRNPNNLNLYMKDKRVMKALGVL 183
Query: 195 LGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKKEKELG 254
L V + G+ D E + D + ++ + + A KEK G
Sbjct: 184 LNVKFGGSSGE-DTEMKEADERKEPEPEMEPMELTEE-----ERQKKERKEKALKEKGEG 237
Query: 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN---- 310
N AYKKK+F A+ HY KA+E D DI++ N AAVY E +Y++CIE + +E
Sbjct: 238 NVAYKKKDFGRAVEHYTKAMELDDEDISYLTNRAAVYLEMGKYEECIEDCDKAVERGREL 297
Query: 311 RADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISXXXXXXXX 366
R+DFK+IA+AL R G+ KM +D++ A F+K+++EHR P+ ++
Sbjct: 298 RSDFKMIARALTRKGSALVKMARCSKDFEPAIETFQKALTEHRNPDTLKKLNDAEKVKKE 357
Query: 367 XXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
Y DP AEE +E+GN FK KY +AVK Y+EAI RNP+D + YSNRAACYTKL
Sbjct: 358 LEQQEYFDPTIAEEEREKGNGFFKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAACYTKLG 417
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
A GLKD E C++LDP F KG+ RKG I M++ KA++ Y++ L+ D N E ++G
Sbjct: 418 ALPEGLKDAEKCIELDPSFTKGYSRKGAIQFFMKEYDKAMETYQEGLKHDPKNQEFLDGV 477
Query: 487 RQCSIAVSS------NPEEVRKR---AMGDPEVQQILRDPAMRLILEQMQNDPRALSDHL 537
R+C ++ PEE+++R AM DPEVQ IL DP MR +L Q +P+A +H+
Sbjct: 478 RRCVEQINKASRGDLTPEELKERQAKAMQDPEVQNILSDPVMRQVLVDFQENPKAAQEHM 537
Query: 538 KNPEIASKIQKLVNSGLI 555
KNP + +KIQKLV++G++
Sbjct: 538 KNPMVMNKIQKLVSAGIV 555
|
|
| TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 228/563 (40%), Positives = 337/563 (59%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K KGNAA + +F A+ +++AI L TNH+LFSNRSAA A +Y++AL DA+KT+ L
Sbjct: 6 KAKGNAAFSSGDFNSAVNHFTDAINLTPTNHVLFSNRSAAHASLNHYDEALSDAKKTVEL 65
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR-NQEMNDMNRG 133
KPDW KGYSR G+A L ++ E++ Y +GL++DP+NE +K + D + + + +
Sbjct: 66 KPDWGKGYSRLGAAHLGLNQFDEAVEAYSKGLEIDPSNEGLKSGLADAKASASRSRASAP 125
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSV 193
+PF + F P ++ +L DP T+ L P +V M+KEIQ++PS + L+D R+M L V
Sbjct: 126 NPFGDAFQGPEMWSKLTADPSTRGLLKQPDFVNMMKEIQRNPSNLNLYLQDQRVMQALGV 185
Query: 194 LLGVNMSSTMGDGDAE----EMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRSAKK 249
LL + + + D E EM V + ++ A+K
Sbjct: 186 LLNIQIRTQQAGDDMEIGEEEMAVPSRKEPEVEKKRKPEPEPEPEPEFGEEKQKKLKAQK 245
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
EKELGN AYKKK+FE A+ HY+ A+E D DI++ N AAV+ E +YD+CI+ + +E
Sbjct: 246 EKELGNAAYKKKDFETAIQHYSTAMEIDDEDISYITNRAAVHLEMGKYDECIKDCDKAVE 305
Query: 310 N----RADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISXXX 361
R+D+K++AKAL R G KM +D++ ++K+++EHR PE ++
Sbjct: 306 RGRELRSDYKMVAKALTRKGTALGKMAKVSKDYEPVIQTYQKALTEHRNPETLKRLNEAE 365
Query: 362 XXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
Y DP +E +E+GN+ FK KY DAV+ YTEAI RNP DP+ YSNRAAC
Sbjct: 366 RAKKELEQQEYYDPNIGDEEREKGNDFFKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAAC 425
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
YTKL A GLKD E C++LDP FLKG+ RKG + M++ A++ Y+K LE D +N E
Sbjct: 426 YTKLGAMPEGLKDAEKCIELDPTFLKGYSRKGAVQFFMKEYDNAMETYQKGLEHDPNNQE 485
Query: 482 AVEGYRQCSIAVSS------NPEEVRKR---AMGDPEVQQILRDPAMRLILEQMQNDPRA 532
++G ++C ++ PEE+++R M DPE+Q IL DP MR +L +Q +P A
Sbjct: 486 LLDGVKRCVQQINKANRGDLTPEELKERQAKGMQDPEIQNILTDPVMRQVLSDLQENPAA 545
Query: 533 LSDHLKNPEIASKIQKLVNSGLI 555
H++NP I +KIQKL++SG++
Sbjct: 546 AQKHMQNPMIMNKIQKLISSGIV 568
|
|
| POMBASE|SPCC645.14c sti1 "chaperone activator Sti1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 5.1e-106, Sum P(2) = 5.1e-106
Identities = 143/330 (43%), Positives = 201/330 (60%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
++ A +EK++GNE YKK+NF A+ Y KA + DIT+ NN+AA YFE + D CI+
Sbjct: 262 KKKADQEKQIGNENYKKRNFPVAIEQYKKAWD-TYKDITYLNNLAAAYFEADQLDDCIKT 320
Query: 304 YIQKIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISX 359
IE RADFKLIAKAL R+G Y+K D A Y+++S++EHRTP+I + +
Sbjct: 321 CEDAIEQGRELRADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSLTEHRTPDILSRLKD 380
Query: 360 XXXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
AYIDP KAEE++ +GNELFK+G +A+A+KEYTE R P DP+ + NRA
Sbjct: 381 AEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRA 440
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD--- 476
A Y K+ A ++DC ++LDP F K ++RK + L ++ +K IDA +A E+D
Sbjct: 441 AAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRRE 500
Query: 477 ---ASNAEAVEGY-RQCSIAVSSN-----PEEVRKRAMGDPEVQQILRDPAMRLILEQMQ 527
N +E +C A++S EE R DPEV IL+DPAM+ IL Q +
Sbjct: 501 PNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQAR 560
Query: 528 NDPRALSDHLKNPEIASKIQKLVNSGLIVL 557
+P AL +H+KNP + SKI+KL+ SG+I L
Sbjct: 561 ENPAALMEHMKNPTVKSKIEKLIASGVIRL 590
|
|
| TAIR|locus:2034620 Hop1 "Hop1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 213/549 (38%), Positives = 313/549 (57%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K KGNAA + +F AI ++EAI L TNH+LFSNRSAA A Y +AL DA++TI L
Sbjct: 6 KAKGNAAFSSGDFTTAINHFTEAIALAPTNHVLFSNRSAAHASLHQYAEALSDAKETIKL 65
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD 134
KP WPKGYSR G+A L +++ +++ Y++GL +DP NE +K + D +
Sbjct: 66 KPYWPKGYSRLGAAHLGLNQFELAVTAYKKGLDVDPTNEALKSGLADAEASVARSRAAPN 125
Query: 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVL 194
PF + F P ++ +L DP T+ FL P +V M++EIQK+PS + LKD R+M +L VL
Sbjct: 126 PFGDAFQGPEMWTKLTSDPSTRGFLQQPDFVNMMQEIQKNPSSLNLYLKDQRVMQSLGVL 185
Query: 195 LGVNMSSTMGDGDAEEMDVDPQXXXXXXXXXXXXXXXXXXXXDKNLTDEQRS------AK 248
L V GD E+ + +T+E+ AK
Sbjct: 186 LNVKFRPPPPQGDEAEVPESDMGQSSSNEPEVEKKREPEPEPEPEVTEEKEKKERKEKAK 245
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
KEKELGN AYKKK+FE A+ HY+ A+E D DI++ N AAVY E +Y++CIE + +
Sbjct: 246 KEKELGNAAYKKKDFETAIQHYSTAIEIDDEDISYLTNRAAVYLEMGKYNECIEDCNKAV 305
Query: 309 EN----RADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISXX 360
E R+D+K++A+AL R G KM +D++ A F+K+++EHR P+ ++
Sbjct: 306 ERGRELRSDYKMVARALTRKGTALTKMAKCSKDYEPAIEAFQKALTEHRNPDTLKRLNDA 365
Query: 361 XXXXXXXXXXAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
Y DP +E +E+GN+ FK KY +A+K YTEAI RNP+D K YSNRAA
Sbjct: 366 ERAKKEWEQKQYFDPKLGDEEREKGNDFFKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAA 425
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
YTKL A GLKD E C++LDP F KG+ RK + +++ A++ Y+ LE D SN
Sbjct: 426 SYTKLGAMPEGLKDAEKCIELDPTFSKGYSRKAAVQFFLKEYDNAMETYQAGLEHDPSNQ 485
Query: 481 EAVEGYRQCSIAVS-SNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDP---RALSDH 536
E ++G ++C ++ +N ++ + + + + ++DP ++ IL DP + LSD
Sbjct: 486 ELLDGVKRCVQQINKANRGDLTPEELKERQAKG-MQDPEIQNIL----TDPVMRQVLSDL 540
Query: 537 LKNPEIASK 545
+NP A K
Sbjct: 541 QENPSAAQK 549
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3ZBZ8 | STIP1_BOVIN | No assigned EC number | 0.5243 | 0.9350 | 0.9815 | yes | N/A |
| Q60864 | STIP1_MOUSE | No assigned EC number | 0.5297 | 0.9350 | 0.9815 | yes | N/A |
| P15705 | STI1_YEAST | No assigned EC number | 0.3719 | 0.9473 | 0.9168 | yes | N/A |
| O54981 | STIP1_CRIGR | No assigned EC number | 0.5207 | 0.9350 | 0.9815 | yes | N/A |
| P31948 | STIP1_HUMAN | No assigned EC number | 0.5243 | 0.9350 | 0.9815 | yes | N/A |
| Q9USI5 | STI1_SCHPO | No assigned EC number | 0.4098 | 0.9543 | 0.9204 | yes | N/A |
| Q54DA8 | STIP1_DICDI | No assigned EC number | 0.3774 | 0.9473 | 0.9574 | yes | N/A |
| Q8ILC1 | STI1L_PLAF7 | No assigned EC number | 0.3776 | 0.9438 | 0.9539 | yes | N/A |
| O35814 | STIP1_RAT | No assigned EC number | 0.5261 | 0.9350 | 0.9815 | yes | N/A |
| Q4R8N7 | STIP1_MACFA | No assigned EC number | 0.5261 | 0.9350 | 0.9815 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 570 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-15 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-14 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-11 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 5e-11 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 9e-10 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-08 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 2e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-06 | |
| smart00727 | 41 | smart00727, STI1, Heat shock chaperonin-binding mo | 9e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 7e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 8e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 9e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-04 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 3e-04 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 5e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.002 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.004 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-22
Identities = 42/99 (42%), Positives = 61/99 (61%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
L + GN + ++ EA+E Y +A++LD N + N +AA+ K G YE+ALED EK +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
L PD K Y G A LG+Y+E++ YE+ L+LDPN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-21
Identities = 37/98 (37%), Positives = 55/98 (56%)
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438
E GN +K G Y +A++ Y +A+ +PD+ Y N AA Y KL ++ L+D E
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L+LDP K + G + + +A++AYEKALELD
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-15
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
LGN YK +++EAL +Y KA+E DP + N+AA Y++ +Y++ +E Y + +E
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
D AKA +G Y K+ ++ A +EK++
Sbjct: 64 DPDN---AKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-14
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL-AAFDLGLKDC 435
AE K GN LFK G Y +A++ Y +A+ +PD+ + Y N A Y KL ++ L+D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 436 ETCLKLDP 443
E L+LDP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 23/203 (11%)
Query: 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349
VY++RK Q + + R K K + KK KNA V E
Sbjct: 53 VYYQRKGQQQRESKPKISKKERRKRKQAEKETEG-KTEEKKSTAPKNAPVE---PADELP 108
Query: 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
+ ++ + EEE+K Y A + KE+GN+ ++N + A+K Y++AI P
Sbjct: 109 EIDESSVA-----NLSEEERKKY-----AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP 158
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
D P YYSNRAAC+ L ++ ++D L+LDP + K R+ G+ + + A+
Sbjct: 159 D-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL--- 214
Query: 470 EKALELDASNAEAVEGYRQCSIA 492
LD + + ++G+R A
Sbjct: 215 -----LDLTASCIIDGFRNEQSA 232
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKT 71
LK+ GNA + ++ EAIEAY +A++LD N + N + A+ K G +YE+ALED EK
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64
Query: 72 ISLKP 76
+ L P
Sbjct: 65 LELDP 69
|
Length = 69 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
L+DK A ++F A++ Y++AI LD N L+++R+ A K GN+ +A+ DA K
Sbjct: 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA 62
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121
I L P K Y RKG+A L Y+ + + E+G L P + + + IK+
Sbjct: 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112
|
Length = 356 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 9e-10
Identities = 76/323 (23%), Positives = 138/323 (42%), Gaps = 53/323 (16%)
Query: 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN---LTDEQRS--AKKEKELGNEAYKKK 261
+ E + + +PK AP P + P E ++ + L++E+R A K KE GN+AY+ K
Sbjct: 83 ETEGKTEEKKSTAPKNAPVEPADELP-EIDESSVANLSEEERKKYAAKLKEKGNKAYRNK 141
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
+F +A+ Y+KA+E P D + +N AA + ++++ +E +E D+ +KAL
Sbjct: 142 DFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---SKAL 197
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSM------SEHRTPEI-RTLISEMEKKIKE--EEKKAY 372
R N Y + + +A + S +E + R L E K KE E K
Sbjct: 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN 257
Query: 373 IDPV---------------------KAEEAKERGNELFKNGK----------YADAVKEY 401
+ V E +E GN + G Y +A + +
Sbjct: 258 LPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAF 317
Query: 402 TEAINRNPDDPK--YYSNRAACYTKLAAFDLG-LKDCETCLKLDPKFLKGWIRKGKILQG 458
+A++ K N + L L L D ++LDP+ + +I++ +
Sbjct: 318 EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE 377
Query: 459 MQQQSKAIDAYEKALELDASNAE 481
+ KA + ++KAL+L++ + +
Sbjct: 378 LGDPDKAEEDFDKALKLNSEDPD 400
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 95/484 (19%), Positives = 176/484 (36%), Gaps = 72/484 (14%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK+KGN A + +F +AI+ YS+AI+ + + +SNR+A G++EK +ED +
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALE 188
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYE-EGLKLDPNNEQMKEAIKDVRNQEMNDMNR 132
L PD+ K +R+ +A LG+Y +++ + NEQ +A++ R + ++
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVE--RLLKKFAESK 246
Query: 133 GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLS 192
I +Y+Q + + L + D
Sbjct: 247 AK---------EILETKP--ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295
Query: 193 VLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252
L + S + E A+ + D E+ +
Sbjct: 296 QLGLKSPESKADESYEE------------------AARAFEKALDLGKLGEKEAIALNLR 337
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G K EALA +K++E DP A++ E + D+ E + + ++
Sbjct: 338 -GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK--- 393
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ ++ +Y+ HR ++ + E + K+ +K
Sbjct: 394 -------------------LNSEDPDIYY------HRA-QLHFIKGEFAQAGKDYQKSID 427
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+DP + G +K G A ++ + P+ P Y+ FD +
Sbjct: 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487
Query: 433 KDCETCLKLDPKFLKG-------WIRKGKIL-QGMQQQSKAIDAYEKALELDASNAEAVE 484
+ +T ++L+ + K I K L Q Q +A + EKAL +D AV
Sbjct: 488 EKFDTAIELEKE-TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546
Query: 485 GYRQ 488
Q
Sbjct: 547 TMAQ 550
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-09
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKE-YDQCIEQ 303
+A+ K LGN +K +++EA+ Y KA+E DP + N+A Y + + Y++ +E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 304 Y 304
Sbjct: 61 L 61
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-09
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA 378
+AL +GN Y K+ D+ A Y+EK++ ++ + AY +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKAL-----------------ELDPDNADAYYN---- 39
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438
+K GKY +A+++Y +A+ +PD+ K Y N Y KL ++ L+ E
Sbjct: 40 -----LAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
Query: 439 LKLDPK 444
L+LDP
Sbjct: 95 LELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-08
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
N + K G+Y++ALE EK + L PD Y +A LG+Y+E++ YE+ L+LD
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64
Query: 110 PNN 112
P+N
Sbjct: 65 PDN 67
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-08
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLG-RYKESISTYEEG 105
N A K G+Y++A+E EK + L PD + Y A LG Y+E++ E+
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64
Query: 106 LKLDP 110
L+LDP
Sbjct: 65 LELDP 69
|
Length = 69 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 32/133 (24%), Positives = 66/133 (49%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A++ +++ E F + +A AV YT+AI+ +P++ + Y++RA KL F + D
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497
++LDP K ++RKG +++ A A EK L ++ + ++C ++
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEE 121
Query: 498 EEVRKRAMGDPEV 510
+++ + D
Sbjct: 122 KDLVQPVPSDLPS 134
|
Length = 356 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 87/506 (17%), Positives = 172/506 (33%), Gaps = 69/506 (13%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G A L +F +A E ++A +LD N + + +G+ +A+ D E L P+
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
Query: 78 WPKGYSRKGSALSYL--GRYKESISTYEEGLKLDPNNEQM-----------KEAIKDVRN 124
+ + LSYL G++ ++++ ++ K P+N + + K
Sbjct: 430 LGR--ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487
Query: 125 QEMN-DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLK 183
E + A ++D + IQ+ ++T K
Sbjct: 488 FEKALSIEPDFFPA-------AANLARIDIQEG---------NPDDAIQRFEKVLTIDPK 531
Query: 184 DPRMMTTLSVLLGVNMSSTMGDGDAEE-MDVDPQPPSPKKA------PSPPPAKKPAEPE 236
+ R + L+ L + E+ +++PQ P A K A
Sbjct: 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK--ALAI 589
Query: 237 DKNLTDEQRSAKKEKELGNEAYKK-KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
D + + + A + +A++ + K + P +A Y K
Sbjct: 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
Y + I + +E + D L ++ K+ E K +K +
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA------A 703
Query: 356 LISEMEKKIKEEEK--KAYIDPVKAEEAKERGNE--------LFKNGKYADAVKEYTEAI 405
L E+E + +K A I + + ++ L +G A+AVK +
Sbjct: 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763
Query: 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK-----GWIRKGKILQGMQ 460
+P+D + A Y +D +K +T +K P W L
Sbjct: 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAW------LYLEL 817
Query: 461 QQSKAIDAYEKALELDASNAEAVEGY 486
+ +A++ E+AL+L + ++
Sbjct: 818 KDPRALEYAERALKLAPNIPAILDTL 843
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|128966 smart00727, STI1, Heat shock chaperonin-binding motif | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-06
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 507 DPEVQQILRDPAMRLILEQMQNDPRALSDHLK-NPEIASKI 546
DPE+ L++P ++ +L+ MQ +P L+ L+ NP++ I
Sbjct: 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI 41
|
Length = 41 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
+ A + + EA+E Y +A++LD N + N A+ K G YE+ALE EK
Sbjct: 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
Query: 72 ISLKPD 77
+ L P+
Sbjct: 95 LELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (108), Expect = 2e-05
Identities = 53/263 (20%), Positives = 99/263 (37%), Gaps = 16/263 (6%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP--TDITFQNNIAAVYFERKEYDQ 299
+ + EAL +A+E P +A + ++
Sbjct: 18 LLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEE 77
Query: 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE------- 352
+ ++K +A+AL +G + + ++ A EK+++ P+
Sbjct: 78 -ALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLA 136
Query: 353 --IRTLISEMEKKIKEEEKKAYIDPV---KAEEAKERGNELFKNGKYADAVKEYTEAINR 407
+ + E+ ++ EK +DP AE G L G+Y +A++ +A+
Sbjct: 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196
Query: 408 NPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAI 466
NPD D + N Y KL ++ L+ E L+LDP + +L + + +A+
Sbjct: 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256
Query: 467 DAYEKALELDASNAEAVEGYRQC 489
+A EKALELD
Sbjct: 257 EALEKALELDPDLYNLGLALLLL 279
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 103/507 (20%), Positives = 177/507 (34%), Gaps = 81/507 (15%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80
AL N F EA E + D N + GN E AL K I+L+P+
Sbjct: 169 ALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIA 228
Query: 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK--EAIKDVRNQEMNDMNRGDPFAN 138
+ L G ++E+ + LK PN+ +A+ D + + D R
Sbjct: 229 VLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA-RETLQDA 287
Query: 139 LFSDPNIFVQLQLDPRTKPFLSD--PSYVQMIKEIQKDPS-------LMTTKLKDPRMM- 188
L S P L L ++ L + +Y + + ++ P+ L + +L+ R+
Sbjct: 288 LKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDE 347
Query: 189 --TTLSVLLGVNMSST----------MGDGDAEEM--------DVDPQPPS--PKKAPSP 226
TLS LG++ + GD E+ ++DP+ + + S
Sbjct: 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
Query: 227 PPAKKPAEPEDKNLTDEQRSAKKEKELGN------EAY-KKKNFEEALAHYNKAVEFDPT 279
P+E +L +A+ + ELG +Y + F++ALA K + P
Sbjct: 408 LSQGDPSEAI-ADLET---AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463
Query: 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKMEDWKNAK 338
+ + N + A+Y + + + E + + + F A L RI +D A
Sbjct: 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN-LARIDIQEGNPDD---AI 519
Query: 339 VYFEKSMSEHRT--PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396
FEK ++ I L A GNE +
Sbjct: 520 QRFEKVLTIDPKNLRAILAL---------------------AGLYLRTGNE-------EE 551
Query: 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456
AV +A NP + + A Y L P + W+ G+
Sbjct: 552 AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
Query: 457 QGMQQQSKAIDAYEKALELDASNAEAV 483
+KA+ +++K L L +A A+
Sbjct: 612 LAAGDLNKAVSSFKKLLALQPDSALAL 638
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 61/198 (30%)
Query: 234 EPEDKNLTDEQRSAKKEKEL-------GNEAYKKKNFEEALAH----------------- 269
+P TD +AK +L G+ A KKN E+AL H
Sbjct: 22 DPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK 81
Query: 270 ----------YNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319
Y KA+ P + NN A + ++ ++Q+ + + + + +
Sbjct: 82 LGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSD 140
Query: 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379
L+ +G C K + A+ Y ++++ +DP
Sbjct: 141 TLENLGLCALKAGQFDQAEEYLKRAL--------------------------ELDPQFPP 174
Query: 380 EAKERGNELFKNGKYADA 397
E +K G YA A
Sbjct: 175 ALLELARLHYKAGDYAPA 192
|
Length = 250 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 9/62 (14%), Positives = 15/62 (24%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
+ G Y +A+ A+ R P + + L D
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 443 PK 444
P
Sbjct: 62 PD 63
|
Length = 65 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320
E+A + +A+ +P + NN ++ +Y+Q ++Q+ Q IE+ + A++
Sbjct: 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-PLYPQPARS 137
Query: 321 LQRIGNCYKKMEDWKNAKVYFEKS 344
L+ G C K D+ A+ Y ++
Sbjct: 138 LENAGLCALKAGDFDKAEKYLTRA 161
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 14/232 (6%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
++ A KA+ +A Y + ++ Q +++ K + AL
Sbjct: 71 DYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLAL 130
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRT---LISEMEKKIKEEEK------KA 371
+ G Y + + A+ +E++++ + R+ + ++ E + E A
Sbjct: 131 R--GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
V A K G+ L G A+ Y +AI P++ A + F+
Sbjct: 189 DPGNVDALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
K + LK P K + + A + + AL+ A+
Sbjct: 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 26/209 (12%)
Query: 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIA-AVYFERKEY 297
L A+ LG +EEAL KA+ DP + +A +E +Y
Sbjct: 87 ELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
++ +E Y + +E + +A+AL +G + + ++ A EK++
Sbjct: 147 EEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL------------ 194
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
AE G K GKY +A++ Y +A+ +PD+ + N
Sbjct: 195 -------------KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKFL 446
A +L ++ L+ E L+LDP
Sbjct: 242 LALLLLELGRYEEALEALEKALELDPDLY 270
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFK----LIAKALQRIGNCYKKMEDWKNAKVY 340
NN+A V +YD+ +E + +E + A+AL + Y + D+ A Y
Sbjct: 9 NNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEY 68
Query: 341 FEKSM 345
EK++
Sbjct: 69 LEKAL 73
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTD 280
LGN K ++EAL +Y KA+E +P +
Sbjct: 7 LGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTD 280
LGN K +++EAL +Y KA+E DP +
Sbjct: 5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 19/101 (18%), Positives = 36/101 (35%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
+ + A + EA++ I N + ++A+E +K
Sbjct: 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKA 366
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++L P+ P AL G+ +E+I L DP +
Sbjct: 367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407
|
Length = 484 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
AK ++ EA+ +F A+ Y +A++ DP + + A + + + + +
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIK 365
IE +AKA R G K+E+++ AK EK S LI E ++KI
Sbjct: 62 AIELDPS---LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118
Query: 366 EEEK 369
EEEK
Sbjct: 119 EEEK 122
|
Length = 356 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 5e-04
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD-GTNHILFSNRSAAFAKEGN 60
E L L G + EA+E +A+KL+ + N + K G
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
YE+ALE EK + L PD + L LGRY+E++ E+ L+LDP+ + A+
Sbjct: 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277
Query: 121 DVRNQEMNDMNR 132
+ + + + +
Sbjct: 278 LLLAEALELLEK 289
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 5e-04
Identities = 13/62 (20%), Positives = 23/62 (37%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
AAL+A ++ EA+ A A+ A ++G +A ++
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 76 PD 77
PD
Sbjct: 62 PD 63
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
K G+A LG+Y E++ YE+ L+L+PNN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
A + G+Y++AL E ++ P + G AL GR E+ + L DP++
Sbjct: 6 AALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65
|
Length = 65 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 47 LFSNRSAAFAKEGNYEKALEDAEKTISLK-------PDWPKGYSRKGSALSYLGRYKESI 99
+N + + G+Y++ALE EK + L P+ + + LG Y E++
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66
Query: 100 STYEEGLKLDPN 111
E+ L L
Sbjct: 67 EYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-------DPKFLKGWIRKGKILQGMQ 460
+PD +N A +L +D L+ E L+L P+ + ++ +
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 461 QQSKAIDAYEKALELD 476
+A++ EKAL L
Sbjct: 61 DYDEALEYLEKALALR 76
|
Length = 78 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G+A LG Y E++ YE+ L+LDPNN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTD 280
LG YK ++EEAL Y KA+E DP +
Sbjct: 6 NLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 17/70 (24%), Positives = 28/70 (40%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
P E +G +NG + +AV +A P D + ++ A +L FD +
Sbjct: 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155
Query: 434 DCETCLKLDP 443
L+L P
Sbjct: 156 AYRQALELAP 165
|
Length = 257 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
K G + + +A++ YEKALEL+ +N
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G A LG Y+E++ YE+ L+LDPNN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA------VYFERKEYDQCIEQYI 305
EL +A + + + A A KA+ DP + A + + +Y IE
Sbjct: 185 ELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAAAIEALE 238
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-IRTLISEMEKK 363
+ E ++ +++ L ++ CY+ + D + +++ E+ + + L +E++
Sbjct: 239 RVEEQDPEY--LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQ 295
|
Length = 389 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| KOG0548|consensus | 539 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG0547|consensus | 606 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG0624|consensus | 504 | 100.0 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| KOG2002|consensus | 1018 | 100.0 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| KOG2002|consensus | 1018 | 100.0 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG1126|consensus | 638 | 99.97 | ||
| KOG1155|consensus | 559 | 99.97 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.97 | |
| KOG1126|consensus | 638 | 99.96 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG1173|consensus | 611 | 99.96 | ||
| KOG0547|consensus | 606 | 99.96 | ||
| KOG2076|consensus | 895 | 99.95 | ||
| KOG2003|consensus | 840 | 99.95 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| KOG0550|consensus | 486 | 99.94 | ||
| KOG1155|consensus | 559 | 99.94 | ||
| KOG1173|consensus | 611 | 99.94 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.93 | |
| KOG2076|consensus | 895 | 99.93 | ||
| KOG0495|consensus | 913 | 99.92 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.92 | |
| KOG1125|consensus | 579 | 99.92 | ||
| KOG0548|consensus | 539 | 99.92 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.92 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.91 | |
| KOG1174|consensus | 564 | 99.91 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.91 | |
| KOG0624|consensus | 504 | 99.91 | ||
| KOG4162|consensus | 799 | 99.91 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.91 | |
| KOG2003|consensus | 840 | 99.9 | ||
| KOG1129|consensus | 478 | 99.9 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.89 | |
| KOG1129|consensus | 478 | 99.89 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.89 | |
| KOG1156|consensus | 700 | 99.89 | ||
| KOG1125|consensus | 579 | 99.89 | ||
| KOG1127|consensus | 1238 | 99.89 | ||
| KOG0495|consensus | 913 | 99.88 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| KOG1174|consensus | 564 | 99.87 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.85 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.84 | |
| KOG1156|consensus | 700 | 99.84 | ||
| KOG1127|consensus | 1238 | 99.83 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.83 | |
| KOG4162|consensus | 799 | 99.83 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.82 | |
| KOG2376|consensus | 652 | 99.82 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.81 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.81 | |
| KOG1840|consensus | 508 | 99.81 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.79 | |
| KOG1840|consensus | 508 | 99.78 | ||
| KOG3785|consensus | 557 | 99.78 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 99.78 | |
| KOG1915|consensus | 677 | 99.78 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.78 | |
| KOG0553|consensus | 304 | 99.77 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.77 | |
| KOG0550|consensus | 486 | 99.77 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.76 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.74 | |
| KOG2376|consensus | 652 | 99.73 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.73 | |
| KOG3060|consensus | 289 | 99.7 | ||
| KOG0553|consensus | 304 | 99.69 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.67 | |
| KOG3785|consensus | 557 | 99.67 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.65 | |
| KOG4340|consensus | 459 | 99.65 | ||
| KOG3060|consensus | 289 | 99.64 | ||
| KOG1130|consensus | 639 | 99.64 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.63 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.61 | |
| KOG1915|consensus | 677 | 99.6 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.56 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.53 | |
| KOG1130|consensus | 639 | 99.53 | ||
| KOG1128|consensus | 777 | 99.53 | ||
| KOG1128|consensus | 777 | 99.52 | ||
| KOG2047|consensus | 835 | 99.51 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.5 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.49 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.42 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.42 | |
| KOG4648|consensus | 536 | 99.41 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.38 | |
| KOG4340|consensus | 459 | 99.38 | ||
| KOG4648|consensus | 536 | 99.35 | ||
| KOG4234|consensus | 271 | 99.35 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.34 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.32 | |
| KOG0543|consensus | 397 | 99.3 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.29 | |
| KOG0543|consensus | 397 | 99.28 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.27 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.25 | |
| KOG2047|consensus | 835 | 99.24 | ||
| KOG4234|consensus | 271 | 99.24 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.22 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.22 | |
| KOG1941|consensus | 518 | 99.22 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.19 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.16 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.09 | |
| KOG3081|consensus | 299 | 99.08 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.06 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 99.04 | |
| KOG3081|consensus | 299 | 99.01 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 99.01 | |
| KOG1070|consensus | 1710 | 99.0 | ||
| KOG2053|consensus | 932 | 99.0 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.99 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.97 | |
| KOG1941|consensus | 518 | 98.96 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.93 | |
| KOG2471|consensus | 696 | 98.93 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.9 | |
| KOG1070|consensus | 1710 | 98.89 | ||
| KOG3617|consensus | 1416 | 98.89 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.87 | |
| KOG2471|consensus | 696 | 98.86 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.85 | |
| KOG4642|consensus | 284 | 98.85 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.83 | |
| KOG3617|consensus | 1416 | 98.8 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.79 | |
| KOG4555|consensus | 175 | 98.77 | ||
| KOG4555|consensus | 175 | 98.76 | ||
| KOG2300|consensus | 629 | 98.75 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.75 | |
| KOG0376|consensus | 476 | 98.74 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.73 | |
| KOG2053|consensus | 932 | 98.73 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.67 | |
| KOG1914|consensus | 656 | 98.66 | ||
| KOG0545|consensus | 329 | 98.63 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.6 | |
| KOG2796|consensus | 366 | 98.6 | ||
| KOG4642|consensus | 284 | 98.59 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.59 | |
| KOG4507|consensus | 886 | 98.59 | ||
| KOG1308|consensus | 377 | 98.58 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.58 | |
| KOG1586|consensus | 288 | 98.56 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.54 | |
| KOG0376|consensus | 476 | 98.52 | ||
| KOG0545|consensus | 329 | 98.51 | ||
| KOG1914|consensus | 656 | 98.49 | ||
| KOG0551|consensus | 390 | 98.48 | ||
| KOG1258|consensus | 577 | 98.47 | ||
| KOG2796|consensus | 366 | 98.44 | ||
| KOG2300|consensus | 629 | 98.44 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.43 | |
| KOG1586|consensus | 288 | 98.4 | ||
| KOG1308|consensus | 377 | 98.37 | ||
| KOG3616|consensus | 1636 | 98.35 | ||
| KOG1585|consensus | 308 | 98.34 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.34 | |
| KOG1585|consensus | 308 | 98.28 | ||
| KOG0551|consensus | 390 | 98.25 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.22 | |
| KOG0985|consensus | 1666 | 98.18 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.18 | |
| KOG2610|consensus | 491 | 98.14 | ||
| KOG2610|consensus | 491 | 98.14 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.13 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.1 | |
| KOG1258|consensus | 577 | 98.09 | ||
| KOG1550|consensus | 552 | 98.07 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.07 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.05 | |
| KOG1550|consensus | 552 | 98.03 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.02 | |
| KOG3616|consensus | 1636 | 97.99 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.93 | |
| KOG0985|consensus | 1666 | 97.93 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.88 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.87 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.86 | |
| KOG1464|consensus | 440 | 97.84 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.79 | |
| KOG0530|consensus | 318 | 97.79 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.67 | |
| KOG0890|consensus | 2382 | 97.66 | ||
| KOG0890|consensus | 2382 | 97.58 | ||
| KOG0530|consensus | 318 | 97.55 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.5 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.45 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.45 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.44 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.42 | |
| KOG2396|consensus | 568 | 97.35 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.28 | |
| KOG2041|consensus | 1189 | 97.27 | ||
| KOG1310|consensus | 758 | 97.27 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.23 | |
| KOG2041|consensus | 1189 | 97.21 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.15 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.13 | |
| KOG3824|consensus | 472 | 97.13 | ||
| KOG4507|consensus | 886 | 97.13 | ||
| KOG3824|consensus | 472 | 97.12 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 97.1 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.1 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.09 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.05 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.05 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 97.01 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.95 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.94 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.89 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.86 | |
| KOG2396|consensus | 568 | 96.82 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.79 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.79 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.78 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.74 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.65 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.63 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.62 | |
| KOG3364|consensus | 149 | 96.61 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.59 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.55 | |
| KOG1310|consensus | 758 | 96.55 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.52 | |
| KOG3783|consensus | 546 | 96.47 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.36 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.35 | |
| KOG4814|consensus | 872 | 96.29 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.25 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.23 | |
| KOG1464|consensus | 440 | 96.21 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.21 | |
| KOG3364|consensus | 149 | 96.14 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.03 | |
| KOG3783|consensus | 546 | 95.88 | ||
| KOG1463|consensus | 411 | 95.87 | ||
| KOG2422|consensus | 665 | 95.83 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.83 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.73 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 95.73 | |
| KOG4814|consensus | 872 | 95.69 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.63 | |
| KOG0529|consensus | 421 | 95.5 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.34 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.32 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.26 | |
| KOG1839|consensus | 1236 | 95.15 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.04 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.86 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.77 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 94.67 | |
| smart00727 | 41 | STI1 Heat shock chaperonin-binding motif. | 94.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.61 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.59 | |
| KOG1839|consensus | 1236 | 94.57 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.36 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.33 | |
| KOG0546|consensus | 372 | 94.32 | ||
| KOG3807|consensus | 556 | 94.26 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.13 | |
| KOG1463|consensus | 411 | 94.04 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.02 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.9 | |
| KOG0529|consensus | 421 | 93.9 | ||
| KOG1538|consensus | 1081 | 93.82 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.78 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.68 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.64 | |
| KOG0546|consensus | 372 | 93.64 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.59 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.52 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.34 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.25 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.16 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.15 | |
| KOG2581|consensus | 493 | 93.13 | ||
| KOG3807|consensus | 556 | 92.75 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.69 | |
| KOG4151|consensus | 748 | 92.5 | ||
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 92.23 | |
| KOG2581|consensus | 493 | 92.22 | ||
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.93 | |
| KOG0686|consensus | 466 | 91.92 | ||
| KOG1538|consensus | 1081 | 91.75 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.5 | |
| KOG2422|consensus | 665 | 91.35 | ||
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 91.33 | |
| KOG0128|consensus | 881 | 91.28 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.1 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.01 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 90.67 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 89.9 | |
| KOG0128|consensus | 881 | 89.79 | ||
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.65 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.02 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.93 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.9 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.77 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 88.57 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.54 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 88.3 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 88.18 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.35 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 87.19 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 87.13 | |
| KOG2114|consensus | 933 | 86.74 | ||
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 86.36 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 86.26 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 86.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.08 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.66 | |
| KOG0686|consensus | 466 | 84.94 | ||
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 83.34 | |
| KOG1920|consensus | 1265 | 83.28 | ||
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 83.25 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 83.07 | |
| KOG0276|consensus | 794 | 82.65 | ||
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 82.63 | |
| KOG4151|consensus | 748 | 82.51 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 82.24 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 82.2 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.06 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 81.26 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 80.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 80.58 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 80.51 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 80.47 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 80.3 | |
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 80.15 | |
| KOG4014|consensus | 248 | 80.11 |
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=362.10 Aligned_cols=531 Identities=50% Similarity=0.807 Sum_probs=469.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
+..+..+|+..+..|+|+.|+.+|..+|.++|.+...|.+...+|..+|+|++|++.-.+.++++|+++.+|.++|..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
-+|+|++|+..|.+.++.+|+|.....+++.++.. ... ....+..|.+...+..+|.....+.++.|...+..
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-----~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-----ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-----hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 99999999999999999999999999999988833 111 17788999999999999999999999999999999
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
++.+|......+.++++......+.++.......... ...+............. +..............+...
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~-~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI------EILASMAEPCKQEHNGF-PIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc------ccCCCCCCcccccCCCC-CccchhHHHHHHHHhhhHH
Confidence 9999999999999999999999999887652111110 00010000000011111 1111111111244467778
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC----hhHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD----FKLIAKALQRIGN 326 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~l~~ 326 (570)
..+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+++.....+++.... ...+..++..+|.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999 99999999999999999999999999998865443 3345677777899
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.|...++++.|+.+|.+++..+.++++.......+++....+.....+|.-...-...|..+++.|+|..|+..|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
.+|+++.+|.++|.||.++|.+..|+..++.+++++|+...+|.+.|.++..+.+|++|.+.|+++++++|++.++...+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHhcCchhh
Q psy3014 487 RQCSIAVS--SNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVL 557 (570)
Q Consensus 487 ~~~~~~~~--~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (570)
.+|...+. .+++...+..+.||++..++.||.+..++.+++.+| ++..++++|.|...+++++.+|++.+
T Consensus 467 ~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~~~g~~~~ 538 (539)
T KOG0548|consen 467 RRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLISAGIIQV 538 (539)
T ss_pred HHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHHHhhhhcc
Confidence 99999643 378899999999999999999999999999999999 88899999999999999999998865
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=354.03 Aligned_cols=392 Identities=19% Similarity=0.239 Sum_probs=365.4
Q ss_pred chhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhH
Q psy3014 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG 81 (570)
Q Consensus 2 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (570)
..++..|+-++.|..+|+++...|++++|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|+...+
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
+..+|.++...|+..+|..+|.++++..|...-+|..|+.++..+++...+..
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq--------------------------- 239 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ--------------------------- 239 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH---------------------------
Confidence 99999999999999999999999999999999999988888777333221111
Q ss_pred hHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy3014 162 PSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLT 241 (570)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (570)
.+.+++.
T Consensus 240 -------------------------------------------------------------------------~y~eAvk 246 (966)
T KOG4626|consen 240 -------------------------------------------------------------------------HYEEAVK 246 (966)
T ss_pred -------------------------------------------------------------------------HHHHhhc
Confidence 2223344
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
.+|..+.+|+++|.+|...+.|+.|+.+|.+|+.+.|++..++.++|.+|+.+|..+-||..|+++++..|.+ +.++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F---~~Ay 323 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF---PDAY 323 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc---hHHH
Confidence 5567789999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
.++|..+...|+..+|..+|.+++...++ +.+....+.++.|...|.++++..|..+.++.++|.+|..+|+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 99999999999999999999999998887 4467777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+++|+.+|++++.+.|..++++.++|..|..+|+.+.|+.+|.+++.++|..++++.++|.+|...|+..+|+..|+.++
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 474 ELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 474 ~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+++|+.+++..++..|+.-..+.
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcc
Confidence 99999999999999999988873
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=342.45 Aligned_cols=440 Identities=18% Similarity=0.202 Sum_probs=347.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
++.......++...++.|+|.+|.+....+-..+|.+......++.++++..+++.....-..+++.+|...+++-++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34455678899999999999999999999998888876666666666666666666666666666666666666666666
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|+.++++.|++.+++..++.++...++...+.+.+...++ .+|......++ .-..
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---------lnP~l~ca~s~--lgnL 193 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------LNPDLYCARSD--LGNL 193 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---------cCcchhhhhcc--hhHH
Confidence 666666666666666666666666666666666666665555555554443331 11100000000 0000
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
++.. +++. .+...+.+++...|.-+
T Consensus 194 lka~-------------Grl~------------------------------------------ea~~cYlkAi~~qp~fA 218 (966)
T KOG4626|consen 194 LKAE-------------GRLE------------------------------------------EAKACYLKAIETQPCFA 218 (966)
T ss_pred HHhh-------------cccc------------------------------------------hhHHHHHHHHhhCCcee
Confidence 0000 0000 01122223333344566
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
-+|.++|.++..+|+...|+..|++|++++|+.+++++++|.+|...+.+++|+.+|.+++...|++ +.++.++|.+
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---AVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---hhhccceEEE
Confidence 7788999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
|..+|..+-|+..|+++++..|. +..+...|+..+|...|.+++...|..+++..++|.++..+|.+++|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999887 3456677899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.|.++++..|....++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+...|+.+|.+|+.++|..
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHHHhhcC
Q psy3014 480 AEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQQILRD 516 (570)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~~~~~~ 516 (570)
.+++.+|+.++...|+..++. ...+..+|++.+...+
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 999999999999999976643 4556677877765443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=309.94 Aligned_cols=417 Identities=21% Similarity=0.260 Sum_probs=276.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4677899999999999999999999999999996 788999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHH-HHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAI-KDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
..+|++++|+..|..+...++.+......+ ...+.. .. .....
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~a-----------------------------------~~~~~ 248 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK-FA-----------------------------------ESKAK 248 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-HH-----------------------------------HHHHH
Confidence 999999999999998887766544322111 111111 00 00000
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCC--------CCCCCCCCCCCCCCCccc
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKK--------APSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 240 (570)
..+...+... .....+....+.......................... .........+...+...+
T Consensus 249 ~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 249 EILETKPENL-------PSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHhcCCCCC-------CCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 0000000000 0000000000000000000000000000000000000 000000000000111111
Q ss_pred c---hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 241 T---DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 241 ~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
. ..|..+.++..+|.++...|++++|+..|+++++++|.+...+..+|.++...|++++|+..++++++.+|++
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--- 398 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--- 398 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 1 1244555555566666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+.+++.+|.++...|++++|+.+|++++. .+|++...+..+|.++...|++++|
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~--------------------------l~P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSID--------------------------LDPDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------cCccCHHHHHHHHHHHHHCCCHHHH
Confidence 55556666666666666666666666655 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-HhCCCHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG------WIRKGKIL-QGMQQQSKAIDAYE 470 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~~~A~~~~~ 470 (570)
+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+.... +...+.++ ...|++++|+..++
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875332 23333334 44799999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++++++|++..++..++.++..+|+..++
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999999999996654
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=260.12 Aligned_cols=425 Identities=21% Similarity=0.290 Sum_probs=319.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
-..+..+..+|+.++++|+|++||++|++||.+.|+.+..|.+++.||...|+|++.++.+.++++++|+.+.++++++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhhh------cc-CCCccccccCCCchHHHHhhhCCCCC---
Q psy3014 88 ALSYLGRYKESISTYEEGLKLD-PNNEQMKEAIKDVRNQEMN------DM-NRGDPFANLFSDPNIFVQLQLDPRTK--- 156 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (570)
++..+|++++|+....-..-.. =++......+-+++..++. .. +....+........++.....++...
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 9999999999998765332111 1122222222222222110 00 11111111111111222222222221
Q ss_pred -CCCCChHHHHHHHHHhhCc-hhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 157 -PFLSDPSYVQMIKEIQKDP-SLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAE 234 (570)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (570)
...++......+..+.... +.+.. ............... ....
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~---------a~~~~te~~~~~~~~--------------------------~~~n 316 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLK---------AYDKATEECLGSESS--------------------------LSVN 316 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHH---------HHHHHHHHhhhhhhh--------------------------cccc
Confidence 1223334444444432221 11110 000000000000000 0000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 235 PEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
..+ ..-..-+.++...|..++-.|++..|...|+++|+++|.+...+..+|.+|...++.++-...|.++..++|.+
T Consensus 317 ~~d---~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n 393 (606)
T KOG0547|consen 317 EID---AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN 393 (606)
T ss_pred ccc---hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC
Confidence 000 01135688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
+.+|+..|.+++-++++++|+..|++++. ++|++.-.+..++.+.++++++
T Consensus 394 ---~dvYyHRgQm~flL~q~e~A~aDF~Kai~--------------------------L~pe~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 394 ---PDVYYHRGQMRFLLQQYEEAIADFQKAIS--------------------------LDPENAYAYIQLCCALYRQHKI 444 (606)
T ss_pred ---CchhHhHHHHHHHHHHHHHHHHHHHHHhh--------------------------cChhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH-hCCCHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQ-GMQQQSKAID 467 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~-~~g~~~~A~~ 467 (570)
++++..|+.+.+..|+.++++...|.++..++++++|++.|++++.+.|. ++..+...|.+.. -.+++..|+.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 6666666665543 3488999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 468 AYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 468 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
.+++|+++||....++..++++..++|+..++
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999986553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=313.89 Aligned_cols=424 Identities=17% Similarity=0.182 Sum_probs=353.6
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..|.++..+..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|++..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
+.++...|++++|+..+++++..+|.+...+..++.++...++...+...+...... .+. .....
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~------~~~~~ 604 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA---------APD------SPEAW 604 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---------CCC------CHHHH
Confidence 999999999999999999999999999999999999988877666666555544311 000 00111
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
..+...-..... -......+.... ...|.
T Consensus 605 ~~l~~~~~~~~~------~~~A~~~~~~~~---------------------------------------------~~~~~ 633 (899)
T TIGR02917 605 LMLGRAQLAAGD------LNKAVSSFKKLL---------------------------------------------ALQPD 633 (899)
T ss_pred HHHHHHHHHcCC------HHHHHHHHHHHH---------------------------------------------HhCCC
Confidence 000000000000 000111111111 11224
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+....|.+ ...+..+|
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~ 710 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA---ALGFELEG 710 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---hHHHHHHH
Confidence 566788899999999999999999999999999999999999999999999999999999999888888 78888899
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPE-------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++...|++++|+..|++++...++.. .+...|++++|...+++.+...|.++.++..+|.++...|++++|+
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999998877643 3445577889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..|+++++..|+++.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++...|++++|+.+|+++++.+|.
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++.++..++.++...|+..++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=313.28 Aligned_cols=418 Identities=10% Similarity=0.094 Sum_probs=315.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChh--------------H
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK--------------G 81 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 81 (570)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45777777788888888888888888877777888888888888888888888888877776542 1
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
...+|.++...|++++|+..|+++++.+|++..++..++.++...++...+...+.+++.. +|...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------~p~~~----- 419 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------DPGNT----- 419 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCH-----
Confidence 2345777777788888888888888888877777777777777766666665555544321 11000
Q ss_pred hHHHHHHHHH-hhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 162 PSYVQMIKEI-QKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
..+......+ ...++....++. .+...... .. ..
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~---------~l~~~~~~-------------------------------~~-----~~ 454 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIA---------SLSASQRR-------------------------------SI-----DD 454 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH---------hCCHHHHH-------------------------------HH-----HH
Confidence 0000000000 000000000000 00000000 00 00
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.........+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|++ +..
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~---~~~ 531 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND---PEQ 531 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHH
Confidence 00011234567789999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCH------------------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP------------------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
++.++..+...+++++|+..++++.....+. ..+...++.++|+..++ ..|.++..+.
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~ 607 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHH
Confidence 9999999999999999999998875433221 12334456677777665 5788999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 462 (570)
.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+++..+..+|.++...|++
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhcCCHHH
Q psy3014 463 SKAIDAYEKALELDASNA------EAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 463 ~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~e~ 499 (570)
++|+..|++++...|+++ .++..++.++...|+..++
T Consensus 688 ~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999877654 4667789999999985543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=310.50 Aligned_cols=420 Identities=17% Similarity=0.167 Sum_probs=303.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
|........++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..+++.+|.
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|++++..+|++..++..++.++...++...+...+.+.... .|... ......
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~-----~~~~~l 573 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---------NPQEI-----EPALAL 573 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------Cccch-----hHHHHH
Confidence 9999999999999999999999999999999999998866666665555443310 00000 000000
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
... +............+.. .....|..+
T Consensus 574 ~~~----------~~~~~~~~~A~~~~~~------------------------------------------~~~~~~~~~ 601 (899)
T TIGR02917 574 AQY----------YLGKGQLKKALAILNE------------------------------------------AADAAPDSP 601 (899)
T ss_pred HHH----------HHHCCCHHHHHHHHHH------------------------------------------HHHcCCCCH
Confidence 000 0000001010000000 000112345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++ ..++..++.+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 678 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN---TEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHH
Confidence 5677777777777777777777777777777777777777777777777777777777777777777 6677777777
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
+...|++++|+..++.+....+.. .++...+++++|+..+++++...|.. ..+..++.++...|++++|+.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777776655542 23344566777777777777766665 556667777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.++++++..|+++.+++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++++.|++
T Consensus 758 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~ 836 (899)
T TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNI 836 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777 66777777777777777
Q ss_pred HHHHHHHHHHHHHhcCCHH
Q psy3014 480 AEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~e 498 (570)
+.++..++.++...|+..+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADR 855 (899)
T ss_pred cHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=282.50 Aligned_cols=344 Identities=16% Similarity=0.215 Sum_probs=285.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCC-------------
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP------------- 76 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------- 76 (570)
++..+..+|.+++..|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|..+...++
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL 238 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999988766543332
Q ss_pred -----------------CChhHHhHHHHH---------------------------------H---hhccCHHHHHHHHH
Q psy3014 77 -----------------DWPKGYSRKGSA---------------------------------L---SYLGRYKESISTYE 103 (570)
Q Consensus 77 -----------------~~~~~~~~la~~---------------------------------~---~~~g~~~~A~~~~~ 103 (570)
.+...+..+|.. + ...+++++|+..|+
T Consensus 239 l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 211111111111 1 11257888999999
Q ss_pred HhhccC---CCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh
Q psy3014 104 EGLKLD---PNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT 180 (570)
Q Consensus 104 ~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (570)
+++... |....++..++.++...++...+...+.+
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k------------------------------------------ 356 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK------------------------------------------ 356 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------------------------
Confidence 988764 66667777777777653322222111111
Q ss_pred hccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHc
Q psy3014 181 KLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKK 260 (570)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 260 (570)
.+...|..+..+..+|.++...
T Consensus 357 ----------------------------------------------------------al~l~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 357 ----------------------------------------------------------SIELDPRVTQSYIKRASMNLEL 378 (615)
T ss_pred ----------------------------------------------------------HHHcCCCcHHHHHHHHHHHHHC
Confidence 1112335678899999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH------
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY------ 414 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 414 (570)
|++++. ..|.++.++..+|.++...|++++|+..|++++.+.|.+...
T Consensus 456 ~~~al~--------------------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 456 FRRCKK--------------------------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHH--------------------------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 999998 889999999999999999999999999999999999875332
Q ss_pred HHHHHHHH-HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 415 YSNRAACY-TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 415 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
+...+..+ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 23333334 447999999999999999999999999999999999999999999999999999876553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=297.23 Aligned_cols=456 Identities=14% Similarity=0.105 Sum_probs=294.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchh----------------hchhHHHhcccCHHHHHHHHhc
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILF----------------SNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------------~~la~~~~~~g~~~~A~~~~~~ 70 (570)
.|.+++.+..++.++...|++++|...++++++.+|+++.++ ..+|.++...|++++|+..|++
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566666666666666666666666666666666665442 3445556666666666666666
Q ss_pred hhccCCCChhH-HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHH---
Q psy3014 71 TISLKPDWPKG-YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF--- 146 (570)
Q Consensus 71 al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (570)
++..+|.+... ...+..+....|++++|+..|+++++.+|++..++..++.++...++..++...+.++...+...
T Consensus 138 ~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 138 LFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred HccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 66666555321 11222223334666666666666666666666666666666655444444444443332211000
Q ss_pred -----HHhhhCCCCCCCCCChHHHHHHHH-HhhCchhH-----Hh-------hccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 147 -----VQLQLDPRTKPFLSDPSYVQMIKE-IQKDPSLM-----TT-------KLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
..+... .........+.. +...+... .. ...++...... .+....
T Consensus 218 a~~~~~~l~~~------~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~---~G~~~~-------- 280 (1157)
T PRK11447 218 AQLWYGQIKDM------PVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA---QGLAAV-------- 280 (1157)
T ss_pred HHHHHHHHhcc------CCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH---HHHHHH--------
Confidence 000000 000000000000 00000000 00 00011110000 000000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT------ 282 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 282 (570)
.......+...+...+...|.++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 281 ----------------~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 281 ----------------DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred ----------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 0000001222333444556778899999999999999999999999999999997642
Q ss_pred --------HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-H
Q psy3014 283 --------FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-I 353 (570)
Q Consensus 283 --------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~ 353 (570)
....+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++...|... .
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 12345788889999999999999999999998 88999999999999999999999999998776621 0
Q ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 354 -------------------------------------------------RTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 354 -------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
+...+++++|+..+++++..+|+++.+++.+
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L 501 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL 501 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1123567888888999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH--------------------------
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC-------------------------- 438 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------------------------- 438 (570)
|.++...|++++|+..++++++..|+++..++.++..+...|++++|+..++++
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999888888887777776666666666666555432
Q ss_pred --------------HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 439 --------------LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 439 --------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
+...|.++..++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+..+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 223567777778888888888888888888888888888888888888888888888554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=279.01 Aligned_cols=347 Identities=11% Similarity=0.029 Sum_probs=290.6
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
.+........+...+..+.+.|++++|+..++.++...|.++.+++.+|.+....|++++|+..+++++..+|+++.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 35 VRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred hhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 33444455667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..|++++.++|++..++..++.++...++...+...+..+.
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~----------------------- 171 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA----------------------- 171 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-----------------------
Confidence 999999999999999999999999999999999888888766322221111111000
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
...
T Consensus 172 -----------------------------------------------------------------------------~~~ 174 (656)
T PRK15174 172 -----------------------------------------------------------------------------QEV 174 (656)
T ss_pred -----------------------------------------------------------------------------HhC
Confidence 001
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
|..+..+...+ .+...|++++|+..+++++..+|. +......++.++...|++++|+..+++++...|++ ..++.
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~---~~~~~ 250 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG---AALRR 250 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHH
Confidence 12223333333 467788888888888888888753 34444566778888888888888888888888888 88888
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 323 RIGNCYKKMEDWKN----AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 323 ~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.+|.++...|++++ |+..|++++. .+|+++.++..+|.++...|++++|+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--------------------------FNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888885 6777777777 89999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|+
T Consensus 305 ~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999998877777899999999999999999999999988
Q ss_pred cH
Q psy3014 479 NA 480 (570)
Q Consensus 479 ~~ 480 (570)
+.
T Consensus 385 ~~ 386 (656)
T PRK15174 385 HL 386 (656)
T ss_pred hc
Confidence 65
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=232.70 Aligned_cols=402 Identities=18% Similarity=0.271 Sum_probs=331.9
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|.+++..+.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+...+|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.+++++|.+++|...|..++..+|++.........+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~----------------------------------------- 152 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI----------------------------------------- 152 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-----------------------------------------
Confidence 999999999999999999999999765443322221111
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
..
T Consensus 153 ------------------------------------------------------------------------------~e 154 (504)
T KOG0624|consen 153 ------------------------------------------------------------------------------QE 154 (504)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
-..+......++..|+...|+......+++.|.+...+..++.||...|+...||..++.+-++..++ .+.++.++.
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn---Te~~ykis~ 231 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN---TEGHYKISQ 231 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---hHHHHHHHH
Confidence 22333455566778999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEI----RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+++..|+.+.++...+.+++..|+... +..+....+.++. +......++|.++++..+
T Consensus 232 L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les------------------~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES------------------AEQAIEEKHWTECLEAGE 293 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH------------------HHHHHhhhhHHHHHHHHH
Confidence 999999999999999999997776432 1222222222221 333466789999999999
Q ss_pred HHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 403 EAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 403 ~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+.++.+|..+. ....+..|+..-|++.+|+..+.+++..+|++..++...+..|.....|+.|+..|++|.+.+|+
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 99999998544 45567889999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHcCCc------hHH------------HhhcCHHHHHHHHHhhcCHHHHHHhhcCH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEEVRKRAMGDP------EVQ------------QILRDPAMRLILEQMQNDPRALSDHLKNP 540 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~~~~~~~~~p------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (570)
|..+..++-++..........-+..+.... ++. ..+.|..-+...+.-..|..++...++||
T Consensus 374 n~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 374 NTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 999999998887666553332332222211 111 12344444555555566888899999999
Q ss_pred HHHHHHHH
Q psy3014 541 EIASKIQK 548 (570)
Q Consensus 541 ~~~~~~~~ 548 (570)
+.|..+++
T Consensus 454 EkRrqFDn 461 (504)
T KOG0624|consen 454 EKRRQFDN 461 (504)
T ss_pred HHHhhccC
Confidence 99888875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=277.49 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=287.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|..++.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.++.
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~ 148 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFA 148 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..+++++...|++..++..+.. +...++..
T Consensus 149 ~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~--------------------------------- 194 (656)
T PRK15174 149 LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLP--------------------------------- 194 (656)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHH---------------------------------
Confidence 99999999999999999999999999999887765533 22211111
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
.++..+ ..++... +
T Consensus 195 --eA~~~~--------------------~~~l~~~---------------------------------~----------- 208 (656)
T PRK15174 195 --EDHDLA--------------------RALLPFF---------------------------------A----------- 208 (656)
T ss_pred --HHHHHH--------------------HHHHhcC---------------------------------C-----------
Confidence 111110 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH----HHHHHHHHhhcccChhHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQ----CIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~~~~~~~~~ 319 (570)
+........++.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|+++++.+|++ ..
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---~~ 285 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---VR 285 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---HH
Confidence 01112334568889999999999999999999999999999999999999999986 899999999999999 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
++..+|.++...|++++|+..+++++. .+|+++.++..+|.++...|++++|+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~--------------------------l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLA--------------------------THPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.|++++..+|+++..+..+|.++...|++++|+..|+++++.+|++. ...+++|+..|.++++.-+..
T Consensus 340 ~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 340 EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 99999999999988888889999999999999999999999999875 244456666666666655443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-30 Score=249.07 Aligned_cols=432 Identities=16% Similarity=0.165 Sum_probs=321.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
+..++.+|.+|..+..+|+|++|..+|.++++.+|++ .-+++++|..|+..|+++.|..+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 4567788899999999999999999999999988887 777888999999999999999999999999999999988899
Q ss_pred HHHhhcc----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 87 SALSYLG----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 87 ~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
.+|...+ ..+.|.....++++..|.+.++|..++.++.. .+.....+.+..+.. .+. ... .. ..+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d---~L~---~~~---~~-ip~ 452 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALD---ILE---SKG---KQ-IPP 452 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHH---HHH---HcC---CC-CCH
Confidence 8888876 56788888888888889999999888888877 222111221111110 000 000 00 001
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
.+.+.+..+.-.... -+.....+....+..... . ....
T Consensus 453 E~LNNvaslhf~~g~------~~~A~~~f~~A~~~~~~~-------------------------------~-----n~de 490 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGN------IEKALEHFKSALGKLLEV-------------------------------A-----NKDE 490 (1018)
T ss_pred HHHHhHHHHHHHhcC------hHHHHHHHHHHhhhhhhh-------------------------------c-----Cccc
Confidence 111111111000000 000011111111110000 0 0000
Q ss_pred -hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 -EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
........+++|.++...++++.|.+.|...++.+|...+++..+|......+...+|...+..++..+..+ +.++
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n---p~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN---PNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC---cHHH
Confidence 112244577888888888888888888888888888888888888877777778888888888888888777 7888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCH-H---------------------HHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTP-E---------------------IRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
..+|.++....++..|..-|+.+++..... + -....+..++|+..|.+++..+|.+..
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~y 647 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMY 647 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 888888888888887777666665532221 1 122345689999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIRKGKILQ 457 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 457 (570)
+-..+|.++...|++.+|...|.++.+...+.+.+|.++|.||..+|+|..|++.|+.+++.. .+++..+..||.+++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999998877889999999999999999999999999999863 457889999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
..|.+.+|.++..+|+.+.|.++.+..+++.++.++..
T Consensus 728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 728 EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=262.47 Aligned_cols=415 Identities=10% Similarity=0.063 Sum_probs=306.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..++++++..|++..++..++.++...+....+...+......|.....+..++ . ..
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~---------~-~~ 193 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADA---------A-AE 193 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHH---------H-HH
Confidence 9999999999999999999999999999999888887663322223323332222111000000000 0 00
Q ss_pred HHHHHhhCchh--HHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 167 MIKEIQKDPSL--MTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 167 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
.+. +...+.. .............+..++..... .-...+
T Consensus 194 ~~r-~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~--------------------------------------~p~~~~ 234 (765)
T PRK10049 194 LVR-LSFMPTRSEKERYAIADRALAQYDALEALWHD--------------------------------------NPDATA 234 (765)
T ss_pred HHH-hhcccccChhHHHHHHHHHHHHHHHHHhhccc--------------------------------------CCccch
Confidence 000 0000000 00000000011111111111000 000011
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-HHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK-LIAKALQ 322 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~ 322 (570)
....+.......+...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++...|... .......
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 2233333323344677999999999999999865432 3444469999999999999999999998877641 1135667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
.++.++...|++++|+..++++....|...... ......|+ ...++..+|.++...|++++|+..
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~-------------~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLY-------------GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeec-------------CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888999999999999999998544210000 00002333 346778899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy3014 481 EAVE 484 (570)
Q Consensus 481 ~~~~ 484 (570)
.+..
T Consensus 462 ~~~~ 465 (765)
T PRK10049 462 GVQR 465 (765)
T ss_pred HHHH
Confidence 7753
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=244.58 Aligned_cols=392 Identities=15% Similarity=0.178 Sum_probs=323.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
+.+.|.++..++.+|.+.+..|+|..|+.+|++++.++|.. +....++|.|+.++|+.+.|+..|+++++++|.++.++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 56678889999999999999999999999999999999874 67788999999999999999999999999999999999
Q ss_pred hHHHHHHhhccC---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 83 SRKGSALSYLGR---YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 83 ~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
..||.+-....+ +..++..+.++...+|.|+.+...|+..+...+++..+..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~------------------------- 291 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH------------------------- 291 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH-------------------------
Confidence 999988776554 6688999999999999999999888887766222211111
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
. .......
T Consensus 292 ----------l--------------------a~~ai~~------------------------------------------ 299 (1018)
T KOG2002|consen 292 ----------L--------------------AEHAIKN------------------------------------------ 299 (1018)
T ss_pred ----------H--------------------HHHHHHh------------------------------------------
Confidence 0 0000000
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
....+..++.++.+|..+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|+.+|+++++..|++ .
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~---~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN---Y 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch---H
Confidence 01122567889999999999999999999999999999999 7788999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHhcccCCH-HHH------HHHHHHHHHHHHHHHHhc-----CChhhHHHHH
Q psy3014 319 KALQRIGNCYKKME----DWKNAKVYFEKSMSEHRTP-EIR------TLISEMEKKIKEEEKKAY-----IDPVKAEEAK 382 (570)
Q Consensus 319 ~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~-~~~------~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 382 (570)
.+...+|.+|...+ ..+.|..+..+++...+.. +.. ...++...++..|..++. ..+-.++.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999998886 6788999999998876542 111 111222233444444432 3345688999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-----CCC-----CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINR-----NPD-----DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
++|..++..|++.+|...|..++.. +++ +...-+++|.++...++++.|.+.|..++..+|.+.+++..+
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 9999999999999999999999876 222 233589999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|......++..+|..+++.++..+..|+.+|..+|.++.....
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 9888899999999999999999999999999999988777666
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=261.57 Aligned_cols=266 Identities=12% Similarity=0.031 Sum_probs=233.2
Q ss_pred ccchhHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH
Q psy3014 239 NLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL 316 (570)
Q Consensus 239 ~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 316 (570)
.+...|. .+.+++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..+++++...|..
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-- 542 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-- 542 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--
Confidence 3344456 88999999999987 899999999999999999865 46677888889999999999999988776654
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-----HHHHH---HHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-----IRTLI---SEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
..+..+|.++...|++++|+.++++++...|... +.... |++++|+..+++++..+|+ +..+..+|.++
T Consensus 543 --~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 543 --EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4578889999999999999999999999876532 22334 8999999999999999997 89999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcCCH---HHHHHHHcCCchHH
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVSSNP---EEVRKRAMGDPEVQ 511 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~---e~~~~~~~~~p~~~ 511 (570)
|+++++++|++..+....+.+.....+.. +........+|...
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999998888887633 23333334445444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=249.47 Aligned_cols=389 Identities=15% Similarity=0.079 Sum_probs=298.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+.++........++.-.|++++|+..|.++...+|....++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44556666677788899999999999999999899988899999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..++++++.+|++.. +..++.++...++...+...+.+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~----------------------------- 141 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ----------------------------- 141 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999998 87777777662222211111111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
.+...|.++
T Consensus 142 -----------------------------------------------------------------------al~~~P~~~ 150 (765)
T PRK10049 142 -----------------------------------------------------------------------ALPRAPQTQ 150 (765)
T ss_pred -----------------------------------------------------------------------HHHhCCCCH
Confidence 112233456
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH-----HhcCH---HHHHHHHHHHhhcccCh
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT-----FQNNIAAVYF-----ERKEY---DQCIEQYIQKIENRADF 314 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~~~~---~~A~~~~~~~l~~~~~~ 314 (570)
.++..+|.++...+..++|+..++++.. .|.... ....+..+.. ..+++ ++|+..++.+++..|.+
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 6666777777777777777777776655 443211 1111122221 22234 67777777777553332
Q ss_pred h----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---------HHHHHHHHHHHHHHHHHHHHhcCChhh----
Q psy3014 315 K----LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---------PEIRTLISEMEKKIKEEEKKAYIDPVK---- 377 (570)
Q Consensus 315 ~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 377 (570)
+ ....+.......+...|++++|+..|++++...+. ..++...+++++|+..+++++..+|..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 1 11223232222345778999999999998887532 245666788999999999988877765
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD---------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
......++.++...|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456677788889999999999999999888762 23567889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
|.++.++..+|.++...|++++|+..++++++++|++..++..++.+...+++..+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999998544
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=233.11 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|..|++|..+|.+|..+++++.|+++|++|++++|....++..+|.=+.....++.|..+|+.++..+|.+ ..+|+.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---YnAwYG 494 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---YNAWYG 494 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh---hHHHHh
Confidence 35677788888888889999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+|.+|.++++++.|.-.|++|+. ++|.+......+|.++.+.|+.++|+..|++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~--------------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVE--------------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhc--------------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999998 8899999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
|+.++|.++...+..|.+++.++++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-..+
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875553
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-27 Score=208.90 Aligned_cols=358 Identities=17% Similarity=0.151 Sum_probs=300.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhH-----------------------------HHhcc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA-----------------------------AFAKE 58 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~ 58 (570)
..++-.++..|.++...|....|+..|..++...|-+-.+|..|+. ++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999988877666654443 44555
Q ss_pred cCHHHHHHHHhchhcc-CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc
Q psy3014 59 GNYEKALEDAEKTISL-KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 59 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
.+.++++.-++..+.. .|++...-...|.+.....++++|+..|+...+.+|-..+-......++....+.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-------- 312 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-------- 312 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--------
Confidence 6778888888887777 7888888888899999999999999999999999987655444444433320000
Q ss_pred ccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCC
Q psy3014 138 NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQP 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (570)
.++.........
T Consensus 313 -----------------------------------------------skLs~LA~~v~~--------------------- 324 (559)
T KOG1155|consen 313 -----------------------------------------------SKLSYLAQNVSN--------------------- 324 (559)
T ss_pred -----------------------------------------------HHHHHHHHHHHH---------------------
Confidence 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Q psy3014 218 PSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 297 (570)
.+.-.+++...+|+.|...++.++|+.+|++|++++|....+|..+|.-|..+++.
T Consensus 325 ------------------------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 325 ------------------------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred ------------------------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 01133556667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy3014 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377 (570)
Q Consensus 298 ~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 377 (570)
..|++.|++|++++|.+ ..+|+.+|..|.-++.+.=|+-+|+++.. ..|.+
T Consensus 381 ~AAi~sYRrAvdi~p~D---yRAWYGLGQaYeim~Mh~YaLyYfqkA~~--------------------------~kPnD 431 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRD---YRAWYGLGQAYEIMKMHFYALYYFQKALE--------------------------LKPND 431 (559)
T ss_pred HHHHHHHHHHHhcCchh---HHHHhhhhHHHHHhcchHHHHHHHHHHHh--------------------------cCCCc
Confidence 99999999999999999 99999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCCCHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK-------LDPKFLKGWI 450 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~ 450 (570)
+..|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ ..|+...+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999999999999999999999999988999999999999999999999999999998 4566777888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.++.-+.+.+++++|-.+..+++.-++.-.++...+..+...+.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999988888888877766553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=228.70 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=259.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----h
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----P 79 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~ 79 (570)
.++........+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. .
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 455666777888889999999999999999999999999999999999999999999999999999988854322 3
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
.++..+|.+|...|++++|+..|+++++.+|.+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------------------------------------------- 143 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------------------------------------------- 143 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHH--------------------------------------------
Confidence 568889999999999999999999999877654433
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (389)
T PRK11788 144 -------------------------------------------------------------------------------- 143 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-----TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
+..++.++...|++++|+..++++++..|.+. ..+..+|.++...|++++|+..++++++..|+.
T Consensus 144 ----------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 ----------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred ----------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 33467777778999999999999999887753 255678889999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCCC
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFKNGK 393 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 393 (570)
..++..+|.++...|++++|+..+++++. .+|.. ..++..++.++...|+
T Consensus 214 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 214 ---VRASILLGDLALAQGDYAAAIEALERVEE--------------------------QDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------HChhhHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999987 55554 4567788999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG--MQQQSKAIDAYEK 471 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 471 (570)
+++|+..++++++..|+...+ ..+|.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 999999999999999876544 8899999999999999999999999999887665445444422 4578888877776
Q ss_pred HH----hhCCCc
Q psy3014 472 AL----ELDASN 479 (570)
Q Consensus 472 al----~~~p~~ 479 (570)
.+ ..+|++
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 65 445653
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=225.71 Aligned_cols=292 Identities=17% Similarity=0.162 Sum_probs=256.8
Q ss_pred hhhchhHHHh--cccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 47 LFSNRSAAFA--KEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 47 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.+..+|..|. .+-+..+|+..|.+.-...++..+++..+|..|+.+++|++|..+|+.+-++.|-..+....+..++
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L- 397 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL- 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH-
Confidence 4445555554 4556789999999977778888899999999999999999999999999999886543322221111
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
T Consensus 398 -------------------------------------------------------------------------------- 397 (638)
T KOG1126|consen 398 -------------------------------------------------------------------------------- 397 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (570)
+...+--+---+-+..+..+|+.|+.|
T Consensus 398 -----------------------------------------------------WHLq~~v~Ls~Laq~Li~~~~~sPesW 424 (638)
T KOG1126|consen 398 -----------------------------------------------------WHLQDEVALSYLAQDLIDTDPNSPESW 424 (638)
T ss_pred -----------------------------------------------------HHHHhhHHHHHHHHHHHhhCCCCcHHH
Confidence 111121122223456778899999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
..+|.||.-+++++.|+++|+++++++|.+ +.+|..+|.-+....+++.|..+|++++.
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~------------------ 483 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALG------------------ 483 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhc------------------
Confidence 999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.
T Consensus 484 --------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 484 --------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred --------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHHH
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVR 501 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~~ 501 (570)
++-..+..|.+++.++++++|+..+++.-++-|++..++..+++++.++|+..-+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 999999999999999999999999999999999999999999999999999765543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=221.48 Aligned_cols=290 Identities=14% Similarity=0.118 Sum_probs=256.6
Q ss_pred cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 45 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
....+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+....
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------- 104 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---------- 104 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH----------
Confidence 4566778999999999999999999999999999999999999999999999999999998874322111
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T PRK11788 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (570)
.....+..+|.++...|++++|+..|+++++.+|.+..++
T Consensus 105 ----------------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 105 ----------------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 1234566789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKL--IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
..++.++...|++++|+..++++++..|.... ....+..+|.++...|++++|+..|+++++
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------- 208 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA---------------- 208 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----------------
Confidence 99999999999999999999999988776522 244567899999999999999999999998
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
..|....++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++..
T Consensus 209 ----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 209 ----------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred ----------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888899999999999999999999999999998876 467889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
.|+.... ..+|.++...|++++|+..++++++.+|++..+...+...+.
T Consensus 279 ~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 279 YPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLA 327 (389)
T ss_pred CCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhh
Confidence 9987544 889999999999999999999999999999877766655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=240.87 Aligned_cols=355 Identities=10% Similarity=0.022 Sum_probs=289.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccC-----------------------
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGN----------------------- 60 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----------------------- 60 (570)
.|.+.+.+...+.....+|++++|...|+++....++- ......++.+|...+.
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 36788999999999999999999999999999873332 1233367777765544
Q ss_pred --H---HHHHHHHhchhccCCC--ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCC
Q psy3014 61 --Y---EKALEDAEKTISLKPD--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133 (570)
Q Consensus 61 --~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 133 (570)
. ..+...+.+++..+|. ++.+|+.+|.++.. |++.+|+..|.+++...|++.. ...++.++...++...+.
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHH
Confidence 2 2244555666777788 99999999999987 8999999999999999997543 444444433311111111
Q ss_pred ccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCC
Q psy3014 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDV 213 (570)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (570)
..+.++. ..
T Consensus 530 ~~~rka~-------------------------------------------------------~~---------------- 538 (987)
T PRK09782 530 AAWQKIS-------------------------------------------------------LH---------------- 538 (987)
T ss_pred HHHHHHh-------------------------------------------------------cc----------------
Confidence 1111000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 214 DPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293 (570)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 293 (570)
+.....++.+|.++...|++++|+.+|+++++.+|.+...+..++.....
T Consensus 539 ------------------------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 539 ------------------------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred ------------------------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 01122356788888999999999999999999998888777777777777
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..|++++. .
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--------------------------l 638 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--------------------------L 638 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------h
Confidence 79999999999999999985 57888999999999999999999999998 8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|++..+....|
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+.....++..|.+.+.++..++|+.. +....+.++...++
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~ 759 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhccc
Confidence 999999999999999999999999988 87788888777776
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-26 Score=205.52 Aligned_cols=419 Identities=16% Similarity=0.158 Sum_probs=320.1
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhch------hccCCCC
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT------ISLKPDW 78 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~ 78 (570)
.....++...+-+|.+++..|+|..|....+.- .++..+....+..+.|+....+|++|+..+... +..+|.+
T Consensus 43 ~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 43 AGLTNDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred HhccCChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 334467777888999999999999998888775 666677888999999999999999999998833 1112221
Q ss_pred -------------------hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccccc
Q psy3014 79 -------------------PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANL 139 (570)
Q Consensus 79 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (570)
....+.+|.+|..+.+.++|...|.+++..++.+.++...+.......... .+
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~E-----e~--- 193 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQE-----EF--- 193 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhH-----HH---
Confidence 234678899999999999999999999999999988877665544331000 00
Q ss_pred CCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCC
Q psy3014 140 FSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPS 219 (570)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (570)
.++..+... . . ...... .+..+..........
T Consensus 194 ----~ll~~l~~a---~--~-~~ed~e-----------------------~l~~lyel~~~k~~n--------------- 225 (611)
T KOG1173|consen 194 ----ELLESLDLA---M--L-TKEDVE-----------------------RLEILYELKLCKNRN--------------- 225 (611)
T ss_pred ----HHHhcccHH---h--h-hhhHHH-----------------------HHHHHHHhhhhhhcc---------------
Confidence 000000000 0 0 000000 000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----------------------
Q psy3014 220 PKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD---------------------- 277 (570)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------- 277 (570)
+.. .....+..+..-..+.+.....+..++..++|.+..+.++..++.+
T Consensus 226 ------~~~---~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~ 296 (611)
T KOG1173|consen 226 ------EES---LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNK 296 (611)
T ss_pred ------ccc---cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccch
Confidence 000 0000001122223567777888888889999999988888887764
Q ss_pred ------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 278 ------------PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 278 ------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
|+.+..|+..|..|...|++.+|.++|.++..++|.+ ..+|...|..+...|+.++|+.+|.+|-
T Consensus 297 Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 297 LFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 4555678889999999999999999999999999999 9999999999999999999999999999
Q ss_pred cccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----C---
Q psy3014 346 SEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP----D--- 410 (570)
Q Consensus 346 ~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~--- 410 (570)
+..+. +-.+..++++..|...+..+..+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .
T Consensus 374 rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 374 RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred HhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 88776 33455678899999999999999999999999999999999999999999999984322 1
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
-...+.++|.++.+++.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.++|.++|+|..+...|+.+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 23468999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HH
Q psy3014 491 IA 492 (570)
Q Consensus 491 ~~ 492 (570)
..
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 65
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-26 Score=202.39 Aligned_cols=393 Identities=17% Similarity=0.182 Sum_probs=284.8
Q ss_pred hhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 47 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
.+-+.|.-+++.|+|++|+++|.+||++.|+.+..|-+++-||...|+|++-++...++++++|+...++...+..+...
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 45578889999999999999999999999999999999999999999999999999999999999999999999998885
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhcc--C---ccHHHHHHHHhcCcccC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLK--D---PRMMTTLSVLLGVNMSS 201 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 201 (570)
++..++.....-+.-..++ ......+.....++.... ......+. . -.....+....+.....
T Consensus 197 g~~~eal~D~tv~ci~~~F----------~n~s~~~~~eR~Lkk~a~--~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGF----------QNASIEPMAERVLKKQAM--KKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred ccHHHHHHhhhHHHHhhhc----------ccchhHHHHHHHHHHHHH--HHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 5555443322211100000 000000001111111000 00001111 0 01111122222221110
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcC-
Q psy3014 202 TMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK---KKNFEEALAHYNKAVEFD- 277 (570)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~- 277 (570)
..... .. .. +.+++...-+.-... ...|.+|...+.+.....
T Consensus 265 ~~~~~-----------------~~------~~-----------~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~ 310 (606)
T KOG0547|consen 265 PKPLF-----------------DN------KS-----------DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSE 310 (606)
T ss_pred ccccc-----------------cC------CC-----------ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhh
Confidence 00000 00 00 001111111111122 236788888777765432
Q ss_pred ---CCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 278 ---PTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 278 ---p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
..+ ..++...|..++-.|++-.|.+.++.+++++|.+ ...|..+|.+|...++.++....|.++.
T Consensus 311 ~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 311 SSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---NSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 122 5778889999999999999999999999999998 7779999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425 (570)
Q Consensus 346 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 425 (570)
. ++|.++++|+..|++++-.+++++|+.-|++++.++|++.-.+..++.+.+++
T Consensus 388 ~--------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 388 D--------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred h--------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCCH--
Q psy3014 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS------NAEAVEGYRQCSIAVSSNP-- 497 (570)
Q Consensus 426 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~-- 497 (570)
++++++...|+.+....|+.++++...|.++..+++|++|++.|.+|+++.|. ++..+.+-+.+..+-...-
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999 7777666666665543322
Q ss_pred --HHHHHHHcCCchHHHhh
Q psy3014 498 --EEVRKRAMGDPEVQQIL 514 (570)
Q Consensus 498 --e~~~~~~~~~p~~~~~~ 514 (570)
+-+.+.+..||......
T Consensus 522 a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 522 AENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHHHccCchHHHHH
Confidence 22234445677665443
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-25 Score=211.02 Aligned_cols=358 Identities=16% Similarity=0.149 Sum_probs=243.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..++.+..++..|+.++..|++++|...+.++|+.+|.++.+|+.||.+|..+|+.++|+...-.|-.++|++.+.|..+
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
+....++|++.+|.-+|.+|++.+|.+....+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~------------------------------------------------ 245 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIY------------------------------------------------ 245 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHH------------------------------------------------
Confidence 99999999999999999999999998865544
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
T Consensus 246 -------------------------------------------------------------------------------- 245 (895)
T KOG2076|consen 246 -------------------------------------------------------------------------------- 245 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
..+.++.+.|+...|...|.+++...|.. .......+..+...++-+.|++.++.++....+- .....
T Consensus 246 ------ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~-~~~ed 318 (895)
T KOG2076|consen 246 ------ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE-ASLED 318 (895)
T ss_pred ------HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ccccH
Confidence 34566667899999999999999999832 1223445677778888899999999998732221 11455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHH---HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR---TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..++.++.....++.|..............+.. ....+-..-...+..-....++-+.....++.+..+.++..++
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence 6778889999999999988876655411110000 0000000000000000001111122244444444455555555
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNP-DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+..+..--...| +.++.+..++.++...|++.+|+.++..+....+. +...|+.+|.||..+|.+++|+++|++++.+
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444433222222 23455666666666666666666666665554432 3445566666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 476 DASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 476 ~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++.+++..|+.++.++|+..+
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHH
Confidence 66666666666666666665443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=197.39 Aligned_cols=443 Identities=16% Similarity=0.143 Sum_probs=327.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-----ChhHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-----WPKGY 82 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 82 (570)
....++.++..|.....+.+|+..|+-.++. .|+......++|.++++..+|.+|+++|+.++..-|. ....+
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3567899999999999999999999988764 5888888999999999999999999999999988886 34667
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhh-----hCCCCCC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQ-----LDPRTKP 157 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 157 (570)
.+.|..+.+.|+|+.|+..|+.+++..|+...++... .++...++.+.-...+.+++..|.....-. .+|....
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~-i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLI-ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhh-hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 8889999999999999999999999999876655433 333332333333333444333222211110 0000000
Q ss_pred ---CCCChHHHHHHHHHhhCch--------------------------------------------hHHhhccCccHHHH
Q psy3014 158 ---FLSDPSYVQMIKEIQKDPS--------------------------------------------LMTTKLKDPRMMTT 190 (570)
Q Consensus 158 ---~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 190 (570)
.+....+.+..+.-....+ ....++.+......
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 0000001111110000000 00111111111111
Q ss_pred HHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH--ccCHHHHHH
Q psy3014 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK--KKNFEEALA 268 (570)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~ 268 (570)
.+.+.-.. -..+.....+-.++..+++. -.++..|..
T Consensus 439 ieilkv~~-----------------------------------------~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 439 IEILKVFE-----------------------------------------KKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred HHHHHHHH-----------------------------------------hccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11110000 00011222333444444444 346788888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
+-..++.++..++.++.+.|.+-+..|++++|.+.|+.++..+... .++++++|..+..+|+.++|+.+|-+....-
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---TEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999999999999999999888888 8999999999999999999999988765533
Q ss_pred CC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 349 RT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420 (570)
Q Consensus 349 ~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 420 (570)
.+ ..++..+.+..+|++.+-++...-|+++.++..+|.+|-+.|+-.+|..++-......|.+.+..-.+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 22 3456667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 421 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
.|....-+++|+.+|+++--+.|+........+.|+.+.|+|+.|.+.|+..-...|.+.+.+.-|.++...+|-.+
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988744
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-24 Score=215.55 Aligned_cols=392 Identities=12% Similarity=0.002 Sum_probs=294.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|..+...+..+.+.+++|+++.|+..|+++++.+|+++.....++.++...|+.++|+..+++++.-.|........+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 35578899999999999999999999999999999999655448888999999999999999999933344444444558
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..|+++++.+|+++.++..++.++...+....+...+.++.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-------------------------- 163 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA-------------------------- 163 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------
Confidence 899999999999999999999999999999888777665211111111111110
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
...|..
T Consensus 164 --------------------------------------------------------------------------~~dp~~ 169 (822)
T PRK14574 164 --------------------------------------------------------------------------ERDPTV 169 (822)
T ss_pred --------------------------------------------------------------------------ccCcch
Confidence 011121
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH----------------------
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY---------------------- 304 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---------------------- 304 (570)
.. +..++.++...++..+|+..++++++.+|++..++..+..++...|-...|.+..
T Consensus 170 ~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 170 QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 11 2344555555777777999999999999999888877777766665554444333
Q ss_pred --------------------------HHHhhc---ccCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC---C-
Q psy3014 305 --------------------------IQKIEN---RADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR---T- 350 (570)
Q Consensus 305 --------------------------~~~l~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~- 350 (570)
++.+.. .|.. +....+....-.++...|++.+++..|+....... .
T Consensus 249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 333331 1211 11133444555667778888888888888775442 2
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------
Q psy3014 351 -----PEIRTLISEMEKKIKEEEKKAYIDP------VKAEEAKERGNELFKNGKYADAVKEYTEAINRNP---------- 409 (570)
Q Consensus 351 -----~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---------- 409 (570)
++.+...++.++|...+..++...| ........+...+...+++++|..++++..+..|
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~ 408 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG 408 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence 3455666778889999988877542 2334456788888999999999999999887444
Q ss_pred -----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 410 -----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 410 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+...+...++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+..
T Consensus 409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 234577788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHH
Q psy3014 485 GYRQCSIAVSSNPEE 499 (570)
Q Consensus 485 ~l~~~~~~~~~~~e~ 499 (570)
.++.+...+++..++
T Consensus 489 ~~~~~al~l~e~~~A 503 (822)
T PRK14574 489 AQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHhhhhHHHH
Confidence 999999999986654
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=194.21 Aligned_cols=323 Identities=25% Similarity=0.382 Sum_probs=268.8
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhH
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (570)
......++.....|..++...+|.+|+..|..|++..|+++..|.+.+.+++..|++++|+-..++.++++|..+..+..
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.+.|+..+++..+|...++ +..+. ..+..+.. +..+.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~--------~~~~~-~~anal~~----------~~~~~------------------------ 159 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLK--------SKQAY-KAANALPT----------LEKLA------------------------ 159 (486)
T ss_pred hhhhhhhhHHHHHHHHHhh--------hhhhh-HHhhhhhh----------hhccc------------------------
Confidence 9999999999999998887 11111 00000000 00000
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
......|
T Consensus 160 -------------------------------------------------------------------------~s~s~~p 166 (486)
T KOG0550|consen 160 -------------------------------------------------------------------------PSHSREP 166 (486)
T ss_pred -------------------------------------------------------------------------ccccCCc
Confidence 0000012
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.-..+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|++.....
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~----- 241 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS----- 241 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh-----
Confidence 334455567888888999999999999999999999999999999999999999999999999999998721111
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.+ ..|.....+...|.-.++.|++.+|.++|..+
T Consensus 242 ---------------~~-------------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 242 ---------------AS-------------------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred ---------------Hh-------------------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 11 44556667888899999999999999999999
Q ss_pred HhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 405 INRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 405 l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
|.++|++ ...|.++|.+..++|+..+|+..++.++.++|....++...|.|+..+++|++|+++|+++++...+ .
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~ 354 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C 354 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Confidence 9999985 5579999999999999999999999999999999999999999999999999999999999999877 7
Q ss_pred HHHHHHHHHHHHhcC
Q psy3014 481 EAVEGYRQCSIAVSS 495 (570)
Q Consensus 481 ~~~~~l~~~~~~~~~ 495 (570)
+....+..+...+.+
T Consensus 355 e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 355 EIRRTLREAQLALKK 369 (486)
T ss_pred chHHHHHHHHHHHHH
Confidence 777777777777765
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-23 Score=181.47 Aligned_cols=374 Identities=16% Similarity=0.132 Sum_probs=250.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC---HHHH----------------HHHHhchhc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKA----------------LEDAEKTIS 73 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A----------------~~~~~~al~ 73 (570)
..+.+|..++....|+.|.-.++.... +. .++..-.+.+-.|. -++- +..+.+-++
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s--~k---~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le 154 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS--KK---SAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLE 154 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch--HH---HHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHH
Confidence 457789999999999999999888743 22 12211112111111 1111 112222221
Q ss_pred c----CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHh
Q psy3014 74 L----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQL 149 (570)
Q Consensus 74 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
. ...++..++..|.++.+.|....|+..|..++...|-+-.+|..|..+...... ...+
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~-----------------~~~l 217 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI-----------------LSIL 217 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH-----------------HHHH
Confidence 1 123577889999999999999999999999999999999999988877654100 0000
Q ss_pred hh-CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 150 QL-DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
.. .+..
T Consensus 218 ~~~l~~~------------------------------------------------------------------------- 224 (559)
T KOG1155|consen 218 VVGLPSD------------------------------------------------------------------------- 224 (559)
T ss_pred HhcCccc-------------------------------------------------------------------------
Confidence 00 0000
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-DPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
...-.-+.++.++......++++.-++..+.. .|.+...-...|.+.....++++|+..|+.+
T Consensus 225 ----------------~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 225 ----------------MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 00111122344444444555555555555555 5555555555555555555555665555555
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--cCC------HHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE--HRT------PEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
.+.+|-. ..-.-....++.-.++-.+-.-.-..+... .+. +..+...++.++|+..|++++..+|....
T Consensus 289 ~knDPYR---l~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~ 365 (559)
T KOG1155|consen 289 RKNDPYR---LDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS 365 (559)
T ss_pred HhcCCCc---chhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH
Confidence 5555533 111222222222222111111111111111 111 33444445555555555555559999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+|..+|.-|..+++...|+..|+.|++++|.+..+|+.+|..|.-++...=|+-+|++|+...|+++..|..+|.||.++
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++.++|+++|.+++.....+..++..|++++.++++..+++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999966644
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=192.14 Aligned_cols=298 Identities=18% Similarity=0.205 Sum_probs=264.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+-+...+.+.+..++..++..++|.+-.+.++..++.+|-++.++-..-.|+..+|+..+=...-.+.++..|+.+-.|
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW 315 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSW 315 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcch
Confidence 34456678899999999999999999999999999999999887765444499999999998889999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
+..|..|...|++.+|.++|.++..++|....+|.++
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f------------------------------------------- 352 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF------------------------------------------- 352 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999887777654
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
T Consensus 353 -------------------------------------------------------------------------------- 352 (611)
T KOG1173|consen 353 -------------------------------------------------------------------------------- 352 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
|..+...|..++|+.+|..|-++.|........+|.-|.+.++++-|.+.|.+++.+.|.+ +-++.
T Consensus 353 -----------ghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D---plv~~ 418 (611)
T KOG1173|consen 353 -----------GHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD---PLVLH 418 (611)
T ss_pred -----------hHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---chhhh
Confidence 5555558899999999999999999998889999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.+.+..+.|.+|..+|+.++...+. .....+.-...+.++|.++.+.+.+++|+.+|+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~-------------------~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKS-------------------VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhh-------------------ccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999842111 000122234568899999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
+++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+--.|+.+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999977666666443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-22 Score=201.88 Aligned_cols=408 Identities=11% Similarity=0.038 Sum_probs=279.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 344555557777777888888888888888888877777777777777788888888888887777775444 5556666
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH-----
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY----- 164 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 164 (570)
...++..+|+..|+++++.+|++.++...+..+....+....+.+. ....| .++...+.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l-------------~~~~p---~~f~~~~~~~l~~ 243 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL-------------AKENP---NLVSAEHYRQLER 243 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH-------------HHhCc---cccCHHHHHHHHH
Confidence 5566666688888888888888777776666665552222111110 01111 11111111
Q ss_pred HHHHHHHhhC--ch-h-HHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 165 VQMIKEIQKD--PS-L-MTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 165 ~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
..+...+... +. . ...+....+....+..++...... |
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~------------------------------p-------- 285 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD------------------------------P-------- 285 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC------------------------------C--------
Confidence 1111111111 00 0 000000001111111111100000 0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KL 316 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 316 (570)
...+..-.+....-.++...|++.+++..|+...... |-...+....|..|+..++.++|+.+|.+++...|+. +.
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 0011233455566667788999999999999987655 3456688899999999999999999999998765321 00
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
.......|...|...+++++|..++++.....|. .+. ..+.. .-..+|+..+....++.++...|++.+
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~~~-~~~~~---------~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-QVG-VYGLP---------GKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-EEe-ccCCC---------CCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 1333567888999999999999999999875441 000 00000 000566778888899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
|.+.+++.+...|.++.++..+|.++...|.+..|...++.+..++|++..+...+|.++..+|++.+|.....++++..
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHH
Q psy3014 477 ASNAEAV 483 (570)
Q Consensus 477 p~~~~~~ 483 (570)
|+++.+.
T Consensus 515 Pe~~~~~ 521 (822)
T PRK14574 515 PEDIPSQ 521 (822)
T ss_pred CCchhHH
Confidence 9999665
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=192.94 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=259.3
Q ss_pred CchhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChh
Q psy3014 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 1 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
+|.+.+.|..+.+|+.+|.+|-++|+.+++...+-.|-.++|++...|..++....++|++..|.-+|.+||+.+|.+..
T Consensus 163 ~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 163 MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
..+.++.+|.++|+...|...|.+++...|. .+.......+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i-------------------------------------- 283 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI-------------------------------------- 283 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH--------------------------------------
Confidence 9999999999999999999999999999992 2221111111
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 284 -------------------------------------------------------------------------------- 283 (895)
T KOG2076|consen 284 -------------------------------------------------------------------------------- 283 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--cccCh--
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--NRADF-- 314 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~-- 314 (570)
...+..+...++-+.|++.++.++.. +-....-+..++.+++....++.|......... ..+++
T Consensus 284 ----------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 284 ----------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred ----------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 12345555566667788888877773 222344556777778888888888777665543 11111
Q ss_pred ----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc
Q psy3014 315 ----------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372 (570)
Q Consensus 315 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 372 (570)
..+..+...++.+..+.++..+++..+-.--..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~------------------------- 408 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV------------------------- 408 (895)
T ss_pred hhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-------------------------
Confidence 011112444444444555555554444322210
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
...+.++.+..++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 12345778888999999999999999999988877553 46789999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHhcCC
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDAS---------NAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~ 496 (570)
++.++.++|+.++|.+.+++...-||. +..+......++...|+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999999998887644422 234456677777777773
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-21 Score=178.33 Aligned_cols=371 Identities=13% Similarity=0.078 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.-..|..-+..+...+-++-|+..|..+|+..|.....|...+..-...|..++-...+++++...|.....|+..+..+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 34578888899999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
...|+...|...+.++++.+|++.++|..-..+...... +..+..
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e-----------------------------------~eraR~ 639 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE-----------------------------------LERARD 639 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-----------------------------------HHHHHH
Confidence 999999999999999999999999988765555433110 000000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
. +...... ......
T Consensus 640 l--------------------lakar~~----------------------------------------------sgTeRv 653 (913)
T KOG0495|consen 640 L--------------------LAKARSI----------------------------------------------SGTERV 653 (913)
T ss_pred H--------------------HHHHhcc----------------------------------------------CCcchh
Confidence 0 0000000 023456
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
|+.-+.+..-+++.++|+.+++++++..|+....|..+|.++..+++.+.|...|...++..|.. ...|..++.+-.
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~---ipLWllLakleE 730 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS---IPLWLLLAKLEE 730 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---chHHHHHHHHHH
Confidence 66677777788889999999999999999999999999999999999999999999999999988 888888888888
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
..|..-.|...++++.- .+|.+...|.....+-++.|+.+.|.....+|++..|
T Consensus 731 k~~~~~rAR~ildrarl--------------------------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARL--------------------------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HhcchhhHHHHHHHHHh--------------------------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888887 7888888888888888889999999999999998888
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++...|..--.+.-+-++-..++..+++ ...++.++...|..+....++++|.++|.++++.+|++.++|..+-..
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkk----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKK----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 8887777666655555555555544443 466777888888888888888888888888888888888888888888
Q ss_pred HHHhcCCH--HHHH-HHHcCCchHHHhh
Q psy3014 490 SIAVSSNP--EEVR-KRAMGDPEVQQIL 514 (570)
Q Consensus 490 ~~~~~~~~--e~~~-~~~~~~p~~~~~~ 514 (570)
....|... ..++ .....+|..-..+
T Consensus 861 el~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 88888533 2232 2233455544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-25 Score=199.96 Aligned_cols=186 Identities=24% Similarity=0.326 Sum_probs=97.1
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR--ADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
..+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +++ +..+..+|.++.+.|++++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS---ARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T----HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCCHHH
Confidence 45667777777776666543 35555666666777777777777777765433 333 6677777777777777777
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 416 (570)
|+..|++++. .+|+++.+...++.++...|+++++...+....+..|+++..+.
T Consensus 165 A~~~~~~al~--------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (280)
T PF13429_consen 165 ALRDYRKALE--------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD 218 (280)
T ss_dssp HHHHHHHHHH--------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH
T ss_pred HHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH
Confidence 7777777777 67777777777777777777777777777777666677777777
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|..++++++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7777777777777777777777777777777777777777777777777777777664
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=190.18 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=218.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++ ..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---leaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---LEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHH---------------HHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPE---------------IRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFKNGK 393 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 393 (570)
.|.-.+|+.++.+.+...+... .......+..-.+.|-.+....| .++++...||.+|...|+
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999999999999987664411 11122234444555666666677 789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
|++|+.||+.|+...|++...|+.||..+....+.++|+..|.+|+++.|.+..+++++|..+..+|.|++|.++|-.||
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC----------cHHHHHHHHHHHHHhcCCH
Q psy3014 474 ELDAS----------NAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 474 ~~~p~----------~~~~~~~l~~~~~~~~~~~ 497 (570)
.+.+. +..+|..|..++..+++.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 98765 2358888888888887754
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=176.79 Aligned_cols=333 Identities=19% Similarity=0.264 Sum_probs=257.6
Q ss_pred hchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q psy3014 49 SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128 (570)
Q Consensus 49 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 128 (570)
...|...+..|+|+.|+.+|..+|.++|.+...|-++..+|..+|+|++|++.-.+.++++|+.+..+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy------------ 73 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY------------ 73 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH------------
Confidence 34678889999999999999999999999999999999999999999999999999999999765544
Q ss_pred ccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
T Consensus 74 -------------------------------------------------------------------------------- 73 (539)
T KOG0548|consen 74 -------------------------------------------------------------------------------- 73 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIA 288 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 288 (570)
..+|..+.-.|+|++|+..|.+.|+.+|+|.....+++
T Consensus 74 ------------------------------------------~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~ 111 (539)
T KOG0548|consen 74 ------------------------------------------SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLA 111 (539)
T ss_pred ------------------------------------------HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHH
Confidence 45677777789999999999999999999988888887
Q ss_pred HHHHHhcC------------------------HHHHHHHHHHHhhcccCh------------------------------
Q psy3014 289 AVYFERKE------------------------YDQCIEQYIQKIENRADF------------------------------ 314 (570)
Q Consensus 289 ~~~~~~~~------------------------~~~A~~~~~~~l~~~~~~------------------------------ 314 (570)
.++..... .+.+.....+.+..+|.+
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 77622200 011111111111222211
Q ss_pred -----------------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH-------HHHHHHH
Q psy3014 315 -----------------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP-------EIRTLIS 358 (570)
Q Consensus 315 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~ 358 (570)
.........+|.......++..|++.|.+++.+.... .++..++
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERG 271 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhcc
Confidence 1235567888999999999999999999999888332 2334445
Q ss_pred HHHHHHHHHHHHhcCChh-------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------
Q psy3014 359 EMEKKIKEEEKKAYIDPV-------KAEEAKERGNELFKNGKYADAVKEYTEAINRN----------------------- 408 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------- 408 (570)
.+...+.....+++..-. -......+|..+.+.++++.|+.+|.+++...
T Consensus 272 ~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKA 351 (539)
T ss_pred HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443322 23344456778888999999999999987643
Q ss_pred ---CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 409 ---PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 409 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
|.-..--...|..++..|+|..|+..|.++|..+|+++..|.++|.||.++|++..|+...+++++++|++..++..
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 22223344568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH---HHHHHHHcCCchHHHhhc
Q psy3014 486 YRQCSIAVSSNP---EEVRKRAMGDPEVQQILR 515 (570)
Q Consensus 486 l~~~~~~~~~~~---e~~~~~~~~~p~~~~~~~ 515 (570)
-+.++..+.+.+ +...+.+..||...++..
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~ 464 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAID 464 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 999999999844 444566677888776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-21 Score=187.18 Aligned_cols=303 Identities=9% Similarity=0.006 Sum_probs=242.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh-hHHhHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-KGYSRKGS 87 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 87 (570)
..+......|...+..|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 35667788899999999999999999999999888777788889999999999999999999999888875 56666799
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|...++++++..|+++.++..
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l------------------------------------------------- 192 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKL------------------------------------------------- 192 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------------------------------
Confidence 9999999999999999999999988766543
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
T Consensus 193 -------------------------------------------------------------------------------- 192 (409)
T TIGR00540 193 -------------------------------------------------------------------------------- 192 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHhcCHHHHHHHHHHHhhccc----ChhHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQN----NIAAVYFERKEYDQCIEQYIQKIENRA----DFKLIAK 319 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~ 319 (570)
++.++...|++++|.+.+.+..+..+.++.... ....-....+..+++.+.+.++....| ++ +.
T Consensus 193 -----l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~---~~ 264 (409)
T TIGR00540 193 -----AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN---IA 264 (409)
T ss_pred -----HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC---HH
Confidence 566666789999999999999887554443321 222222445555666677777777766 35 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH--HHHHHHHHHCCCHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA--KERGNELFKNGKYADA 397 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A 397 (570)
.+..++..+...|++++|...++++++ ..|++.... ..........++.+.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~--------------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLK--------------------------KLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh--------------------------hCCCcccchhHHHHHhhhcCCCChHHH
Confidence 888899999999999999999999998 455544321 2233333445778889
Q ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHHhcChHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPDDP--KYYSNRAACYTKLAAFDLGLKDCE--TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 398 ~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
++.++++++.+|+++ .++..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.+.|+.++|.++|++++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999 888899999999999999999999 57778887765 5589999999999999999999986
Q ss_pred hh
Q psy3014 474 EL 475 (570)
Q Consensus 474 ~~ 475 (570)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-24 Score=197.95 Aligned_cols=264 Identities=19% Similarity=0.236 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
..+..|..++..|++++|++.+.+.+.. .|+++..|..+|.+....+++++|+..|++++..+|.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346799999999999999999765544 478888899999999999999999999999999998888888888888 7
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
..+++++|+..++++.+..++ +..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~------------------------------------------------------- 112 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY------------------------------------------------------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cch-------------------------------------------------------
Confidence 889999999988887765542 211
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
+
T Consensus 113 -------------------------------------------------------------------------------l 113 (280)
T PF13429_consen 113 -------------------------------------------------------------------------------L 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------h
Confidence 2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFD--PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.....++...++++++...++++.... |.++.+|..+|.++.+.|++++|+..++++++.+|++ ..+...++.++
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~l 190 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLL 190 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Confidence 224456677899999999999987655 6789999999999999999999999999999999999 88999999999
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|+.+++...++.... ..|.++..+..+|.++...|++++|+.+|+++++.+
T Consensus 191 i~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLK--------------------------AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp CTTCHHHHHHHHHHHHHH--------------------------H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHH--------------------------HCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999999888888877 557778889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
|+++..+..+|.++...|+.++|..++.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999988753
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=173.19 Aligned_cols=331 Identities=15% Similarity=0.084 Sum_probs=274.0
Q ss_pred HHHHccCCCCcchhh---chhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCC
Q psy3014 35 SEAIKLDGTNHILFS---NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 35 ~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 111 (570)
..++..+|..++.+. ..|.|+....-+..+..++-.-...-|+|...+..+|.+++..|++.+|+-.|+++..++|.
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 345566776655543 34555555555666677777778888999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHH
Q psy3014 112 NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTL 191 (570)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
+.......+.++...++...... ..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~-------------------------------------------------------L~ 289 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSA-------------------------------------------------------LM 289 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHH-------------------------------------------------------HH
Confidence 88887777766655222111000 00
Q ss_pred HHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy3014 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYN 271 (570)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 271 (570)
..++.+ ....+.-|+--|...+..+++..|+.+-+
T Consensus 290 ~~Lf~~---------------------------------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 290 DYLFAK---------------------------------------------VKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HHHHhh---------------------------------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 011110 01234556777888899999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH
Q psy3014 272 KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP 351 (570)
Q Consensus 272 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 351 (570)
++|..+|.+..++...|.++...|+.++|+-.|+.+..+.|.. .++|..+-.+|...|++.+|...-+.++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---L~~Y~GL~hsYLA~~~~kEA~~~An~~~~----- 396 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---LEIYRGLFHSYLAQKRFKEANALANWTIR----- 396 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---HHHHHHHHHHHHhhchHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChH
Q psy3014 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG-NELFKN-GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429 (570)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 429 (570)
.-|.++.++..+| .+++.. .--++|.+.+++++.+.|....+-..+|.++...|.++
T Consensus 397 ---------------------~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 397 ---------------------LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred ---------------------HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 6777888888886 555433 33578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 430 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.++..+++.+...|++ ..+..+|.++...+.+++|+++|..|+.++|++..+..++..+......
T Consensus 456 D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 9999999999998875 4788999999999999999999999999999999999999988887775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=197.30 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHhhcccC
Q psy3014 246 SAKKEKELGNEAYKK---KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK---------EYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 246 ~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~ 313 (570)
++..++..|..+... +.+++|+.+|+++++++|+++.++..+|.++...+ ++++|+..++++++.+|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 344456666655433 45789999999999999999999999999887543 489999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
+ +.++..+|.++...|++++|+..|++++. .+|+++.+++.+|.++...|+
T Consensus 337 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--------------------------l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 337 N---PQALGLLGLINTIHSEYIVGSLLFKQANL--------------------------LSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred C---HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHCCC
Confidence 9 99999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-PKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|...+.++
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 9999999999999999998887778888888999999999999999875 788999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhcCCHHHHHHHHcC-----------CchHHHhhcCHHHHHHHHHhhcC-HHHHHHhhcCH
Q psy3014 473 LELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMG-----------DPEVQQILRDPAMRLILEQMQND-PRALSDHLKNP 540 (570)
Q Consensus 473 l~~~p~~~~~~~~l~~~~~~~~~~~e~~~~~~~~-----------~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 540 (570)
....|++..++..++..+...|+.....+..+.. +|.+....+|+.+..+..++.++ ......+..||
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 547 (553)
T PRK12370 468 STQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDP 547 (553)
T ss_pred hhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccchHhhhhhhcCc
Confidence 9999999999999999999988754443333322 34555556666666666665543 33333344455
Q ss_pred H
Q psy3014 541 E 541 (570)
Q Consensus 541 ~ 541 (570)
.
T Consensus 548 ~ 548 (553)
T PRK12370 548 R 548 (553)
T ss_pred h
Confidence 4
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=170.66 Aligned_cols=295 Identities=15% Similarity=0.171 Sum_probs=255.3
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+|.+..-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR---- 109 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR---- 109 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH----
Confidence 4556777899999999999999999999999999999999999999999999999999999999999999765443
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
T Consensus 110 -------------------------------------------------------------------------------- 109 (504)
T KOG0624|consen 110 -------------------------------------------------------------------------------- 109 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
...|.+++++|.+++|...|+.++..+|++
T Consensus 110 --------------------------------------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 110 --------------------------------------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred --------------------------------------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 246888889999999999999999999965
Q ss_pred H---HHH------------HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3014 281 I---TFQ------------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345 (570)
Q Consensus 281 ~---~~~------------~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 345 (570)
. ++. ......++..|++..|+......+++.|-+ +..+...+.||...|+...|+..++.+-
T Consensus 140 ~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---a~l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 140 GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---ASLRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---hHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3 222 223344566799999999999999999998 8999999999999999999999999998
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH--------
Q psy3014 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN-------- 417 (570)
Q Consensus 346 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 417 (570)
+ +..++.+.++.++.+++..|+.+.++...+++++++|++-..+-.
T Consensus 217 k--------------------------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 217 K--------------------------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred h--------------------------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 8 788899999999999999999999999999999999987543221
Q ss_pred ----HHHHHHHhcChHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 418 ----RAACYTKLAAFDLGLKDCETCLKLDPKFLKG----WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 418 ----la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
-+.-....++|.++++..++.++.+|..+.. +..+-.|+..-|++.+|+.....+++++|++..++...+.+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1344567788999999999999999985543 34467888999999999999999999999999999999888
Q ss_pred HHHhcCCHH
Q psy3014 490 SIAVSSNPE 498 (570)
Q Consensus 490 ~~~~~~~~e 498 (570)
+..-...++
T Consensus 351 ~l~dE~YD~ 359 (504)
T KOG0624|consen 351 YLGDEMYDD 359 (504)
T ss_pred HhhhHHHHH
Confidence 876655443
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-21 Score=182.21 Aligned_cols=398 Identities=12% Similarity=0.067 Sum_probs=257.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccC--CCChhHHhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--PDWPKGYSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 86 (570)
.++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|....|+...+..+... |+++..+..-+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566777777777788888888888888877766667778888888888888888888888887777 66665555544
Q ss_pred H-HHhhccCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 87 S-ALSYLGRYKESISTYEEGLKLDPN-----NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 87 ~-~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
. |....|.+++++.+-.+++..... .+..+..++..|....... ......
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a-~~~seR----------------------- 456 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA-NLKSER----------------------- 456 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC-CChHHH-----------------------
Confidence 4 445677788888888887774321 1223333333332200000 000000
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
+...... ...+ ++.+
T Consensus 457 ~~~h~ks--------------------lqal---------------------------------------------e~av 471 (799)
T KOG4162|consen 457 DALHKKS--------------------LQAL---------------------------------------------EEAV 471 (799)
T ss_pred HHHHHHH--------------------HHHH---------------------------------------------HHHH
Confidence 0000000 0000 1111
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
..+|.++.+.+.++.-|..+++.+.|.....++++.+ -+++.+|..++.++...+++.+|+.....++...|++ ..
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N---~~ 548 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN---HV 548 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh---hh
Confidence 1223455666666666666666666666666666663 3446666666666666666666666666666666655 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----------HHH-------HHHHHHHHHHHHHHHHH--------hc--
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT----------PEI-------RTLISEMEKKIKEEEKK--------AY-- 372 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~-------~~~~~~~~~a~~~~~~~--------~~-- 372 (570)
.......+-...++.++|+..+...+..-.. ... .....+..++++....+ ..
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 3333334444455555555555444432210 000 00000001111111110 00
Q ss_pred -----------CChh-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 -----------IDPV-----KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 -----------~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
..|. ....|...+..+...+..++|..++.++-.++|..+..|+..|.++...|++.+|.+.|.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 1111 234667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAID--AYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.++.++|+++.+...+|.++.+.|+..-|.. .+..++++||.|+++|+.+|.+..++|+..+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999999999999999888888 9999999999999999999999999999654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-22 Score=196.69 Aligned_cols=254 Identities=11% Similarity=-0.035 Sum_probs=190.6
Q ss_pred cCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc---------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL---------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 59 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
+.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|++..++..++.++..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~---- 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI---- 350 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Confidence 4567888888888888888888888888776643 337788888888888888888888777665544
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
T Consensus 351 -------------------------------------------------------------------------------- 350 (553)
T PRK12370 351 -------------------------------------------------------------------------------- 350 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
.|++++|+..|+++++++|+++.+++.+|.
T Consensus 351 --------------------------------------------------~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 351 --------------------------------------------------HSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred --------------------------------------------------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 577888888888888888888888888888
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
++...|++++|+..++++++++|.+ ...+..++.++...|++++|+..+++++..
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~---------------------- 435 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQ---------------------- 435 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHh----------------------
Confidence 8888888888888888888888887 555555666677778888888888887761
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..|..+..+..+|.++...|++++|...+.++....|....++..++..|...|+ .|...+++.++.....+...
T Consensus 436 ---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 436 ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP 510 (553)
T ss_pred ---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc
Confidence 2366777788888888888888888888888877777777788888888877774 66666666555433322223
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.....++.-.|+.+.|..+ +++.+.++
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 3367777777887777777 66665543
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=176.81 Aligned_cols=410 Identities=16% Similarity=0.219 Sum_probs=291.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
..+|++++++.+|.+|+++|+.++..-|.- ...+.++|..+.+.|+|+.|+..|+.+++..|+... -+++-.|+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~ 319 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICA 319 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhh
Confidence 467999999999999999999999998862 467889999999999999999999999999998655 45678899
Q ss_pred hhccCHHHHHHHHHHhhccC--------------CCcHHHHHHHHHHHHHhhhccCCCc------cccccCC---CchH-
Q psy3014 90 SYLGRYKESISTYEEGLKLD--------------PNNEQMKEAIKDVRNQEMNDMNRGD------PFANLFS---DPNI- 145 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~---~~~~- 145 (570)
+..|+-++-.+.|.+.+.+- |++.-....+..-...+........ ...+++. .+.+
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 99999999999999998652 2211111111111111011100000 0000000 0000
Q ss_pred ------HHHhhhCCC-----------CCCCCCChHHHHHHHHHh---hCch-hHHhhccCccHHHHHHHHh-cCcccCCC
Q psy3014 146 ------FVQLQLDPR-----------TKPFLSDPSYVQMIKEIQ---KDPS-LMTTKLKDPRMMTTLSVLL-GVNMSSTM 203 (570)
Q Consensus 146 ------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 203 (570)
...+..... .-.++...++..++..+. .... ..... ......+..+. |..+..
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa---a~nl~~l~flqggk~~~~-- 474 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA---ANNLCALRFLQGGKDFAD-- 474 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH---hhhhHHHHHHhcccchhH--
Confidence 000100000 001222233333333221 1100 00000 00001111111 111000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 204 GDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITF 283 (570)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (570)
+....+..+..+..++.++.+.|.+.+..|++++|.+.|++++..+.....+
T Consensus 475 ----------------------------aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 475 ----------------------------AQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ----------------------------HHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 1111122333344677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC-HHHHHHH-----
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT-PEIRTLI----- 357 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~----- 357 (570)
++++|..+..+|+.++|+++|-+.-.+--++ +++++.++.+|..+.+..+|++++-++...-|+ +.++..+
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999987777677 899999999999999999999999999988776 4444444
Q ss_pred --HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 358 --SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 358 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
|+-.+|..++-......|.+.++..-+|..|....-+++|+.+|+++--+.|+........+.|+.+.|+|.+|.+.|
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 455677777777777899999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+..-...|.+.+.+-.+.++.-.+|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999988888877763
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=174.65 Aligned_cols=288 Identities=13% Similarity=0.105 Sum_probs=238.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CC-------CcchhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD---GT-------NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
|.-+.++++ .+++...+...|-......++.+ |. +.+....+|.||+++|.+.+|.+.++.+++..|
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 344445553 35566777888777666666543 21 233446789999999999999999999999886
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
.++.+..++.+|....++..|+..|...++..|.+.......
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~-------------------------------------- 296 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ-------------------------------------- 296 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh--------------------------------------
Confidence 478899999999999999999999999999999877665544
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 297 -------------------------------------------------------------------------------- 296 (478)
T KOG1129|consen 297 -------------------------------------------------------------------------------- 296 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
+.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|.+++++.-.+
T Consensus 297 ----------------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--- 357 (478)
T KOG1129|consen 297 ----------------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--- 357 (478)
T ss_pred ----------------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---
Confidence 4445557889999999999999999999999889999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
++.+.++|.|+...++++-++..|.+++.... .....+++|+++|.+....|++.-|
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----------------------~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----------------------QPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----------------------CcchhhhhhhccceeEEeccchHHH
Confidence 88999999999999999999999999987543 2234578899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..+-...|...+..++++.+-.+
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 9999999999999999999999999999999999999999999999888777777654433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-20 Score=177.07 Aligned_cols=300 Identities=9% Similarity=0.047 Sum_probs=237.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch-hHHHhcccCHHHHHHHHhchhccCCCChhH-HhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR-SAAFAKEGNYEKALEDAEKTISLKPDWPKG-YSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la 86 (570)
..+...+..|...+..|+|++|.+...++-...+. +..++.+ +.+....|+++.|..++.++.+.+|++..+ ....+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 45677889999999999999999888876554333 4555545 556699999999999999999999997544 44559
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..++++.+.+|+++.+...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~l------------------------------------------------ 192 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRL------------------------------------------------ 192 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH------------------------------------------------
Confidence 99999999999999999999999998877654
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 193 -------------------------------------------------------------------------------- 192 (398)
T PRK10747 193 -------------------------------------------------------------------------------- 192 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQN--------NIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
++.++...|++++|++.+.+..+..+.++.... .+........+.+...+.++..-+..|++ +
T Consensus 193 ------l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~---~ 263 (398)
T PRK10747 193 ------AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ---V 263 (398)
T ss_pred ------HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC---H
Confidence 445555679999999999999988776544322 11111222233344444444444555667 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.+...++..+...|+.++|...++++++ ..| ++......+.+ ..++.++++
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~--------------------------~~~-~~~l~~l~~~l--~~~~~~~al 314 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLK--------------------------RQY-DERLVLLIPRL--KTNNPEQLE 314 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------cCC-CHHHHHHHhhc--cCCChHHHH
Confidence 8999999999999999999999999987 222 33333333333 459999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
..+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.++|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998654 5689999999999999999999998764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=172.75 Aligned_cols=216 Identities=12% Similarity=0.020 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++ ..++.++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~l 138 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAYLNR 138 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..|++++. .+|+++... ....+....+++++|+..|.++
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~--------------------------~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQ--------------------------DDPNDPYRA-LWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--------------------------hCCCCHHHH-HHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999 677665321 1223345678999999999887
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH-------HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC-------LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+...+... |. .+.++...|+...+ ..++.+ +++.|....+|+.+|.++..+|++++|+.+|+++++.+|
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 75543322 22 35666667776544 233333 355667788999999999999999999999999999996
Q ss_pred -CcHHHHHHHHHHHHHhc
Q psy3014 478 -SNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 478 -~~~~~~~~l~~~~~~~~ 494 (570)
++.+....+..+....+
T Consensus 268 ~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 268 YNFVEHRYALLELALLGQ 285 (296)
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 77777766666655543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=152.93 Aligned_cols=215 Identities=16% Similarity=0.123 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
....+.+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++ .++++
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~---GdVLN 107 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN---GDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc---cchhh
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+.|..++.+|++++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|+
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 99999999999999999999999733 345678899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
++++.+|+++.....++..++..|+|-.|..++++....-+-....+.....+-...|+-+.|-.+=.+.-...|..++.
T Consensus 164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999999999999999999999999998888888888888888899999999999988888999988776
Q ss_pred HH
Q psy3014 483 VE 484 (570)
Q Consensus 483 ~~ 484 (570)
..
T Consensus 244 q~ 245 (250)
T COG3063 244 QT 245 (250)
T ss_pred Hh
Confidence 54
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=168.88 Aligned_cols=213 Identities=12% Similarity=0.064 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
+.+..++.+|.+..++..|+..|.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+ .++...+|.-
T Consensus 257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n---vEaiAcia~~ 333 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN---VEAIACIAVG 333 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc---ceeeeeeeec
Confidence 3445577778888999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
|+..++.+-|+.+|+++++ +...+++.+.++|.+++..++++-++..|++++..
T Consensus 334 yfY~~~PE~AlryYRRiLq--------------------------mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQ--------------------------MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred cccCCChHHHHHHHHHHHH--------------------------hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 9999999999999999999 78889999999999999999999999999999987
Q ss_pred CC--C-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 408 NP--D-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 408 ~p--~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
.. + -.++|+++|.+....|++..|..+|+-++..+|++..++.++|.+-.+.|+.++|..++..|-.+.|+-.+...
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccc
Confidence 43 2 46799999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHH
Q psy3014 485 GYRQC 489 (570)
Q Consensus 485 ~l~~~ 489 (570)
+++.+
T Consensus 468 Nl~~~ 472 (478)
T KOG1129|consen 468 NLQFM 472 (478)
T ss_pred ceeEE
Confidence 76544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-20 Score=177.51 Aligned_cols=295 Identities=11% Similarity=-0.039 Sum_probs=237.5
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDVRNQE 126 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~ 126 (570)
....|......|+++.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..|++.. +.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~---------- 156 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE---------- 156 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH----------
Confidence 3556778889999999999999999999998888899999999999999999999999988887532 21
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDG 206 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (570)
T Consensus 157 -------------------------------------------------------------------------------- 156 (409)
T TIGR00540 157 -------------------------------------------------------------------------------- 156 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN 286 (570)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (570)
...+.++...|++++|...+++.++..|+++.++..
T Consensus 157 --------------------------------------------~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~l 192 (409)
T TIGR00540 157 --------------------------------------------IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKL 192 (409)
T ss_pred --------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 124677778999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhcccChhHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIA-KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
++.++...|++++|.+.+.+..+....++... ........-....+..+++...+.++....|.
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~--------------- 257 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR--------------- 257 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH---------------
Confidence 99999999999999999999997744331111 11122222223334444445566665552111
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY--SNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
..++++..+..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++..|
T Consensus 258 -------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 258 -------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred -------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 2235889999999999999999999999999999999987532 3333344456889999999999999999
Q ss_pred CCH--HHHHHHHHHHHhCCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 444 KFL--KGWIRKGKILQGMQQQSKAIDAYE--KALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 444 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+++ ..+..+|+++.+.|++++|.++|+ ++++.+|++.. ...++.++.++|+..++
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 999 888999999999999999999999 68889998776 55999999999996654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-19 Score=164.56 Aligned_cols=389 Identities=12% Similarity=0.104 Sum_probs=283.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|+.-..++..+.-.+..++|...++..+.+++..|.+++.+...|..+..+|+-++|......++..++.....|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++....+|++|+++|+.|+.++|+|..++..++.+..+..+.....+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~----------------------------- 133 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN----------------------------- 133 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH-----------------------------
Confidence 999999999999999999999999999999999888777322211111000
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
..+...|..
T Consensus 134 -----------------------------------------------------------------------~LLql~~~~ 142 (700)
T KOG1156|consen 134 -----------------------------------------------------------------------QLLQLRPSQ 142 (700)
T ss_pred -----------------------------------------------------------------------HHHHhhhhh
Confidence 111223456
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD---PTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 318 (570)
-..|...+..+...|++..|....+...+.. |+. ..+......+....|..++|.+.+..--..--+. .
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk---l 219 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK---L 219 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH---H
Confidence 6778888888889999999998888877665 332 2344455666777788888877766544333333 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH-----HHHHHH---HHHHHH-HHHHHHhcCChhhHHHHHHHHHHH-
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE-----IRTLIS---EMEKKI-KEEEKKAYIDPVKAEEAKERGNEL- 388 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~---~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~- 388 (570)
......+.++..++++++|...|...+...|+.- ....++ .-.+++ ..|....+..|.. .....++...
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl 298 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVL 298 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHh
Confidence 5666778899999999999999999998888732 112222 122222 3333333322221 0000111000
Q ss_pred ----------------HHCC-------------CHHHHHHHHHHHH-------hcC------------CCC--HHHHHHH
Q psy3014 389 ----------------FKNG-------------KYADAVKEYTEAI-------NRN------------PDD--PKYYSNR 418 (570)
Q Consensus 389 ----------------~~~~-------------~~~~A~~~~~~al-------~~~------------p~~--~~~~~~l 418 (570)
+..| +..+. ..+++.+ .-. |.. .+.++.+
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 1111 11111 1222221 110 212 2456778
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
+..+...|+++.|..+++.|+...|+.++.+...|+++...|+.++|..++..+-++|-.|.-+-...+.-..+.++.++
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 99999999999999999999999999999999999999999999999999999999997777776677777777777655
Q ss_pred HH
Q psy3014 499 EV 500 (570)
Q Consensus 499 ~~ 500 (570)
+.
T Consensus 458 A~ 459 (700)
T KOG1156|consen 458 AE 459 (700)
T ss_pred HH
Confidence 43
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=179.03 Aligned_cols=261 Identities=15% Similarity=0.225 Sum_probs=183.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
+..|..+++.|+..+|+-+|+.+++.+|.+.++|..||.+....++-..|+..+++|++++|++..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
-.+|+.++.+-+...|........ ... ..+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a---------~~~---~~~~------------------------------------- 399 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSA---------GEN---EDFE------------------------------------- 399 (579)
T ss_pred HHHHHHHHHHHHHhCccchhcccc---------Ccc---cccc-------------------------------------
Confidence 999999999999887754321100 000 0000
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
. . +
T Consensus 400 --------------------------------------------------~------~-----~---------------- 402 (579)
T KOG1125|consen 400 --------------------------------------------------N------T-----K---------------- 402 (579)
T ss_pred --------------------------------------------------C------C-----c----------------
Confidence 0 0 0
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDP--TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
.......+..-.+.|-.+....| .+++++..||.+|...|+|++|+.+|+.++...|++ ...|..||-++....
T Consensus 403 -s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 403 -SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---YLLWNRLGATLANGN 478 (579)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---HHHHHHhhHHhcCCc
Confidence 00001112233445555555555 566777777777777777777777777777777776 667777777777666
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD- 411 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 411 (570)
+..+|+..|.+|++ +.|....+++++|..++..|.|.+|+++|-.+|.+.+..
T Consensus 479 ~s~EAIsAY~rALq--------------------------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 479 RSEEAISAYNRALQ--------------------------LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred ccHHHHHHHHHHHh--------------------------cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 77777777777766 666666677777777777777777777777766654431
Q ss_pred ---------HHHHHHHHHHHHHhcChHHH
Q psy3014 412 ---------PKYYSNRAACYTKLAAFDLG 431 (570)
Q Consensus 412 ---------~~~~~~la~~~~~~~~~~~A 431 (570)
..+|-.|=.++..+++.+.+
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 13444444455555555433
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=184.59 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=186.9
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KL 316 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~ 316 (570)
..+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.|.+|+..+...+...... ..
T Consensus 590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~g 669 (1238)
T KOG1127|consen 590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNG 669 (1238)
T ss_pred cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34557777788888888888888888888888888888887777777888888888888888777777543322 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH----------------HHHHH-----------------HHHH--
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE----------------IRTLI-----------------SEME-- 361 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~-----------------~~~~-- 361 (570)
.++++.+.+..+...|-...|..+++++++.....- ..... ++++
T Consensus 670 LaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~ 749 (1238)
T KOG1127|consen 670 LAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKT 749 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 355666666666666666666666666655321100 00000 0000
Q ss_pred ----------HHHHHHHHHhcCChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 362 ----------KKIKEEEKKAYIDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 362 ----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
-+.+.+-..+.. ...+..|+++|..|++ +.+...|+.++.+++++..++...|..||.+ .
T Consensus 750 ~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-s 827 (1238)
T KOG1127|consen 750 GALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-S 827 (1238)
T ss_pred ccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-h
Confidence 001111111100 1135678888888776 2344589999999999999999999999998 7
Q ss_pred HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 424 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
..|++.-|..+|-+.+...|.+...|.++|.++.+..+++.|...|.++..++|.|...|.+-+.+...+|+.
T Consensus 828 g~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~i 900 (1238)
T KOG1127|consen 828 GIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRI 900 (1238)
T ss_pred ccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999973
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-19 Score=164.74 Aligned_cols=259 Identities=13% Similarity=0.008 Sum_probs=157.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
.+..-...|..+.-..++++++...|.....|...+..+...|+...|..++.++++.+|++ .++|+....+.....
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns---eeiwlaavKle~en~ 632 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS---EEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc---HHHHHHHHHHhhccc
Confidence 33333344555555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred CHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPE-------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
+++.|...|.++....++.. +...+++.++|+..++.+++..|.....|..+|+++...++.+.|...|...+
T Consensus 633 e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 633 ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred cHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 55555555555555554422 33444555555555555555666667777777777777777777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc------
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN------ 479 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------ 479 (570)
+..|+.+..|..++.+-.+.|+...|...++++.-.+|.+...|.....+-.+.|+.++|...+.+||+-.|++
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 77777777777777777666777777777777766677776666666666666777777776666666665554
Q ss_pred ------------------------HHHHHHHHHHHHHhcCCH--HHH-HHHHcCCchHHHhh
Q psy3014 480 ------------------------AEAVEGYRQCSIAVSSNP--EEV-RKRAMGDPEVQQIL 514 (570)
Q Consensus 480 ------------------------~~~~~~l~~~~~~~~~~~--e~~-~~~~~~~p~~~~~~ 514 (570)
+.++...+.+.....+.. ... .+.+..+|++-..+
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 444556666665555422 222 34456688876655
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-20 Score=165.56 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+ ..++..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN---GDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++... ..+.....+..+|.++...|++++|...+.++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDP------------------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc------------------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999998731 23455677888999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+...|+++.++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 162 LQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999898999999999999999999999999888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=168.24 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHccCC---C-CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 24 ANNFIEAIEAYSEAIKLDG---T-NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 24 ~~~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455667777777775333 2 24557777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhccCCCcHHH
Q psy3014 100 STYEEGLKLDPNNEQM 115 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~ 115 (570)
..|+++++++|++..+
T Consensus 119 ~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 119 EAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHhCCCCHHH
Confidence 7777777777765443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=160.22 Aligned_cols=304 Identities=13% Similarity=0.084 Sum_probs=231.2
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
-+.-+..++-.-...-|+|...+..+|.|++..|++.+|+..|+++..++|.+..+.-..|.++...|++++-.......
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 34444445555556667777777777777777777777777777777777777777777777777777777766666666
Q ss_pred hccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCc
Q psy3014 106 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDP 185 (570)
Q Consensus 106 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (570)
+.++.....-|..-+.+... .+.+..++....
T Consensus 293 f~~~~~ta~~wfV~~~~l~~-----------------------------------~K~~~rAL~~~e------------- 324 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYD-----------------------------------EKKFERALNFVE------------- 324 (564)
T ss_pred Hhhhhcchhhhhhhhhhhhh-----------------------------------hhhHHHHHHHHH-------------
Confidence 66664444333332222221 011111111000
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH
Q psy3014 186 RMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE 265 (570)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 265 (570)
+.+..++....++...|..+...|+.++
T Consensus 325 ----------------------------------------------------K~I~~~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 325 ----------------------------------------------------KCIDSEPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred ----------------------------------------------------HHhccCcccchHHHhccHHHHhccchHH
Confidence 0111123455667778999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH-HH-HHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG-NC-YKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~A~~~~~~ 343 (570)
|+-.|+.|..+.|...+.|..+-.+|...|++.+|.-.-..+++..|.+ +.++..+| .+ ...-.--++|.+++++
T Consensus 353 A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s---A~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS---ARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc---hhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998 88888886 33 3344456788888888
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
++. ..|....+...++.++...|.+.+++..+++.+...|+ ...+..+|.++.
T Consensus 430 ~L~--------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 430 SLK--------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhc--------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 888 89999999999999999999999999999999998875 567899999999
Q ss_pred HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 424 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
..+.+.+|+++|..|+.++|++..+.-.+-.+-...
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 999999999999999999999988876665544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-19 Score=167.50 Aligned_cols=288 Identities=11% Similarity=0.030 Sum_probs=222.9
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH-HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK-GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
.+..|...+..|+|++|.+...++-...+. +..++.+ +.+....|+++.|...+.++.+.+|++.....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~--------- 156 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVE--------- 156 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHH---------
Confidence 345667777789999999888876665433 4444444 66669999999999999999998887643221
Q ss_pred hhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCC
Q psy3014 127 MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDG 206 (570)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (570)
T Consensus 157 -------------------------------------------------------------------------------- 156 (398)
T PRK10747 157 -------------------------------------------------------------------------------- 156 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN 286 (570)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (570)
...+.++...|++++|+..++++.+.+|+++.++..
T Consensus 157 --------------------------------------------l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~l 192 (398)
T PRK10747 157 --------------------------------------------ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRL 192 (398)
T ss_pred --------------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 123677778999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIAK-----ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
++.+|...|++++|+..+.+..+..+.++.... ++..+........+.+.....++....
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--------------- 257 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--------------- 257 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH---------------
Confidence 999999999999999999998876655421111 222221111222222222333333222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
..|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..+++.++.
T Consensus 258 -----------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 258 -----------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred -----------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999994 5566655555554 449999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.++|+..++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA 380 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999755 55899999999996654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-19 Score=144.58 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
..+...+|.-|+..|++..|...++++++.+|++ ..+|..++.+|...|+.+.|.+.|+++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls-------------- 97 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---YLAHLVRAHYYQKLGENDLADESYRKALS-------------- 97 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChhhHHHHHHHHHh--------------
Confidence 3577889999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
++|++.+++++.|..+..+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|.++|+++
T Consensus 98 ------------l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 98 ------------LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred ------------cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999974 4556789999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
++++|+.+.....++..++..|++..|..++++....-+-..+.+....++-..+|+.+.
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999999999999999999999888888888888888899998543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=160.81 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=185.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
...+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
++...|++++|+..|++++...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------------------------------- 132 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP------------------------------------------------------- 132 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc-------------------------------------------------------
Confidence 9999999999999999998642210
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
...
T Consensus 133 -----------------------------------------------------------------------------~~~ 135 (234)
T TIGR02521 133 -----------------------------------------------------------------------------QPA 135 (234)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 123
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|+..+++++...|.. ...+..++.+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~ 212 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT---AESLWLGIRI 212 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999988777 7778889999
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~ 346 (570)
+...|+.++|..+.+.+..
T Consensus 213 ~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHhhHHHHHHHHHHHHh
Confidence 9999999999998877655
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=157.95 Aligned_cols=223 Identities=10% Similarity=0.065 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-EYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
.++..+++-.+-.++...+++++|+..+.+++.++|++..+|..++.++..+| ++++++..+.++++.+|++ ..+|
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---yqaW 109 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---YQIW 109 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---hHHh
Confidence 45666777666677888999999999999999999999999999999999998 6899999999999999999 8999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 322 QRIGNCYKKMEDW--KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 322 ~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
...+.++...|.. ++++.++++++. .+|.+..+|..+|.++...|++++|++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~--------------------------~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILS--------------------------LDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999888874 677888888887 999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh---cCh----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKL---AAF----DLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDA 468 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~ 468 (570)
++.++++.+|.+..+|+.++.+.... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|.+.
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 99999999999999999999998876 333 578888999999999999999999999988 4567889999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.+++..+|+++.++..|+.++....
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999998643
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-17 Score=150.35 Aligned_cols=411 Identities=14% Similarity=0.088 Sum_probs=261.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+.+.|+..+.+-.+|..+...|+-++|..+...++..++.+...|.-+|.++...++|++|+++|+.|+.+.|+|...|.
T Consensus 34 L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred HHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
-++.+..++|+++.....-.+.++..|.....|..++..+...++...+...+.... .... .......
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~----------~t~~--~~~s~~~ 181 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFE----------KTQN--TSPSKED 181 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhhc--cCCCHHH
Confidence 999999999999999999999999999999999998888776443332221111110 0000 0000011
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
+......+..+.. ..........+..+.... ...
T Consensus 182 ~e~se~~Ly~n~i----~~E~g~~q~ale~L~~~e------------------------------------------~~i 215 (700)
T KOG1156|consen 182 YEHSELLLYQNQI----LIEAGSLQKALEHLLDNE------------------------------------------KQI 215 (700)
T ss_pred HHHHHHHHHHHHH----HHHcccHHHHHHHHHhhh------------------------------------------hHH
Confidence 1111100000000 000011111111111100 001
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHhhcccChhHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI-EQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~ 322 (570)
-+........|.++++.+++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|. ..+..
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r----~e~p~ 291 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR----HECPR 291 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc----cccch
Confidence 1233334445566666666666666666666666666666555555554222222333 333333333332 23333
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHhcccCC---HHHHHHH------HHHHHHHHHHHHHhcCC------------hh--hH
Q psy3014 323 RIGNCYKKMEDWKNAKV-YFEKSMSEHRT---PEIRTLI------SEMEKKIKEEEKKAYID------------PV--KA 378 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~-~~~~~~~~~~~---~~~~~~~------~~~~~a~~~~~~~~~~~------------~~--~~ 378 (570)
.++.....-.++..... ++...++..-. .++.... .-+++-+..+...+... |. -.
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 33333222222222222 22222222100 0000000 11122222222222211 22 24
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..++.++..+...|+++.|..+++.|+...|.-++.+...|.++...|++++|..+++.+-++|-.+...-...|....+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999988777666678999999
Q ss_pred CCCHHHHHHHHHHHHhhC
Q psy3014 459 MQQQSKAIDAYEKALELD 476 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~ 476 (570)
.++.++|.+...+.-.-.
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 999999998887765543
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=166.58 Aligned_cols=373 Identities=13% Similarity=0.061 Sum_probs=279.2
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--Chh
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPK 80 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 80 (570)
.++..+.-+.++-.+|..|...-+...|..+|++|.++||.+..+.-..+..|....+++.|...+-.+-+..|- ...
T Consensus 484 alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~ 563 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKE 563 (1238)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHh
Confidence 344555667788888888888888888888999999888888888888888888888888888887776666664 345
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
.|..+|..|...++...|+..|+.+++.+|.+...|.+++..|...+....+...+.++
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA--------------------- 622 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA--------------------- 622 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh---------------------
Confidence 67779999999999999999999999999999999999999998844443333322221
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
.
T Consensus 623 -------------------------------------------------------------------------------s 623 (1238)
T KOG1127|consen 623 -------------------------------------------------------------------------------S 623 (1238)
T ss_pred -------------------------------------------------------------------------------H
Confidence 1
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------HHHhcCHHHHHHHHHHHhhcccC
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAV-------YFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
..+|.+.-..+..+.+....|+|.+|+..+...+............+|.+ +...|=..+|...+++.++....
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 22346666777888999999999999999999998766555444455444 45567778888899888876543
Q ss_pred h---h--HHHHHHHHHHHHHH---HcC--------------------CH------HHHHHHHHHHhcccCCHH-------
Q psy3014 314 F---K--LIAKALQRIGNCYK---KME--------------------DW------KNAKVYFEKSMSEHRTPE------- 352 (570)
Q Consensus 314 ~---~--~~~~~~~~l~~~~~---~~~--------------------~~------~~A~~~~~~~~~~~~~~~------- 352 (570)
. . .....|..+|..+. ... .. --+.+++-..++....+.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 2 0 01112222222111 111 00 011122211111111100
Q ss_pred -HH-------HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 353 -IR-------TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 353 -~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+ ....+...|+..+.+++....++...|..+|.+ ...|++.-|.-+|-+.+...|.....|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 00 111234688999999999999999999999998 666999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
..+++-|...|.++..++|.+...|...+.+....|+.-++...|....++.
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~ 914 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC 914 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence 9999999999999999999999999999999999999999999998855544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=154.49 Aligned_cols=194 Identities=13% Similarity=0.071 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY--DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
++++++..++++++.+|++..+|..++.++...|+. ++++.++.++++.+|.+ ..+|..++.++...|++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHhhhHHHHHH
Confidence 456666666666666666666666666666666653 55666666666666666 6666666666666666666666
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHhcCCCCH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN---GK----YADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~A~~~~~~al~~~p~~~ 412 (570)
++.++++ .+|.+..+|..++.++... |. .++++.+..+++..+|++.
T Consensus 164 ~~~~~I~--------------------------~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 164 YCHQLLE--------------------------EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred HHHHHHH--------------------------HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCc
Confidence 6666666 6666666666666666554 22 2467778888888888888
Q ss_pred HHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC------------------CHHHHHHHHH
Q psy3014 413 KYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ------------------QQSKAIDAYE 470 (570)
Q Consensus 413 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~ 470 (570)
.+|..++.++.. +++..+|+..+.+++...|+++.++..++.+|.... ..++|...++
T Consensus 218 SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 297 (320)
T PLN02789 218 SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCS 297 (320)
T ss_pred CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 888888888877 455677888888888888888888888888887532 2355666666
Q ss_pred HHHhhCCCcHHHHH
Q psy3014 471 KALELDASNAEAVE 484 (570)
Q Consensus 471 ~al~~~p~~~~~~~ 484 (570)
..-+.||=-...|.
T Consensus 298 ~l~~~d~ir~~yw~ 311 (320)
T PLN02789 298 ELEVADPMRRNYWA 311 (320)
T ss_pred HHHhhCcHHHHHHH
Confidence 66566665544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-17 Score=139.32 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=237.5
Q ss_pred hchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q psy3014 49 SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128 (570)
Q Consensus 49 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 128 (570)
+..|.-++-.++.++|++.|-..++.+|...++++.+|.++...|..+.|+..-+..++ .|+-+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~------------- 104 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE------------- 104 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH-------------
Confidence 45677788889999999999999999999999999999999999999999997766554 4543322
Q ss_pred ccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCC
Q psy3014 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
T Consensus 105 -------------------------------------------------------------------------------- 104 (389)
T COG2956 105 -------------------------------------------------------------------------------- 104 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIA 288 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 288 (570)
....+...+|.-|+..|-++.|...|........--..+...+.
T Consensus 105 ------------------------------------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl 148 (389)
T COG2956 105 ------------------------------------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLL 148 (389)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 23455667999999999999999999999887666678999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIENRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
.+|....+|++|++.-++..+..+.. ..++..+..++..+....+.+.|...+.++++
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq-------------------- 208 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ-------------------- 208 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------------------
Confidence 99999999999999999998887654 45678888889888889999999999999998
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+|....+-..+|.+....|+|+.|++.++.+++.+|.. +.+...+..||.++|+.++.+..+.++.+..+..
T Consensus 209 ------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 209 ------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred ------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 899999999999999999999999999999999999985 6688889999999999999999999999988764
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+-..++..-....-.+.|..++.+-+...|+-...+
T Consensus 283 -~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 283 -DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred -cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 4555667777777778889999999999999744433
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-17 Score=153.03 Aligned_cols=408 Identities=16% Similarity=0.143 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKL-----DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.....++.-..+.++++-..-..+.. -.+++.+|-.+.......|+++.+.+.|++++...-...+.|+.++
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~a 364 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLA 364 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHH
Confidence 34444455555566666766654444332 2356778888999999999999999999999988888889999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLD--PNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.++...|.-..|+...+..+... |++.......+.++....+..
T Consensus 365 ls~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~---------------------------------- 410 (799)
T KOG4162|consen 365 LSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV---------------------------------- 410 (799)
T ss_pred HHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh----------------------------------
Confidence 99999999999999999999998 777776666665554411100
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
.+.+.-..+ .++ .. ......
T Consensus 411 eegldYA~k-------ai~---------~~--------------------------------------------~~~~~~ 430 (799)
T KOG4162|consen 411 EEGLDYAQK-------AIS---------LL--------------------------------------------GGQRSH 430 (799)
T ss_pred hhHHHHHHH-------HHH---------Hh--------------------------------------------hhhhhh
Confidence 000000000 000 00 000111
Q ss_pred HHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 245 RSAKKEKELGNEAYKK-----------KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
-.+..+..+|.+|..+ ....+++..++++++.+|+|+.+.+.++.-|...++.+.|.....++++.++.
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~ 510 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRG 510 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 3567778888887543 34678999999999999999999999999999999999999999999999554
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChh---------
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPV--------- 376 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~--------- 376 (570)
+. +.+|..++.++...+++.+|+...+.++...+.. .+...+++.++++..+...+..-..
T Consensus 511 ~~--~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 511 DS--AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred cc--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 32 8999999999999999999999999999977662 2334456666666665554432221
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------CCCC-----HHHHHHHHHHHHHhcChHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINR---------------------NPDD-----PKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------------------~p~~-----~~~~~~la~~~~~~~~~~~ 430 (570)
........+.+....++..+|++.+..+... .|.. ...|...|..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1112222333334445556666665555422 1121 2478899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH--HH---HHHHHc
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP--EE---VRKRAM 505 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--e~---~~~~~~ 505 (570)
|..++.++-.++|..+..|+..|.++...|++.+|.+.|..|+.++|+++.+...++.++.+.|+.. +. ....++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999832 22 346667
Q ss_pred CCchHHHhhc
Q psy3014 506 GDPEVQQILR 515 (570)
Q Consensus 506 ~~p~~~~~~~ 515 (570)
-||.+.+.|.
T Consensus 749 ~dp~n~eaW~ 758 (799)
T KOG4162|consen 749 LDPLNHEAWY 758 (799)
T ss_pred hCCCCHHHHH
Confidence 7999888886
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-17 Score=170.65 Aligned_cols=413 Identities=9% Similarity=-0.010 Sum_probs=292.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+...+..+...+...++++.|...+..+.+. .| +...+..+..+|.+.|++++|.+.|++..+ | +...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHH
Confidence 46677888888899999999999999988764 45 467888999999999999999999999864 3 567789999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNN-EQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
..|.+.|++++|+..|++..+..+.. ...+..+.......+....+........ .....+. ...+.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~-------~~g~~~d------~~~~n 263 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL-------KTGVVGD------TFVSC 263 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH-------HhCCCcc------ceeHH
Confidence 99999999999999999998754322 2222222222221111111000000000 0000000 00000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
..+..+ ............+.... +.
T Consensus 264 ~Li~~y----------~k~g~~~~A~~vf~~m~---------------------------------------------~~ 288 (697)
T PLN03081 264 ALIDMY----------SKCGDIEDARCVFDGMP---------------------------------------------EK 288 (697)
T ss_pred HHHHHH----------HHCCCHHHHHHHHHhCC---------------------------------------------CC
Confidence 011111 11111111111111100 02
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-cChhHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-ADFKLIAKALQR 323 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~ 323 (570)
+..+|..+...|.+.|++++|+..|++..... .-+...+..+...+.+.|++++|.+.+..+++.. +.+ ..++..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d---~~~~~~ 365 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD---IVANTA 365 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---eeehHH
Confidence 35578888999999999999999999987653 2245678888888999999999999999988764 333 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCC-----HHHHHHHHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRT-----PEIRTLISEMEKKIKEEEKKAY--IDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
+...|.+.|+.++|...|++....... ...+...|+.++|++.+++... ..|+ ..++..+...+.+.|..++
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHH
Confidence 999999999999999999987653221 1234455778899999988765 3343 5567778888999999999
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 397 AVKEYTEAINRNP--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 397 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999876432 24567888999999999999999998874 2344 456788899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 475 LDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+.|++...+..+..++.+.|+..++
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999999999999996653
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-16 Score=143.19 Aligned_cols=426 Identities=12% Similarity=0.066 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
...++.--+.+...|+|++|+....+++...|++..++...-.|+++.++|++|+...+.-....-.+ ...+..|.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 35677777788889999999999999999999988888888888888888888885554433222111 12267888888
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
+++..++|+..++ ..++.+.......+.+....+++.++.+.+..+...
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn---------------------------- 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN---------------------------- 139 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------------------
Confidence 8888888888887 445555555556666665544444443333332210
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh-HHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE-QRSAKK 249 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 249 (570)
+......... ..+......+... ..+..... .+..+.
T Consensus 140 ---~~dd~d~~~r-~nl~a~~a~l~~~--------------------------------------~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 140 ---NSDDQDEERR-ANLLAVAAALQVQ--------------------------------------LLQSVPEVPEDSYEL 177 (652)
T ss_pred ---CCchHHHHHH-HHHHHHHHhhhHH--------------------------------------HHHhccCCCcchHHH
Confidence 0000000000 0000000000000 00000000 146788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEF--------DPTD-------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
+++.+.++...|+|.+|++.+++++.+ +.+. ..+...++.++..+|+.++|..+|...++.+|.+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999543 1111 2456788999999999999999999999877755
Q ss_pred h-HHH---------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 315 K-LIA---------------------------------------------KALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 315 ~-~~~---------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
. ..+ .++.+.+.+.+..+..+.+.+...+.-...
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 1 111 122222222233333333333333333333
Q ss_pred CCHH--------HHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHH--------HHhcCCCC
Q psy3014 349 RTPE--------IRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFKNGKYADAVKEYTE--------AINRNPDD 411 (570)
Q Consensus 349 ~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~--------al~~~p~~ 411 (570)
|... .......+.++...+......+|.. ..+...++.+.+.+|+++.|+..+.. ..+.. ..
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~ 416 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HL 416 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cC
Confidence 3211 1122234666777777777778876 67888899999999999999999983 33222 34
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKL-------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
|.+-..+-..+++.++.+.|...+.+++.- .+.....+...+.+..+.|+-++|...+++.++.+|++.+++.
T Consensus 417 P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 417 PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 555555666677777766666666666542 3333344556777788889999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHcCCchHH
Q psy3014 485 GYRQCSIAVSSNP-EEVRKRAMGDPEVQ 511 (570)
Q Consensus 485 ~l~~~~~~~~~~~-e~~~~~~~~~p~~~ 511 (570)
.+..++..+.-.. +.....+...+.+.
T Consensus 497 ~lV~a~~~~d~eka~~l~k~L~p~~~l~ 524 (652)
T KOG2376|consen 497 QLVTAYARLDPEKAESLSKKLPPLKGLK 524 (652)
T ss_pred HHHHHHHhcCHHHHHHHhhcCCCcccch
Confidence 9999999887532 23333333344443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-17 Score=170.63 Aligned_cols=354 Identities=10% Similarity=0.027 Sum_probs=263.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccC--C----------
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--P---------- 76 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p---------- 76 (570)
.+...+..+...|.+.|++++|...|++... | +...|..+...|.+.|++++|+..|++..... |
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 4667788888999999999999999998754 4 56788889999999999999999999876532 1
Q ss_pred ------------------------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCC
Q psy3014 77 ------------------------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNR 132 (570)
Q Consensus 77 ------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 132 (570)
.+..++..+...|.+.|++++|...|+... +.+...|..+...+...+...++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHH
Confidence 134467888999999999999999998764 34667777777777663322222
Q ss_pred CccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccC
Q psy3014 133 GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMD 212 (570)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (570)
...+..+. ....
T Consensus 310 ~~lf~~M~-------------------------------------------------------~~g~------------- 321 (697)
T PLN03081 310 LCLYYEMR-------------------------------------------------------DSGV------------- 321 (697)
T ss_pred HHHHHHHH-------------------------------------------------------HcCC-------------
Confidence 21111110 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q psy3014 213 VDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVY 291 (570)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 291 (570)
..+..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|
T Consensus 322 -------------------------------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 322 -------------------------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred -------------------------------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 0123456667777777888888888888877765 45666777778888
Q ss_pred HHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH--H-------HHHHHHHHH
Q psy3014 292 FERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE--I-------RTLISEMEK 362 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~-------~~~~~~~~~ 362 (570)
.+.|++++|.+.|++..+ |+ ..+|..+...|.+.|+.++|+..|++.....-.++ . ....|..++
T Consensus 371 ~k~G~~~~A~~vf~~m~~--~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR--KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHCCCHHHHHHHHHhCCC--CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 888888888888877654 22 45677777888888888888888887766443322 1 223356777
Q ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 363 KIKEEEKKAYIDP--VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 363 a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+...++......+ .+...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 7777777654322 23457888999999999999999998764 2333 567899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.|++...|..++.+|.+.|++++|.+.++...+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-15 Score=160.04 Aligned_cols=197 Identities=9% Similarity=0.029 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIAKALQRIG 325 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~l~ 325 (570)
.+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|...|.+..+. .|+ ..++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----EVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Confidence 33444444445555555555555544443 223444444444555555555555555544432 232 23444444
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID-PVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
..|.+.|++++|...++.+.+ .. +.+..++..+...|.+.|++++|...|++.
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k--------------------------~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARK--------------------------QGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--------------------------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 445555555555555544443 32 345678888999999999999999999988
Q ss_pred HhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 405 INRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 405 l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.... ..+...|..+...|.+.|++++|++.|++.... .|+ ...|..+...+.+.|++++|...+.++.+..
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6542 235778999999999999999999999987654 454 5567777788999999999999999998753
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-17 Score=152.52 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----cC
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----AD 313 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~ 313 (570)
......+|.+|...+++.+|+..|++|+.+ +|.-..++.+||.+|...|++++|..++++++++. ..
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 334446899999999999999999999986 34446788999999999999999999999998653 34
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (570)
.+.+...+..++.++..++++++|..+++++++... .+.. .++..+..+.++|.+|..+|
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~-------------------~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL-------------------DAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-------------------hhccccchHHHHHHHHHHHHHHHhc
Confidence 556788999999999999999999999999887422 1111 44567889999999999999
Q ss_pred CHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRN--------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-------DPKFLKGWIRKGKILQ 457 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~ 457 (570)
+|++|.+.|++++.+. +.....+..+|..|.+.+++.+|...|.+++.+ .|+....+.+||.+|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9999999999999863 334568899999999999999999999998865 3555677889999999
Q ss_pred hCCCHHHHHHHHHHHHh
Q psy3014 458 GMQQQSKAIDAYEKALE 474 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~ 474 (570)
.+|+++.|+++.++++.
T Consensus 462 ~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HcccHHHHHHHHHHHHH
Confidence 99999999999999984
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-15 Score=156.75 Aligned_cols=380 Identities=10% Similarity=0.010 Sum_probs=292.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+...+...-..+.+.|++++|+..|+.....+.- +...+..+...+.+.|..++|...++.... | +...|..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 3455556666777899999999999998776532 233344455677888999999999987765 5 4677888888
Q ss_pred HHhhccCHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPN-NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.+...|++++|...|+.+.+.... +...+..+...+...+....+..
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~-------------------------------- 493 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE-------------------------------- 493 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH--------------------------------
Confidence 999999999999999999876532 44556666666555221111110
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
.+..+..... ..+
T Consensus 494 -----------------------vf~eM~~~Gv--------------------------------------------~Pd 506 (1060)
T PLN03218 494 -----------------------VFHEMVNAGV--------------------------------------------EAN 506 (1060)
T ss_pred -----------------------HHHHHHHcCC--------------------------------------------CCC
Confidence 0111110000 024
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh----cccChhHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIE----NRADFKLIAKAL 321 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~~~~~~~~ 321 (570)
..+|..+...|.+.|++++|+..|++..... .-+...|..+...+.+.|++++|.+.+.+... ..|+ ..++
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD----~vTy 582 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD----HITV 582 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc----HHHH
Confidence 6788899999999999999999999997653 23467889999999999999999999999975 3455 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCC--H-------HHHHHHHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRT--P-------EIRTLISEMEKKIKEEEKKAYI--DPVKAEEAKERGNELFK 390 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 390 (570)
..+...|.+.|++++|...|+.+.+..-. . ..+...|++++|...+...... .|+ ..++..+...+.+
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k 661 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Confidence 88889999999999999999999886532 2 2334567899999999988764 444 5678889999999
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
.|++++|...+.++.+.. +.+...|..+...|.+.|++++|...|++.... .| +...|..+...|.+.|++++|.+
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998764 346789999999999999999999999988654 45 46789999999999999999999
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 468 AYEKALEL--DASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 468 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++.... .|+ ...+..+..++.+.|+..+
T Consensus 741 lf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 741 VLSEMKRLGLCPN-TITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHH
Confidence 99988754 465 5566667788888888544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-15 Score=130.62 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=94.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-----hhHHh
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-----PKGYS 83 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 83 (570)
.....-+-.|..++-..+.++|++.|-.+++.+|...+++..+|..+.+.|..+.|+..-+..+. .|+. ..+..
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~ 111 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQ 111 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999998877655 4543 45788
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+|.=|+..|-++.|...|....+...--..+...|..+|..
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 999999999999999999998887544444555555544444
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=154.23 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=201.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc----
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN---- 310 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---- 310 (570)
.|....+...+|..|...|+|++|+..++.++.. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4567777888999999999999999999999998 5555556667999999999999999999999965
Q ss_pred -ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 311 -RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 311 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
.++++..+.++.+||.+|...|++++|..++++++.+... ......|.....+..++.++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------------------~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------------------LLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------------------hhccChHHHHHHHHHHHHHHH
Confidence 3567777999999999999999999999999999874321 111255667778889999999
Q ss_pred HCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--------CCCHHHHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINRN--------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--------PKFLKGWIRKG 453 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 453 (570)
..+++++|+.++++++++. |.-+..+.++|.+|..+|++++|.+++++|+.+. +.....+..+|
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 9999999999999998762 2346689999999999999999999999999863 33456788899
Q ss_pred HHHHhCCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhcCCH
Q psy3014 454 KILQGMQQQSKAIDAYEKALEL-------DASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..|.+++++.+|...|..+..+ .|+-...+.+|+.+|..+|+..
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 9999999999999999988875 3666788899999999999954
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-16 Score=135.34 Aligned_cols=364 Identities=15% Similarity=0.111 Sum_probs=245.9
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCc-chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHH
Q psy3014 20 AALQANNFIEAIEAYSEAIKLDGTNH-ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKES 98 (570)
Q Consensus 20 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 98 (570)
-++...+|..|+..++-.+..+.... ..-..+|.|++++|+|++|+..|+-+...+.-+.+.+..+|.|++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 35678899999999999887665432 55667999999999999999999999887766788999999999999999999
Q ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhH
Q psy3014 99 ISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM 178 (570)
Q Consensus 99 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
...-.++ |+++-....+-.+... .+.+. .+..
T Consensus 111 ~~~~~ka----~k~pL~~RLlfhlahk-lndEk-------------------------------~~~~------------ 142 (557)
T KOG3785|consen 111 KSIAEKA----PKTPLCIRLLFHLAHK-LNDEK-------------------------------RILT------------ 142 (557)
T ss_pred HHHHhhC----CCChHHHHHHHHHHHH-hCcHH-------------------------------HHHH------------
Confidence 8776654 5555444443333332 00000 0000
Q ss_pred HhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q psy3014 179 TTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAY 258 (570)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 258 (570)
+..-+ .+..+-...++.+++
T Consensus 143 ------------fh~~L------------------------------------------------qD~~EdqLSLAsvhY 162 (557)
T KOG3785|consen 143 ------------FHSSL------------------------------------------------QDTLEDQLSLASVHY 162 (557)
T ss_pred ------------HHHHH------------------------------------------------hhhHHHHHhHHHHHH
Confidence 00000 022234455788888
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..-.|.+|+..|.+++..+|+.......+|.||.++.-|+-+.+.+.-.+...|++ +.+....+...++.=+-..|.
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS---tiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS---TIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc---HHHHHHHHHHHhhhhccchhH
Confidence 88899999999999999999999999999999999999999999999999999998 666666555554432222222
Q ss_pred HHHHHHhc------------------ccCCHH----------------------HHHHHHHHHHHHHHHHHHhcCChhhH
Q psy3014 339 VYFEKSMS------------------EHRTPE----------------------IRTLISEMEKKIKEEEKKAYIDPVKA 378 (570)
Q Consensus 339 ~~~~~~~~------------------~~~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~~~~~ 378 (570)
.-.+.... ...+.+ .+...++.++|+...+. .+|..|
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCCh
Confidence 22222111 111110 11233556666665554 678888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAI---NRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
.-+...|.++...|+--...+.++.+- ++. -+.......+|.+++-..++++.+.+++..-...-++....
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 888888888877776554444443332 221 12233455666777777777777777777666666677777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcCCH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELD-ASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 497 (570)
+++++.+...|++.+|.+.|-++-..+ .+.......|++|+.+-++..
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 888888888888888888887776555 334445567888887777643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-16 Score=165.33 Aligned_cols=244 Identities=8% Similarity=-0.049 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+|..+...+...|++++|+..|++.+...+.+...+..+-..+...|..+.+.+.+..+++..-... ..+...+-..|
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~--~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD--GFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc--ceechHHHHHH
Confidence 4555666666777777777777777654333444444444455556666666666655554321110 33444556677
Q ss_pred HHcCCHHHHHHHHHHHhcccCCH-------HHHHHHHHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTP-------EIRTLISEMEKKIKEEEKKAY--IDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
.+.|+.++|...|+.. .++. ..+...|+.++|+..+++... ..|+ ..++..+-..+.+.|++++|..
T Consensus 535 ~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHH
Confidence 7777777777777765 2221 123344667777777776654 3444 3445556667889999999999
Q ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 400 EYTEAINRNP--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 400 ~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ +..|..+-..+...|+.+.|....+++++++|
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 9999874432 24578899999999999999999999885 35565 56677777778889999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 478 SNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++...+..++.+|...|+..+..
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999976533
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-14 Score=128.38 Aligned_cols=401 Identities=14% Similarity=0.117 Sum_probs=286.8
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
++..--+...|..-|.--..++++..|.+.|++||..+..+...|...+.+-++.++...|...+++|+.+-|.-...|+
T Consensus 66 irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 66 IRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 44455567888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.....-..+|+...|.+.|++-++..|+. .+|......-.....
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRyke----------------------------------- 189 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKE----------------------------------- 189 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhH-----------------------------------
Confidence 99999999999999999999999999964 344433332222000
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
..+....+..++-..
T Consensus 190 --------------------ieraR~IYerfV~~H--------------------------------------------- 204 (677)
T KOG1915|consen 190 --------------------IERARSIYERFVLVH--------------------------------------------- 204 (677)
T ss_pred --------------------HHHHHHHHHHHheec---------------------------------------------
Confidence 011111222222111
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.....|...+..-.+.|+..-|...|++|++...++. ......|..-..++.++.|.-+|+-++..-|.+.. ...
T Consensus 205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL 282 (677)
T KOG1915|consen 205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EEL 282 (677)
T ss_pred -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHH
Confidence 2355677778888888888888888888887655543 23344555556677788888888888877776621 222
Q ss_pred HHHHHHHHHHcCCH---HHHHH-----HHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHH-----
Q psy3014 321 LQRIGNCYKKMEDW---KNAKV-----YFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAE----- 379 (570)
Q Consensus 321 ~~~l~~~~~~~~~~---~~A~~-----~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 379 (570)
+......-.+-|+. ++++. .|++.+..+|.. .+....|..+.-.+.|++++...|...+
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 22222222333442 23322 244445444431 1233345667777888888876664322
Q ss_pred ----HHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 380 ----EAKERGN-ELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 380 ----~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
.|.+.+. .-+...+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+. .+-
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk 441 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHH
Confidence 2222221 1235678888888888888887753 56788888888888899999999999999988753 445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH--HHHHHHcCCc
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE--EVRKRAMGDP 508 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e--~~~~~~~~~p 508 (570)
....+-.++++++.....|++.++.+|.+..+|..++.+-..+|+++. +.+..+...|
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 566777889999999999999999999999999999999999999653 5566665555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=146.07 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=153.1
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCChh---
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK--- 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 80 (570)
.+..++.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 356789999999999999999999999999999999876 57899999999999999999999999999998876
Q ss_pred HHhHHHHHHhhc--------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhC
Q psy3014 81 GYSRKGSALSYL--------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 152 (570)
Q Consensus 81 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (570)
+++.+|.++... |++++|+..|++++..+|++...+..+..+....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-------------------------- 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-------------------------- 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--------------------------
Confidence 799999999876 8899999999999999999877665443332210
Q ss_pred CCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy3014 153 PRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKP 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
T Consensus 163 -------------------------------------------------------------------------------- 162 (235)
T TIGR03302 163 -------------------------------------------------------------------------------- 162 (235)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
.........+|..++..|++.+|+..|++++...|+. +.+++.+|.++...|++++|+.+++.+..
T Consensus 163 -----------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 163 -----------NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0111223457777888888888888888888876654 46778888888888888888887777665
Q ss_pred ccc
Q psy3014 310 NRA 312 (570)
Q Consensus 310 ~~~ 312 (570)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=141.04 Aligned_cols=121 Identities=39% Similarity=0.647 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.++.+..-|.-+++.++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|.+..+|.++|.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..+|++++|++.|+++|+++|+|...+.+|..+..+++...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998743
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-15 Score=141.45 Aligned_cols=317 Identities=18% Similarity=0.162 Sum_probs=215.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
..+.+.-+..++...|++++|++.+++....-++...++-.+|.+++++|++++|...|...|..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46778888999999999999999999988888888889999999999999999999999999999999999999988887
Q ss_pred hhcc-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 90 SYLG-----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 90 ~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.-.. +.+.-...|+......|........--. +.....|
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~------------------------------------~~~g~~F 126 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD------------------------------------FLEGDEF 126 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc------------------------------------cCCHHHH
Confidence 3332 4666777888887777765433221000 0001111
Q ss_pred HHHHHH-----H-hhCchhHH---hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 165 VQMIKE-----I-QKDPSLMT---TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 165 ~~~~~~-----~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
...+.. + ...|.... ....++.-...+..++............ ...
T Consensus 127 ~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~-------------------------~~~ 181 (517)
T PF12569_consen 127 KERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGS-------------------------FSN 181 (517)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCC-------------------------CCC
Confidence 111111 1 11122111 1112222122222222111100000000 000
Q ss_pred CCcccch-hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 236 EDKNLTD-EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
....... .....++++.++..|...|++++|+.+++++|+..|+.++.+...|.++...|++.+|...++.+..+++.+
T Consensus 182 ~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 182 GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 0000011 113468889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
-.+....+..+.+.|+.++|...+........++. ..+ .+-...+.....|.+|.+.|++
T Consensus 262 ---RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~--~~L---------------~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 262 ---RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL--SNL---------------NDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc--cCH---------------HHHHHHHHHHHHHHHHHHHhhH
Confidence 77788888999999999999999988776442110 000 0011233334567777777888
Q ss_pred HHHHHHHHHHHhc
Q psy3014 395 ADAVKEYTEAINR 407 (570)
Q Consensus 395 ~~A~~~~~~al~~ 407 (570)
..|++.|..+.+.
T Consensus 322 ~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 322 GLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=145.90 Aligned_cols=257 Identities=22% Similarity=0.333 Sum_probs=226.0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
......+.-....|..++...+|..|+..|..|++..|++...|...+.+++..+++++|.-..++.+++.|.. ...
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~---~k~ 119 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGF---SKG 119 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCc---ccc
Confidence 34446778888899999999999999999999999999999999999999999999999999999999999998 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh---------------cccC-----------CHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSM---------------SEHR-----------TPEIRTLISEMEKKIKEEEKKAYID 374 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~-----------~~~~~~~~~~~~~a~~~~~~~~~~~ 374 (570)
+...+.++...++..+|...++..- ..+. ....+..++.++.|+..--..+.++
T Consensus 120 ~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 120 QLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 8888888888888877776665221 1110 0235566788899999999999999
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK------------YYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
+.+.++++..|.+++..++.+.|+..|++++.++|+... .+-..|.-.++.|++..|.+.|..+|.++
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999998643 56677888999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH
Q psy3014 443 PKF----LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 443 p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
|++ ...|.++|.+..++|+..+|+...+.+++++|....++..-+.|+..+++..+++
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 5668899999999999999999999999999999999999999999999976644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-15 Score=143.47 Aligned_cols=208 Identities=11% Similarity=-0.055 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-HHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK-LIAKALQR 323 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~ 323 (570)
........+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|..+ .....+..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 44566677899999999999999999999999999999999999999999999999999999998876432 12346778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH---HHHHHHHHCCCHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKE 400 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~ 400 (570)
+|.++...|++++|+..|++++...+.. ....... .+...+...|....+..+
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSAES------------------------DPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccccCC------------------------ChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999999987632210 1111110 112223333432222222
Q ss_pred --H-HHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCCHHHHH
Q psy3014 401 --Y-TEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---------FLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 401 --~-~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
. .......|. ........+.++...|+.+.|...++........ ........+.++...|++++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 1 111111121 2233346888888999999999999887654322 2455667889999999999999
Q ss_pred HHHHHHHhhC
Q psy3014 467 DAYEKALELD 476 (570)
Q Consensus 467 ~~~~~al~~~ 476 (570)
..+..++.+.
T Consensus 328 ~~L~~al~~a 337 (355)
T cd05804 328 ELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHH
Confidence 9999999765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=130.37 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=116.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+++++..+|+. +..+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++
T Consensus 16 ~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 16 LKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44444488875 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+++++|.++..+|++++|+..|+++++++|+++..+..++.+...++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=161.68 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++.....+.+ ..++..+-
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd---~~t~~~lL 496 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAAL 496 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC---HhHHHHHH
Confidence 345677788999999999999999998643 456788999999999999999999999998543333 56777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCC---------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRT---------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
..+...|..+.+...+..+++..-. -+.+...|++++|...++.. +.+..+|..+...|...|+.++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHH
Confidence 7888999999999999988875433 24556678899999999875 5577889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 397 AVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL---DPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 397 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
|+..|++..+. .|+ ...+..+-..+.+.|+.++|..+|+...+. .| +...|..+..++.+.|++++|.+.+++
T Consensus 573 A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 573 AVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998874 454 445666667899999999999999998844 34 346788899999999999999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 472 ALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 472 al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
. ...|+ ..+|..|-.++...++.
T Consensus 651 m-~~~pd-~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 651 M-PITPD-PAVWGALLNACRIHRHV 673 (857)
T ss_pred C-CCCCC-HHHHHHHHHHHHHcCCh
Confidence 5 46675 67787777777666663
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-16 Score=137.84 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=149.7
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
+..+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34566778888999999999999999999999999888875 577888999999999999999999999888888655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+++.+|.++.... .......+.+++|+..+++++..+|.+...+..+..+....+ .
T Consensus 107 ~~a~~~~g~~~~~~~------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~ 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQI------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R 164 (235)
T ss_pred HHHHHHHHHHHHHhc------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H
Confidence 567888888876540 011223455666777777777777766544432222211000 0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++....
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01223578888999999999999999999987664 57899999999999999999998888776
Q ss_pred hCCC
Q psy3014 475 LDAS 478 (570)
Q Consensus 475 ~~p~ 478 (570)
..|+
T Consensus 232 ~~~~ 235 (235)
T TIGR03302 232 NYPD 235 (235)
T ss_pred hCCC
Confidence 6653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=127.75 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=138.9
Q ss_pred hhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhcc
Q psy3014 51 RSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130 (570)
Q Consensus 51 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 130 (570)
--..+...|+|++|+....+.+...|++..+....-.++.+.++|++|+...+.-....-.+... +.-+.+......
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk-- 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNK-- 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHccc--
Confidence 33456788999999999999999999999999999999999999999996555433222222221 222222222000
Q ss_pred CCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcc
Q psy3014 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEE 210 (570)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (570)
..+++..+. +.
T Consensus 95 ---------------------------------~Dealk~~~-----------------------~~------------- 105 (652)
T KOG2376|consen 95 ---------------------------------LDEALKTLK-----------------------GL------------- 105 (652)
T ss_pred ---------------------------------HHHHHHHHh-----------------------cc-------------
Confidence 011111110 00
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------------
Q psy3014 211 MDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP------------ 278 (570)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------------ 278 (570)
++.+.......|.++++.|+|++|+..|+..++.+.
T Consensus 106 --------------------------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 106 --------------------------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred --------------------------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 112344667789999999999999999998865422
Q ss_pred ------------------C-CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc--------cCh----hHHHHHHHHHHHH
Q psy3014 279 ------------------T-DITFQNNIAAVYFERKEYDQCIEQYIQKIENR--------ADF----KLIAKALQRIGNC 327 (570)
Q Consensus 279 ------------------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------~~~----~~~~~~~~~l~~~ 327 (570)
. +.+..++.|.++...|+|.+|++.+++++++. .+. ..+..+...++.+
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 2 34677899999999999999999999995321 110 2346678899999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCC
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
+..+|+..+|...|...+...+.
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC
Confidence 99999999999999999886654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-14 Score=136.90 Aligned_cols=303 Identities=11% Similarity=0.010 Sum_probs=218.1
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ .+..+..|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999988877754 456778899999999999999999999999998875543
Q ss_pred HHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcC
Q psy3014 118 AIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGV 197 (570)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
. +..+..
T Consensus 82 ~-~~~~~~------------------------------------------------------------------------ 88 (355)
T cd05804 82 L-HLGAFG------------------------------------------------------------------------ 88 (355)
T ss_pred H-hHHHHH------------------------------------------------------------------------
Confidence 2 111111
Q ss_pred cccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy3014 198 NMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD 277 (570)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 277 (570)
+| ...+....+...+......+
T Consensus 89 -------------------------------------------------------~~---~~~~~~~~~~~~l~~~~~~~ 110 (355)
T cd05804 89 -------------------------------------------------------LG---DFSGMRDHVARVLPLWAPEN 110 (355)
T ss_pred -------------------------------------------------------hc---ccccCchhHHHHHhccCcCC
Confidence 11 11344445555555555667
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|....++..+|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+.++.+++...+.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~------- 180 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC------- 180 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-------
Confidence 8888888999999999999999999999999999999 889999999999999999999999999983321
Q ss_pred HHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHH---HHHHHHHHhcChHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKYYS---NRAACYTKLAAFDLG 431 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~~~~~~A 431 (570)
.|. ....+..+|.++...|++++|+..|++++...|. ...... .+...+...|....+
T Consensus 181 ----------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 181 ----------------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred ----------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 111 1345678999999999999999999999876662 222111 222233334433333
Q ss_pred HHH--H-HHHHhcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHhcCCH
Q psy3014 432 LKD--C-ETCLKLDPK--FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS---------NAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 432 ~~~--~-~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~ 497 (570)
..+ . .......|. ........+.++...|+.++|...++......-. ...+....+.+....|+..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1 111111122 2233346888889999999999999887664322 3455566777777778755
Q ss_pred HHH
Q psy3014 498 EEV 500 (570)
Q Consensus 498 e~~ 500 (570)
++.
T Consensus 325 ~A~ 327 (355)
T cd05804 325 TAL 327 (355)
T ss_pred HHH
Confidence 543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-14 Score=116.35 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=184.9
Q ss_pred ccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 260 KKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
..+.++-+++....+.. .|+...++-....+....|+.+-|..++++.....|.+ ..+....|..+...|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S---~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS---KRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhc
Confidence 34556666666655543 34445566667777888999999999999998888998 7888888999999999
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
+++|+++|+..++ .+|.+..++...-.+...+|+..+|++.+...++..+.+++
T Consensus 102 ~~~A~e~y~~lL~--------------------------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E 155 (289)
T KOG3060|consen 102 YKEAIEYYESLLE--------------------------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE 155 (289)
T ss_pred hhhHHHHHHHHhc--------------------------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999 88888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ---QQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+|..++.+|...|+|++|.-++++.+-+.|-++..+..+|.+++-+| +++-|.++|.++++++|.+..++.++..|.
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877 688899999999999999999999999998
Q ss_pred HHhcCCHH
Q psy3014 491 IAVSSNPE 498 (570)
Q Consensus 491 ~~~~~~~e 498 (570)
..+-+.+.
T Consensus 236 ~~la~~sk 243 (289)
T KOG3060|consen 236 SALAQISK 243 (289)
T ss_pred HHHHHHhH
Confidence 88876443
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=134.59 Aligned_cols=119 Identities=39% Similarity=0.686 Sum_probs=113.8
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....++.+...|+.+++.++|.+|+..|.+||.++|+++..|.++|.+|.++|+++.|++.++.++.++|....+|.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+|..+|++.+|+..|+++++++|+|..++..|..+...
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887777655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-15 Score=124.38 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=101.5
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC--hHHHHHHHHHHHhcCCCCHHH
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY-TKLAA--FDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~ 448 (570)
..+|++++.|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+
T Consensus 67 ~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~a 146 (198)
T PRK10370 67 RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTA 146 (198)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhH
Confidence 389999999999999999999999999999999999999999999999975 67777 599999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++.+|.++...|++++|+.+|+++++++|.+..-.
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999988765444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=121.30 Aligned_cols=125 Identities=12% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 268 AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.+|+++++++|++ +..+|.++...|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~- 86 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALM- 86 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 4556666666553 3445666666666666666666666666665 55666666666666666666666666655
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 348 HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+|.++.+++.+|.++...|++++|+..|++++...|+++..+.++|.+...
T Consensus 87 -------------------------l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 -------------------------LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred -------------------------cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5555566666666666666666666666666666666666555555554433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=145.73 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=56.4
Q ss_pred cCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCc
Q psy3014 40 LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 40 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
.+|.+..++..+...+...|++++|+..++.+++.+|+....++.+|.++...+++.+|... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 46777888888888888888888888888888888888888888888888888887777665 555554443
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-13 Score=117.55 Aligned_cols=401 Identities=14% Similarity=0.078 Sum_probs=254.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhcc--------------C----
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--------------K---- 75 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~---- 75 (570)
-.-+|.++++.|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+. +
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 3446899999999999999999999887778899999999999999999999988776432 1
Q ss_pred --------CCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc----ccCCCc
Q psy3014 76 --------PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA----NLFSDP 143 (570)
Q Consensus 76 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 143 (570)
.+..+-...+|.+++..-.|.+|+..|.+++.-+|+.......++.++.. .+........- +.+.+.
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCc
Confidence 01223456678888888899999999999999999988888888888877 33222111110 001010
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
.+...+......+ .........-.+.+..+.+. .......+...+.-...+...
T Consensus 219 tiA~NLkacn~fR-l~ngr~ae~E~k~ladN~~~---------~~~f~~~l~rHNLVvFrngEg---------------- 272 (557)
T KOG3785|consen 219 TIAKNLKACNLFR-LINGRTAEDEKKELADNIDQ---------EYPFIEYLCRHNLVVFRNGEG---------------- 272 (557)
T ss_pred HHHHHHHHHHHhh-hhccchhHHHHHHHHhcccc---------cchhHHHHHHcCeEEEeCCcc----------------
Confidence 0100000000000 00001111111111111110 000111111111000000000
Q ss_pred CCCCCCCCCCCCCCcccch-hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKNLTD-EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 302 (570)
..+.++. -.--|++..++...|.++++..+|+...+. ++|..|.-+...|.++...|+-....+
T Consensus 273 ------------ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 273 ------------ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred ------------HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 0000000 113467888899999999999999888774 689999999999999998887554444
Q ss_pred HHHHH---hhcccChh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3014 303 QYIQK---IENRADFK---LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV 376 (570)
Q Consensus 303 ~~~~~---l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 376 (570)
.++-+ +.+-..+. ........++.+++-..++++.+.+++..-. ...+
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--------------------------YF~N 391 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--------------------------YFTN 391 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhcC
Confidence 44333 22221110 0123344566667777788888888776665 4556
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-HHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KGWIRKGK 454 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 454 (570)
+....+++++.....|+|.+|.+.|-+.-... .+.......+|.||.+.+.++.|...+-+. -.|... ..+-.++.
T Consensus 392 dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 66778899999999999999999998775544 234556678999999999999998877552 123332 33445788
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.+++.+++--|-+.|...-.+||+ ++-|.+
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP~-pEnWeG 499 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDPT-PENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCCC-ccccCC
Confidence 899999999999999998888986 555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-13 Score=130.95 Aligned_cols=308 Identities=16% Similarity=0.177 Sum_probs=205.0
Q ss_pred cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 45 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.++......++...|++++|++.+++....-++.....-.+|.++..+|++++|...|...++.+|+|...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677788899999999999999999988888999999999999999999999999999999999999999988888764
Q ss_pred HhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCC
Q psy3014 125 QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMG 204 (570)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
........ ...........+...- |+.
T Consensus 84 ~~~~~~~~---------------------------~~~~~~~~y~~l~~~y---------p~s----------------- 110 (517)
T PF12569_consen 84 LQLQLSDE---------------------------DVEKLLELYDELAEKY---------PRS----------------- 110 (517)
T ss_pred hhcccccc---------------------------cHHHHHHHHHHHHHhC---------ccc-----------------
Confidence 41100000 0000011111110000 000
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCCHHH
Q psy3014 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE-ALAHYNKAVEFDPTDITF 283 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~ 283 (570)
.+-..+...+..-..|.. +..++...+.. .-|..
T Consensus 111 -------------------------------------------~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPsl 145 (517)
T PF12569_consen 111 -------------------------------------------DAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSL 145 (517)
T ss_pred -------------------------------------------cchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchH
Confidence 000000000001111222 22333333322 23344
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh---hcc----------cCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKI---ENR----------ADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l---~~~----------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
...+-.+|....+..-...++.... +.. ... .....+++.++..|...|++++|+.+++++|.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--- 222 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--- 222 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---
Confidence 4444444443222222222222221 110 011 11245778889999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChH
Q psy3014 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429 (570)
Q Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 429 (570)
..|..++.+...|.++-+.|++.+|..+++.+-.+++.+.-+-...+..+.+.|+.+
T Consensus 223 -----------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 223 -----------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 888899999999999999999999999999999999988888888888899999999
Q ss_pred HHHHHHHHHHhcC--CC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 430 LGLKDCETCLKLD--PK-------FLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 430 ~A~~~~~~al~~~--p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
+|.+.+..-...+ |. ..+.....|.+|.+.|++..|+..|..+.+..
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999888776544 21 12333457889999999999999988887753
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-14 Score=119.60 Aligned_cols=360 Identities=12% Similarity=0.141 Sum_probs=242.3
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 21 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
+.+..+|..||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh
Q psy3014 101 TYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT 180 (570)
Q Consensus 101 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (570)
........ +..+.....+..... . +..++......++..|
T Consensus 100 V~~~~~D~----~~L~~~~lqLqaAIk-Y------------------------------se~Dl~g~rsLveQlp----- 139 (459)
T KOG4340|consen 100 VAFLLLDN----PALHSRVLQLQAAIK-Y------------------------------SEGDLPGSRSLVEQLP----- 139 (459)
T ss_pred HHHHhcCC----HHHHHHHHHHHHHHh-c------------------------------ccccCcchHHHHHhcc-----
Confidence 88766543 222221111111100 0 0000000000000000
Q ss_pred hccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHc
Q psy3014 181 KLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKK 260 (570)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 260 (570)
....+....+.|.+.++.
T Consensus 140 --------------------------------------------------------------~en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 140 --------------------------------------------------------------SENEADGQINLGCLLYKE 157 (459)
T ss_pred --------------------------------------------------------------CCCccchhccchheeecc
Confidence 003455667789999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh----cccCh----------------------
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE----NRADF---------------------- 314 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~~~~---------------------- 314 (570)
|+++.|++-|+.+++...-++..-++++.++++.|+++.|+++...+++ ..|..
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 9999999999999999999999999999999999999999998877764 34432
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC---HHHHH------HHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---PEIRT------LISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
....+++...+-++++.++++.|.+.+...-..... +-.+. .-++.-.....+.-.+..+|-..++.-++-
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 234677788888999999999998877544332221 11111 112233444555556668888888888888
Q ss_pred HHHHHCCCHHHHHHHHHH------------------HHhcCCCCHHH-HHHHHHH---------------HHHh-c----
Q psy3014 386 NELFKNGKYADAVKEYTE------------------AINRNPDDPKY-YSNRAAC---------------YTKL-A---- 426 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~------------------al~~~p~~~~~-~~~la~~---------------~~~~-~---- 426 (570)
.+|.+..-|+-|...+.+ ++-..|.+++. .-.++.+ .... .
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~ 397 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDE 397 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 888888888877665432 11123333321 1111110 0000 0
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
....|++.|+.++++ ...+.+..++++....+|..+.+.|.+..+...++.....+
T Consensus 398 a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLN 453 (459)
T KOG4340|consen 398 AIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWKLN 453 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceeeec
Confidence 122344455555543 23456677888888888888888888888777665444333
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=115.11 Aligned_cols=185 Identities=17% Similarity=0.081 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+....+-....+....|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+ ..++...
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~---~v~~KRK 126 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD---TVIRKRK 126 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch---hHHHHHH
Confidence 5566667778888899999999999999999999999999999999999999999999999999999999 7777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
--+...+|+.-+|++.+...++ ..+.+.++|..++.+|+..|+|.+|.-|+++.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~--------------------------~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLD--------------------------KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHH--------------------------HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7788889999999999999998 88999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 405 INRNPDDPKYYSNRAACYTKLA---AFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
+-+.|.++..+..+|.+++-.| ++.-|.++|.++++++|.+..+++.+-.+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999999998877 57789999999999999888888876655543
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=128.44 Aligned_cols=319 Identities=16% Similarity=0.197 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhcc------CCCChh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISL------KPDWPK 80 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 80 (570)
--.+-..|.-+++.|++...+.+|+.|++....+ ..+|..+|.+|+.+++|++|+++-..-+.+ .-..+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4456778999999999999999999999998776 456889999999999999999876544432 223456
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPN------NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR 154 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (570)
+--++|..+.-.|.|++|+.+..+-+.+... ...+++.++.+|...+.....
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------------------- 154 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------------------- 154 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC----------------------
Confidence 6778999999999999999999887765321 122344444444331110000
Q ss_pred CCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 155 TKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAE 234 (570)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (570)
.- |.+
T Consensus 155 -------------------------------------------~~--------------------------------pee 159 (639)
T KOG1130|consen 155 -------------------------------------------EA--------------------------------PEE 159 (639)
T ss_pred -------------------------------------------CC--------------------------------hhh
Confidence 00 000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 235 PEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l 308 (570)
. -..+.. -...++.|.++|..-+++... ...++-++|..|+.+|+|+.|+..-+.-+
T Consensus 160 ~-----g~f~~e------------v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL 222 (639)
T KOG1130|consen 160 K-----GAFNAE------------VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRL 222 (639)
T ss_pred c-----ccccHH------------HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHH
Confidence 0 000000 012245566666665555322 23567788888999999999998888777
Q ss_pred hcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 309 ENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 309 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
.+...+ .....++.++|.++.-.|+++.|+++|++.+.+. ++.- .....+...+.+|
T Consensus 223 ~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA---------------ielg-----~r~vEAQscYSLg 282 (639)
T KOG1130|consen 223 EIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA---------------IELG-----NRTVEAQSCYSLG 282 (639)
T ss_pred HHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH---------------HHhc-----chhHHHHHHHHhh
Confidence 554332 2335688889999999999999999998877521 1110 1122345567788
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCC-CHHHHHHHH
Q psy3014 386 NELFKNGKYADAVKEYTEAINRNP------DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPK-FLKGWIRKG 453 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~l~ 453 (570)
..|.-..++++|+.++.+-+.+.. ....+++.+|..+...|..++|+.+.++.++. +|. ...+..++.
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nls 362 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLS 362 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhH
Confidence 888888888888888887766532 24567888888888888888888888777654 222 234455555
Q ss_pred HHHHhCCCHH
Q psy3014 454 KILQGMQQQS 463 (570)
Q Consensus 454 ~~~~~~g~~~ 463 (570)
..-...|..+
T Consensus 363 dl~~~lG~~d 372 (639)
T KOG1130|consen 363 DLILELGQED 372 (639)
T ss_pred HHHHHhCCCc
Confidence 5555555433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-12 Score=111.29 Aligned_cols=299 Identities=13% Similarity=0.115 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-ChhHHhHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-WPKGYSRKGSA 88 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 88 (570)
.+......|..-+..|+|.+|.+...+.-+..+....++..-+.+--++|+++.|-.++.++-+..++ .......++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45666678888899999999999999988887777777777788889999999999999999998554 45678889999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
....|++..|.....++++..|.++.+.....
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~------------------------------------------------ 194 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLAL------------------------------------------------ 194 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHH------------------------------------------------
Confidence 99999999999999999999999988766443
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
T Consensus 195 -------------------------------------------------------------------------------- 194 (400)
T COG3071 195 -------------------------------------------------------------------------------- 194 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-H--HHHHHHHH--HHHhcCHHHHHH---HHHHHhhcccChhHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-T--FQNNIAAV--YFERKEYDQCIE---QYIQKIENRADFKLIAKA 320 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~--~~~~la~~--~~~~~~~~~A~~---~~~~~l~~~~~~~~~~~~ 320 (570)
.+|...|++.....++.+.-+..--+. + -+-..+.. +...++-..+.. .++..-..-..+ +..
T Consensus 195 ------r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~---p~l 265 (400)
T COG3071 195 ------RAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRND---PEL 265 (400)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcC---hhH
Confidence 445556777777776666655432221 1 11111111 111122111111 222211112222 556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
...++.-+...|+.++|.+..+.+++...++.. ... .-...-++...=++.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---------------------------~~~--~~~l~~~d~~~l~k~ 316 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---------------------------CRL--IPRLRPGDPEPLIKA 316 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---------------------------HHH--HhhcCCCCchHHHHH
Confidence 667777888889999999988888874432221 111 112455777777888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
.++.++.+|++|..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999988888775 456777899999999999999998888744
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=115.62 Aligned_cols=125 Identities=19% Similarity=0.324 Sum_probs=115.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+++++..+|.+......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+..++.+|.++...|++++|+..|+++++++|++.........+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 999999999999999999999999999999999988765555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-14 Score=141.01 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=180.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh-------
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK------- 315 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------- 315 (570)
.|.+..++..+...+...+++++|+..++.+++.+|+.+.+++.+|.++...+++.++... .++...+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4578999999999999999999999999999999999999999999999999998887766 5555544431
Q ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 316 ---------LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 316 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
....+++.+|.||.++|++++|...|+++++ .+|.++.++.++|.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--------------------------~D~~n~~aLNn~AY 158 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--------------------------ADRDNPEIVKKLAT 158 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------------cCcccHHHHHHHHH
Confidence 0136888899999999999999999999998 88999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH--------HH-----
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR--------KG----- 453 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------l~----- 453 (570)
.+... +.++|+.++.+|+.. +...++|..+.+.+.+.+..+|.+.+.+.. +|
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH
Confidence 99988 999999999999876 666778889999999999988887554321 23
Q ss_pred -------HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 454 -------KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 454 -------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+|...++|++++..++.+++++|+|..++..++.|+...-.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~ 272 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYK 272 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHcc
Confidence 678888999999999999999999999999999999996655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=115.40 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+ ...+..+|......|++..|+..+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d---~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD---RELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc---HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334666666666677777777 777777777777777777777776666666 5556557777777777777777777
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 422 (570)
++.. ..|.+.++|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+
T Consensus 125 kA~~--------------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 125 KAAR--------------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred HHhc--------------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence 7776 66777777777777777777777777777777777777777777777777
Q ss_pred HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
.-.|+++.|..++..+....+.+..+..+++.+...+|++.+|...-.+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777777777766666677777777777777777777655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=114.92 Aligned_cols=172 Identities=15% Similarity=0.095 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy3014 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377 (570)
Q Consensus 298 ~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 377 (570)
..+...+-+....+|++ ..+ ..++..+...|+-+.+.....++.. .+|.+
T Consensus 50 ~~a~~al~~~~~~~p~d---~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--------------------------~~~~d 99 (257)
T COG5010 50 QGAAAALGAAVLRNPED---LSI-AKLATALYLRGDADSSLAVLQKSAI--------------------------AYPKD 99 (257)
T ss_pred hHHHHHHHHHHhcCcch---HHH-HHHHHHHHhcccccchHHHHhhhhc--------------------------cCccc
Confidence 33666666777888888 677 8899999999999999999988777 78888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
...+..+|...+..|+|..|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
-.|+++.|..++..+...-+.+..+..+|+.+...+|+..++
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999999999999999999999999999996654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-14 Score=109.44 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=108.3
Q ss_pred CC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 ID-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
+. ++.-+..+.+|..++..|++++|...|+-+...+|.++..|++||.++..+|++++|+..|.+++.++|+++.++++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 67 88889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELD---ASNAEAVEGYRQCSI 491 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~ 491 (570)
.|.|++..|+.+.|.+.|+.++... |.+..+...-...+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999999999999987 455444444333333
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-11 Score=108.17 Aligned_cols=402 Identities=13% Similarity=0.053 Sum_probs=252.1
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
..+...|..-+..-++..+..-|...+++|+.+-|.--..|+.....-..+|+...|.+.|++.++..|+ ..+|.....
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~ 182 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIK 182 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHH
Confidence 4456678888999999999999999999999999998889999888888999999999999999999996 577888888
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
.-...+..+.|...|++.+-..|+ ...|...+..-...++...+. ..+..+
T Consensus 183 fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR----------------------------~VyerA 233 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALAR----------------------------SVYERA 233 (677)
T ss_pred HHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHH----------------------------HHHHHH
Confidence 888888999999999999988875 344444444433311111000 111111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
+..+..+..... +...+..+-.. ...-..+
T Consensus 234 ie~~~~d~~~e~-------lfvaFA~fEe~-------------------------------------------qkE~ERa 263 (677)
T KOG1915|consen 234 IEFLGDDEEAEI-------LFVAFAEFEER-------------------------------------------QKEYERA 263 (677)
T ss_pred HHHhhhHHHHHH-------HHHHHHHHHHH-------------------------------------------HHHHHHH
Confidence 111111100000 00000000000 0000111
Q ss_pred HHHHHHHHHHH-----------------HccC---HHHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Q psy3014 248 KKEKELGNEAY-----------------KKKN---FEEAL-----AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 248 ~~~~~la~~~~-----------------~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 302 (570)
...+..|.-.. +-|+ .++++ -.|++.+..+|.|.++|+..-.+-...|+.+.-.+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 11122221111 1222 12222 23455566677777788777777777788888888
Q ss_pred HHHHHhhcccChhH----HHHHHHHHHHHH---HHcCCHHHHHHHHHHHhcccCCH------------HHHHHHHHHHHH
Q psy3014 303 QYIQKIENRADFKL----IAKALQRIGNCY---KKMEDWKNAKVYFEKSMSEHRTP------------EIRTLISEMEKK 363 (570)
Q Consensus 303 ~~~~~l~~~~~~~~----~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~~~a 363 (570)
.|++++...|.... .-.+|.-+-.++ ....+.+.+...|+.++++-|.. .......++..|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 88888766654311 111222222211 24567777777888877776652 122334566777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
...+-.++...|.+- .......+-.+.++++.+...|++-++..|.+..+|...|.+-..+|+.+.|...|+-|+....
T Consensus 424 RkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 777777777777643 3334445556777888888888888888888888888888888888888888888888877543
Q ss_pred CCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 444 KFLK--GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 444 ~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
-+.. .|-.....-...|.++.|...|++.|+..+... +|...+....
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 3322 233344445667888888888888888776554 7766666555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-13 Score=115.02 Aligned_cols=155 Identities=13% Similarity=0.188 Sum_probs=132.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
-+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++ ...|..+|.+|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCC
Confidence 4456888999888655543221 2221 1113677899999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHhcCC
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL-FKNGK--YADAVKEYTEAINRNP 409 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~~~p 409 (570)
++++|+..|++++. ..|+++.++..+|.++ ...|+ +++|...++++++.+|
T Consensus 88 ~~~~A~~a~~~Al~--------------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP 141 (198)
T PRK10370 88 DYDNALLAYRQALQ--------------------------LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA 141 (198)
T ss_pred CHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 99999999999999 8999999999999975 67777 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
+++.+++.+|.++...|++++|+..|+++++..|.+..
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999887543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=108.00 Aligned_cols=285 Identities=14% Similarity=0.076 Sum_probs=214.1
Q ss_pred chhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 50 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
.-|..-+..|+|.+|.+...++-+..+.-.-++..-+.+-..+|+++.|-.++.++-+..+++.-
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l--------------- 153 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL--------------- 153 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH---------------
Confidence 34555667799999999999988888777778888888889999999999999999888554322
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
T Consensus 154 -------------------------------------------------------------------------------- 153 (400)
T COG3071 154 -------------------------------------------------------------------------------- 153 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
......+.+....|+++.|..-..++++..|.++.+......
T Consensus 154 --------------------------------------~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 154 --------------------------------------AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred --------------------------------------HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHH
Confidence 122346777778999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH--HHHcCCHHHHHH---HHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC--YKKMEDWKNAKV---YFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
+|...|+|.....++.+.-+..--+.....-+-+.+.. +....+-..+.. +.+..-.
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr------------------ 257 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR------------------ 257 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH------------------
Confidence 99999999999998888775533221112222222211 111111111111 2211111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.-..++.....++.-+...|+.++|.+...++++..-+. .....++ ...-+++..=++..++.++..|+
T Consensus 258 --------~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 258 --------KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred --------HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHHHHhCCC
Confidence 223456777788889999999999999999999876433 3222222 34568899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..++.++.++|+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999986 677889999999999854
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=122.19 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ-SKAIDAYEK 471 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 471 (570)
++.+|...|++..+..+.++..++.+|.++..+|+|++|...+++++..+|+++.++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3555555555555554555555555555555555555555555555555555555555555555555555 344445555
Q ss_pred HHhhCCCcHHH
Q psy3014 472 ALELDASNAEA 482 (570)
Q Consensus 472 al~~~p~~~~~ 482 (570)
....+|+++.+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 55555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-13 Score=133.96 Aligned_cols=135 Identities=9% Similarity=0.013 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+.++..||.+....|.+++|...++.+++ ..|++..++..++.++.+.+++++|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--------------------------~~Pd~~~a~~~~a~~L~~~~~~eeA 139 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--------------------------RFPDSSEAFILMLRGVKRQQGIEAG 139 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHhccHHHH
Confidence 55666666666666666666666666665 5566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+..+++++..+|+++..++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...
T Consensus 140 ~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 140 RAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666665666666666666666666666666666666665544
Q ss_pred C
Q psy3014 478 S 478 (570)
Q Consensus 478 ~ 478 (570)
+
T Consensus 220 ~ 220 (694)
T PRK15179 220 D 220 (694)
T ss_pred c
Confidence 3
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=122.01 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
......|.++...|++++|++.+.+. .+.++......++..+++++.|.+.++.+.+.+.+. .-+....+++
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv 174 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHH
Confidence 34455678888899999999998864 678888889999999999999999999998888776 5555555566
Q ss_pred HHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 328 YKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 328 ~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
....| ++.+|...|+.... ..+..+..+..++.+++.+|+|++|...+.+++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~--------------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSD--------------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHC--------------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHhCchhHHHHHHHHHHHHh--------------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 65555 58999999999877 566778889999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCh-HHHHHHHHHHHhcCCCCHHH
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAF-DLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~ 448 (570)
..+|+++.++.+++.+...+|+. +.+.+++.+....+|+++..
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999998 66777888888889998754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=108.14 Aligned_cols=106 Identities=8% Similarity=0.043 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
++..+.++..|..++..|++++|...|+-+...+|.++..|++||.|+..+|+|++|+..|.+++.++|+++.+++..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (570)
|++..|+.+.|.+.|+.++.....++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999874443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=131.27 Aligned_cols=173 Identities=13% Similarity=0.024 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKA---VEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+.+..+-.+....+....+...+-++ ....|.++.++..+|.+....|.+++|...++.+++..|++ ..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~ 126 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---SEAFILM 126 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHH
Confidence 34444455555555555544444444 45589999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
+.++.+.+++++|+..+++++. .+|+++..++.+|.++...|++++|+.+|+++
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~--------------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFS--------------------------GGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhh--------------------------cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999 89999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+..+|+++.++..+|.++...|+.++|...|+++++....-...+
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999999999999999876655543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=133.47 Aligned_cols=357 Identities=12% Similarity=0.014 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-ccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC---------Chh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAI-KLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD---------WPK 80 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~ 80 (570)
+..+...|......|++..+..++..+- .....++......+.++...|++++|...+..+....+. ...
T Consensus 374 ~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~ 453 (903)
T PRK04841 374 RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE 453 (903)
T ss_pred HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH
Confidence 3555566777777777777666665431 112234555566777777778888887777776543221 123
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-----HHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-----MKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
....+|.++...|++++|...+++++...+.... +...++.++...++
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------------------- 506 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------------------- 506 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---------------------------
Confidence 4455677777888888888888887775444322 11222222222111
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
+..+...+.........
T Consensus 507 --------~~~A~~~~~~al~~~~~------------------------------------------------------- 523 (903)
T PRK04841 507 --------LARALAMMQQTEQMARQ------------------------------------------------------- 523 (903)
T ss_pred --------HHHHHHHHHHHHHHHhh-------------------------------------------------------
Confidence 11111100000000000
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP--------TDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
..........+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+.++
T Consensus 524 ----~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 524 ----HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred ----hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 000012344667789999999999999999999988621 12334567889999999999999999999
Q ss_pred hhcccC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHH
Q psy3014 308 IENRAD--FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKER 384 (570)
Q Consensus 308 l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 384 (570)
+..... ......++..+|.++...|+++.|...+.++........ .... ........
T Consensus 600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--------------------~~~~~~~~~~~~~ 659 (903)
T PRK04841 600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--------------------YHSDWIANADKVR 659 (903)
T ss_pred HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--------------------ccHhHhhHHHHHH
Confidence 865321 112356777789999999999999999999876321100 0000 00111112
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGWIRKGK 454 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~ 454 (570)
...+...|+.+.|..++.......+.... .+..+|.++...|++++|...+++++.... ....++..+|.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445578888888887776543322221 256788899999999999999999887521 23456778899
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++...|+.++|...+.+++++......
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999999999999999988755433
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=118.95 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=170.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDP------TDITFQNNIAAVYFERKE--------------------YDQCIEQY 304 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~ 304 (570)
-++|..+.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 3588899999999999999888776532 236789999999988765 34555666
Q ss_pred HHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 305 IQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 305 ~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
..-+++.... .....++-++|..|+.+|+|+.|+..-+.-+.+... .- .....-.++
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e---------------fG-----DrAaeRRA~ 238 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE---------------FG-----DRAAERRAH 238 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH---------------hh-----hHHHHHHhh
Confidence 5555443222 123567888999999999999999888766652211 00 111234577
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRN----P--DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGW 449 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~ 449 (570)
.++|.++.-.|+++.|+++|+..+.+. . -.+...+.+|..|.-..++++|+.++.+-+.+.. ....++
T Consensus 239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 889999999999999999999887542 2 2356788999999999999999999998776632 346788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-----CC-cHHHHHHHHHHHHHhcCC
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELD-----AS-NAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~ 496 (570)
+.+|..+..+|..++|+.+.++.+++. |. ...+..+|......+|..
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 899999999999999999988887653 32 556788899999888873
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=127.93 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
........++..+...|-...|+..|++ +..|-....||...|+..+|..+..+-++.+|+ +..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d----~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD----PRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc----chhHHHh
Confidence 3455667789999999999999999998 477888899999999999999999999884444 7888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRT--PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
|.+.....-|++|.++.+........ +......++++++...++..+.++|-....|+.+|.+..+.++++.|..+|.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 98888877778887777665443111 1112234678888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++..+|++..+|++++.+|...|+-.+|...++++++.+-+++..|-+.-.+....|.+++|++.|.+.+.+.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887654
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-12 Score=124.28 Aligned_cols=210 Identities=14% Similarity=0.213 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|........++.++...|-...|+.++++ ...|-....||...|+..+|.....+-++..+++..+-.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHh
Confidence 33445667899999999999999999988 5677788899999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
|++-.-...++++.+... .+..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++|.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 988877788888777543 3566777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.++.++|++..+|.+++..|.+.|+..+|...++.|++-+-++..+|.++..+....|..++
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999665
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-09 Score=103.01 Aligned_cols=409 Identities=12% Similarity=0.106 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--ChhHHhHHHHHHhhccCHHHHHHHHHH
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPKGYSRKGSALSYLGRYKESISTYEE 104 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 104 (570)
|+.--.+|++++-.-.+-+..|.......+.+|+...-...|.+++..-|- +...|-..-......|-++-++..|++
T Consensus 84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 334445566666555556778888888888889988888899888887764 344555555666677778889999999
Q ss_pred hhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccC
Q psy3014 105 GLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD 184 (570)
Q Consensus 105 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (570)
.++.+|...+-+.. .+.......++...+...+.++.+...- .-....-+......+.++|......-
T Consensus 164 YLk~~P~~~eeyie---~L~~~d~~~eaa~~la~vln~d~f~sk~-------gkSn~qlw~elcdlis~~p~~~~sln-- 231 (835)
T KOG2047|consen 164 YLKVAPEAREEYIE---YLAKSDRLDEAAQRLATVLNQDEFVSKK-------GKSNHQLWLELCDLISQNPDKVQSLN-- 231 (835)
T ss_pred HHhcCHHHHHHHHH---HHHhccchHHHHHHHHHhcCchhhhhhc-------ccchhhHHHHHHHHHHhCcchhcccC--
Confidence 99998876432221 1111122222333333333222221110 00011122233333333333222111
Q ss_pred ccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHH
Q psy3014 185 PRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFE 264 (570)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 264 (570)
+-..+....+.. ...-...|..+|..|.+.|.++
T Consensus 232 --vdaiiR~gi~rf--------------------------------------------tDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 232 --VDAIIRGGIRRF--------------------------------------------TDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred --HHHHHHhhcccC--------------------------------------------cHHHHHHHHHHHHHHHHhhhhH
Confidence 111111101100 1145678889999999999999
Q ss_pred HHHHHHHHHHhc-------------------------------------------------------------------C
Q psy3014 265 EALAHYNKAVEF-------------------------------------------------------------------D 277 (570)
Q Consensus 265 ~A~~~~~~al~~-------------------------------------------------------------------~ 277 (570)
+|...|++++.. +
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 999999998754 2
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-cccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC----
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIE-NRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT---- 350 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---- 350 (570)
|++..-|.... -+..|+..+-+..|..+++ .+|.- ......|..+|..|...|+.+.|...|+++....-.
T Consensus 346 ~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 346 PHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred CccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 22223232222 2234667777888888773 34432 123678899999999999999999999999875432
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhcCChh------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 351 --------PEIRTLISEMEKKIKEEEKKAYIDPV------------------KAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 351 --------~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
++......+++.|+...+.+...... +..+|..++......|-++.....|++.
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12334445678888887776653211 3557778888888899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIRK---GKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+.+.--.|....+.|..+....-+++|.+.|++.+.+. |.-.+.|... ..--+.-...+.|...|++|++..|..
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence 99988889999999999999999999999999999886 4444555442 222333457899999999999998832
Q ss_pred --HHHHHHHHHHHHHhcC
Q psy3014 480 --AEAVEGYRQCSIAVSS 495 (570)
Q Consensus 480 --~~~~~~l~~~~~~~~~ 495 (570)
..++..++......|-
T Consensus 584 ~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 2344455555555554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-10 Score=125.08 Aligned_cols=371 Identities=11% Similarity=-0.027 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhc-cCCCChhHHhHHHHHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS-LKPDWPKGYSRKGSAL 89 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~ 89 (570)
...+...|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++.....++.++
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 455566677788899999999877665221 11234455567778888999887777765411 1123455667788899
Q ss_pred hhccCHHHHHHHHHHhhccCCC-----cHHH----HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 90 SYLGRYKESISTYEEGLKLDPN-----NEQM----KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~-----~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
...|++++|...+..+....+. .... ...++.++...+
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--------------------------------- 466 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDG--------------------------------- 466 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCC---------------------------------
Confidence 9999999999999988764332 1111 111111111100
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
++..+...... .+... + .
T Consensus 467 --~~~~A~~~~~~--------------------al~~~---------------------------------~-------~ 484 (903)
T PRK04841 467 --DPEEAERLAEL--------------------ALAEL---------------------------------P-------L 484 (903)
T ss_pred --CHHHHHHHHHH--------------------HHhcC---------------------------------C-------C
Confidence 01111100000 00000 0 0
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 314 (570)
........+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++......
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 0001233456678889999999999999999998763321 2455778899999999999999999988653211
Q ss_pred -----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 315 -----KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 315 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
......+..+|.++...|++++|...+.+++...... ..+.....+..+|.++.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY---------------------QPQQQLQCLAMLAKISL 623 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc---------------------CchHHHHHHHHHHHHHH
Confidence 1123446678888999999999999999887632210 11223456677899999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCC---HHHH----HHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHh
Q psy3014 390 KNGKYADAVKEYTEAINRNPDD---PKYY----SNRAACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQG 458 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~ 458 (570)
..|++++|...+.++....+.. .... ......+...|+.+.|...+.......+.... .+..+|.++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 9999999999999997753321 1111 11234455678999999998776653322221 24678999999
Q ss_pred CCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHhcCCHH
Q psy3014 459 MQQQSKAIDAYEKALELD------ASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~e 498 (570)
.|++++|...+++++... +....++..++.++...|+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999863 2334577889999999998543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=105.55 Aligned_cols=116 Identities=13% Similarity=0.233 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
.|++++..+|++....+.+|.++...|++++|+..+++++..+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3445555555555555555555555555555555555555555554 45555555555555555555555555554
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 349 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
.+|.++..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 80 ------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 ------------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ------------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44445555555555555555555555555555555554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=122.57 Aligned_cols=115 Identities=26% Similarity=0.494 Sum_probs=110.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+...|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 461 QQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++|+..|+++++++|+++.+...++.|..++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=125.07 Aligned_cols=115 Identities=34% Similarity=0.560 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 92 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
+|++++|+..|+++++++|++..+...+..+....
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888886663
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-11 Score=106.99 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=92.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchh---hchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILF---SNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
.+++.++..|..++..|+|++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3678899999999999999999999999999999986554 8999999999999999999999999998864 678
Q ss_pred hHHHHHHhhcc------------------CHHHHHHHHHHhhccCCCcHHH
Q psy3014 83 SRKGSALSYLG------------------RYKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 83 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~ 115 (570)
+.+|.++...+ ...+|+..|++.++..|+..-+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 99998865554 1357889999999999987644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-11 Score=103.21 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ---NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++..|..++..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++..|+++....+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 466788899999999999999999999999999986654 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 323 RIGNCYKKMED------------------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 323 ~l~~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
.+|.++...+. ..+|+..|++.+...|+..........- ......-..--+..
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl---------~~l~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL---------VFLKDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 99988655431 2467788888888777643221111100 00111112223355
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 666666777777777777777666653 4466666666666666666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=105.11 Aligned_cols=108 Identities=26% Similarity=0.283 Sum_probs=88.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
.+++.++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998886 56789999999999999999999999999999865 588
Q ss_pred hHHHHHHhhcc-----------CHHHHHHHHHHhhccCCCcHHHH
Q psy3014 83 SRKGSALSYLG-----------RYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 83 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
+.+|.++..+. ...+|+..|+..+...|++..+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 99999876653 34589999999999999876543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-11 Score=102.64 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
..+..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++....++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998876 67889999999999999999999999999999999889999
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3014 322 QRIGNCYKKME-----------DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 322 ~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (570)
+.+|.++.... ...+|+..|+..+...|+..........-.. +......--+..|..|++
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~---------l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE---------LRNRLAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 99999877653 2347788888888877764322111110000 111122233456777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcChHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAAFDLG 431 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A 431 (570)
.|.|..|+..++.+++..|+.+ .++..++.+|.++|..+.|
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777777777777753 4566777777777776643
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-13 Score=118.53 Aligned_cols=238 Identities=19% Similarity=0.195 Sum_probs=170.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.....+...|+.||.+|.|++||.+|.+++..+|.++..+.++|.+|++++.|..|...|+.++.++.....+|-++|.+
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
-..+|...+|.+.++.++.+.|++.+....++.+........
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I-------------------------------------- 216 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKI-------------------------------------- 216 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhH--------------------------------------
Confidence 999999999999999999999998887766555432200000
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
.....++. ..+ .......-
T Consensus 217 -~~KsT~G~----------------------------~~A--------------------------------~Q~~~Q~l 235 (536)
T KOG4648|consen 217 -ATKSTPGF----------------------------TPA--------------------------------RQGMIQIL 235 (536)
T ss_pred -HhhcCCCC----------------------------Ccc--------------------------------ccchhhhc
Confidence 00000000 000 00000000
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.....|..+...|.++.++.++.+-+..+..+...... +..+.+..+++.++....+++..+|.. .......|.+-
T Consensus 236 ~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~---~~~~s~~~~A~ 311 (536)
T KOG4648|consen 236 PIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP---MPDTSGPPKAE 311 (536)
T ss_pred cccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc---CcccCCCchhH
Confidence 01124667777888888888888777665555444334 666777778888888888877776665 34444444444
Q ss_pred HHcCCHHHHHHHHHHHhcccC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.-.|...++...++.++...|
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred HHHhhhhhcCcchhheeeecc
Confidence 455566666666776666443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=106.07 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH
Q psy3014 278 PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357 (570)
Q Consensus 278 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 357 (570)
|....+++..+..++..|++++|...+...+...|++ +..+...+.++...++..+|.+.+++++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N---~~~~~~~~~i~~~~nk~~~A~e~~~kal~----------- 368 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN---PYYLELAGDILLEANKAKEAIERLKKALA----------- 368 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------
Confidence 5556666666666666666666666666666666666 55666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 358 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
.+|..+..+.++|.++++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.
T Consensus 369 ---------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~----- 428 (484)
T COG4783 369 ---------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL----- 428 (484)
T ss_pred ---------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----
Confidence 566666666666666666666666666666666666666666666666666666554443
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
...+..+...|++++|+..+..+.+..
T Consensus 429 ------------~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 429 ------------LARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ------------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 234455555666666666666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=105.76 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+++..+..+...|++++|+..+...+. ..|+++..+...+.+++..|+..+|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------------------------~~P~N~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------------------------AQPDNPYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCChHHH
Confidence 67778888888888888888888888777 7788888888888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.+.+++++..+|+.+..+.++|..+.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|...+-..+.+..
T Consensus 360 ~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G 439 (484)
T COG4783 360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG 439 (484)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred CcHHHHHHHHHHHHHhcC
Q psy3014 478 SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~ 495 (570)
.-..+...+..+..+.+.
T Consensus 440 ~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 440 RLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 777777777777776654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-10 Score=95.72 Aligned_cols=318 Identities=13% Similarity=0.103 Sum_probs=219.2
Q ss_pred HhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCc
Q psy3014 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGD 134 (570)
Q Consensus 55 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 134 (570)
+++..+|..|++++..-.+.+|.+..++..+|.||+...++..|..+|++.-...|.........+..+.......+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD--- 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD--- 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH---
Confidence 37888999999999999999999999999999999999999999999999999999887766655554443110000
Q ss_pred cccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCC
Q psy3014 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVD 214 (570)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (570)
.......+..+
T Consensus 97 -----------------------------ALrV~~~~~D~---------------------------------------- 107 (459)
T KOG4340|consen 97 -----------------------------ALRVAFLLLDN---------------------------------------- 107 (459)
T ss_pred -----------------------------HHHHHHHhcCC----------------------------------------
Confidence 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 215 PQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER 294 (570)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 294 (570)
..-..+.....+-+.+..+++..+....++.-. .++.....+.|.+.++.
T Consensus 108 ----------------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 108 ----------------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKE 157 (459)
T ss_pred ----------------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeecc
Confidence 002234445556677778888888777665321 15677888899999999
Q ss_pred cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3014 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID 374 (570)
Q Consensus 295 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 374 (570)
|+++.|++-|+.+++...-. +-.-++++.+.++.+++..|+++...++... +..+
T Consensus 158 gqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG----------------------~r~H 212 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERG----------------------IRQH 212 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh----------------------hhcC
Confidence 99999999999999887776 6778889999999999999999888877622 2245
Q ss_pred hh-------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcC
Q psy3014 375 PV-------------------------KAEEAKERGNELFKNGKYADAVKEYTEAINRN--PDDPKYYSNRAACYTKLAA 427 (570)
Q Consensus 375 ~~-------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~ 427 (570)
|. -.+++...+-++++.|+++.|.+.+...--.. .-+|..+.+++..- ..++
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~ 291 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR 291 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence 54 23455566777888888888876554322111 12566777777543 3456
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhcCCHHHHHH
Q psy3014 428 FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-----EAVEGYRQCSIAVSSNPEEVRK 502 (570)
Q Consensus 428 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~e~~~~ 502 (570)
+.....-+.=.+.++|--+..+.++-.+|.+..-|+-|-..+ .-+|+.. +..+.|-..+....-.+|...+
T Consensus 292 p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~K 367 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPYLYDLLDALITCQTAPEEAFK 367 (459)
T ss_pred ccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHH
Confidence 777777777788888866777788888888887777776543 4455432 2334455555555556666655
Q ss_pred HH
Q psy3014 503 RA 504 (570)
Q Consensus 503 ~~ 504 (570)
++
T Consensus 368 KL 369 (459)
T KOG4340|consen 368 KL 369 (459)
T ss_pred HH
Confidence 54
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-13 Score=114.14 Aligned_cols=241 Identities=15% Similarity=0.118 Sum_probs=193.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
....|..|+++|.|++|+.||.+++..+|.|+..+.++|..|++.+++..|...++.++.++..+ ..+|.+.|.+-.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y---~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY---VKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH---HHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999888 999999999999
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH---------HHHHHHHHHHCCCHHHHHHH
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE---------AKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~A~~~ 400 (570)
.+|+..+|.+.++.++.+.|...-+...-.--.....-+-+....|....+ ...-|..+...|.++.++.+
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~ 256 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD 256 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence 999999999999999999887432222211111111111122222221111 22347777888899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+...+.....+.....+ +..+.+..+++.|+..+.+++..+|.........|..-.-.|...++...++.++.+.|.+.
T Consensus 257 ~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 257 VVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred eeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 88877766665555555 77888899999999999999999998877777777777778899999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy3014 481 EAVEGYRQCSIAVS 494 (570)
Q Consensus 481 ~~~~~l~~~~~~~~ 494 (570)
.+...+.+.-..+-
T Consensus 336 ~~~~~~sr~~~~ii 349 (536)
T KOG4648|consen 336 TPKETETRKDTKIV 349 (536)
T ss_pred cchhhhhhhccccc
Confidence 99888877765553
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=99.50 Aligned_cols=120 Identities=31% Similarity=0.527 Sum_probs=110.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChh
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.....++.+...|+.+|..|+|++|..-|..||...|.. ...|.+.|.++++++.++.|+..+.++|+++|.+..
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 335678899999999999999999999999999999875 457889999999999999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++.++|.+|.++.++++|+..|+++++.+|....+...++++-..
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999888877766443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-12 Score=98.09 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSR 84 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 84 (570)
++.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5788999999999999999999999999999886 4688999999999999999999999999998885 678999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (570)
+|.++...|++++|+..++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999998776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=94.49 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIR 451 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 451 (570)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
+|.++..+|++++|..+++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999999999999999999999999999876544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=92.06 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=111.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
+.++.-+..+..|.-++..|++++|...|+-..-.+|.++..|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.|+..+|+...|+.+|+.+++ .|.+..+...-...+..+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999 68877776655555554443
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.3e-11 Score=106.23 Aligned_cols=118 Identities=34% Similarity=0.506 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----C-----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPD----D-----------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
......|..+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+..++++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 34566799999999999999999999875321 1 23799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+|..++|+.|.++..+|+++.|+..|+++++++|+|..+...|..|..+....
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888763
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=85.62 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCC
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-QQSKAIDAYEKALELDA 477 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p 477 (570)
++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677788888888888888888888888888888888888888888887 68888888888888777
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=99.44 Aligned_cols=124 Identities=18% Similarity=0.134 Sum_probs=110.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLD 442 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 442 (570)
.++..+..+|++++-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.+++...+ ..++...+++++..+
T Consensus 144 ~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 144 RLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 33444448999999999999999999999999999999999999999999999999887654 678999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|++..+.+.+|..++..|+|.+|...++..++..|.+..-...+...
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999998876655444433
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=107.70 Aligned_cols=118 Identities=25% Similarity=0.423 Sum_probs=108.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------cchhhchhHHHhcccCHHHHHHHHhchh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---------------HILFSNRSAAFAKEGNYEKALEDAEKTI 72 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al 72 (570)
-..+......|+.+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+++++
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3567788899999999999999999999998763311 4578999999999999999999999999
Q ss_pred ccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 73 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
..+|+|+.++++.|.++..+|+++.|+..|+++++++|+|..+...+..+...
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=96.78 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=97.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 345667789999999999999999999999999887653 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC--------------HHHHHHHHHHHHhhCCCc
Q psy3014 450 IRKGKILQGMQQ--------------QSKAIDAYEKALELDASN 479 (570)
Q Consensus 450 ~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 479 (570)
..+|.++...|+ +.+|.+++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999888 678888999999999987
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=89.09 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+...+.........++...+...++..+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+......+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34444555555556888888888888888888887 456677888888888888888888888887776665667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.++.++...|++++|+..++... ..+..+.++..+|.++...|++++|+..|+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~---------------------------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIP---------------------------DEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc---------------------------CcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888886632 344556677778888888888888888888
Q ss_pred HHH
Q psy3014 403 EAI 405 (570)
Q Consensus 403 ~al 405 (570)
+++
T Consensus 143 ~Al 145 (145)
T PF09976_consen 143 KAL 145 (145)
T ss_pred HhC
Confidence 764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-12 Score=87.56 Aligned_cols=67 Identities=36% Similarity=0.545 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc-CHHHHHHHHhchhccCC
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKTISLKP 76 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 76 (570)
++..|..+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777777777777777777 67777777777777776
|
... |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-07 Score=87.35 Aligned_cols=347 Identities=14% Similarity=0.114 Sum_probs=230.0
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCC-----cchhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL-DGTN-----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
+++.|.+++.|...... ..|+..+-+..|.+|++. +|.. ...|...|..|...|+.+.|...|+++++..-.
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 34555666666655443 366777777777777653 4542 345667777777777777777777777766432
Q ss_pred ----ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCC
Q psy3014 78 ----WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDP 153 (570)
Q Consensus 78 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (570)
-..+|...|..-....+++.|++..+++... |.++..-.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~------------------------------------ 462 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEY------------------------------------ 462 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhh------------------------------------
Confidence 2456777777777777777777777776654 33222000
Q ss_pred CCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 154 RTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPA 233 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (570)
..+...
T Consensus 463 ----------------------------yd~~~p---------------------------------------------- 468 (835)
T KOG2047|consen 463 ----------------------------YDNSEP---------------------------------------------- 468 (835)
T ss_pred ----------------------------hcCCCc----------------------------------------------
Confidence 000000
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-
Q psy3014 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA- 312 (570)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~- 312 (570)
....--.....|...+......|-++.....|++.+.+.--.|....+.|..+....-+++|.+.|++.+.+.+
T Consensus 469 -----vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 469 -----VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred -----HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 00000134667778888888999999999999999999988999999999999999999999999999998864
Q ss_pred -ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHH
Q psy3014 313 -DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA-EEAKERGNELFK 390 (570)
Q Consensus 313 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 390 (570)
.-..+...|......-...-..+.|...|+++++..| |..+ ..+...+..-..
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-------------------------p~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-------------------------PEHAKTIYLLYAKLEEE 598 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-------------------------HHHHHHHHHHHHHHHHH
Confidence 3323344444444444445578889999999988443 2222 234455666667
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhCCCHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA----AFDLGLKDCETCLKLDPKFL--KGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 464 (570)
-|--..|+..|+++-...+... .+.+=.+|...- -...-...|++|++.-|+.. ..-...+..-.+.|..+.
T Consensus 599 ~GLar~amsiyerat~~v~~a~--~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVKEAQ--RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 7888889999998876543211 111222222110 12345677888888877643 334557888888999999
Q ss_pred HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcC
Q psy3014 465 AIDAYEKALELD-A-SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 465 A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~ 495 (570)
|...|.-+-++. | .+++.|........+.|+
T Consensus 677 ARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 999998888875 3 467888888888888888
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=91.04 Aligned_cols=116 Identities=34% Similarity=0.606 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDP-----KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..+..-|.-++..|+|.+|..-|..|+.+.|..+ ..|.+.|.+..+++.++.|+..+.++++++|.+..++.+.|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455568889999999999999999999999753 47889999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+|.++..|++|++.|+++++.+|...++....+++--...
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999888777666544444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-11 Score=89.43 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=74.0
Q ss_pred HcCCHHHHHHHHHHHHccCCC--CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
.+|+|++|+..|++++..+|. +...++.+|.|+++.|++++|+..+++ ...+|.++..++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHh
Q psy3014 101 TYEEG 105 (570)
Q Consensus 101 ~~~~a 105 (570)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=86.69 Aligned_cols=99 Identities=36% Similarity=0.584 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q psy3014 460 QQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~ 478 (570)
|++++|..++.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-09 Score=93.13 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhcc----CCC--ChhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISL----KPD--WPKG 81 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~ 81 (570)
+......|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++..--..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999998765443 233445667888899999887765444332 222 2467
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCC
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD 161 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (570)
+.++++.+...-++.+++.+-+..+.+....+.-
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~---------------------------------------------- 119 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ---------------------------------------------- 119 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc----------------------------------------------
Confidence 8888999988888888888777666654322100
Q ss_pred hHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy3014 162 PSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLT 241 (570)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (570)
T Consensus 120 -------------------------------------------------------------------------------- 119 (518)
T KOG1941|consen 120 -------------------------------------------------------------------------------- 119 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF- 314 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~- 314 (570)
.-......+|..+...+.++++++.|++|+...-++ ..+...+|.++-..+++++|.-+..++.++..+.
T Consensus 120 ---~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 120 ---LGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred ---ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 001223347888888999999999999999874332 3577899999999999999999999988654322
Q ss_pred ------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 315 ------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 315 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
.....+++.++..+..+|..-+|.++.+++.+..-.. -..+........+|.+|
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--------------------Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--------------------GDRALQARCLLCFADIY 256 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--------------------CChHHHHHHHHHHHHHH
Confidence 2346778899999999999999999999987732100 02344567778899999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHH-----HHHHHHHHHhcCCC------CHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDL-----GLKDCETCLKLDPK------FLKGWIR 451 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~-----A~~~~~~al~~~p~------~~~~~~~ 451 (570)
...|+.+.|..-|+.+...... ...++...|.++....-..+ |++.-++++++... -...+..
T Consensus 257 R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcr 336 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCR 336 (518)
T ss_pred HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999865322 34566777777766555554 88888888876433 2456788
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 452 KGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
++.+|..+|.-++=...+.++-+.
T Consensus 337 la~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 337 LASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHhccchhHHHHHHHHHHHH
Confidence 999999998887777777765443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=86.23 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.1
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.+..+++.|..|-..|-+.-|.--|.+++.+.|+-+.++..+|.-+...|+++.|.+.|+..++++|.+.-++.++|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
..++--|++.-|.+.+.+-.+.+|+++-
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=90.30 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
....+..+..|..++.+|++++|...|+-....+|.++..+++||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
|+..+|+...|+.+|+.++. .|.+.....
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 99999999999999999998 466554433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=88.78 Aligned_cols=99 Identities=42% Similarity=0.650 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
.++.+|..++..|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhccCCC
Q psy3014 93 GRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~ 111 (570)
|++++|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-10 Score=92.37 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..+++.+|.++...|++++|+.+|+++++..|+......++..+|.++...|++++|+..+.+++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443322234555555555555555555555555555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=91.35 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.....++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 347788999999999999999999999999887663 45899999999999999999999999999999999999999
Q ss_pred HHHHH-------hCCCHH-------HHHHHHHHHHhhCCCcH
Q psy3014 453 GKILQ-------GMQQQS-------KAIDAYEKALELDASNA 480 (570)
Q Consensus 453 ~~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 480 (570)
|.++. .+|+++ +|+.+|++++..+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99988 777766 66777777888888655
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=79.96 Aligned_cols=64 Identities=31% Similarity=0.466 Sum_probs=49.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
.+|..+...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677778888888888888888888888888888888888888888888888888888888764
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-11 Score=85.77 Aligned_cols=81 Identities=28% Similarity=0.459 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
+|+|+.|+..++++++..|. +...++.+|.|+++.|++++|+..+++ ...+|.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888888999999999999999999999
Q ss_pred HHHH
Q psy3014 469 YEKA 472 (570)
Q Consensus 469 ~~~a 472 (570)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-09 Score=96.81 Aligned_cols=221 Identities=21% Similarity=0.286 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---c
Q psy3014 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP--TD----ITFQNNIAAVYFERKEYDQCIEQYIQKIENR---A 312 (570)
Q Consensus 242 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~ 312 (570)
....-++.+...|..|...|++++|..+|.++....- ++ ...+...+.++... ++++|+.++++++.+. .
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 3445678888899999999999999999999977532 11 34556666666555 9999999999998653 3
Q ss_pred ChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 313 DFKLIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
.....+.++..+|.+|... |++++|+.+|+++.......+ ..-.....+..+|.++...
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--------------------~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--------------------SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------------------ChhhHHHHHHHHHHHHHHh
Confidence 3345588999999999998 999999999999988432110 1112355677899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHh-
Q psy3014 392 GKYADAVKEYTEAINRNPDD-------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-----KGWIRKGKILQG- 458 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~- 458 (570)
|+|++|+..|+++....-++ ...++..+.|+...|++..|...+++....+|... .....+-.++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 99999999999998753221 23567788899999999999999999999988653 233344444433
Q ss_pred -CCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 459 -MQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 459 -~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
...+..|+..|.+.-.+||=...++
T Consensus 249 D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp -CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHcccCccHHHHHHHH
Confidence 4578888888888877776443333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=98.81 Aligned_cols=119 Identities=21% Similarity=0.210 Sum_probs=108.2
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc---CHHHHHHHHhchhccCCCCh
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG---NYEKALEDAEKTISLKPDWP 79 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~ 79 (570)
.+...|.+++.|..+|.+|+..|+++.|...|.+++++.|+++..+..+|.++..+. ...++...+++++..+|+++
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence 467889999999999999999999999999999999999999999999999987653 46789999999999999999
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
.+.+.+|..++..|+|.+|+..++..++..|.+......+-.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 999999999999999999999999999999887655444333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-09 Score=84.65 Aligned_cols=199 Identities=12% Similarity=0.002 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
+...+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.+ ..+..
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~l 137 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHL 137 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHh
Confidence 347789999999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH--HHCCCHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL--FKNGKYADAVKE 400 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~ 400 (570)
+.|..+..-|++.-|...+.+-.+ .+|++|--- -++| ...-+..+|...
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ--------------------------~D~~DPfR~---LWLYl~E~k~dP~~A~tn 188 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQ--------------------------DDPNDPFRS---LWLYLNEQKLDPKQAKTN 188 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHh--------------------------cCCCChHHH---HHHHHHHhhCCHHHHHHH
Confidence 999999999999999999999888 555554211 1122 233456667665
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+.+-.+...+..+.|...+. .+|+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++
T Consensus 189 L~qR~~~~d~e~WG~~iV~~---yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 189 LKQRAEKSDKEQWGWNIVEF---YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHhccHhhhhHHHHHH---HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 54443333334444443332 2333221 12233333322222 4678889999999999999999999998
Q ss_pred hhCC
Q psy3014 474 ELDA 477 (570)
Q Consensus 474 ~~~p 477 (570)
..+-
T Consensus 265 annV 268 (297)
T COG4785 265 ANNV 268 (297)
T ss_pred HHhH
Confidence 7654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-11 Score=81.26 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (570)
.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-09 Score=85.02 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
.+.+.+|.+++..|++++|...|+.++...|+. +.+.+.+|.++...|++++|+..++. +.-.+-.+.++..+|.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 344444444444555555555555544443332 22444455555555555555555433 12222233344445555
Q ss_pred HHhCCCHHHHHHHHHHH
Q psy3014 456 LQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~a 472 (570)
+...|++++|+..|++|
T Consensus 128 ~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHCCCHHHHHHHHHHh
Confidence 55555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-09 Score=94.45 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHH
Q psy3014 377 KAEEAKERGNEL-FKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGW 449 (570)
Q Consensus 377 ~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 449 (570)
....++..+..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346667777765 66899999999999999999987 579999999999999999999999999988877 57889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
+.+|.++..+|++++|+..|+++++..|+...+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999988765443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=98.44 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCC---ChhHH
Q psy3014 10 EVSLLKDKGNAA-LQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPD---WPKGY 82 (570)
Q Consensus 10 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 82 (570)
+....+..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 357788888887 66899999999999999999998 479999999999999999999999999988887 57899
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHH
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 119 (570)
+.+|.++..+|++++|...|+++++..|+...+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~ 257 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ 257 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9999999999999999999999999999988765543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=96.97 Aligned_cols=185 Identities=23% Similarity=0.247 Sum_probs=136.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcCCHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNA 337 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A 337 (570)
.++++|...|++| |.+|...|++++|...|.++.... .+.......+...+.++... ++++|
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 3677777777765 677888999999999999987443 22233466777777777666 99999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC--CC---
Q psy3014 338 KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN-GKYADAVKEYTEAINRNP--DD--- 411 (570)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p--~~--- 411 (570)
+.+|++++... ...|++ ..-+..+..+|.+|... |++++|+++|++|++... +.
T Consensus 94 i~~~~~A~~~y------~~~G~~--------------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 94 IECYEKAIEIY------REAGRF--------------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHH------HHCT-H--------------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHH------HhcCcH--------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 99999998732 122211 22356778899999999 999999999999998732 12
Q ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 412 -PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 412 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
...+..+|.++...|+|++|++.|+++....-++ ...++..+.|+...|++..|...+++....+|...
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 3477889999999999999999999998754221 13456788899999999999999999999998643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=102.34 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=41.7
Q ss_pred HhcCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHc
Q psy3014 274 VEFDPTDITFQ--NNIAAVYFERKE---YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 274 l~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
....|.++.+| +..|.-+...++ ...|+.+|+++++.+|++ +.++..++.++...
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~ 389 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVR 389 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHH
Confidence 34567777766 556666665544 789999999999999999 88888888777543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-09 Score=89.07 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=76.8
Q ss_pred cCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++...|+....+.++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 44566666665555555544 5666888888888888888888888888776664334567888888888888888888
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
..+++++. ..|.....+..+|.++...|
T Consensus 93 ~~~~~Al~--------------------------~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 93 EYYFQALE--------------------------RNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHH--------------------------hCcCcHHHHHHHHHHHHHhh
Confidence 88888887 66666677777777776333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-08 Score=82.80 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 83 (570)
.+..|+..|...++.|+|++|++.|+.+....|.++ .+...++.++++.+++++|+..+++-+.+.|+++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 578999999999999999999999999999988764 5688899999999999999999999999999865 4577
Q ss_pred HHHHHHhhc--------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 84 RKGSALSYL--------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 84 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
..|.++... .-..+|+..|+..+...|+..-+-.....+...
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~------------------------------ 162 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL------------------------------ 162 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH------------------------------
Confidence 788887643 234578889999999999876543333222211
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
T Consensus 163 -------------------------------------------------------------------------------- 162 (254)
T COG4105 163 -------------------------------------------------------------------------------- 162 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
....+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-+-...|
T Consensus 163 -------~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 163 -------NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred -------HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 00223334568999999999999999999999987765 46778888889999999998876655445555
Q ss_pred Ch
Q psy3014 313 DF 314 (570)
Q Consensus 313 ~~ 314 (570)
++
T Consensus 236 ~s 237 (254)
T COG4105 236 DS 237 (254)
T ss_pred CC
Confidence 55
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-09 Score=101.91 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--
Q psy3014 318 AKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-- 392 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 392 (570)
+.-++..|..+...+. ...|+.+|+++++ .+|+.+.++-.++.++....
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--------------------------ldP~~a~a~A~la~~~~~~~~~ 392 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--------------------------SEPDFTYAQAEKALADIVRHSQ 392 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHhc
Confidence 3444555666655443 6677777777777 89999999888888775432
Q ss_pred ------CHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 393 ------KYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 393 ------~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
+...+.....+++.. +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHH
Confidence 244566666666664 777889999999999999999999999999999999 47899999999999999999
Q ss_pred HHHHHHHHHhhCCCcHH
Q psy3014 465 AIDAYEKALELDASNAE 481 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~ 481 (570)
|++.|++|+.++|.++.
T Consensus 472 A~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 472 AADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCCCch
Confidence 99999999999999885
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-07 Score=80.31 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.++++.|+...++.+.+.|.++....+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 47889999999999999999999999999998876 568899999999999999999999999999999999899999
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy3014 323 RIGNCYKKM--------EDWKNAKVYFEKSMSEHRTPE----IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 323 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (570)
..|.++... .-...|+..|+..+...|+.. ....+..+..+ .+.--...|..|.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~-------------LA~~Em~IaryY~k 179 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA-------------LAGHEMAIARYYLK 179 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 999987653 224567788888888887743 22222221111 12223456778888
Q ss_pred CCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 391 NGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
.|.+-.|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|++.
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 888888888888888876654 45677777788888888877765544444445443
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-07 Score=78.88 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
....-|.++...|++++|++..... .+.++...-..++.++.+.+-|.+.+++....+.+. ++..|+..+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-----tLtQLA~aw 179 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-----TLTQLAQAW 179 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-----HHHHHHHHH
Confidence 3444567777888888888777662 445666666677778888888888888877776554 333344433
Q ss_pred HH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 329 KK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 329 ~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.. .++..+|.-+|+..-+ ..|..+.....++.+++.+|+|++|...++.+
T Consensus 180 v~la~ggek~qdAfyifeE~s~--------------------------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSE--------------------------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhc--------------------------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 32 2346666666666655 45556666777777777777777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHH-HHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLK-DCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~ 447 (570)
+..++++++++.++-.+-...|...++.. .+.+....+|+++.
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 77777777777777777777777655544 33444455666553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=92.72 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 249 KEKELGNEAYKKKN---FEEALAHYNKAV---EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 249 ~~~~la~~~~~~~~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.++..|...+..+. .+.|+.+|.+++ +++|....++..++.|++..--
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-------------------------- 310 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-------------------------- 310 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH--------------------------
Confidence 33555655544443 445666777777 6677777777777766653300
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
+|..- ......+|....+++++ .+|.++.++..+|.+....++++.|...|+
T Consensus 311 -~g~~~-~~~~~~~a~~~A~rAve--------------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~ 362 (458)
T PRK11906 311 -HGKSE-LELAAQKALELLDYVSD--------------------------ITTVDGKILAIMGLITGLSGQAKVSHILFE 362 (458)
T ss_pred -hcCCC-chHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 00000 11223445555555555 566666666666666666666666666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI-LQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al 473 (570)
+++.++|+.+.+|+..|.+....|+.++|++.++++++++|....+-...-.+ .+-....++|+..|-+--
T Consensus 363 rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 363 QAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 66666666666666666666666666666666666666666554443332233 233344556666555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-08 Score=91.95 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=129.8
Q ss_pred HhcCCCCH---HHH----HHHHHHHHHhc---CHHHHHHHHHHHh---hcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 274 VEFDPTDI---TFQ----NNIAAVYFERK---EYDQCIEQYIQKI---ENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 274 l~~~p~~~---~~~----~~la~~~~~~~---~~~~A~~~~~~~l---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
....|.+. .+| +..|...+..+ ..+.|..+|.+++ .++|++ +.++..++.++...
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~--------- 308 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSL--------- 308 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHH---------
Confidence 44445555 444 66666665554 3567899999999 889998 99999999887642
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 420 (570)
+. +|..- ...+..+|....+++++++|.++.++..+|.
T Consensus 309 ---~~--------------------------------------~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 309 ---AL--------------------------------------HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred ---HH--------------------------------------hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00 01111 1234568899999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 421 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
+....++++.|...|++|+.++|+.+.+|+..|.+....|+.++|.+.++++++++|....+-..--++
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~ 415 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV 415 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876665443333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=84.51 Aligned_cols=203 Identities=27% Similarity=0.318 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVE--FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.......+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+..++...+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---chHHHHH
Confidence 56677788888888889999988888887 677888888888888888888999999999888877665 3444444
Q ss_pred HH-HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHCCCHHHHHHH
Q psy3014 325 GN-CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP---VKAEEAKERGNELFKNGKYADAVKE 400 (570)
Q Consensus 325 ~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~ 400 (570)
+. ++...|+++.|...+.+++. ..| .........+..+...++++.|+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE--------------------------LDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 55 78888888888888888866 333 3455556666667888899999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 401 YTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 401 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+.+++...+. ....+..++.++...++++.|+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999888 68889999999999999999999999999998887777778888888777899999999999999887
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.8e-07 Score=79.98 Aligned_cols=169 Identities=27% Similarity=0.413 Sum_probs=111.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA-VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+...|......+++..++..+..++...+.+.......+. ++...|+++.|...+.+++...|............+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 3344555555555666666666666665555444444444 666777777777777776664442001144555555556
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
...++++.++..+.+++. ..+. ....+..++..+...+++..|+..+..++..
T Consensus 178 ~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 178 EALGRYEEALELLEKALK--------------------------LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHhcCHHHHHHHHHHHHh--------------------------hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 667777777777777776 4555 4666777777777777778888888888777
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.|.....+..++..+...+.++.+...+.+++...|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7776666777777777666688888888888877776
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.2e-07 Score=75.19 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
+...+..-|.++...|++++|.+....... .++...-..++.++.+.+-|...+++..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~--------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~------------- 165 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGEN--------LEAAALNVQILLKMHRFDLAEKELKKMQQ------------- 165 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 334555667778888999999888776322 44555556677788888888888888876
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELF----KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.+.+ .++..++..+. ..+++.+|.-+|++.-+..|..+......+.|+..+|+|++|...+
T Consensus 166 -------------ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 166 -------------IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred -------------cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 3322 23333444433 2346888888888888878888888889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhhCCCcHHHH
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAID-AYEKALELDASNAEAV 483 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~ 483 (570)
+.++..+++++..+.++-.+-...|...++.+ ...+....+|+++-+.
T Consensus 231 ~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 231 EEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 99999999999999888888888887766654 4445555667765543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-06 Score=78.70 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=182.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+.+-+....++..+-.|+|+.|.+-|+..+. +|.- ...+..|-..-.+.|..+.|..+.+.+-...|.-++++...-.
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 4455666777777778888888888877664 3331 1112222222345778888888888888888887777777777
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.....|+|+.|++..+......--.. .+....
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r----------------------------------------------- 229 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR----------------------------------------------- 229 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH-----------------------------------------------
Confidence 77778888888877765443211000 011111
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 230 -------------------------------------------------------------------------------- 229 (531)
T COG3898 230 -------------------------------------------------------------------------------- 229 (531)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
+..+...+... -..+...|...-.+++++.|+-..+-..-+..+++.|+..++-.+++.+.+..|.. . ++.
T Consensus 230 AvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----~----ia~ 300 (531)
T COG3898 230 AVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----D----IAL 300 (531)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----H----HHH
Confidence 11111111111 23457788899999999999999888899999999999999999999999988874 2 334
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.|....--+.++.-++++-.+ ..+.|++.+.....+...+..|++..|..--+.+..
T Consensus 301 lY~~ar~gdta~dRlkRa~~L-----------------------~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 301 LYVRARSGDTALDRLKRAKKL-----------------------ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHhcCCCcHHHHHHHHHHH-----------------------HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444443334444445444331 117788888888888888888999888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHh-cChHHHHHHHHHHHhc
Q psy3014 407 RNPDDPKYYSNRAACYTKL-AAFDLGLKDCETCLKL 441 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 441 (570)
..|. ..++..++.+-... |+-.++..++-+++..
T Consensus 358 ~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8875 34566677776554 8888888888888864
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-07 Score=94.07 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=117.4
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
-|.-+...+.|++|.+.. +...++..|..+|...+++++|.++++..++..... ..+|...|..+++.++-+.|..
T Consensus 1510 yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---RKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---hhHHHHHHHHHhcccHHHHHHH
Confidence 355566667777776654 335677777778888888888888888888776655 7778888888888888788888
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 417 (570)
.+.+|+. .-|. ..+.....+++-++.|+.+.+...|+..+..+|...+.|.-
T Consensus 1586 lL~rAL~--------------------------~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1586 LLKRALK--------------------------SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred HHHHHHh--------------------------hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 8888877 3343 55666667777788888888888888888888888888887
Q ss_pred HHHHHHHhcChHHHHHHHHHHHhcC--CCCHHHHHH
Q psy3014 418 RAACYTKLAAFDLGLKDCETCLKLD--PKFLKGWIR 451 (570)
Q Consensus 418 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 451 (570)
+...-.+.|+.+.+...|++++.+. |.....++.
T Consensus 1640 Yid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1640 YIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 7777777888888888888877653 333333433
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-05 Score=75.79 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=92.3
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHH
Q psy3014 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS 100 (570)
Q Consensus 21 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 100 (570)
....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999999999999999999999999988888878888888889999999999999999999
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 101 TYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 101 ~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
+|++++..+|+ .+....+-..+..
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 99999999999 6655555554444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-10 Score=76.44 Aligned_cols=66 Identities=24% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 22 LQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777776666655554
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=95.82 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=81.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG---WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+|+++..++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++|+++.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~----- 144 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL----- 144 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch-----
Confidence 467888999999999999999999999999999999998854 999999999999999999999999987321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhc
Q psy3014 484 EGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQN 528 (570)
Q Consensus 484 ~~l~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 528 (570)
.+..+..||++..+..++.+..+++....
T Consensus 145 ----------------~f~~i~~DpdL~plR~~pef~eLlee~rk 173 (453)
T PLN03098 145 ----------------KFSTILNDPDLAPFRASPEFKELQEEARK 173 (453)
T ss_pred ----------------hHHHHHhCcchhhhcccHHHHHHHHHHHH
Confidence 11234457777777777777777665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.5e-09 Score=79.92 Aligned_cols=109 Identities=22% Similarity=0.291 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCCh---hHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP---KGY 82 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 82 (570)
..+..++..|...+..|+|++|++.|+.+....|-. ..+.+.+|.+|+..|++++|+..+++-++++|+++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 357889999999999999999999999999988875 56788999999999999999999999999999875 578
Q ss_pred hHHHHHHhhccC---------------HHHHHHHHHHhhccCCCcHHHHH
Q psy3014 83 SRKGSALSYLGR---------------YKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 83 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
+..|.+++.+.. ..+|...|+++++..|++..+-.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999877 88999999999999999876543
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=83.42 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLI 317 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~ 317 (570)
.-+++.+++..+.+..++.+++.+-+..+.+.... ..+...+|..+..++.++++++.|+.+++...+. ...
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 45667788888888889999999988888764333 3577789999999999999999999999764322 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|..+....++++|.-+..++..+...-.+- ++ .......+++.++..+..+|+...|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~----d~------------~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK----DW------------SLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC----ch------------hHHHHHHHHHHHHHHHHHhcccccH
Confidence 5678899999999999999999999988743221000 00 0112345677889999999999999
Q ss_pred HHHHHHHHhcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHH-
Q psy3014 398 VKEYTEAINRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSK- 464 (570)
Q Consensus 398 ~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~- 464 (570)
.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+...... ...++...+.++....-..+
T Consensus 226 ~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998762 224557788999999999999999999999875322 24455666666655443333
Q ss_pred ----HHHHHHHHHhhCCC------cHHHHHHHHHHHHHhcCCHH
Q psy3014 465 ----AIDAYEKALELDAS------NAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 465 ----A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~e 498 (570)
|++.-++++++... -...+..++.+|...|..++
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 88888888877532 12455678888888876544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=76.12 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
++.+|.++-..|+.++|+..|++++....+......++..+|..+...|++++|+..+++.+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333334444444444444444444444444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=73.56 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
...|++++|+..|++++..+|++..+++.+|.++.+.|++++|...+++++..+|+++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666665554
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=87.09 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSR 84 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 84 (570)
+..+|..|..++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3458999999999999999999999999999986 6889999999999999999999999999988775 578999
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
+|.+...+|+.++|...|+++++..|+...+...-..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999999999999999887655443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-09 Score=73.23 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=50.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
..+|...+++++|++.+++++.++|+++..+..+|.++..+|++.+|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777766655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-08 Score=73.11 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.+++.+|.++-..|+.++|+.+|++++...+.. ..++..+|.++..+|++++|+..+++.+...|++.....+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976554 56889999999999999999999999999989844447788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-06 Score=80.90 Aligned_cols=163 Identities=17% Similarity=0.062 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhch-hccCC------CC--hhHHhHH
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT-ISLKP------DW--PKGYSRK 85 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p------~~--~~~~~~l 85 (570)
......++...+...+..-.+.+.....+++.+.+..+..++..|++.+|.+.+... +...| .. .-.|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 334445566777777888888888777888999999999999999999999988653 22233 22 2357889
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|-+++.+|.|.-+..+|.++++ |......-+ +.. ..++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~----N~c~qL~~g--~~~-----------~~~~------------------------- 327 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALR----NSCSQLRNG--LKP-----------AKTF------------------------- 327 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHH----HHHHHHhcc--CCC-----------Ccce-------------------------
Confidence 9999999999999999999997 111110000 000 0000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
......
T Consensus 328 --------------------------------------------------------------------------tls~nk 333 (696)
T KOG2471|consen 328 --------------------------------------------------------------------------TLSQNK 333 (696)
T ss_pred --------------------------------------------------------------------------ehhccc
Confidence 000013
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 293 (570)
.-++.++.|..+...|++-.|.++|.+++...-.+|..|..+|.|.+.
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999874
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-08 Score=90.57 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=111.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+-.++...++++.|+..+++..+ .+|+ +...++.++...++..+|+..+.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~--------------------------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRE--------------------------RDPE---VAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHh--------------------------cCCc---HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455566788888888888877 5554 566789999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++...|.+...+...|..+...++++.|+...++++...|++...|+.|+.+|..+|++++|+..++.+=-..+.+....
T Consensus 226 aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~ 305 (395)
T PF09295_consen 226 ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKL 305 (395)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988775544433443343
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-07 Score=95.73 Aligned_cols=211 Identities=13% Similarity=0.019 Sum_probs=122.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-ccCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-RADF-KLIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
..+-|++.+..+|+..-.|..+-..+...++.++|.+..++++.. ++.. .....+|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344555555556666555655555555566666666666665532 2211 11122333333333333444444555555
Q ss_pred HhcccCC-------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHH
Q psy3014 344 SMSEHRT-------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKY 414 (570)
Q Consensus 344 ~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 414 (570)
|.+.... ..++.....+++|.+.++..++...+....|..+|..++++++-+.|...+.+|++.-|. +...
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 5543322 112222223333333333333344456667777777777777777777777777777776 5666
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
....|.+-++.|+.+.+...|+-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 66777777777777777777777777777777777777777777777777777777777654
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-06 Score=83.91 Aligned_cols=207 Identities=13% Similarity=0.079 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|.--|..+...|+.+.|+.+|..| .-|+.+..+..-+|+.++|..+-++. .+ ..+.+.+|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~es-----gd---~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEES-----GD---KAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHhc-----cc---HHHHHHHHH
Confidence 345555688888899999999999986 44677778888899999998766543 33 678889999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh----HHHH-------HHHHHHHHHCCCHH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK----AEEA-------KERGNELFKNGKYA 395 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~ 395 (570)
.|...|+..+|+.+|.++-.....-.+...- .+++ ....-++...|.+ +..+ ..-..+|.+.|.+.
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d--~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKD--RLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHH--HHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchH
Confidence 9999999999999998875522110000000 0000 0000011111111 0000 11123445556666
Q ss_pred HHHHHHHH-----HH-----hcCC-CCHHHHHHHHHHHHHhcChHHHHHHHHH------HHhcC----------------
Q psy3014 396 DAVKEYTE-----AI-----NRNP-DDPKYYSNRAACYTKLAAFDLGLKDCET------CLKLD---------------- 442 (570)
Q Consensus 396 ~A~~~~~~-----al-----~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~------al~~~---------------- 442 (570)
+|++..=+ ++ .++| .+|..+..-+..+....+|++|+..+-. |+.+.
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcC
Confidence 65543211 11 2344 3677888888888888899998876543 44331
Q ss_pred CC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 443 PK---------FLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 443 p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
|. ....+..+|.++.++|.|..|-+-|.+|
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 1356778999999999999999888776
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-08 Score=83.14 Aligned_cols=97 Identities=10% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
.++.|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+|++|...|..+.+..|+++..+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6666666666666666666666666666654 4566666666666666666666666666666666555666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q psy3014 327 CYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~ 346 (570)
+...+|+.++|...|+++++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666666
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.6e-07 Score=81.40 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=98.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HccCCC--------CcchhhchhHHHhcccCHHHHHHHHhchhc-c----
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEA-IKLDGT--------NHILFSNRSAAFAKEGNYEKALEDAEKTIS-L---- 74 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~---- 74 (570)
..+.+++.++..++..|+|.+|.+.+... +...|. .-..|.++|.+++++|.|.-+..+|.+|+. .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999988654 222332 235678999999999999999999999995 1
Q ss_pred ----CC---------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 75 ----KP---------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 75 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.| ...+..++.|..|...|++-.|.++|.++......++..|..++.+...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12 2456889999999999999999999999999999999999999988765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-08 Score=89.30 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.+-.++...++++.|+..+++..+.+|+. ...++.++...++..+|+..+.+++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev------~~~LA~v~l~~~~E~~AI~ll~~aL~------------------- 228 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV------AVLLARVYLLMNEEVEAIRLLNEALK------------------- 228 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH------HHHHHHHHHhcCcHHHHHHHHHHHHH-------------------
Confidence 34445566788999999999988877653 44578888888888899999988887
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
..|.+...+...+..+...++++.|+.+.++++...|++...|+.||.+|...|+++.|+..++.+-
T Consensus 229 -------~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 229 -------ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888899999999999999999999999999999999999999999999999998777543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-09 Score=86.81 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=97.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
++..++.+...|+.++....|+.|+..|.++|.++|..+..+.+.+.|+++.++++.+...+.+++++.|+.+.+++.+|
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhcc
Q psy3014 87 SALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (570)
.+......+++|+..++++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=70.17 Aligned_cols=70 Identities=24% Similarity=0.467 Sum_probs=64.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
..++...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999887765543
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-05 Score=78.98 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
-..|++.+..+...++.+.|+++|+++-. +. -.+...+.++..+++.|-+- ..+ ...|..-|.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~-----ha-----fev~rmL~e~p~~~e~Yv~~---~~d----~~L~~WWgq 920 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGV-----HA-----FEVFRMLKEYPKQIEQYVRR---KRD----ESLYSWWGQ 920 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCC-----hH-----HHHHHHHHhChHHHHHHHHh---ccc----hHHHHHHHH
Confidence 34677888888889999999999998521 11 01222233444444444221 111 345555666
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
.....|+.+.|+.+|..+-.-..-..+.-.+|+.++|-...+ ...+-.+.+.+|..|...|++.+|+..|.+|-.
T Consensus 921 YlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777777777777776654433333333344444433322 234556778899999999999999998887642
Q ss_pred ------cCCCC--HH------------HHHHHHHHHHHhc-ChHHHHHHHHHH------H-----------------hcC
Q psy3014 407 ------RNPDD--PK------------YYSNRAACYTKLA-AFDLGLKDCETC------L-----------------KLD 442 (570)
Q Consensus 407 ------~~p~~--~~------------~~~~la~~~~~~~-~~~~A~~~~~~a------l-----------------~~~ 442 (570)
+...+ .+ -....|..|...| +...|+..|.+| + .++
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 21111 01 1112233333443 444444444332 1 123
Q ss_pred C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHHHHHHcCCchHHHhhcCHHHHH
Q psy3014 443 P-KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRL 521 (570)
Q Consensus 443 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~ 521 (570)
| .++..+...+..+....+|++|...+-.+-+.. ..|..|..+-=...|+..+... |.-...+....-..
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~mT--p~Kd~~~~e~~R~~ 1146 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELMT--PTKDDMPNEQERKQ 1146 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhcC--cCcCCCccHHHHHH
Confidence 4 367777888888899999999988766554332 1222222222122232222221 11111222222222
Q ss_pred HHHHh-------hcCHHHHHHhhcCHHHHHHHHHHHhcCchhhhHHhhhhh
Q psy3014 522 ILEQM-------QNDPRALSDHLKNPEIASKIQKLVNSGLIVLAFIFLSIS 565 (570)
Q Consensus 522 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (570)
+++++ -.+-.+...+-+-+.-...+..++.+|......+|.++|
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~s 1197 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTS 1197 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeecc
Confidence 22222 223444455656666677888889999888877777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-06 Score=68.55 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.-.+.+|......|++.+|...|++++.- ....++..+..+++..+..+++..|.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------------------------~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG-------------------------IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------------------------ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 34455555555555555555555555542 33344455555555555555555555
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 399 KEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 399 ~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
..+++..+.+|. .|+....+|..+...|++..|...|+.++...|. +.+....+..+.++|+..+|..-
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 555555555543 3445555555555555555555555555555553 33444455555555554444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-07 Score=71.60 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
..+..++..|...++.|+|++|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++.+..++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 567778888888999999999999999888887765 56788889999999999999999999999999888888888
Q ss_pred HHHHHHHHHcCC
Q psy3014 322 QRIGNCYKKMED 333 (570)
Q Consensus 322 ~~l~~~~~~~~~ 333 (570)
+..|.++..+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888776544
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=70.35 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSR 84 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 84 (570)
+....+-..|..+...|+.+.|++.|.+++.+-|..+.+|.+.+.++.-+|+.++|++.+++++++.... ..++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999987543 367899
Q ss_pred HHHHHhhccCHHHHHHHHHHhhccCCCc
Q psy3014 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 85 la~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
+|.+|..+|+-+.|...|+.+-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998776543
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=64.41 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-hHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-KLIAKALQR 323 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~ 323 (570)
.....+-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-.|+.++|++.+++++++..+. .....++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3445566778899999999999999999999999999999999999999999999999999999885443 345778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.|.+|...|+.+.|...|+.+-+...
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999999987544
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-05 Score=71.91 Aligned_cols=443 Identities=12% Similarity=0.030 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCC---cchhhchhHHH-hcccCHHHHHHHHhchhccC---CCC---
Q psy3014 11 VSLLKDKGNAALQAN--NFIEAIEAYSEAIKLDGTN---HILFSNRSAAF-AKEGNYEKALEDAEKTISLK---PDW--- 78 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 78 (570)
+.++..+|..+...| +...++++++..+...|.+ +..+..+|.++ ...++.+.|...++++..+. |+.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567888888888888 8889999999998887764 44566677655 45678899999999887553 332
Q ss_pred -hhHHhHHHHHHhhcc-CHHHHHHHHHHhhccCCCcHHH----HHHHHHHHHHhhhccCCCccccccCC--CchHHHH--
Q psy3014 79 -PKGYSRKGSALSYLG-RYKESISTYEEGLKLDPNNEQM----KEAIKDVRNQEMNDMNRGDPFANLFS--DPNIFVQ-- 148 (570)
Q Consensus 79 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 148 (570)
.++.-.++.+|.... .+..|...+++++++..+.+.. ...++.+.....+...+.+.+.--.. ++..+..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 356677888888877 7788888899999888776632 34444444442222222221111000 0000000
Q ss_pred ----------hhhCCC--------------CCCCCCChHHHHHHHHHhhCchhHHhhc--cCccHHHHHHHHhcCcccCC
Q psy3014 149 ----------LQLDPR--------------TKPFLSDPSYVQMIKEIQKDPSLMTTKL--KDPRMMTTLSVLLGVNMSST 202 (570)
Q Consensus 149 ----------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 202 (570)
+-..++ ......++.-.+.++.+--.-... .++ ...+.....-..+....+..
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~-yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLS-YYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH-HHhcccchhhhHHHHHHHHHHHhcc
Confidence 000000 000011111111111110000000 000 01111111111111111100
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD----- 277 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 277 (570)
....... ....--.+.......++...-.+-++......-...|-+++|.++-++++...
T Consensus 246 st~~~~h---------------~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 246 STSSRGH---------------DEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred CCCCCCc---------------cccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 0000000 00000001111122223333344444444444456677888888888887652
Q ss_pred -CCCH--------HHHHHHHHHHHHhcCHHHHHHHHHHHhhc---ccCh----hHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3014 278 -PTDI--------TFQNNIAAVYFERKEYDQCIEQYIQKIEN---RADF----KLIAKALQRIGNCYKKMEDWKNAKVYF 341 (570)
Q Consensus 278 -p~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 341 (570)
|... ..+-.+..|-.-.|++.+|++....+.+. .|.. ...+..+..+|.....-+.++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1111 23345667777889999999888777643 3431 123677788899889999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------
Q psy3014 342 EKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------- 411 (570)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------- 411 (570)
..+.+.....+ -.+....+++.+|.+.|+-+.-.+.++. +.|.+
T Consensus 391 ~~a~k~t~~~d-----------------------l~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 391 IEATKLTESID-----------------------LQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhhHHH-----------------------HHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 99987432211 1234456789999998876554444443 34432
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---CCcHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKAIDAYEKALELD---ASNAEA 482 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~ 482 (570)
..+++..|...+.++++.+|...+.+.++.... ..-.+..+|.+....|+..++.....-++++. ||.+..
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 346778888889999999999999999987521 13345668999999999999999998888765 554433
Q ss_pred H---HHHHHHHHHhcC
Q psy3014 483 V---EGYRQCSIAVSS 495 (570)
Q Consensus 483 ~---~~l~~~~~~~~~ 495 (570)
+ ..+..++...|+
T Consensus 525 Lws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 525 LWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3 345666777776
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00018 Score=66.18 Aligned_cols=98 Identities=10% Similarity=-0.052 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-----chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH-----ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
--.+-..|.++..++++.+|.+.|.++.+...+++ +++.++-.-.+-+++.+.-...+-..-+..|+.+...+..
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34566789999999999999999999987765543 3333444444556677776666666667788888888999
Q ss_pred HHHHhhccCHHHHHHHHHHhhcc
Q psy3014 86 GSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~ 108 (570)
|...++.+.+.+|++.+......
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999988765544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-08 Score=92.03 Aligned_cols=116 Identities=35% Similarity=0.532 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..+-..|..++..+.|+.|+..|.+||+++|+++..+.+++.++++.+++..|+..+.++++.+|....+|++.|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
..++.+.+|...|+....+.|+.+.+...+..+-..
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-05 Score=67.60 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=201.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCc--chhhchhHHHhcccCHHHHHHHHhchhccCCC-ChhHHhHHHHHHhhc
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-WPKGYSRKGSALSYL 92 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 92 (570)
..|.+....|+-..|.+.-.++-++-..+. .++..-+..-+-.|+++.|.+-|+..+. +|. ..-.+-.|-.--..+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 345666667788888887777765544443 3444456666777888888888887665 332 222222233333467
Q ss_pred cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHh
Q psy3014 93 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 172 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (570)
|..+.|+.+-+++....|.-+.++..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~A------------------------------------------------------ 193 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARA------------------------------------------------------ 193 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHH------------------------------------------------------
Confidence 88888888888888877766554432
Q ss_pred hCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHH
Q psy3014 173 KDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252 (570)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (570)
T Consensus 194 -------------------------------------------------------------------------------- 193 (531)
T COG3898 194 -------------------------------------------------------------------------------- 193 (531)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcC---CCCH---HH--HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFD---PTDI---TF--QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~--~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.-......|+++.|+++.+...... ++-. .+ +...+... -.-+...|...-.+++++.|+. ..+-..-
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdl---vPaav~A 269 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDL---VPAAVVA 269 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCcc---chHHHHH
Confidence 2223345899999999998776542 2221 11 11122222 2346788999999999999999 8888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH--
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT-- 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-- 402 (570)
+..+++.|+..++-..++.+-+..|.+++ . ...++.+.|+ .++.-++
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i------------------------a-----~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI------------------------A-----LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH------------------------H-----HHHHHhcCCC--cHHHHHHHH
Confidence 99999999999999999999985543221 1 1223344454 4444444
Q ss_pred -HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhh
Q psy3014 403 -EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-QQQSKAIDAYEKALEL 475 (570)
Q Consensus 403 -~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 475 (570)
+.-.+.|++.+..+.++..-+..|++..|..--+.+....|.. .++..++.+-... |+-.++..++-++++-
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4456789999999999999999999999999999999999974 4677788888665 9999999999999874
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-05 Score=74.63 Aligned_cols=228 Identities=15% Similarity=0.103 Sum_probs=147.5
Q ss_pred hcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcc
Q psy3014 56 AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDP 135 (570)
Q Consensus 56 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 135 (570)
...+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++.....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq------------------ 81 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ------------------ 81 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH------------------
Confidence 46789999999999999999999999999999999999999999877766555555433322
Q ss_pred ccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCC
Q psy3014 136 FANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDP 215 (570)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (570)
T Consensus 82 -------------------------------------------------------------------------------- 81 (932)
T KOG2053|consen 82 -------------------------------------------------------------------------------- 81 (932)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 216 QPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
.+-.+|...|++++|..+|++++..+|+ ......+=.+|.+.+
T Consensus 82 ------------------------------------~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 82 ------------------------------------FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred ------------------------------------HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3556677799999999999999999999 888888888899999
Q ss_pred CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH---------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK---------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
.|.+-.+.--+..+..|..+ ...|.-+..+.......+ -|...+++.+....
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g----------------- 185 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRA--YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG----------------- 185 (932)
T ss_pred HHHHHHHHHHHHHHhCCccc--chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-----------------
Confidence 88876666666666777762 222333333333332222 23344444444321
Q ss_pred HHHHhcCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 367 EEKKAYIDPVK-AEEAKERGNELFKNGKYADAVKEYTEAI--NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 367 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
+-. ..-....-.++..+|++++|...+..-+ ...+.+...-..-...+...++|.+-.+...+++...+
T Consensus 186 --------k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 186 --------KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred --------ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 111 1111122234455666666666663222 22233333334445555556666666666666666666
Q ss_pred CC
Q psy3014 444 KF 445 (570)
Q Consensus 444 ~~ 445 (570)
++
T Consensus 258 Dd 259 (932)
T KOG2053|consen 258 DD 259 (932)
T ss_pred cc
Confidence 55
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-07 Score=73.47 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-----------QQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 429 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++|+.-|++|+.++|+...+++.+|.+|..++ .|++|..+|++|...+|+|...+..|..+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555555555555555555555554433 37888999999999999998888777665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0004 Score=65.43 Aligned_cols=437 Identities=10% Similarity=0.040 Sum_probs=229.6
Q ss_pred chhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhH
Q psy3014 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG 81 (570)
Q Consensus 2 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (570)
++++..|.+.++|+.+-..+-.+ -+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++..-=+ .+.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDL 88 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDL 88 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhH
Confidence 35677888999999998887666 8999999999999999999999999999999999999999999998864322 333
Q ss_pred HhH-HHHHHhhccCHHHHHH----HHHHhh---ccCCCcHHHHHHHHHHHHHhhhccCCCccccc---cCCCchHHHHhh
Q psy3014 82 YSR-KGSALSYLGRYKESIS----TYEEGL---KLDPNNEQMKEAIKDVRNQEMNDMNRGDPFAN---LFSDPNIFVQLQ 150 (570)
Q Consensus 82 ~~~-la~~~~~~g~~~~A~~----~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 150 (570)
|.. +-.+....|+...+.. .|+-++ -.++....+|......... ..+...+.. +-.-..+++...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~----vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG----VEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc----ccccccHHHHHHHHHHHHHHHHHh
Confidence 322 2233333343333222 222222 2455555556555544433 011000000 000001111111
Q ss_pred hCCCCCCCCCChHHHHHHHHHhhCc------hhHHhhccCccHHHHHHHHh-cCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 151 LDPRTKPFLSDPSYVQMIKEIQKDP------SLMTTKLKDPRMMTTLSVLL-GVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
..|-...-.--.++......+.... +....+.+..+....+..+. |......
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~--------------------- 223 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP--------------------- 223 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC---------------------
Confidence 1111100000011111111111100 00001111111222222111 1111100
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc------C--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK------N--FEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 295 (570)
. .-.......-...+.|.+.-..-...+ . -..-.=.|++++..-+..+++|+..+..+...+
T Consensus 224 ---------~-vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s 293 (656)
T KOG1914|consen 224 ---------A-VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS 293 (656)
T ss_pred ---------C-CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 0 000111112233444444333322211 1 112334578888888888999988777766666
Q ss_pred C--------------HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcccCC--------
Q psy3014 296 E--------------YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME---DWKNAKVYFEKSMSEHRT-------- 350 (570)
Q Consensus 296 ~--------------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~-------- 350 (570)
+ .+++..+|++++..-... ....++.++..-...- .++..-..+++++.....
T Consensus 294 ~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~--~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~ 371 (656)
T KOG1914|consen 294 DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE--NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQ 371 (656)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhH
Confidence 6 778888888887543221 1333444443322222 355566666666654322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh
Q psy3014 351 -PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428 (570)
Q Consensus 351 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 428 (570)
-....+..-+..|...|.++-+..-....++..-|.+ |...++..-|...|+-.++..++.+..-.....-+...|+-
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 1122333445666666666655444333444444433 45667778888888888888888777777777777777888
Q ss_pred HHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 429 DLGLKDCETCLKL--DPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 429 ~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
..|...|++++.. .|+ ....|...-..-..-|+....++.=++-....|
T Consensus 452 ~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 452 NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8888888887765 332 234555555555666777777666666555555
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-07 Score=76.81 Aligned_cols=108 Identities=24% Similarity=0.321 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCC----------cchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--------DGTN----------HILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
..+..+...|+.++..|+|.+|...|+.|+.. .|.+ ...+.+.+.|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 35678999999999999999999999999753 3443 45678999999999999999999999
Q ss_pred hhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 71 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
++..+|.+..+++.+|.++...-+..+|...|.++++++|.-..+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999999865543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-08 Score=69.86 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDCETCLKL----D---PKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
.++.++|.+|...|++++|+.+|++++.+ . |....++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555555555555555555554433 1 111334455555555555555555555555543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-05 Score=64.01 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=130.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-cccChhHHHHHHHHHHHHHHHc
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
++....+.=+++.+..-..+.+...|.. .-.+.+|....+.|++.+|...|++++. +..++ +..+..++...+..
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~ 137 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhh
Confidence 4555566677888888888888888775 4578899999999999999999999984 45666 88899999999999
Q ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 332 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
+++..|...+++..+.+|. -..++....+|..+...|++.+|...|+.++...|+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa------------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg- 192 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPA------------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG- 192 (251)
T ss_pred ccHHHHHHHHHHHhhcCCc------------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-
Confidence 9999999999999984332 134667788899999999999999999999999885
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+.+....+..+.++|+..+|...+....+
T Consensus 193 ~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 193 PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67777888999999998888776655543
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-05 Score=65.81 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-------------------ITFQNNIAAVYFERKEYDQCIEQYI 305 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~ 305 (570)
+....|...-.++.+...+++|..-+...-+.+..+ .......|.+....|...+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556667777777888888888888777666554222 1223344566666777666654443
Q ss_pred HHhh------------cccCh------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy3014 306 QKIE------------NRADF------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367 (570)
Q Consensus 306 ~~l~------------~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 367 (570)
.... ..|.+ +....+.+.+..++...|+|.-....+.+.++
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~--------------------- 205 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK--------------------- 205 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH---------------------
Confidence 3321 11111 12234555666677777777777777777776
Q ss_pred HHHhcCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 368 EKKAYID-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRN------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 368 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.. .....+..+.+.+|...+++.+|...+.+++.
T Consensus 206 -----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 206 -----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred -----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 44 6778888899999999999999999999654332 23456788889999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN---AEAVEGYRQCSIA 492 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 492 (570)
.+|.++.+..+.|.|+.-.|+...|++.++.+++..|.. ..+..+|..++.-
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999974 3444555555443
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-07 Score=75.37 Aligned_cols=117 Identities=31% Similarity=0.466 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
.-+..-|..++...+|..|+.+|.+++.++|..+..|.+.+.||++.++++.+...+.++++++|+....++.+|.+...
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 33455678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhcC
Q psy3014 459 MQQQSKAIDAYEKALELD-----ASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~ 495 (570)
...|.+|+..++++..+. |.-.++...|..+...--.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~ 132 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWE 132 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccc
Confidence 999999999999996653 2334666677666655554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=67.66 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR---NP-D---DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p-~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
|+...++..+|.++...|++++|+.+|++++++ .+ + ...++.++|.++...|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 667889999999999999999999999999976 22 2 2568999999999999999999999999875
|
... |
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=75.45 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=97.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDP-KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 463 (570)
|......|+...|+.++..|+...|... ....++|.+..+.|-...|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4444568999999999999999988643 467889999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 464 KAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.|++.|++|++++|+++.+...|-.+..+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c~~ 723 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRCMQ 723 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhh
Confidence 999999999999999999998887766533
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=82.13 Aligned_cols=164 Identities=22% Similarity=0.410 Sum_probs=100.8
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHH
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
.+..|.+++|++.|..++.++|.....+-.++.++.++++...|+..|..++.++|+....+-..|.....+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCc--HHHH------------------------------------------HHHHHHHHHhcC--------
Q psy3014 468 AYEKALELDASN--AEAV------------------------------------------EGYRQCSIAVSS-------- 495 (570)
Q Consensus 468 ~~~~al~~~p~~--~~~~------------------------------------------~~l~~~~~~~~~-------- 495 (570)
++..+.+++-+- ...+ .+.......+..
T Consensus 204 dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~~~e~~~~e~~k~~~~~~~~~~~~g 283 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYAREPEEMANPEEFKRMLKNPQYRQFLG 283 (377)
T ss_pred HHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccchhhhcChhhhhhhhccCCCCcccC
Confidence 666665554221 1110 000000000000
Q ss_pred -CH----------------------HHH---------HHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHH
Q psy3014 496 -NP----------------------EEV---------RKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIA 543 (570)
Q Consensus 496 -~~----------------------e~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (570)
.+ --. +..+..+|++...+.||.+...+....++|.+...|.+||++.
T Consensus 284 ~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~gi~ki~~dpev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~ 363 (377)
T KOG1308|consen 284 GFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIGISKILSDPEVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVM 363 (377)
T ss_pred CCcccCCCCCCCccccccccccCCCCCccccCCCcccHhhhcCchHHHHhhcChHHHhhhhhcccChHHHHHhccChHHH
Confidence 00 011 4555667888888888999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy3014 544 SKIQKLVN 551 (570)
Q Consensus 544 ~~~~~~~~ 551 (570)
..+.++..
T Consensus 364 ~~i~kl~~ 371 (377)
T KOG1308|consen 364 DVISKLSQ 371 (377)
T ss_pred HHHHHHHh
Confidence 99998754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=84.53 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=66.8
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
.+|+++..++++|.+++..|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999854 9999999999999999999999999973
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-05 Score=64.55 Aligned_cols=201 Identities=19% Similarity=0.218 Sum_probs=135.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
.+++++|.++|.++- ..|...++|..|=..|.++-... .+-...+..+...+.+|.+ +++.+
T Consensus 27 ~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 467888888888763 33444455555555555543221 1111225566666666655 48999
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC----
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN-GKYADAVKEYTEAINRNPDD---- 411 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~---- 411 (570)
|+.+++++++ ++..+|++..| +.-+..+|.+|... .++++|+.+|+++-+.....
T Consensus 92 Av~cL~~aie------Iyt~~Grf~~a--------------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 92 AVNCLEKAIE------IYTDMGRFTMA--------------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHH------HHHhhhHHHHH--------------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 9999999987 33444444333 22345677777655 88999999999998764332
Q ss_pred --HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 412 --PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 412 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
...+...|..-..+++|.+|+..|+++....-++. ..++.-|.|++-..+.-.+...+++..+++|.....
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 23566777778889999999999999887655543 234567888888899999999999999999987665
Q ss_pred HH--HHHHHHHHhcC
Q psy3014 483 VE--GYRQCSIAVSS 495 (570)
Q Consensus 483 ~~--~l~~~~~~~~~ 495 (570)
+. .|..+...+..
T Consensus 232 REckflk~L~~aieE 246 (288)
T KOG1586|consen 232 RECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHHHHHHhh
Confidence 43 44444444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=73.85 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhccc----------CHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC--
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG----------NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-- 94 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 94 (570)
|+.|.+.++.....+|.+++.+++-|.++..+. -+++|+.-|++|+.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 788999999999999999999999988887663 36778889999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 95 ---------YKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 95 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
|++|..+|+++...+|++...+..|.....
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 788999999999999999988887776643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=86.52 Aligned_cols=114 Identities=29% Similarity=0.510 Sum_probs=107.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
-..+...+..++|+.|+..|.++++++|+.+..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.++...++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 462 QSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 462 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+.+|+..|++...+.|+++.+...+..|-....+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776654
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-06 Score=70.08 Aligned_cols=106 Identities=31% Similarity=0.491 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINR--------NPDDP----------KYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
..++...|+-+++.|+|.+|...|..|+.. .|..+ ..+.+++.|+...|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 557788899999999999999999998742 45543 478899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
..+|.+..+++..|.++...=+..+|...|.++++++|.-..+.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999999865554
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0012 Score=62.28 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 35 SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 35 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
++-++.+|.+..+|+.+-.-+..+ -+++..+.|++.+...|..+.+|.......+...+|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677889999999999998877666 9999999999999999999999999999999999999999999999865432 44
Q ss_pred HHH
Q psy3014 115 MKE 117 (570)
Q Consensus 115 ~~~ 117 (570)
.|.
T Consensus 88 LW~ 90 (656)
T KOG1914|consen 88 LWK 90 (656)
T ss_pred HHH
Confidence 443
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-07 Score=77.97 Aligned_cols=109 Identities=32% Similarity=0.529 Sum_probs=98.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT----NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
-+.++.+...|+-|+..++|..|+..|.+.|+..-. +...|.++|.|.+..|+|..|+..+.+++.++|.+..+++
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 357889999999999999999999999999998544 3567999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
+-|.|++.+.++.+|..+++..+.++.....+.
T Consensus 158 R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999999999988876655443
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0016 Score=62.60 Aligned_cols=409 Identities=9% Similarity=-0.008 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH-HHhhccCHHHHHHHHHHh
Q psy3014 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS-ALSYLGRYKESISTYEEG 105 (570)
Q Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 105 (570)
.+.+...|...|...|.....|...|..-.+.|..+.+.+.|++++.--|-....|..+-. +--.-|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3566677778888888888888888999999999999999999999999887777765433 333567777777788888
Q ss_pred hccCCCcH---HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhc
Q psy3014 106 LKLDPNNE---QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL 182 (570)
Q Consensus 106 l~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (570)
......+- ..|.........+.+.......+.+.+..|- ......+....+.+...+.......
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~-------------~~~~~~f~~f~~~l~~~~~~~l~~~ 207 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL-------------HQLNRHFDRFKQLLNQNEEKILLSI 207 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh-------------hHhHHHHHHHHHHHhcCChhhhcCH
Confidence 87765442 2222222221111111111111111111111 0111122222222222111110000
Q ss_pred cCccHHHHHHHHhcCcccCCCCC-CCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH-HHHHHHHHHHHHHHHc
Q psy3014 183 KDPRMMTTLSVLLGVNMSSTMGD-GDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ-RSAKKEKELGNEAYKK 260 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 260 (570)
...................+. .+........ ... +.. .+.... .........=.++...
T Consensus 208 --d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~--------~~~-----~s~----~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 208 --DELIQLRSDVAERSKITHSQEPLEELEIGVKD--------STD-----PSK----SLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred --HHHHHHhhhHHhhhhcccccChhHHHHHHHhh--------ccC-----ccc----hhhHHHHHHHHHHHHHHHHHHhh
Confidence 000000000000000000000 0000000000 000 000 000000 1111112222334444
Q ss_pred cCHHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 261 KNFEEALAHYNKAVEF-----DP---TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
....+.+-.++..+.. .| .+...|......-...|+++...-.|++++--.... ...|...+......|
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y---~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY---DEFWIKYARWMESSG 345 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh---HHHHHHHHHHHHHcC
Confidence 5556666667766653 22 335677777888889999999999999999877777 788999998888889
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
+.+-|...+..+.+. ..|..+.++..-+...-..|++..|...++......|+..
T Consensus 346 ~~~~~~~~~~~~~~i-------------------------~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v 400 (577)
T KOG1258|consen 346 DVSLANNVLARACKI-------------------------HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLV 400 (577)
T ss_pred chhHHHHHHHhhhhh-------------------------cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchh
Confidence 999998888887774 5677788888888888999999999999999999889988
Q ss_pred HHHHHHHHHHHHhcChHHHHH---HHHHHHhcCCC---CHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDLGLK---DCETCLKLDPK---FLKGWIRKGKIL-QGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~---~~~~al~~~p~---~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.+-........+.|+.+.+.. .+.....-..+ ....+...++.. .-.++.+.|...+.++++..|++...+..
T Consensus 401 ~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~ 480 (577)
T KOG1258|consen 401 EVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLE 480 (577)
T ss_pred hhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHH
Confidence 888888888889999988883 33333322211 133444555544 45688999999999999999999999999
Q ss_pred HHHHHHHhcC
Q psy3014 486 YRQCSIAVSS 495 (570)
Q Consensus 486 l~~~~~~~~~ 495 (570)
+..+....+.
T Consensus 481 ~~~~~~~~~~ 490 (577)
T KOG1258|consen 481 LIRFELIQPS 490 (577)
T ss_pred HHHHHHhCCc
Confidence 9988888875
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=68.21 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRA-DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
.+.+.+..++.-.|.|.-....+.+.++.+| .. +.....+|.+.++.|+.+.|..+|+..-+....
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---------- 244 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---------- 244 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------
Confidence 4567788888899999999999999998874 44 777888999999999999999999866542110
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+..-.....+..+.+.++...+++..|...|.+++..+|.++.+.++.|.|....|+...|++..+.++.
T Consensus 245 ----------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 245 ----------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred ----------hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0022234556778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy3014 441 LDPKF 445 (570)
Q Consensus 441 ~~p~~ 445 (570)
..|..
T Consensus 315 ~~P~~ 319 (366)
T KOG2796|consen 315 QDPRH 319 (366)
T ss_pred cCCcc
Confidence 99974
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0015 Score=60.85 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---------
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD-D--PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF--------- 445 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 445 (570)
+..+..+|......+.++.|...|..+.+.... + ...-.++|.+|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 444555666666666666666666666665332 1 22345567777776654433333332 23332
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHhcCCHHH------HHHHHcCCchHH
Q psy3014 446 -LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE-------AVEGYRQCSIAVSSNPEE------VRKRAMGDPEVQ 511 (570)
Q Consensus 446 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~e~------~~~~~~~~p~~~ 511 (570)
..+++..|...+.++++.||...+.+.++.. +..+ .+..|+.+..-+|+..|. ......+.|++.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 3456778888899999999999999999987 2222 234456666677775542 355666677765
Q ss_pred -HhhcCHHHHHHHHHhhcCHH
Q psy3014 512 -QILRDPAMRLILEQMQNDPR 531 (570)
Q Consensus 512 -~~~~~~~~~~~~~~~~~~~~ 531 (570)
..|....+..+......+|.
T Consensus 523 vqLws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 523 VQLWSSSILTDLYQALGEKGN 543 (629)
T ss_pred HHHHHHHHHHHHHHHhCcchh
Confidence 45566666666666665444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-07 Score=55.17 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888877765
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-05 Score=62.50 Aligned_cols=183 Identities=19% Similarity=0.215 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD-----PTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
+.++.+..-|..|....++..|=..|.++-... .++ ...+...+.|| +..+..+|+.++++++++..+- .
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 667888888999999999999999998887652 122 33444555554 4559999999999999876543 2
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 316 LIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
..+.-+..+|.+|... .++++|+.+|+++-+-+...+ ........+...+..-...++|
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--------------------s~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--------------------SVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 2344556788888765 888888888888876333221 1222234455667777788999
Q ss_pred HHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH
Q psy3014 395 ADAVKEYTEAINRNPDDP-------KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 448 (570)
.+|+..|++.....-+++ ..++.-|.|+....+.-.+...+++..+++|.....
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 999999999987655554 346667888888899999999999999999987654
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-07 Score=79.97 Aligned_cols=105 Identities=30% Similarity=0.440 Sum_probs=98.0
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....+......+...+..|++++|++.|..++.++|.....+..++.+++++++...|+..|..++.++|+....|-.+|
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg 189 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRG 189 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhh
Confidence 34556677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCC
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPN 111 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (570)
.....+|+|.+|...+..+.+++-+
T Consensus 190 ~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 190 YAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999988654
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00022 Score=69.49 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=132.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
|-.++.-|...|+|+-|.+.|.++- ....-...|-+.|+|.+|.+.-+++...... ...|...+.-..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t----~~~yiakaedld 835 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEAT----ISLYIAKAEDLD 835 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhH----HHHHHHhHHhHH
Confidence 3457888889999999999998752 2223345677889999998887776542221 455666667777
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINR- 407 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~- 407 (570)
..|++.+|.+.|-..-.-...-..+...+..+.-+...++ .+|+ ..+.+..+|.-+...|+...|...|-++-..
T Consensus 836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK 912 (1636)
T ss_pred hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence 7777777766653322111111111112222222222221 2222 2445556666666666666666665544221
Q ss_pred -----C-----------------CCCHH--HHHH---------HHHHHHHhcChHHHHHHHH------HHHh-----cCC
Q psy3014 408 -----N-----------------PDDPK--YYSN---------RAACYTKLAAFDLGLKDCE------TCLK-----LDP 443 (570)
Q Consensus 408 -----~-----------------p~~~~--~~~~---------la~~~~~~~~~~~A~~~~~------~al~-----~~p 443 (570)
. ..+.. +.+. ...++.+.|-.+.|+...- -+.. ...
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~ 992 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD 992 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence 0 00110 1110 0122333444444443211 1111 123
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH----HHHHHHHhcCCHHHHHHHHcC
Q psy3014 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG----YRQCSIAVSSNPEEVRKRAMG 506 (570)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~e~~~~~~~~ 506 (570)
..+..+..++..+...|++++|-+.|-.+++++.-|...... .-.-..+.|+.++.+......
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH 1059 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhh
Confidence 456788899999999999999999999999998655433221 122334566666555444433
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00022 Score=59.95 Aligned_cols=178 Identities=13% Similarity=0.060 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--h
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI------TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--K 315 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~ 315 (570)
...+..+..-+..|...++|++|..++.++.+-..++. .++-..+.+...+..+.++..+++++....-.+ +
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 35567777788888888999999999999986654442 233445556666777777777777776442111 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
..+..-...+--.....++++|+..|++++......+ ....-.+.+...+.++.+..+|.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--------------------r~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--------------------RDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHhhhHhhhhHHhh
Confidence 1122222223333445566666666666655222111 01112334445566666666666
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 396 DAVKEYTEAINR------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 396 ~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
+|-..+.+-... .++....+.....+|....+|..|..+++...++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 666555543221 2222233444444555555666666666655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=67.44 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=43.2
Q ss_pred hHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccC
Q psy3014 52 SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 52 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
..-..+..+.+.-++...+|++++|+++.+|..+|.-. ..-..+|...|+++++..
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHH
Confidence 33445677888899999999999999999998887632 334678888888887654
|
The molecular function of this protein is uncertain. |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00051 Score=57.89 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
..+..-+.+|...+++++|...+.++.+-..++ ...+.++-..+.+......+.++..+|+++...+-..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------- 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------- 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------
Confidence 344455677888899999999999998543333 2335666677777778888888888888887632111
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~ 432 (570)
-.|+.+..-...+--.....+.++|+..|++++.+...+ .+.+-..+.++.+...+++|-
T Consensus 105 --------------GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 105 --------------GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred --------------CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 234444444455555677788999999999988764332 345667788899999999998
Q ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHHH
Q psy3014 433 KDCETCLKL------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD----ASNAEAVEGYRQC 489 (570)
Q Consensus 433 ~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~ 489 (570)
..+.+-... .|+....+.....+|....+|..|..+|+...++. |++.....+|-..
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 888764332 34444556666666777789999999999987764 4444444444433
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.4e-06 Score=71.45 Aligned_cols=107 Identities=37% Similarity=0.632 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+.-+..-|+-|++.++|..|+.+|.+.|+..-. +...|.++|.+....|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4556667899999999999999999999987544 356899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
|.|++.+.++.+|..+.+..+.++-+...+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999888776555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.7e-05 Score=68.70 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NGKYADAV 398 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~ 398 (570)
+|..+.....+.+..+.|...|.++.. ..+....+|...|.+-+. .++.+.|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~ 56 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------------------------DKRCTYHVYVAYALMEYYCNKDPKRAR 56 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------CCCS-THHHHHHHHHHHHTCS-HHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------------------------CCCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 455666666666667788888888875 666677889999999777 56666699
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
..|+.+++..|.+..+|......+...|+.+.|...|++++..-|... ..|......-...|+.+......+++.+.
T Consensus 57 ~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 57 KIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877654 57778888888999999999999999999
Q ss_pred CCCcHHHHH
Q psy3014 476 DASNAEAVE 484 (570)
Q Consensus 476 ~p~~~~~~~ 484 (570)
.|++.....
T Consensus 137 ~~~~~~~~~ 145 (280)
T PF05843_consen 137 FPEDNSLEL 145 (280)
T ss_dssp TTTS-HHHH
T ss_pred hhhhhHHHH
Confidence 999665554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.3e-06 Score=51.91 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
.++..+|..+...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888887764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00023 Score=66.66 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=128.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+-....+..++..-++.-.+|++++|+.+.++..+|.- ......+|.++++++++..... +.........|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS-------LGKSQFLQHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh-------hchhhhhhccc
Confidence 44455677888888888999999999888888777642 2334677778888777643322 11111111111
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 410 (570)
..-+. .... .......+...+|.+..+.|+.++|++.++..++..|.
T Consensus 245 ~~~e~------~~~R-------------------------dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~ 293 (539)
T PF04184_consen 245 HFWEA------WHRR-------------------------DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD 293 (539)
T ss_pred chhhh------hhcc-------------------------ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc
Confidence 11110 0000 01112445567899999999999999999999988775
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHh-CCC---------------HHHHHHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRKGKILQG-MQQ---------------QSKAIDAYEKAL 473 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al 473 (570)
+..++.++..++...+.|.++...+.+.-++ -|+.+...+..+.+-.+ .|+ -..|.+.+.+|+
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAv 373 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAV 373 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHH
Confidence 4668999999999999999999999886443 35666666655554332 111 245788999999
Q ss_pred hhCCCcHHHHHHH
Q psy3014 474 ELDASNAEAVEGY 486 (570)
Q Consensus 474 ~~~p~~~~~~~~l 486 (570)
+.+|.-+..+...
T Consensus 374 efNPHVp~YLLe~ 386 (539)
T PF04184_consen 374 EFNPHVPKYLLEM 386 (539)
T ss_pred HhCCCCchhhhcc
Confidence 9999888776443
|
The molecular function of this protein is uncertain. |
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0011 Score=67.25 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
.|.+....+-|++|...|++- .. +..+ +-.....-+..+.|.++.+++ +.+..|-.+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-~~---n~~A---~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DM---NVSA---IQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-cc---cHHH---HHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 345555555666666666552 11 1111 111122345555555555544 34566666777777777777
Q ss_pred HHHHHHHHh
Q psy3014 97 ESISTYEEG 105 (570)
Q Consensus 97 ~A~~~~~~a 105 (570)
+|++.|-++
T Consensus 1122 dAieSyika 1130 (1666)
T KOG0985|consen 1122 DAIESYIKA 1130 (1666)
T ss_pred HHHHHHHhc
Confidence 777666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567777888888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00028 Score=62.27 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE-HRTPEIRTLISEMEKK 363 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~a 363 (570)
..-+.+....|++.+|...+++.++-.|.+ .-++..--.+++..|+...-...+++++.. .+
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtD---lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~-------------- 169 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTD---LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA-------------- 169 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchh---hhhhhhhhhHHHhccchhhhhhHHHHhccccCC--------------
Confidence 334556677888888888888888888887 666666667778888888888888888763 11
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
.-|-...+.-.++..+...|-|++|.+..+++++++|.+..+...++.++...|++.++.+...+.-..-.
T Consensus 170 ---------dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr 240 (491)
T KOG2610|consen 170 ---------DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR 240 (491)
T ss_pred ---------CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh
Confidence 23444666677888889999999999999999999999999999999999999999999998877533211
Q ss_pred CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH--hhCCCcH
Q psy3014 444 KF----LKGWIRKGKILQGMQQQSKAIDAYEKAL--ELDASNA 480 (570)
Q Consensus 444 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 480 (570)
.. ..-|..-+.++..-+.|+.|++.|.+-+ ++..++.
T Consensus 241 ~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 241 QSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 11 1234457888888999999999998765 3444555
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00016 Score=63.74 Aligned_cols=164 Identities=12% Similarity=0.080 Sum_probs=137.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-ccChhHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-RADFKLIAKALQRIGNCY 328 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~~~~l~~~~ 328 (570)
...-+-+....|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++++.. +++-+-...+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344566778899999999999999999999999988889999999999999999999966 777665567777788889
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|-+++|.+.-+++++ +++.+..+...++.++...|++.++.+...+.-..-
T Consensus 186 ~E~g~y~dAEk~A~ralq--------------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQ--------------------------INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred HHhccchhHHHHHHhhcc--------------------------CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 999999999999999999 899999999999999999999999999877653221
Q ss_pred CCC----HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 409 PDD----PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 409 p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
... ..-|..-|.++...+.|+.|++.|++-+
T Consensus 240 r~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 240 RQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111 2235567888889999999999998755
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-06 Score=48.48 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy3014 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.4e-06 Score=46.94 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+++.+|.++..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777778888888888888888888777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-06 Score=48.17 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHH
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 432 (570)
+|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888886
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.012 Score=56.98 Aligned_cols=124 Identities=7% Similarity=-0.064 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRK 452 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l 452 (570)
++.....|......-...|+++...-.|++++-........|...+.-....|+.+-|-..+..+.++ .|+.+..+..-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 44556677777788889999999999999999888888999999999999999999999888888776 57778888888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
+.+....|++..|...++++.+-.|+...+-........+.|+..
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 889999999999999999999888999999888888888888743
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0018 Score=65.28 Aligned_cols=113 Identities=16% Similarity=0.027 Sum_probs=77.6
Q ss_pred HhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHcc-----CCCCcchhhchhHHHhccc-----CHHHHHHHHhchhc
Q psy3014 9 YEVSLLKDKGNAALQA-----NNFIEAIEAYSEAIKL-----DGTNHILFSNRSAAFAKEG-----NYEKALEDAEKTIS 73 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 73 (570)
.++.+...+|.+++.- +|.+.|+.+|+.+... .-..+.+.+.+|.+|.+.. ++..|+.++.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3455666677777654 6788899988888761 1125667888888887743 67778888888777
Q ss_pred cCCCChhHHhHHHHHHhhcc---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 74 LKPDWPKGYSRKGSALSYLG---RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 74 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.. ++.+.+.+|.++..-. ++..|..+|..|... .+..+...++.++..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 64 5677788888887655 467788888777653 345555666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00027 Score=64.34 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
+|..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+ ...|......
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD---PDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
Confidence 456666777777778888888888886666677888888888666 456666888888888888888 7777777778
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|+.+.|...|++++..-+.. .....+|......-...|+.+...+..+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~-----------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKE-----------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCH-----------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCch-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888742211 112346666666667777777777777777777
Q ss_pred CCCCHH
Q psy3014 408 NPDDPK 413 (570)
Q Consensus 408 ~p~~~~ 413 (570)
.|.+..
T Consensus 137 ~~~~~~ 142 (280)
T PF05843_consen 137 FPEDNS 142 (280)
T ss_dssp TTTS-H
T ss_pred hhhhhH
Confidence 776433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0034 Score=60.11 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...+...+.+..+.|+++.|...+.++....+. ..+..+.+.+..+.++...|+..+|
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----------------------~~~~~~~v~~e~akllw~~g~~~~A 203 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPS----------------------SESLLPRVFLEYAKLLWAQGEQEEA 203 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----------------------ccCCCcchHHHHHHHHHHcCCHHHH
Confidence 667777888888888888888887777663211 1122456666777777778887888
Q ss_pred HHHHHHHHhcCCC----------------------------------CHHHHHHHHHHHHHh------cChHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPD----------------------------------DPKYYSNRAACYTKL------AAFDLGLKDCET 437 (570)
Q Consensus 398 ~~~~~~al~~~p~----------------------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~ 437 (570)
+..++..+..... ...++..+|...... +..++++..|.+
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 7777777661110 122444555555555 566667777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHhhCCC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQ-----------------QSKAIDAYEKALELDAS 478 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 478 (570)
++..+|+...+|+.+|..+...=+ ...|+..|-+++...|+
T Consensus 284 a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777777776677666665543211 13366666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.002 Score=64.80 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcc-----cCHHHHHHHHhchhcc-----CCCChhHHhHHHHHHhhcc--
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE-----GNYEKALEDAEKTISL-----KPDWPKGYSRKGSALSYLG-- 93 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 93 (570)
+...|..+|+.+-.. .+..+...+|.||..- .+.+.|+.+++.+... .-.++.+.+.+|.+|..-.
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887655 4567778888887654 6888999999888661 1125667888888888743
Q ss_pred ---CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 94 ---RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 94 ---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
++..|+..|.++..... +.+...++.++..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~--------------------------------------------- 337 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQYLLGVLYET--------------------------------------------- 337 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHc---------------------------------------------
Confidence 56778888888776543 3333333333332
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
T Consensus 338 -------------------------------------------------------------------------------- 337 (552)
T KOG1550|consen 338 -------------------------------------------------------------------------------- 337 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
|. ...++..|..+|..|... .+..+.+.+|.||..- .+...|..+++++.+..+ +.+...++.
T Consensus 338 ---g~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-----~~A~~~~~~ 404 (552)
T KOG1550|consen 338 ---GT---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-----PSAAYLLGA 404 (552)
T ss_pred ---CC---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-----hhhHHHHHH
Confidence 00 124678899999988765 5678888888887743 478899999999988773 344555555
Q ss_pred HHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHH----CCCHHHHHHH
Q psy3014 327 CYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-AEEAKERGNELFK----NGKYADAVKE 400 (570)
Q Consensus 327 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~A~~~ 400 (570)
.+... +.++.+...+.......- ..+.. ............. ..+...+...
T Consensus 405 ~~~~g~~~~~~~~~~~~~~a~~g~-----------------------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 405 FYEYGVGRYDTALALYLYLAELGY-----------------------EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHccccccHHHHHHHHHHHhhh-----------------------hHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 44433 666666555544433111 00111 1111111111111 1244555555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh----cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-C--CCHHHHHHHHHHHH
Q psy3014 401 YTEAINRNPDDPKYYSNRAACYTKL----AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG-M--QQQSKAIDAYEKAL 473 (570)
Q Consensus 401 ~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~--g~~~~A~~~~~~al 473 (570)
+.++. .+.++.+...+|.+|..- .+++.|...|.++.... ....+++|.++.. . .....|..+|.++.
T Consensus 462 ~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 462 YSRAA--AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHH--hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 65554 345778888888888765 35899999999988776 8889999999865 1 22789999999998
Q ss_pred hhCCCc
Q psy3014 474 ELDASN 479 (570)
Q Consensus 474 ~~~p~~ 479 (570)
+.+...
T Consensus 537 ~~~~~~ 542 (552)
T KOG1550|consen 537 EEDSRA 542 (552)
T ss_pred hcCchh
Confidence 877653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0037 Score=61.38 Aligned_cols=113 Identities=15% Similarity=0.013 Sum_probs=80.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
...+.......|+.+-..+..|.++...|+.++|+..|++++.....- .-.++.+|+++..+++|++|..++.+..
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 333333344778888888888888888888888888888887533322 3367788888888888888888888888
Q ss_pred hcCCCC-HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHhhC
Q psy3014 440 KLDPKF-LKGWIRKGKILQGMQQQ-------SKAIDAYEKALELD 476 (570)
Q Consensus 440 ~~~p~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~ 476 (570)
+.+.-. ....+..|.|+...|+. ++|.+.|.++-.+.
T Consensus 333 ~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 333 KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 765432 23345577888888888 77777777765443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0022 Score=62.90 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH------hhc----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHH
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQK------IEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~------l~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
+-.-|.++.+..++++|+++|++. +++ .|.. ....-..-|.-+...|+++.|+..|-.+-......+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~e--vv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEE--VVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHH--HhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 334455555566666666666542 211 1221 1222334466677788888888877666544333444
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 433 (570)
......+.+|+...+..... ......|-..+.-|...|+|+-|.+.|.++-. ....-..|-+.|+|+.|.+
T Consensus 742 ai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHH
Confidence 44555666666665543221 12233455678888888999999888877522 2223345667788888877
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 434 DCETCLKLDPKF-LKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 434 ~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.-+++.. |.. ...|...+.-+...|+|.+|...
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 7766543 332 23344445444555554444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0021 Score=59.49 Aligned_cols=172 Identities=15% Similarity=-0.005 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc----ccChhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcccCCHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKK---MEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
++....+-.+|....+|+.-++..+..-.. -++. ..+....|.++.+ .|+.++|+..+..++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~---~~i~~~yafALnRrn~~gdre~Al~il~~~l~~------ 211 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ---HNIKFQYAFALNRRNKPGDREKALQILLPVLES------ 211 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc---hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc------
Confidence 455566666788888888888777776544 2233 5566677777777 78888888888775442
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK---------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
..+.+++++..+|.+|-. ....++|+.+|.++.+.+|+. ..-.|++.++..
T Consensus 212 -------------------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 212 -------------------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML 271 (374)
T ss_pred -------------------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH
Confidence 444556666666666532 224789999999999999643 344566667776
Q ss_pred hcChHHHHHHHHHHH-h-------c----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 425 LAAFDLGLKDCETCL-K-------L----DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 425 ~~~~~~A~~~~~~al-~-------~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.|...+.....++.. . . .-.+.+.+-.++.+..-.|++++|..++++++.+.|..-.
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 776443332222221 1 1 2234555667888889999999999999999999876543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=46.09 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
+..|+.+|.+++..|++++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456777777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.016 Score=53.86 Aligned_cols=205 Identities=12% Similarity=0.010 Sum_probs=116.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
.+++++...|-.+++|+.........++-+.|+....+++...|. ....++.+|...++-+.-..+|+++++.-
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps------L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS------LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc------hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 467778888888899988888888888888898888888777765 35566777777777666666676665410
Q ss_pred C----------------C----HH------------------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HH
Q psy3014 349 R----------------T----PE------------------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LF 389 (570)
Q Consensus 349 ~----------------~----~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~ 389 (570)
. + .+ ...+..-++.|...|-++-...-...+++..-|.+ +.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 0 0 00 11111223444444444433322223333333322 34
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF--LKGWIRKGKILQGMQQQSKAID 467 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 467 (570)
..|++.-|...|+-.+...|+++..-...-..+...++-+.|...|++++..-... ...|-.+-..-..-|+...+..
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 45666666666666666666665555555555556666666666666555432221 2233333334444555555555
Q ss_pred HHHHHHhhCCCc
Q psy3014 468 AYEKALELDASN 479 (570)
Q Consensus 468 ~~~~al~~~p~~ 479 (570)
.=++..++.|..
T Consensus 524 Le~rf~e~~pQe 535 (660)
T COG5107 524 LEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHcCcH
Confidence 555555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0017 Score=53.00 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=61.7
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
...++....++.......+-..++..+...|++++|+..++.++....+. .-.+-+-
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-----------------------~lk~l~~ 129 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE-----------------------NLKALAA 129 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH-----------------------HHHHHHH
Confidence 33344444444443334445556666666666666666666666422110 0112334
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
..++.+...+|.+++|+..+...-... -.+......|.++...|+-++|...|++++...++
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 456666666666666666555432110 11233445566666666666666666666666543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=45.41 Aligned_cols=34 Identities=35% Similarity=0.420 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN 44 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 44 (570)
++.++.+|.+++..|+|++|+..|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4567788888888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0029 Score=58.67 Aligned_cols=172 Identities=12% Similarity=0.148 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHh-hcccChhHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEF----DPTDITFQNNIAAVYFE---RKEYDQCIEQYIQKI-ENRADFKLI 317 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l-~~~~~~~~~ 317 (570)
.+++..++=..|....+|+.-+++.+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..++ ...+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 4566677777899999999999999988776 55677888899999999 999999999999955 445555
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 318 AKALQRIGNCYKKM---------EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 318 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
++++..+|.+|... ...++|+..|.++.. .+|+ ...-.+++.++
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--------------------------~~~~-~Y~GIN~AtLL 269 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--------------------------IEPD-YYSGINAATLL 269 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--------------------------CCcc-ccchHHHHHHH
Confidence 88999999988753 123445555555544 6643 23334455555
Q ss_pred HHCCCHHHHHHHHHHHH--------hc----CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 389 FKNGKYADAVKEYTEAI--------NR----NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al--------~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
...|.-.+.....++.. +. .-.+.+.+-.++.+..-.|++++|+..+++++.+.|....
T Consensus 270 ~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 270 MLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 55554322222222211 11 2235566677888889999999999999999999876543
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0047 Score=62.95 Aligned_cols=77 Identities=19% Similarity=0.165 Sum_probs=65.6
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTY 102 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 102 (570)
.-++.+.|.++-+++ +.+.+|..+|.+.++.|...+|++.|-++ +++..|.....+..+.|.|++-+.++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 457788888887776 56889999999999999999999999765 56778888899999999999999999
Q ss_pred HHhhccC
Q psy3014 103 EEGLKLD 109 (570)
Q Consensus 103 ~~al~~~ 109 (570)
.-+-+..
T Consensus 1157 ~MaRkk~ 1163 (1666)
T KOG0985|consen 1157 LMARKKV 1163 (1666)
T ss_pred HHHHHhh
Confidence 8877643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.043 Score=56.44 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH------HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE------IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
++..-|......+..++|.+++.++++.-.... ....+......... ..--.....+..+.+.+-.++
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~------~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW------LRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH------HHHHHHHHHHHHHHHHHHCcC
Confidence 344446666777777788888888876321110 00000000000000 000123345667888889999
Q ss_pred HHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHhcChHHHHHHHH--------HHHhcCCCC---HHHHHHHH
Q psy3014 394 YADAVKEYTEAINRN---PD------DPKYYSNRAACYTKLAAFDLGLKDCE--------TCLKLDPKF---LKGWIRKG 453 (570)
Q Consensus 394 ~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~p~~---~~~~~~l~ 453 (570)
+..|......+.... |. .+..++..|..+...|+.+.|...|. .+....+.. .-+..++.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 999999988777552 22 36788999999999999999999998 333334433 23345567
Q ss_pred HHHHhCCCHH
Q psy3014 454 KILQGMQQQS 463 (570)
Q Consensus 454 ~~~~~~g~~~ 463 (570)
.++...+...
T Consensus 457 ~I~~~~~~~~ 466 (608)
T PF10345_consen 457 IILQYESSRD 466 (608)
T ss_pred HHhHhhcccc
Confidence 7776655533
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.047 Score=56.22 Aligned_cols=236 Identities=16% Similarity=0.076 Sum_probs=134.3
Q ss_pred ccCHHHHHHHHHHHHhcC--CCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHhhcc------cC-hhHHHHHHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFD--PTDITFQ----NNIAAVYFERKEYDQCIEQYIQKIENR------AD-FKLIAKALQRIGN 326 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~--p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~------~~-~~~~~~~~~~l~~ 326 (570)
.+++..|++.++...... +.++.+. ...+.++...+..+++++..+++.... |+ ......++..+-.
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 379999999999988765 3554433 344566777788888888888875321 11 1111344444433
Q ss_pred --HHHHcCCHHHHHHHHHHHhc---ccCCH--------H--HHHHHHHHHHHHHHHHHHhc-CChhh--HHHHHHHHHHH
Q psy3014 327 --CYKKMEDWKNAKVYFEKSMS---EHRTP--------E--IRTLISEMEKKIKEEEKKAY-IDPVK--AEEAKERGNEL 388 (570)
Q Consensus 327 --~~~~~~~~~~A~~~~~~~~~---~~~~~--------~--~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~~~ 388 (570)
++...|+++.+...++..-. ..... + +....+.-..+-....-... .+..+ .-++..-|...
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~ 311 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN 311 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence 44567776666665544332 11110 0 00000000000000000000 00111 22344456667
Q ss_pred HHCCCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 389 FKNGKYADAVKEYTEAINRN-------PDD-------------------PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...+..++|.+++.++++.- +.. ....+..+.+..-.+++..|....+.+....
T Consensus 312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLC 391 (608)
T ss_pred hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 77787778888888887541 110 1145566888888999999999888776542
Q ss_pred ---CC------CHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHhhCCCcHHH---HHHHHHHHHHhcC
Q psy3014 443 ---PK------FLKGWIRKGKILQGMQQQSKAIDAYE--------KALELDASNAEA---VEGYRQCSIAVSS 495 (570)
Q Consensus 443 ---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~---~~~l~~~~~~~~~ 495 (570)
|. .+..++..|..+...|+.+.|...|. .+....+.+.-. ..++..++...+.
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 22 36778889999999999999999998 555555554332 2345555555554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0021 Score=52.55 Aligned_cols=98 Identities=24% Similarity=0.197 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-LKGWIRKGKI 455 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 455 (570)
....++..+...|++++|+..++.++....+. +.+-..+|.+...+|.+++|+..++.... ++. +..-...|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence 44567888999999999999999998654432 44677899999999999999998876533 221 2234568999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 456 LQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+...|+.++|+..|+++++.+++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999998553
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0043 Score=53.29 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=152.5
Q ss_pred HccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHhhccc-----ChhHHHHHHHHHHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDI----TFQNNIAAVYFERKEYDQCIEQYIQKIENRA-----DFKLIAKALQRIGNCYK 329 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~~~~~l~~~~~ 329 (570)
...++++|+..|++++++.|... .++..+..+++++++|++-...|.+.+..-. ++. ......+-..-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS--EKsIN~IlDyiS 116 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS--EKSINSILDYIS 116 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHh
Confidence 35689999999999999988764 4566777889999999999999988774311 110 111112211112
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH----HHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE----EAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
...+.+.-..+|+..+. .+ .+..+.. ....+|.+++..|+|.+-.+.+.+.-
T Consensus 117 tS~~m~LLQ~FYeTTL~-------------------AL-----kdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLD-------------------AL-----KDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhhHHHHHHHHHHHH-------------------HH-----HhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 22333333333333322 11 1111222 23468999999999888777777665
Q ss_pred hcCCC------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHhCCCHHHHHH
Q psy3014 406 NRNPD------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI------RKGKILQGMQQQSKAID 467 (570)
Q Consensus 406 ~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~l~~~~~~~g~~~~A~~ 467 (570)
+.... -.++|..--..|..+++-.+-...|++++.+...-|..+. -=|..+.+.|+|++|-.
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 44221 1235555566788888888888899999987654333222 12456788999999999
Q ss_pred HHHHHHhhC-----CCcHHHHH--HHHHHHHHhcC--CHHHHHHHHcCCchHHHhh------cCHHHHHHHHHhhcCHHH
Q psy3014 468 AYEKALELD-----ASNAEAVE--GYRQCSIAVSS--NPEEVRKRAMGDPEVQQIL------RDPAMRLILEQMQNDPRA 532 (570)
Q Consensus 468 ~~~~al~~~-----p~~~~~~~--~l~~~~~~~~~--~~e~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~ 532 (570)
.|=.|++.. |.....+. -|+.++.+.|- .+.+...-...||++..+- .+..+...-..++ ..
T Consensus 253 DFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~---~~ 329 (440)
T KOG1464|consen 253 DFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILK---SN 329 (440)
T ss_pred HHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHH---hh
Confidence 988888753 44444443 34555555443 2222222334455554331 2222111111111 12
Q ss_pred HHHhhcCHHHHHHHHHHHh
Q psy3014 533 LSDHLKNPEIASKIQKLVN 551 (570)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~ 551 (570)
-..++.||-+|+..+.++.
T Consensus 330 ~~~IM~DpFIReh~EdLl~ 348 (440)
T KOG1464|consen 330 RSNIMDDPFIREHIEDLLR 348 (440)
T ss_pred hccccccHHHHHHHHHHHH
Confidence 2246778999998887754
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=56.22 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=102.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-C--C---
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-D--P--- 443 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p--- 443 (570)
.......|...+.+..+.|.++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 556778899999999999999999999999987652 25778888999999999999999999888871 0 0
Q ss_pred ----------------------C------CHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 444 ----------------------K------FLKGWIRKGKILQGM------QQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 444 ----------------------~------~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
. ...++..+|...... +..+++...|.++.+++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 134566677777777 889999999999999999999999999999
Q ss_pred HHHhcCC
Q psy3014 490 SIAVSSN 496 (570)
Q Consensus 490 ~~~~~~~ 496 (570)
+..+-..
T Consensus 302 ~~~~~~~ 308 (352)
T PF02259_consen 302 NDKLLES 308 (352)
T ss_pred HHHHHHh
Confidence 8887653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.003 Score=55.37 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+. ....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~----~~~~------- 205 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK----AAHG------- 205 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh----HHHH-------
Confidence 34455566777888888888888888888888888888888888888888777765543222221 0000
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
....++.+.++-...+.. .+++....+|++..+-+.++..+...|+.+.|.+.+-..++.+.
T Consensus 206 ----l~a~i~ll~qaa~~~~~~--------------~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 206 ----LQAQIELLEQAAATPEIQ--------------DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred ----HHHHHHHHHHHhcCCCHH--------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 011123333332222111 11112225677777777777777777777777777766666543
Q ss_pred C--CHHHHHHHHHHHHHhc
Q psy3014 410 D--DPKYYSNRAACYTKLA 426 (570)
Q Consensus 410 ~--~~~~~~~la~~~~~~~ 426 (570)
. +..+.-.+-.++...|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 268 GFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cccCcHHHHHHHHHHHhcC
Confidence 2 3334444444444444
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0093 Score=51.15 Aligned_cols=195 Identities=10% Similarity=0.057 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYD-QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
+..+-++++.+.++.+|+|..+|..+-.+....|++. .-++..+.++..+..+ ..+|...-.+....+.++.-+.+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN---YHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN---YHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc---hhhhHHHHHHHHHHhhHHHHHHH
Confidence 4667788899999999999999998888888888888 7888888888888777 88888888888888889888888
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CC-----CHHHHHHHHHHHHhcCCCCHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NG-----KYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~~ 414 (570)
....++ .+-.+-.+|...-.+... .| ..+.-+.+..+.+...|++..+
T Consensus 170 ~~~Lle--------------------------~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSa 223 (318)
T KOG0530|consen 170 ADELLE--------------------------EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESA 223 (318)
T ss_pred HHHHHH--------------------------HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence 888887 333333333322111111 11 1233455666777778888888
Q ss_pred HHHHHHHHHH-hc--ChHHHHHHHHHHH-hcCCCCHHHHHHHHHHH------HhCCCHH---HHHHHHHHHH-hhCCCcH
Q psy3014 415 YSNRAACYTK-LA--AFDLGLKDCETCL-KLDPKFLKGWIRKGKIL------QGMQQQS---KAIDAYEKAL-ELDASNA 480 (570)
Q Consensus 415 ~~~la~~~~~-~~--~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~------~~~g~~~---~A~~~~~~al-~~~p~~~ 480 (570)
|..|.-++.. .| .+.+-.......+ ......+..+-.+..+| .+.+.-+ +|.+.|+..- +.||-..
T Consensus 224 WnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~ 303 (318)
T KOG0530|consen 224 WNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRK 303 (318)
T ss_pred HHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHH
Confidence 8777777664 33 1333344444333 22333444444444444 1122222 3555555443 5666555
Q ss_pred HHHHH
Q psy3014 481 EAVEG 485 (570)
Q Consensus 481 ~~~~~ 485 (570)
..|..
T Consensus 304 nyW~~ 308 (318)
T KOG0530|consen 304 NYWRH 308 (318)
T ss_pred HHHHH
Confidence 55543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00038 Score=56.68 Aligned_cols=98 Identities=28% Similarity=0.320 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------------------cchhhchhHHHhcccCHHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----------------------HILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~ 67 (570)
..+.+...|......|+.+.++..+++++.+.... ..+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34556667888888999999999999999985332 12334566778889999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
+++++..+|.+..++..+..+|...|+..+|+..|++...
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.1e-05 Score=43.24 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
.+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467778888888888888888888888887753
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0071 Score=59.48 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=99.9
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH-HHHHHHHHHHHHHHcCCHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL-IAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
....+.|.+.+....+..|+..-..+..|.++...|+.++|++.+++++......+. ..-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 467889999999999999999999999999999999999999999998854433322 2457789999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHhc
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKY-------ADAVKEYTEAINR 407 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~~ 407 (570)
.++.+..+ .+.- .....+..|.++...|+. ++|...|.++-..
T Consensus 326 ~~f~~L~~--------------------------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLK--------------------------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHh--------------------------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999988 3333 344556678888888988 7777777777544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=52.84 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDD----------------------PKYYSNRAACYTKLAAFDLGLKDCETCL 439 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al 439 (570)
...|......++...++..+.+++.+.... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 334556667788888888888888763221 1245567778888999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
..+|.+..++..+-.+|...|+..+|+..|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.15 Score=57.64 Aligned_cols=152 Identities=15% Similarity=0.124 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHh---hcccC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc
Q psy3014 297 YDQCIEQYIQKI---ENRAD-FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372 (570)
Q Consensus 297 ~~~A~~~~~~~l---~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 372 (570)
..+-+-.+++++ ..+|+ .....++|...|.+....|+++.|...+-++.+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-------------------------- 1698 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-------------------------- 1698 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------------------------
Confidence 455555555554 22332 235689999999999999999999999888876
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHhcCh--HHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD-----------------PKYYSNRAACYTKLAAF--DLGLK 433 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~~~~--~~A~~ 433 (570)
.. -+.++...|..++..|+-..|+..+++.++.+-.+ ..+...++.-....|++ ..-++
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk 1776 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILK 1776 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 22 56788899999999999999999999999653211 11333444444455553 34577
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHH------------hCCCHHH---HHHHHHHHHhhC
Q psy3014 434 DCETCLKLDPKFLKGWIRKGKILQ------------GMQQQSK---AIDAYEKALELD 476 (570)
Q Consensus 434 ~~~~al~~~p~~~~~~~~l~~~~~------------~~g~~~~---A~~~~~~al~~~ 476 (570)
.|..+.+..|.....++.+|..|. +.|++.. |+-.|.+++...
T Consensus 1777 ~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1777 YYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 889999999988777777775443 2455555 555556666554
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.12 Score=58.46 Aligned_cols=118 Identities=13% Similarity=-0.002 Sum_probs=93.1
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CC--------
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-PK-------- 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 444 (570)
+....+.|...|.+....|+++.|...+-.|.+.. -+.++...|..+...|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45568899999999999999999999999998776 57889999999999999999999999999653 22
Q ss_pred --C------HHHHHHHHHHHHhCCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 445 --F------LKGWIRKGKILQGMQQQ--SKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 445 --~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
. ..+.+.++......|++ ..-+.+|..+.+..|....-++.+|.-+.++
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 1 22344455555566664 4567899999999998888777777554444
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.023 Score=48.82 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
+.+...-..|+...+.++.++|.+..+|..+-.++..++ +..+-++.+..+++.+|.+ ..+|...-.+....|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN---YQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN---YQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHhcCcc
Confidence 344455566666666677777766666655555544433 4455556666666666666 555655555555555554
Q ss_pred -HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 336 -NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 336 -~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 414 (570)
.-++..+.++. .+..+..+|...-.+...-+.|+.-+.+..+.++.+-.+-.+
T Consensus 130 ~rELef~~~~l~--------------------------~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 130 FRELEFTKLMLD--------------------------DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred cchHHHHHHHHh--------------------------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 44455555554 445555555555555555555666555555555554444444
Q ss_pred HHHHHHHHHH-hc-----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 415 YSNRAACYTK-LA-----AFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 415 ~~~la~~~~~-~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
|..+=.+... .| ..+.-+.+..+.+...|++..+|..+.-++.
T Consensus 184 WN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 184 WNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred hheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 4332111111 01 1122333444445555555555555444444
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.037 Score=52.16 Aligned_cols=102 Identities=13% Similarity=-0.035 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCC-----CCHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD-DPK-YYSNRAACYTKLAAFDLGLKDCETCLKLDP-----KFLKGWI 450 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 450 (570)
..+.+.....+.++|-+..|.++.+-.+.++|. +|- +.+.+-....+.++|+=-+..++....... .-|..-+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 445566677888899999999999999999998 665 344444555667777766777666544211 1234566
Q ss_pred HHHHHHHhCCCH---------------HHHHHHHHHHHhhCCCc
Q psy3014 451 RKGKILQGMQQQ---------------SKAIDAYEKALELDASN 479 (570)
Q Consensus 451 ~l~~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 479 (570)
..+.+++..++. +.|...+.+|+...|.-
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 777888888887 89999999999988863
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.16 Score=51.85 Aligned_cols=204 Identities=15% Similarity=0.001 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIA 318 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~ 318 (570)
++..-..|.+....|++++|++..+.++..-|.+ ..+...+|.+..-.|++++|..+...+.+....+ ....
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3344456888889999999999999999987765 4567788999999999999999999888663322 2224
Q ss_pred HHHHHHHHHHHHcCCHHHH--HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNA--KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
.+....+.++..+|+...| ...+...-. +-....|.........+.++...-+++.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~----------------------q~l~q~~~~~f~~~~r~~ll~~~~r~~~ 595 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIRE----------------------QHLEQKPRHEFLVRIRAQLLRAWLRLDL 595 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------------------HHhhhcccchhHHHHHHHHHHHHHHHhh
Confidence 4555667788888833222 222222211 0001222222223333333333333555
Q ss_pred HHHHHHHHHhc----CCCC--HH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHHhCCCH
Q psy3014 397 AVKEYTEAINR----NPDD--PK-YYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-LKG------WIRKGKILQGMQQQ 462 (570)
Q Consensus 397 A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~------~~~l~~~~~~~g~~ 462 (570)
+.......++. .|.. .. .++.++.++...|++++|...+.....+-.+. +.. +.-.......+|+.
T Consensus 596 ~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~ 675 (894)
T COG2909 596 AEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDK 675 (894)
T ss_pred hhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCH
Confidence 55555554443 3322 21 33578999999999999999888876653222 111 11122334567899
Q ss_pred HHHHHHHHHH
Q psy3014 463 SKAIDAYEKA 472 (570)
Q Consensus 463 ~~A~~~~~~a 472 (570)
.+|.....+.
T Consensus 676 ~~a~~~l~~s 685 (894)
T COG2909 676 ELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHhc
Confidence 9988888773
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.019 Score=50.59 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
...-+.-+.-....|++.+|...+..++...|++ ..+...++.+|...|+.+.|...+...-.......
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-------- 202 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-------- 202 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH--------
Confidence 3444555666788899999999999999999998 88999999999999999999888877544221111
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..........+.+.....+. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+.
T Consensus 203 -----------------~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 203 -----------------AHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred -----------------HHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000111112222221111 234455667888888888888888888888888887777776
Q ss_pred cCC
Q psy3014 441 LDP 443 (570)
Q Consensus 441 ~~p 443 (570)
.+.
T Consensus 265 ~d~ 267 (304)
T COG3118 265 RDR 267 (304)
T ss_pred hcc
Confidence 644
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00021 Score=40.92 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
+.++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56777777777777777777777777777764
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.088 Score=48.08 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CCC---C-------HHHHHHHHHHHHHhcCHH---HHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKK-NFEEALAHYNKAVEF----DPT---D-------ITFQNNIAAVYFERKEYD---QCIEQYIQK 307 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~ 307 (570)
-+..+++.|......+ +++.|...++++.++ .+. . ..++..++.+|...+.++ +|...++.+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3556677899999999 999999999999887 211 1 346677888888877765 455555555
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
-...|+. +..+...-.+..+.++.+.+.+.+.+++..
T Consensus 114 ~~e~~~~---~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 114 ESEYGNK---PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhCCCC---cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 5666776 555544455555588889999999888874
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.098 Score=48.44 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=134.6
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH---
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK--- 330 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~--- 330 (570)
...+++..|...+..+-.. .++.....++.+|... .+..+|...|..+.. ... +.+.+.+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--ccc---HHHHHhHHHHHhcCCC
Confidence 3578889999999988763 3346777888887654 468889999985543 333 6788889999887
Q ss_pred -cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-------CHHHHHHHHH
Q psy3014 331 -MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-------KYADAVKEYT 402 (570)
Q Consensus 331 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~A~~~~~ 402 (570)
..+..+|..+|.++...... .-....+.+|..+..-. +...|...|.
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~-------------------------~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNV-------------------------EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred cccCHHHHHHHHHHHHHcCCh-------------------------hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 45899999999999874221 11233566666665531 2347888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---------------CHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ---------------QQS 463 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---------------~~~ 463 (570)
++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...| +..
T Consensus 180 ~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~ 254 (292)
T COG0790 180 KAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKK 254 (292)
T ss_pred HHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHH
Confidence 887765 78888999988865 3478999999999998876 78888888 666655 777
Q ss_pred HHHHHHHHHHhhCCCcH
Q psy3014 464 KAIDAYEKALELDASNA 480 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~ 480 (570)
.|..++.++....+...
T Consensus 255 ~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 255 QALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHHHcCChhH
Confidence 77777777776655433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=41.80 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
+.++.+|..+.++|+|.+|..+.+.+++++|+|..+......+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888876666554443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.15 Score=48.47 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC-HHHHHHHHHHhhc
Q psy3014 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLK 107 (570)
Q Consensus 29 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 107 (570)
.-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678899988888999998888777777779999999999999999999999999988888777 8899999999999
Q ss_pred cCCCcHHHHHHHHHH
Q psy3014 108 LDPNNEQMKEAIKDV 122 (570)
Q Consensus 108 ~~p~~~~~~~~l~~~ 122 (570)
.+|+++..|...-++
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999887655444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.17 Score=47.54 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHH-Hhc---CHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI------AAVYF-ERK---EYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------a~~~~-~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
....+.++...|..++.-...++|+.....-.+ -.+.. .-. +...=+..++.+-..+-+......-+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344577888888888888888888865221111 11111 001 11222334444444455555556666777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHhcccCCHH-----HHHHH-HHHHHHHHH--HHHH---------hcCCh---hhHHHHHH
Q psy3014 325 GNCYKKMED-WKNAKVYFEKSMSEHRTPE-----IRTLI-SEMEKKIKE--EEKK---------AYIDP---VKAEEAKE 383 (570)
Q Consensus 325 ~~~~~~~~~-~~~A~~~~~~~~~~~~~~~-----~~~~~-~~~~~a~~~--~~~~---------~~~~~---~~~~~~~~ 383 (570)
+.-+.+.|. -++|+..++.++.-.+..- +.... ..+.+|+.. +.+. ..+.| .+.+.-..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 777788877 7888888888887554421 11111 111111110 0000 00111 12233333
Q ss_pred H--HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 384 R--GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 384 ~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
+ |..++.+|+|.++..+-.-..++.| ++.++..+|.|.....+|++|..++..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3 3345667777777776666666777 677777777777777777777776655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.23 Score=49.13 Aligned_cols=143 Identities=8% Similarity=0.104 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
....++.++|..+.....+++|.++|...-. .-+...+++....|++-..+ ...-|++ ...+-.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~---s~llp~~ 858 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL----ARTLPED---SELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcc---cchHHHH
Confidence 4567888999999999999999999987522 23566778877777654433 3334555 5667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|..+...|.-++|.+.|-+.-.-.........++++.+|.+..++- .-|.........+.-+...++.-+|++..+++
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 8888888888888888766543222234455667777777765543 22333333333444555666667777766665
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00073 Score=63.44 Aligned_cols=111 Identities=30% Similarity=0.308 Sum_probs=101.3
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcc---cCHHHHHHHHhchhccCCCChh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE---GNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~ 80 (570)
..++++.++.++..|+-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+..+..+++++|....
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 3567889999999999999999999999999999999999999999999998875 5778899999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
+|+.++.++..++++.+|+.+...+....|.+..
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999999999888888886543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.043 Score=51.20 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++..+...|...-......-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778899999999999999999998899999999999999999999999984433333333333334456778888888
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
+++..-...... ....-............++..+.......|..+.|+..++-.++.+=
T Consensus 127 ~~l~~L~~~~~~--------~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSG--------RMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhcc--------ccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 887621110000 00000000001112234555666677788888888888888888753
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.14 Score=50.48 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=129.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
+.+-.--|+|++|.+.|-.+=.. + .-..++...|+|-...+.++..-. +.++.....++..+|..+..+..
T Consensus 741 aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 44444568899999988764221 1 122456677888777776654322 33445567899999999999999
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
|++|.++|...-......+.+..+..+++ ++.....-|++...+-.+|..+...|--++|++.|-+.- .| .
T Consensus 812 We~A~~yY~~~~~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---k 882 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDTENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---K 882 (1189)
T ss_pred HHHHHHHHHhccchHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---H
Confidence 99999999988776666666666555543 333344567778888889999999999999998876541 22 2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+ ....+..+++|.+|.+..++-- -|.-.......+.-+...++..+|++.++++
T Consensus 883 a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1223456677778877665521 2333333344455556677777777777776
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00086 Score=38.83 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
++..+|.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00062 Score=38.61 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00072 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN 44 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 44 (570)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777777777777777777777777777753
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0029 Score=46.67 Aligned_cols=93 Identities=22% Similarity=0.327 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccC-----------HHHHHHHHhchhccCCCChhHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGN-----------YEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 82 (570)
+|..++..||+-+|+++.+..+...+++. ..+..-|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57789999999999999999999988876 455666777765432 4568999999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
+.+|.-+-....|+++....++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988777778888888888888753
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=56.53 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
..+.-..+.|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+..++.+.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344445566777777777777777777777777777777666666777777777777777777766666554
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00099 Score=63.42 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=95.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 18 GNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 18 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
|.-+...|+...|+.++..|+-..|.. .....++|.+.++.|-.-.|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 444556899999999999999999874 4567899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.|++.|+.+++.+|+++.....+..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999988776655543
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=56.78 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
+..-...|.-....|+.++|...|+.|+.++|.++.++...|......++.-+|-.+|-+|+.++|.+.+++.++++
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33334445555567777777777777777777777777777777777777777777777777777777777666554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0069 Score=54.01 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+..-..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 45566677777888888888888888888888877777888888888888888888888888887776654333
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.039 Score=51.44 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 268 AHYNKAVEFDPTDITFQNNIAAVYFERKE------------YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
.-|++.+..+|.+..+|..+....-..-. .+.-+.++++|++.+|++ ...+..+-.+..+....+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~---~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS---ERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHH
Confidence 45788899999999999988876554422 456778888999888888 666666666666777777
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCC--
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK---NGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~-- 410 (570)
+....+++++. .+|.++..|...-..... .-.++.....|.+++..-..
T Consensus 83 ~l~~~we~~l~--------------------------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 83 KLAKKWEELLF--------------------------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred HHHHHHHHHHH--------------------------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 77777888777 677777777665444332 33567777777777653110
Q ss_pred ----------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 411 ----------------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 411 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...++..++....+.|..+.|+..++..++++
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 02245556666677777888888887777764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.22 Score=45.47 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHccCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 246 SAKKEKELGNEAYKKKNFE---EALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
...++..++.++...+.++ +|....+.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3455566777777766654 566666677777888888886666666668999999999999986543
|
It is also involved in sporulation []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.16 Score=47.03 Aligned_cols=167 Identities=17% Similarity=0.084 Sum_probs=125.4
Q ss_pred HHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Q psy3014 291 YFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM----EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366 (570)
Q Consensus 291 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 366 (570)
....+.+..+...+..+-... . ......++.+|... .+..+|..+|..+.
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~--~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--------------------- 104 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG--D---AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--------------------- 104 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC--C---hHHHHHHHHHHHhccCccccHHHHHHHHHHHh---------------------
Confidence 345677888888888876522 1 35677777777653 46778888888554
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc-------ChHHHHHH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDD-PKYYSNRAACYTKLA-------AFDLGLKD 434 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~ 434 (570)
....+...+.+|.++.. ..+..+|..+|.++.+..... ..+.+.+|.+|..-+ +...|...
T Consensus 105 -------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~ 177 (292)
T COG0790 105 -------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYL 177 (292)
T ss_pred -------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHH
Confidence 34567778889999887 459999999999999875433 344788888887642 23479999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 435 CETCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ..+...++ ++..-|.
T Consensus 178 ~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 178 YRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 99988766 77889999988855 3489999999999999876 88888888 6666664
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.48 Score=48.65 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT--D-------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
..+......+.......++.+|..++.++...-|. . ....-..|.+....|+.++|++..+.++..-|...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34556667788888999999999999988765433 1 24445678888999999999999999998766553
Q ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 316 --LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 316 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
....++..+|.+..-.|++++|..+...+.+.....+ ...-...+....+.++..+|+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--------------------~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--------------------VYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--------------------cHHHHHHHHHHHHHHHHHhhH
Confidence 2356677889999999999999999988876322111 122234445566788888883
Q ss_pred --HHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc----CCCCHH---HHHHHHHHHHhCC
Q psy3014 394 --YADAVKEYTEAI----NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL----DPKFLK---GWIRKGKILQGMQ 460 (570)
Q Consensus 394 --~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~~g 460 (570)
+.+....|...- ...|-+.-.....+.++...-+++.+.......++. .|.... .++.++.+.+..|
T Consensus 553 ~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 553 VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 333333333222 223433334444444444444467666666666554 233222 2347999999999
Q ss_pred CHHHHHHHHHHHHhhC
Q psy3014 461 QQSKAIDAYEKALELD 476 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~ 476 (570)
+.++|...+.....+-
T Consensus 633 dl~~A~~~l~~~~~l~ 648 (894)
T COG2909 633 DLDKALAQLDELERLL 648 (894)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998887654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.13 Score=41.40 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=89.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH-HHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL-IAKALQRIGNC 327 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~l~~~ 327 (570)
+.-+.-+.+.+..++|+..|...-+..-.. .-+....|.+....|+...|+..|..+-...|.... .-.+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555566777888888877766654333 234466677777788888888888777654443211 12334445566
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|-|++-..-.+..-.. .+|-...+...+|..-++.|++.+|.++|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d-------------------------~n~mR~sArEALglAa~kagd~a~A~~~F~qia~- 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGD-------------------------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN- 195 (221)
T ss_pred HhccccHHHHHHHhhhccCC-------------------------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-
Confidence 66777776655554443221 4555566667777777888888888888877665
Q ss_pred CCCCHHHHHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYT 423 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~ 423 (570)
+...|....+.+.+..
T Consensus 196 Da~aprnirqRAq~ml 211 (221)
T COG4649 196 DAQAPRNIRQRAQIML 211 (221)
T ss_pred cccCcHHHHHHHHHHH
Confidence 4444555555555443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=42.94 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHhcCCH
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN--AEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~ 497 (570)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|+. ..+...+-.+...+|...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556777777888888888888888888888888888888888877655 777777777777777643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0092 Score=47.67 Aligned_cols=89 Identities=17% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
..-+..++.........++.+++...+.-.--+.|+.+..-..-|..++..|+|.+|+..++.+....|..+.+--.++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHH
Q psy3014 88 ALSYLGRYK 96 (570)
Q Consensus 88 ~~~~~g~~~ 96 (570)
|+..+|+..
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999999853
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.13 Score=41.26 Aligned_cols=115 Identities=15% Similarity=-0.017 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
...+.....+-...++.+++...+...--+.|+.+.+-..-|+++...|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44556666677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+|+..= ..+-..+++..| ++.+......++..-+
T Consensus 90 ~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 90 ALGDPSW-RRYADEVLESGA-DPDARALVRALLARAD 124 (160)
T ss_pred HcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence 8887531 122334444443 4555554444444433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.39 Score=45.09 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCC
Q psy3014 33 AYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDP 110 (570)
Q Consensus 33 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 110 (570)
-++.-++.+|++...|+.+..-+..+|.+++-.+.+++...-.|-.+.+|...-..-...+++..-...|-+++...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 566778889999999999999999999999999999999888887777776665555566778877778888776543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.053 Score=46.83 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=62.3
Q ss_pred hcCHHHHHHHHHHHhh----cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 294 RKEYDQCIEQYIQKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
...+++|++.|.-++- ...+....+..+..+|++|...|+.+....++++|+. .|.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~-------------------~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE-------------------FYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-------------------HHHH
Confidence 4456677777666652 2233335588899999999999997776666666655 2222
Q ss_pred HhcC------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 370 KAYI------DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 370 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
+... .-+...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 2211 11335567777888888888888888888877653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0017 Score=37.55 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
+|..+|.++...|+|++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777777777777777777777543
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.024 Score=53.55 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ-QSKAIDAYEKALELD 476 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 476 (570)
...|+.++...+.++..|.....-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.+++..+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 3445555555555555555555544555555555555555555566655555555554444443 555555566666666
Q ss_pred CCcHHHHHH
Q psy3014 477 ASNAEAVEG 485 (570)
Q Consensus 477 p~~~~~~~~ 485 (570)
|+++..|..
T Consensus 171 pdsp~Lw~e 179 (568)
T KOG2396|consen 171 PDSPKLWKE 179 (568)
T ss_pred CCChHHHHH
Confidence 665555543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.021 Score=42.29 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=70.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC-----------hHHHHHHHHHHHhcCCCCHHHH
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAA-----------FDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 449 (570)
++.-++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667889999999999999998877765 455566777765543 3468888899999999888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.+|.-+-...-|+++..--+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888776677778888777777765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=51.07 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
....++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999998876654444
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.02 Score=42.50 Aligned_cols=94 Identities=23% Similarity=0.406 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC------------CcchhhchhHHHhcccCHHHHHHHHhchhc-------cC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGT------------NHILFSNRSAAFAKEGNYEKALEDAEKTIS-------LK 75 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 75 (570)
...|...+..|-|++|...++++.....+ +.-++..|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34456667889999999999999986432 245677889999999999999888877774 44
Q ss_pred CC----ChhHHhHHHHHHhhccCHHHHHHHHHHhhcc
Q psy3014 76 PD----WPKGYSRKGSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 76 p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 108 (570)
.+ ...+.+.+|..+..+|+.++|+..|+.+-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 3456678999999999999999999988653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0082 Score=38.00 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
.++.+|..++++|+|++|..+.+.+++..|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455555556666666666666666666666555443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0069 Score=43.77 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=46.8
Q ss_pred HHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC--hhHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 30 AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW--PKGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 30 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|++ ..+.-.+-.++..+|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566777777888888888888888888888888888888888777664 4455555555555555444333333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.16 Score=42.52 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---hhHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---FKLIA 318 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~ 318 (570)
.-..++..+|..|.+.|+.++|++.|.++....... .+.++.+..+.+..+++.....++.++-..... .....
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 456788899999999999999999999988765332 467788888899999999999999888644222 22223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
.....-|..+...++|..|...|-.+......
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 44555677888899999999999888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0031 Score=35.32 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
++..+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=38.75 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=68.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCCC
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPD------------DPKYYSNRAACYTKLAAFDLGLKDCETCLK-------LDPKF 445 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~ 445 (570)
|.-.+..|-|++|...+.+++..... +.-.+-.|+..+..+|+|++++...++++. ++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 34456778999999999999876432 234677889999999999998887777774 45554
Q ss_pred HHH----HHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 446 LKG----WIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 446 ~~~----~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
... .+..|..+...|+.++|+..|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444 466889999999999999999998664
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.067 Score=40.97 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHhcC---hHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAA---FDLGLKDCETCLK-LDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
.....+++|+++.+..+ ..+.+..++..++ -.|. .-+..+.++.-+.+.|+|+.|+.+....++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45567788888776554 5677888888886 4444 34566778888888888888888888888888888888766
Q ss_pred HHHHHHHhcC
Q psy3014 486 YRQCSIAVSS 495 (570)
Q Consensus 486 l~~~~~~~~~ 495 (570)
-..+..++.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 6655555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.034 Score=46.43 Aligned_cols=108 Identities=10% Similarity=0.101 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
..++..+|..|.+.|+.+.|++.|.++.............+..+..+....+++.....++.++-.....+.-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d------- 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD------- 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-------
Confidence 3577899999999999999999999999877766667888999999999999999999999888763322100
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...........|..++..++|.+|...|-.+....
T Consensus 109 -------------~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 -------------WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred -------------HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 00112234445777778888888888887775443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.095 Score=49.50 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHH-HHHHHHHHHhcCHHHHHHHHHHHhhccc-C-hhHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-DITFQ-NNIAAVYFERKEYDQCIEQYIQKIENRA-D-FKLIAKA 320 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~-~-~~~~~~~ 320 (570)
.--.+.+.....+.+.|-+..|.++.+-.+.++|. |+-.. +.+-....+.++|+--++.++....... + ....+..
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 44566677788889999999999999999999999 76544 4444455677888888888877654211 1 1112455
Q ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHhcc
Q psy3014 321 LQRIGNCYKKMEDW---------------KNAKVYFEKSMSE 347 (570)
Q Consensus 321 ~~~l~~~~~~~~~~---------------~~A~~~~~~~~~~ 347 (570)
-+..+.++...++. +.|...+.+|+..
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 67778888888887 7888888888873
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.01 Score=56.09 Aligned_cols=106 Identities=25% Similarity=0.326 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL---AAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..+....-|.-.+..+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+..+..+++++|....+|+.++
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la 452 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence 3444444455555566788999999999999999999999999998875 4566788999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
.++..++++.+|+.+...+....|.+...
T Consensus 453 ~aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 99999999999999999888888865443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.13 Score=49.92 Aligned_cols=125 Identities=19% Similarity=0.074 Sum_probs=102.8
Q ss_pred CChhhHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHH-HHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKE--RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET-CLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~ 449 (570)
.++.++..+.. +...+...++...+.-.+..++..+|++..+..++|......|....+...+.. +....|++....
T Consensus 60 ~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 60 INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 55555555333 477777888988999999999999999999999999999888887777766665 888889887766
Q ss_pred HHH------HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 450 IRK------GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 450 ~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
..+ |.....+|+..++....+++..+.|.++.+...+.....+.-...
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 555 888999999999999999999999999999888888866665543
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.43 Score=46.04 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 28 IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
....+.+.......|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555567899999999999999999998999999999888 332 3456788999999999999999999
Q ss_pred HhhccCCCcHHHHHHHH
Q psy3014 104 EGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 104 ~al~~~p~~~~~~~~l~ 120 (570)
...+.+.-....+..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 88887665555555444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0058 Score=51.20 Aligned_cols=60 Identities=25% Similarity=0.436 Sum_probs=42.8
Q ss_pred HHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 422 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
..+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345567777777777777777777777777777777777777777777777777776543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.9 Score=46.15 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcc----c---CHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKE----G---NYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
...++++..+.|++|+..|++.-..-|.. .++.+..|.+.+.+ | .+++|+..|++. .-.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence 34567788899999999999999988875 46777888877643 2 578888888874 4467777889999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
|.+|..+|++++-+++|.-+++..|+++..-.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 99999999999999999999999999986543
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.36 Score=47.41 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
++.+-+.-+++..+|..++++|...+..-|.+ .....+++.||..+.+.+.|.+++++|-+.+|.++-.-...-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 44556777889999999999999999876654 457788999999999999999999999999999998888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.+....|+-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 89999999999999988876543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0069 Score=50.77 Aligned_cols=62 Identities=31% Similarity=0.572 Sum_probs=51.0
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
......++.+.|.+.|.+++.+.|.+...|+++|....+.|+++.|...|++.++++|.+..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34566788888888888888888888888888888888888888888888888888887643
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0078 Score=33.57 Aligned_cols=31 Identities=39% Similarity=0.571 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGT 43 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 43 (570)
.++.+|.+++..|++++|+..|+++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.38 Score=41.88 Aligned_cols=194 Identities=12% Similarity=0.108 Sum_probs=105.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hcccChhHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEF-------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI---ENRADFKLIAKAL 321 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~~~~~~~~~~~ 321 (570)
.+..+.++.++|++-...|.+.+.. +-. ......+-..-....+.+--...|+..+ +-..+...-....
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS-EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS-EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 4556667778888777777776542 111 1111111111112223333333333333 2222221113344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
..+|.+|+..++|.+-.+.+++.-..+.+.+-...+. ......++|..-.++|..+.+-.+-...|
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k--------------KGtQLLEiYAlEIQmYT~qKnNKkLK~lY 214 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK--------------KGTQLLEIYALEIQMYTEQKNNKKLKALY 214 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh--------------ccchhhhhHhhHhhhhhhhcccHHHHHHH
Confidence 6789999999999888877777665443321100000 12223445555567777777777777888
Q ss_pred HHHHhcCCCC--HHH----HHHHHHHHHHhcChHHHHHHHHHHHhcC-----CCCHHH--HHHHHHHHHhCC
Q psy3014 402 TEAINRNPDD--PKY----YSNRAACYTKLAAFDLGLKDCETCLKLD-----PKFLKG--WIRKGKILQGMQ 460 (570)
Q Consensus 402 ~~al~~~p~~--~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--~~~l~~~~~~~g 460 (570)
++++.+...- |.+ .-.=|..+.+.|++++|-..|-.|.+.. |....+ |.-+|..+.+.|
T Consensus 215 eqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 215 EQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8888765432 222 2223556778888999988888887653 333333 344666666655
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.074 Score=41.78 Aligned_cols=88 Identities=17% Similarity=0.027 Sum_probs=79.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.-+..+..........++.+++...+...--+.|+.+..-..-|.+++..|+|.+|+..++...+..|..+-+.-.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34567777888888899999999999999889999999999999999999999999999999999888888888899999
Q ss_pred HhhccCHH
Q psy3014 89 LSYLGRYK 96 (570)
Q Consensus 89 ~~~~g~~~ 96 (570)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 99999864
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.22 Score=38.24 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 377 KAEEAKERGNELFKNG---KYADAVKEYTEAIN-RNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
.....+++++++.+.. +..+.+.+++..++ .+|. ..+..+.+|..+++.++|+.|+.+.+..++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788888888665 45678899999996 4554 45688899999999999999999999999999999887655
Q ss_pred HHHH
Q psy3014 452 KGKI 455 (570)
Q Consensus 452 l~~~ 455 (570)
.-.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.16 Score=40.02 Aligned_cols=82 Identities=10% Similarity=-0.125 Sum_probs=58.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+......-...++.+++...+...--+.|+.+.+-..-|+++...|+|.+|+..++...+-.+..+..--.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444557777777777777767777777777777777777777777777777777776666666667777777777
Q ss_pred CH
Q psy3014 461 QQ 462 (570)
Q Consensus 461 ~~ 462 (570)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 64
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.9 Score=41.90 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCc
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKL---DPK----FLKGWIRKGKILQGMQQ-QSKAIDAYEKALELDASN 479 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~ 479 (570)
-++.+|.++..+|+...|..+|..+++. ..+ .|.++|.+|.++..+|. ..++..++.+|-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4677899999999999999999988743 111 36788999999999988 999999999998877554
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.3 Score=40.08 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=72.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHH---HHHHHHHHHHHhcChHH--HHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPD---DPK---YYSNRAACYTKLAAFDL--GLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
..-|.++....+|..|..+|-++++-... +.. ++-.+-.|-...+..++ ++-.-+.+++.......+....+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 34477777779999999999999875321 223 22233334444555554 44455667777777888888888
Q ss_pred HHHHh--CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 454 KILQG--MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 454 ~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
..+.+ +.+|+.|+..|..=+..|| -+..++..++-.+
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNL 331 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHH
Confidence 88855 4689999999988887665 4555555554443
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.1 Score=43.57 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=63.6
Q ss_pred ccCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----hc------------
Q psy3014 260 KKNFEEALAHYNKAVEF------------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI-----EN------------ 310 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l-----~~------------ 310 (570)
...|++|...|.-+... .|.+...+..++.+...+|+.+-|....++++ ..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877665 46667889999999999999998888888877 11
Q ss_pred ----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 311 ----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 311 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.|.+....-+++..-..+.+.|-+..|.++++-.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 2222333444455555666778888888888888873
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.024 Score=49.98 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR-KGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++....|+++..|...+..-.+.|-|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|++|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3444456666666666666666666666666677777777777666655 344455666777777777777777777776
Q ss_pred HHHHHH
Q psy3014 482 AVEGYR 487 (570)
Q Consensus 482 ~~~~l~ 487 (570)
+|..+-
T Consensus 178 iw~eyf 183 (435)
T COG5191 178 IWIEYF 183 (435)
T ss_pred HHHHHH
Confidence 665443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.3 Score=39.02 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhh---cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
.+..+++..|.|.+|+......+. ...+-.....++..-..+|....+..++...+..+-.....
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans------------ 197 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANS------------ 197 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc------------
Confidence 445556666666666665555441 11111122444455555555555555554444433321110
Q ss_pred HHHHHHHHhcCChhhHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHH-----HHHHHHHHHHhcChHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAE--EAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKY-----YSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~-----~~~la~~~~~~~~~~~A~ 432 (570)
+ ..|.... .-..-|..+....+|..|..+|-++++-... +..+ |..+..+. .+..++-.
T Consensus 198 --------~-YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk 266 (421)
T COG5159 198 --------A-YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVK 266 (421)
T ss_pred --------c-CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHH
Confidence 0 2333322 2233466777888999999999999875332 2322 23333333 33333322
Q ss_pred HHH--HHHHh-cCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCC
Q psy3014 433 KDC--ETCLK-LDPKFLKGWIRKGKILQG--MQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 433 ~~~--~~al~-~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~ 478 (570)
..+ +..++ .+.....+....+..+-. +.+|..|+..|..-+.-||-
T Consensus 267 ~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 267 AVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 222 23333 344566777777777743 46888999888887766654
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.042 Score=50.66 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCC----------cchhhchhHHHhcccCHHHHHHHHhchhc
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLD--------GTN----------HILFSNRSAAFAKEGNYEKALEDAEKTIS 73 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 73 (570)
..-..-|...+++++|..|..-|..+|++- |.. ...--.+..||+++++.+-|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 344555667778888888888888887752 221 12234688999999999999999999999
Q ss_pred cCCCChhHHhHHHHHHhhccCHHHHHHHHHHhh---ccCCCcHHHHHHHHHHHH
Q psy3014 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGL---KLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 74 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~ 124 (570)
++|.+..-++..|.|+..+.+|.+|-+.+--+. -+...+......+..+|.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 999999999999999999999999987665443 333433333333444443
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.044 Score=53.33 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN------HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..+...|...|+..+|..++++|...+..-|.+ +.....++.||+.+.+.+.|.+++++|-+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 467788899999999999999999999987765 44567889999999999999999999999999999888888
Q ss_pred HHHHhhccCHHHHHHHHHHhhccC
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLD 109 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~ 109 (570)
-.+....|.-++|+.+........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888889999999999988776543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.95 Score=36.69 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCCCHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTKLAAFDLGLKDCETCL-KLDPKFLKGWIRK 452 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l 452 (570)
.-+.+..|.+....|+...|+..|.++-.-.|- .-.+...-+.++...|-|+.-....+..- ..+|-...+.-.|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 445677889999999999999999998765442 12345566778888999988766655432 2345455677789
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
|..-++.|++..|..+|.+... |..-+....+.+++...+
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 9999999999999999999887 555555555555554443
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.5 Score=41.08 Aligned_cols=133 Identities=12% Similarity=0.089 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----hHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK--YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA----FDLGLK 433 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----~~~A~~ 433 (570)
++..+.....++..+|+...+|+.+..++.+.+. +..=+..++++++.+|.+..+|..+=.+...... ..+=++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 3444445555555999999999999999987764 6888999999999999998887776655554433 466778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh------CCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 434 DCETCLKLDPKFLKGWIRKGKILQG------MQQ------QSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 434 ~~~~al~~~p~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
+..+++..++.+..+|.....++.. .|+ ...-++.-..|+-.+|++..+|....+.+.+
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8899999999999999888777652 232 3455677778888999999999886666655
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.6 Score=40.42 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHCCCHHH-------HHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 377 KAEEAKERGNELFKNGKYAD-------AVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~-------A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
.+..+..+|++|...|+.+. |...|.+++..... ...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45666777777777777443 33333333332211 1345555666666666666666666665554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.16 Score=47.93 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNA 337 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 337 (570)
...|+.-.|-.-...++...|.+|......+.+...+|.|+.+...+..+-..-... ..+...+-.....+|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~---~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT---DSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC---chHHHHHHHhhhchhhHHHH
Confidence 345666666666666666666666666666666666666666666655443332222 23334444445555566655
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 338 KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
...-.-.+. ..-+++++...-+......|-+++|...+++.+.++|..
T Consensus 377 ~s~a~~~l~--------------------------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLS--------------------------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhc--------------------------cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 555554444 333344444444444455555666666666666665543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.095 Score=49.30 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=65.0
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|+.-.|-+-+..++...|.. +......+.+...+|.|+.+...+..+-..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-------------------------- 352 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKI-------------------------- 352 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhh--------------------------
Confidence 455555555555666655555 444555566666666666666555433321
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
-.....+...+-......|++++|.....-.+.-.-.++++....|.....+|-+++|..++++.+.++|.
T Consensus 353 ~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 353 IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 11111222333344455566666666655555544455555555555555566666666666666666554
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.38 Score=51.61 Aligned_cols=169 Identities=11% Similarity=0.081 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCHHHHHH------HHHHHh-hcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIE------QYIQKI-ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~------~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
..|......|.+.+|.+ .+.... .+.|+. ...+..++.++...|++++|+..-.++.-.......
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~---~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g----- 1008 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEV---ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG----- 1008 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhH---HHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc-----
Confidence 34444455556665555 333222 334555 888889999999999999998888777653322100
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcChHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--------NPDDPKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~ 430 (570)
...|+....+..++...+..++...|...+.++..+ .|.-.....+++.++...++++.
T Consensus 1009 -------------~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1009 -------------KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred -------------CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 045667777888888888888999999998888764 55566677889999999999999
Q ss_pred HHHHHHHHHhcCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 431 GLKDCETCLKLDPK--------FLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 431 A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
|+.+.+.|+..... ....+..+++.+..+|++..|....+....+
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99999999885322 3445566777777777777777666665543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.6 Score=42.76 Aligned_cols=72 Identities=6% Similarity=-0.083 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNN--IAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 340 (570)
++..+...+.++|.++..+.. ++..+...+....+.-....++..+|++ ..+..+++......|....+...
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN---CPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc---chHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444455555544322 2444444555555555555555555555 55555555555444444443333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.073 Score=31.83 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++.++|.+|..+|++++|..++++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888888888888888887653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=4.2 Score=39.29 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=64.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+-.++....++.-....+.+.+... .+-.+++.++.||... ..++-...+++..+.+-++ ...-..++..|.. +
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD---vv~~ReLa~~yEk-i 145 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND---VVIGRELADKYEK-I 145 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh---HHHHHHHHHHHHH-h
Confidence 3334444444555556677777665 5567788899999888 6677788888888888777 6666677777766 8
Q ss_pred CHHHHHHHHHHHhcc
Q psy3014 333 DWKNAKVYFEKSMSE 347 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~ 347 (570)
+.+.+..+|.+++..
T Consensus 146 k~sk~a~~f~Ka~yr 160 (711)
T COG1747 146 KKSKAAEFFGKALYR 160 (711)
T ss_pred chhhHHHHHHHHHHH
Confidence 888999999998864
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.3 Score=42.98 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3444556667777888888888888888887777777788888888888888888887777777766543
|
|
| >smart00727 STI1 Heat shock chaperonin-binding motif | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.079 Score=31.61 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=35.0
Q ss_pred CchHHHhhcCHHHHHHHHHhhcCHHHHHHhhc-CHHHHHH
Q psy3014 507 DPEVQQILRDPAMRLILEQMQNDPRALSDHLK-NPEIASK 545 (570)
Q Consensus 507 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 545 (570)
+|++...+.+|.+..++..+..+|.....+++ +|.++..
T Consensus 1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~ 40 (41)
T smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL 40 (41)
T ss_pred CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence 57888889999999999999999999999998 9998753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.3 Score=41.57 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=75.0
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (570)
....++++++.+..... ++-|.- ......++..+.+.|.++.|+...+ + +...+. +..+.|+.+
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D------~~~rFe---LAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----D------PDHRFE---LALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------------HHHHHH---HHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----C------hHHHhH---HHHhcCCHH
Confidence 34578888877777522 222222 3445666777777888877776431 2 233333 346678887
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
.|.+.. ...+++..|..+|...+.+|+++-|..+|.++-. +
T Consensus 336 ~A~~~a-------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~ 376 (443)
T PF04053_consen 336 IALEIA-------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------F 376 (443)
T ss_dssp HHHHHC-------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------H
T ss_pred HHHHHH-------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------c
Confidence 777664 3334677899999999999999999999988632 3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 416 SNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 416 ~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..+..+|.-.|+.+.=.+..+.+..
T Consensus 377 ~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 377 SGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cccHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455566667776555555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.073 Score=47.07 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=70.5
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN-RAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
..|.++..|...+....+.|-|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+++..|+.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 678889999998888888999999999999999999999999877 5556778899999999999999999999988765
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.79 Score=49.32 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----cc
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALA------HYN-KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RA 312 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~ 312 (570)
..+.-....|......|.+.+|.+ .+. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345555667777888888888887 444 223457888999999999999999999999998887632 12
Q ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
+.+.....+.+++...+..++...|...+.++.....-. .-...|.......+++.++...+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls------------------~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS------------------SGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc------------------cCCCCCchhhhhhHHHHHHhhHH
Confidence 333347788888888888888888888888776521100 00046667777788899999999
Q ss_pred CHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINRNPD--------DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
+++.|+.+.+.|+..+.. ....+..++.++...+++..|+...+....+
T Consensus 1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 999999999999885321 3445666777777777777777666655443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.68 Score=31.90 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhcCHHHHHHHHHHHh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI---AAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~~l 308 (570)
.+......|.-++..++.++|+..++++++..++.+.-+..+ ..+|...|+|.+.+.+--+-+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777788888888888888888777766554444 445677777777776654433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.18 Score=28.90 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHhhCCC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDA--YEKALELDAS 478 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~--~~~al~~~p~ 478 (570)
+.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666666666666666 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.13 Score=46.64 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------C--------CcchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDG-----------T--------NHILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
..+.....|...+..++|+.|..-|.+++..-. + -...+.+++.+-+..+.+..|+.....
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 345556678889999999999999988876421 1 123456788899999999999999999
Q ss_pred hhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 71 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++..+++...+++.++..+..+.++++|++.++.+....|++..+...+......
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999998877766655443
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=4.1 Score=36.92 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=102.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+.+-+...+..+..+-++.-..+++++|....++..++.- ..--..+|.+.++++++.... .++.......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~-------~yr~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET-------IYRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH-------HHhhHHHHhh
Confidence 3455566677888888888899999999988888777643 233456777777777754222 1222222222
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|...+|.. .. ...-...+...++.+..++|+..+|++.++...+..|-
T Consensus 259 ~~~~~da~~------rR-------------------------Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 259 QSPQHEAQL------RR-------------------------DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hccchhhhh------hc-------------------------ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 222111110 00 00011223345677777788888888887777766652
Q ss_pred C--HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCCCHHHHHHHHH-------------HHHhCC---CHHHHHHHHHH
Q psy3014 411 D--PKYYSNRAACYTKLAAFDLGLKDCETCLKL-DPKFLKGWIRKGK-------------ILQGMQ---QQSKAIDAYEK 471 (570)
Q Consensus 411 ~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~-------------~~~~~g---~~~~A~~~~~~ 471 (570)
. ..++-++-..+....-|......+-+.-++ -|.....-+.-+. .-.+.| --..|++...+
T Consensus 308 ~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihR 387 (556)
T KOG3807|consen 308 LTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHR 387 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHH
Confidence 2 123334444444443333332222222111 1222221111111 111112 12468888899
Q ss_pred HHhhCCCcHHHHHHHH
Q psy3014 472 ALELDASNAEAVEGYR 487 (570)
Q Consensus 472 al~~~p~~~~~~~~l~ 487 (570)
|++.+|.-+..+..+.
T Consensus 388 AvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 388 AVEFNPHVPKYLLEMK 403 (556)
T ss_pred HhhcCCCCcHHHHHHH
Confidence 9999998877765443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.8 Score=36.30 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAK 319 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~ 319 (570)
..+...+++.|.|.+|+......+.. .|+-..++..-..+|....+..++...+..+-.. .|.. ..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq-lqa~ 207 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ-LQAQ 207 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH-HHHH
Confidence 34678889999999999988877643 3455677888888999999988888887766532 3332 1122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
.-..-|.......+|..|..+|-.+++-+.
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhccc
Confidence 223336666778899999999999988554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.13 Score=30.67 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEF 276 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 276 (570)
.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 44556666666666666666666666654
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.7 Score=36.79 Aligned_cols=172 Identities=18% Similarity=0.084 Sum_probs=113.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEF----D--PTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKA 320 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~ 320 (570)
.+...|+..++|.+|+......+.. + +.-.+++..-..+|+...+..+|...+..+-.. .|.. ..+..
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPq-lQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQ-LQATL 211 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHH-HHHHH
Confidence 4788899999999999988777653 2 223566677788899999999998888777532 2221 11233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH--HH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD--AV 398 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--A~ 398 (570)
=..-|.++....+|..|..+|-.+.+-+...+ .++.-...+..+-.+-...+..++ ++
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~--------------------~~v~A~~sLKYMlLcKIMln~~ddv~~l 271 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--------------------DDVKALTSLKYMLLCKIMLNLPDDVAAL 271 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccC--------------------CcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33446677777899999999999988544321 122223333333333444455554 33
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH--hcChHHHHHHHHHHHhcCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTK--LAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~ 444 (570)
-.-..+++....+..+....|.++.. +.+|+.|+..|..-+..+|-
T Consensus 272 ls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 272 LSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 33455666677778888888887754 56788999999888877663
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.38 Score=44.68 Aligned_cols=90 Identities=19% Similarity=0.358 Sum_probs=72.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNP--------D-----D-----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
|..++++++|..|.--|..++++.. . + ..+--.+..||.++++.+.|+...-+.+.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 5566777777777777777776521 1 1 12345688999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.-+...|.|+..+.+|.+|-..+.-+.-
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887766643
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.67 Score=40.88 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
-.....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3444455556677788888888888888888888888888888888888888888888888888888873
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.6 Score=39.50 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----CCHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA--FDLGLKDCETCLKLDPKFLKGWIRKGKILQGM----QQQSKAI 466 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~ 466 (570)
-.++-+.+...+++.+|+...+|+.+.+++.+.+. +..=+..++++++.+|.+..+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45677788889999999999999999999998774 57889999999999999988886655444332 2356778
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 467 DAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
++..+++.-++.|-.+|..-..++..+-
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~ 197 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLH 197 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence 8899999999999999999888887543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.1 Score=41.30 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=109.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------h
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEF--------------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKI------E 309 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l------~ 309 (570)
|..+|......=+++-|.+.|.++-.+ ...-|. -..+|.++...|++.+|.+.|.+.= +
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 455666666667777787777765432 111111 2456777778888888888886542 2
Q ss_pred cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cc-CC--HHHHHHHHHHHHHHHHH----------HHHhc
Q psy3014 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EH-RT--PEIRTLISEMEKKIKEE----------EKKAY 372 (570)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~--~~~~~~~~~~~~a~~~~----------~~~~~ 372 (570)
+..+- -.+..+.-+...|..++-....++--+ .. |. ++.+...|+.++|+... +-...
T Consensus 667 myTDl-----RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 667 MYTDL-----RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK 741 (1081)
T ss_pred HHHHH-----HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh
Confidence 22211 122333444444443333332222111 00 11 23333344455544432 11222
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
++...-+.+...+..+.+...+.-|.+.|.+.-.. -.+...+...++|++|....++.-+.-| ..++-.
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~py 810 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPY 810 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccccc---cccchH
Confidence 34444455555566666666666666666654221 2345566777888888777666433333 456667
Q ss_pred HHHHHhCCCHHHHHHHHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~a 472 (570)
|+.+....+|++|.+.|-+|
T Consensus 811 aqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 811 AQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHhhhhhhHHHHHHHHHHh
Confidence 77777777777777777665
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.21 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCC
Q psy3014 12 SLLKDKGNAALQANNFIEAIEA--YSEAIKLDGT 43 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~ 43 (570)
+.++..|..+..+|+|++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 5677778888888888888888 4466666654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.1 Score=40.13 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
....++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44667778899999999999999999999999999999999999999999999999999988764
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.62 Score=34.18 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 312 (570)
..+.|+|.+|++.+.+........ ..+...+|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456788888887777777653221 34567788888888888888888888886543
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.15 Score=46.28 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=91.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNP-------------------DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
.|...++.++++.|..-+.+++..-. .-...+.+++.+-...+.+..|+.....++..+++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 35556777777777777776654311 11235667888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
...+++..+..+....++++|++.++.+....|++..+...+..+.....+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999998888877666655
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.14 Score=29.69 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
+++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456777888888888888888888887753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.73 Score=31.76 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
...|.-++..++.++|+..++++++..++.+....++..+..+|...|++.+.+.+--.-+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888999999999999999888866677778888899999999998887655444
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.34 E-value=4 Score=34.46 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=56.0
Q ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhCCCHH
Q psy3014 389 FKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK----FLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~ 463 (570)
..+..-++|...|-++-... -+++...+.+|..|. ..+.++|+..+-+++++.+. +++.+..++.++.++|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34433467777766553321 146888888887766 56889999999999987543 4788888999999999988
Q ss_pred HHHH
Q psy3014 464 KAID 467 (570)
Q Consensus 464 ~A~~ 467 (570)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=15.0
Q ss_pred hHHhHHHHHHhhccCHHHHHHHHH
Q psy3014 80 KGYSRKGSALSYLGRYKESISTYE 103 (570)
Q Consensus 80 ~~~~~la~~~~~~g~~~~A~~~~~ 103 (570)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.46 Score=34.84 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHhcChHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 423 TKLAAFDLGLKDCETCLKLDPK---------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 423 ~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.+.|+|..|++.+.+.+..... ...++.++|.++...|++++|+..++.++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567777776666666654221 235667788999999999999999999988753
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.14 Score=29.75 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKL 40 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 40 (570)
+.+..+|.+-+..++|++|+.-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.5 Score=39.39 Aligned_cols=211 Identities=11% Similarity=0.019 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhh---cccCh
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFD-PT--------DITFQNNIAAVYFERKEYDQCIEQYIQKIE---NRADF 314 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~ 314 (570)
+-.++.....++.+.++++|..+-+..+..- -. ....|+.+..+|...|+...-...+...+. +..+.
T Consensus 126 aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~ 205 (493)
T KOG2581|consen 126 AYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE 205 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc
Confidence 3333444445566788999988887766431 11 145667777777778876665555555553 34455
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
...+...+.+-..|...+.|+.|.....+..- |... .+...+...+.+|.+..-+++|
T Consensus 206 e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~--------------------snne~ARY~yY~GrIkaiqldY 263 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAA--------------------SNNEWARYLYYLGRIKAIQLDY 263 (493)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--cccc--------------------ccHHHHHHHHHHhhHHHhhcch
Confidence 55666667777788888888888777666543 1110 2334566778899999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhCCCHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPKY------YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI--LQGMQQQSKAI 466 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~ 466 (570)
..|.++|-.|+...|.+... .-.+..+-.-+|++.+=.-..+..++ .....|+.+... .-...+|.+-+
T Consensus 264 ssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL~~Yf~Lt~AVr~gdlkkF~~~l 340 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSLRPYFKLTQAVRLGDLKKFNETL 340 (493)
T ss_pred hHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999974332 22223333344555443222221111 123344544443 23344566777
Q ss_pred HHHHHHHhhCCCcHHH
Q psy3014 467 DAYEKALELDASNAEA 482 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~ 482 (570)
+-|..-+..+....-+
T Consensus 341 eq~k~~f~~D~ty~Li 356 (493)
T KOG2581|consen 341 EQFKDKFQADGTYTLI 356 (493)
T ss_pred HHHHHHHhhCCcchHH
Confidence 7777777766654433
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=92.75 E-value=7.5 Score=35.31 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhcc
Q psy3014 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 54 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 108 (570)
...+..+..+-++....+++++|.+..++..+|.-- .--..+|.+.++++++.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 334455566667777777777777777777776532 22355677777776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.18 Score=26.38 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.47 Score=48.02 Aligned_cols=119 Identities=23% Similarity=0.352 Sum_probs=98.8
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHh--cccCHHHHHHHHhchhccCCCChh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFA--KEGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.-..+..+...|+..++.++|..|.--|..++.+-|.+ ...+.+.+.|++ ..|+|.+++..+.-++...|....
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~ 128 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK 128 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence 34456677888999999999999999999999888853 445566777765 467999999999999999999999
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
+++.++.+|...++++-|++...-....+|.+..+...+..+...
T Consensus 129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999988899999997666544444433
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=92.23 E-value=9 Score=35.00 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
.-+|..-...|.-.....| +|.+-.|.+....+..-...++...+..... -..+...+-..|.++.++|+.++|...
T Consensus 309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 3467777777776666666 5667777888777777778888777766554 233445667799999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHH
Q psy3014 469 YEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~ 488 (570)
|++++.+.++..+.......
T Consensus 388 ydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 388 YDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHhcCChHHHHHHHHH
Confidence 99999999988776654443
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=92.22 E-value=10 Score=35.63 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=89.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhc-cc-----ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIEN-RA-----DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~-~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
....++..+++.+|..+-...+.. .- -+-..+..|+.+..+|...|+...-...+...+....-..
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh-------- 203 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH-------- 203 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC--------
Confidence 333455567777777776665521 11 1123367788888888888887666666655444322210
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NP--DDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.....+.....+-..|...+.|+.|.....+..-- .. ..+..++.+|.+..-+++|..|.+++-
T Consensus 204 ------------d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 204 ------------DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred ------------cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Confidence 12233445566777888888888888888877522 11 224567778888888888999999998
Q ss_pred HHHhcCCCC
Q psy3014 437 TCLKLDPKF 445 (570)
Q Consensus 437 ~al~~~p~~ 445 (570)
+|+...|.+
T Consensus 272 qa~rkapq~ 280 (493)
T KOG2581|consen 272 QALRKAPQH 280 (493)
T ss_pred HHHHhCcch
Confidence 888888874
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.93 E-value=21 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
.+++|+..|++.. ..|.-|--|...|.+|.++|++++-++++.-+++..|.++.+
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 4666666666643 345556666677777777777777777777777777766443
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=91.92 E-value=9.3 Score=35.92 Aligned_cols=178 Identities=15% Similarity=0.116 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-------C-CCH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD-------P-KFL 446 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p-~~~ 446 (570)
-.++..+|..|...|+++.|+++|.++-....+ ....+.++-.+-..+|+|..-..+-.++...- + -.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456777899999999999999999997655443 24567777788888899988777777776541 0 012
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh--------hCCCcHHHHHHHHHHHHHhcC--------CHHHHHHHHcCCchH
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALE--------LDASNAEAVEGYRQCSIAVSS--------NPEEVRKRAMGDPEV 510 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~~~--------~~e~~~~~~~~~p~~ 510 (570)
.....-|.+...+++|..|..+|-.+.. +.|.+..++.+|..+ .-.++ ..+........+|.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL-Atfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL-ATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh-ccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 3445566677777799999998877643 235666665554432 22222 112333444556777
Q ss_pred HHhhc---CHHHHHHHHHhhc-CHHHHHHhhcCHHHHHHHHHHHhcCchh
Q psy3014 511 QQILR---DPAMRLILEQMQN-DPRALSDHLKNPEIASKIQKLVNSGLIV 556 (570)
Q Consensus 511 ~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (570)
.+++. ...+...++-+++ .|..+...+=.|.|...++++..-+++.
T Consensus 309 r~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llq 358 (466)
T KOG0686|consen 309 REILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQ 358 (466)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHH
Confidence 65543 3344555555543 3443334444566666666666655443
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=91.75 E-value=15 Score=36.94 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=33.8
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccC-------------CCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLK-------------PDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
|-.+|.-.+..=+++-|.+.|.++-.+. .....--..+|.++...|++.+|.+.|.+.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 4455555555555666666665543220 011112355788888888888888888653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.3 Score=39.69 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 446666777777777777777777777777777777777777777777777777777776655
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=91.35 E-value=16 Score=36.14 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=110.5
Q ss_pred hcCHHHHHHHHHHHhhcccCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy3014 294 RKEYDQCIEQYIQKIENRADF---------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~ 364 (570)
...|++|...|.-+....+.+ +.-...+..++.+...+|+.+-|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~----------------- 313 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYV----------------- 313 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH-----------------
Confidence 345778888887776443221 223788999999999999999998888887641
Q ss_pred HHHHHHhc--------------CChhhHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-Hh
Q psy3014 365 KEEEKKAY--------------IDPVKAE---EAKERGNELFKNGKYADAVKEYTEAINRNPD-DPKYYSNRAACYT-KL 425 (570)
Q Consensus 365 ~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~ 425 (570)
++++.. ..|.+-. +++..-..+.+.|-+..|.++++-.++++|. +|.+...+-.+|. +.
T Consensus 314 --~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra 391 (665)
T KOG2422|consen 314 --FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA 391 (665)
T ss_pred --HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH
Confidence 111111 2333333 3334455667899999999999999999998 7766555555443 44
Q ss_pred cChHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhhCCC
Q psy3014 426 AAFDLGLKDCETC-----LKLDPKFLKGWIRKGKILQGMQQ---QSKAIDAYEKALELDAS 478 (570)
Q Consensus 426 ~~~~~A~~~~~~a-----l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 478 (570)
.+|.=-+..++.. +..-|+.+. -..+|..|..... .+.|...+.+|+.+.|.
T Consensus 392 reYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 392 REYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 5555555555544 344565442 2356777766665 78899999999999985
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.89 Score=41.66 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
|..+|.+|+.+.|++...+..+|.++...|+.-.|+-+|-+++-..--.+.+..+|.....+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554333334455555555444
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=91.28 E-value=20 Score=37.16 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=55.2
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+.++.+..+.=-...+.-+.=+..++.-+.+++.+...+..|-.++...|+.++-...-..+..+.|.++..|....
T Consensus 78 sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 78 SSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred cCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 33444444333344445556667777777888888888888999999999998888777788888888887776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.10 E-value=7.5 Score=38.10 Aligned_cols=132 Identities=14% Similarity=0.012 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
.....++..+.+.|.++.|+.+.+ ++...+.+| .+.|+.+.|.+..++. ++ ...|..+|..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~~~a~~~-----~~---~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIALEIAKEL-----DD---PEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHHHHCCCC-----ST---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHHHHHHhc-----Cc---HHHHHHHHHH
Confidence 345667778888898888876643 456555554 6789999988765332 34 6799999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
....|+++-|..+|.++-. +..+..+|...|+.+.-.+....+...
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------------------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------------------------------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhhcC----------------------------------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999998865 344566667777765555555544433
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
... ...-.++..+|+.++.++.+.+
T Consensus 403 ~~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GDI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 221 1122234445666665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.5 Score=35.59 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=65.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh-hHHHHHHHHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-KLIAKALQRIGNCYKK 330 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~ 330 (570)
+...+...-.-+.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.. ...++++..|+.++..
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3344445545577877777654332 256888899987776 778999999999999876544 4558999999999999
Q ss_pred cCCHHHHHH
Q psy3014 331 MEDWKNAKV 339 (570)
Q Consensus 331 ~~~~~~A~~ 339 (570)
.|+++.|.-
T Consensus 191 ~~~~e~AYi 199 (203)
T PF11207_consen 191 LKNYEQAYI 199 (203)
T ss_pred hcchhhhhh
Confidence 999998853
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=90.67 E-value=18 Score=35.42 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--C---CHHHHHHHHHHH--HHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINR--NP--D---DPKYYSNRAACY--TKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~---~~~~~~~la~~~--~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
...+....+.++...|.+.+|...+-+.... .. . .+.++-..|.|+ ........-..-++ ....
T Consensus 299 a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R-------K~af 371 (414)
T PF12739_consen 299 ALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFR-------KYAF 371 (414)
T ss_pred hHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhH-------HHHH
Confidence 3445666777788888888877776666554 22 2 333445555555 11100000000000 0122
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
-+..-|.-|.+.|+...|..+|.+|+....
T Consensus 372 ~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 372 HMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 233456788999999999999999998764
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=89.90 E-value=1 Score=24.71 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|+.+.|...|++++...|.++.+|..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777666544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=89.79 E-value=28 Score=36.27 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh---hccCHHHHHHH
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS---YLGRYKESIST 101 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 101 (570)
+.-++=+..++.-+.+++.+...+..|-.++...|++++-...-.++..+.|.++..|.....-.. ..+...++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 334455667777788888888888999999999999998888777778888888877766554332 23667778888
Q ss_pred HHHhhccCCCcHHHHHHHHHH
Q psy3014 102 YEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 102 ~~~al~~~p~~~~~~~~l~~~ 122 (570)
|++++.-. +....|...+..
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y 192 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNY 192 (881)
T ss_pred HHHHhccc-ccchHHHHHHHH
Confidence 88888533 344444443333
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.4 Score=39.16 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
.+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455667777888888888888888888888888888888888888877777777654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.02 E-value=24 Score=34.50 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 277 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
.|-+-..+..+-.++....++.-....+.+.+....+ -.+++.++.+|... ..++-....++.++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~----kmal~el~q~y~en-~n~~l~~lWer~ve---------- 126 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES----KMALLELLQCYKEN-GNEQLYSLWERLVE---------- 126 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHhc-CchhhHHHHHHHHH----------
Confidence 3445555555666666666666667777888876655 57888899999887 44555666666666
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC--C---HHHHHHHHHHHHHhcChHH
Q psy3014 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-PD--D---PKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~--~---~~~~~~la~~~~~~~~~~~ 430 (570)
.+-++...-..++..|.+ ++-+++..+|.+++... |. + .++|-.+-.. --.+.+.
T Consensus 127 ----------------~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~ 187 (711)
T COG1747 127 ----------------YDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDF 187 (711)
T ss_pred ----------------hcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHH
Confidence 555555556666666655 77788888888877542 21 1 1222222110 0112222
Q ss_pred HHHHHHHHHhcCC-CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 431 GLKDCETCLKLDP-KFLKGWIR-KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 431 A~~~~~~al~~~p-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
-+....+.-.... ......+. .-.-|....++.+|+..+...++++..+..++.++...++.
T Consensus 188 fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 188 FLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 2222222221111 11112221 22334556678888888888888888877777776666555
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.93 E-value=3.9 Score=34.76 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=62.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
...+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++......|..+-.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999886555555555444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.8 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKI 308 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l 308 (570)
.+|..|..+|+++.|.+.++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34445555555555555555544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.6 Score=39.97 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
|..+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777677766666665544445566666666655
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=88.57 E-value=18 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.-.++..+..+|..+++.|++.+|..+|-
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33578899999999999999998887774
|
; PDB: 3LKU_E 2WPV_G. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.54 E-value=2.7 Score=25.44 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
+.+|..|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=88.30 E-value=25 Score=33.84 Aligned_cols=63 Identities=10% Similarity=0.143 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHhcCHHHHHHHHHHHhhc
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT--FQNNI--AAVYFERKEYDQCIEQYIQKIEN 310 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~l~~ 310 (570)
......+..+++.++|..|...+......-|.+.. .+..+ |.-+...-++.+|.+.++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566777888999999999999998885333333 33333 44456677888888888887654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.4 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAV 290 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 290 (570)
|+++.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457788888888888888888888766544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.74 E-value=13 Score=29.72 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 305 (570)
-..+...+.+...+.+++.++..++.++..+..+..+|... +..+.++.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 33445567888899999998888887788888888887654 3444555554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.35 E-value=4 Score=36.40 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
.+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.+++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444556666777777777777777777777777777767777777666666655543
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=87.19 E-value=28 Score=34.07 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=30.8
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.-.+|.+++.+|+|+-|...|+.+.+-.. +..+|..++.+...
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em 253 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEM 253 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHH
Confidence 44589999999999999999998776433 34455555554433
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.1 Score=35.54 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG 59 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 59 (570)
++.+...+...+..|+|.-|..+.+.++..+|++..+...++.++.++|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666666555544
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=86.74 E-value=44 Score=34.98 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHH---HHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI---SEMEKKIK 365 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~a~~ 365 (570)
.++.+..-|+-|+...+.- ..+++ ....++...|..++..|++++|...|-+.+..-..+.+.... .+..+-..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHH
Confidence 4456666677777655432 22222 246677777888888888888888888887766555443322 11222222
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
.++.+....-.+.+--..+-.+|.+.++.++-
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHH
Confidence 33333333333333334455666666655443
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=86.36 E-value=25 Score=33.81 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI--GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
...+.-.+..++|..|...+..+...-|.... ...+..+ |..+...-++.+|...+++.+.
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455566666666666666666654222211 1222222 2233344555555555555443
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=86.26 E-value=3.8 Score=32.57 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+.....+.-.+..|++.-|.+....++..+|+|..++...+.++.+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45566677777888899999999999999999999999999999888886
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=86.21 E-value=23 Score=31.32 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHh-----cCCCCHH---HHHHHHHHH-HhCCCHHHHHHHHHHHHh
Q psy3014 429 DLGLKDCETCLK-----LDPKFLK---GWIRKGKIL-QGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 429 ~~A~~~~~~al~-----~~p~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~al~ 474 (570)
+.|...|++|+. +.|.+|. ...+.+..| .-+|+.++|+...++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555555543 3566553 223344444 557888888887777764
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=47 Score=34.66 Aligned_cols=25 Identities=4% Similarity=-0.136 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSE 36 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~ 36 (570)
...+..+...+..|++..+...-.+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~ 58 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPT 58 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5678889999999999887666554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.66 E-value=17 Score=31.14 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=47.9
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
..+++.+..++|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-.+.|+...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34566777788888888888888888888877888888888888888888888888777643
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=84.94 E-value=25 Score=33.28 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
.++..+|.-|...|+.+.|++.|-++-....+...+...+.++-.+-...|+|..-..+..++.+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~----------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA----------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh-----------
Confidence 567889999999999999999999988777777667888899999999999999999988888764200
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.......-| +......|.+.+..++|..|..+|-.+.
T Consensus 220 -----~~~~~q~v~--~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 -----NENLAQEVP--AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred -----hhhHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 000000111 2244555666777778999888887664
|
|
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.34 E-value=29 Score=30.99 Aligned_cols=127 Identities=10% Similarity=0.007 Sum_probs=89.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHhcChHHHHHHHHH
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKN--GKYADAVKEYTEAINRNPDDPKYYSNRAACY------TKLAAFDLGLKDCET 437 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~ 437 (570)
.+..+...+|.+..+|...-.++-.. .++..-....++.++.++.+..+|..+-.+. .....+..-.++-..
T Consensus 96 ~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~ 175 (328)
T COG5536 96 FLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTS 175 (328)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHH
Confidence 34444448888888888777776554 6678888888999999999887776655544 223334444566667
Q ss_pred HHhcCCCCHHHHHHH---HHHHHhCCC------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 438 CLKLDPKFLKGWIRK---GKILQGMQQ------QSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 438 al~~~p~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+..+...
T Consensus 176 ~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 176 LIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 788899998888775 333344554 4566777777888899999999888777665
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=83.28 E-value=64 Score=35.38 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++...|..+...+.+++|.-.|+++=+....-..+...+++.+++....+...........-..++..+..++++-+|-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 33444444444455555555555444333222223333344555555444432221122222255666777778877777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
+...+.+. +|..+.. .+.+...|++|+.....+
T Consensus 1020 ~il~e~~s-d~~~av~------ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1020 KILLEYLS-DPEEAVA------LLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHhc-CHHHHHH------HHhhHhHHHHHHHHHHhc
Confidence 77666543 2222222 233334556665554443
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=83.25 E-value=2.7 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
.++..+...|..+-..|++.+|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567778888888888888888888777654
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=83.07 E-value=9.3 Score=36.59 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=60.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINRN---------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
...+..++.-.|||..|++.++.. +++ +-+..+++.+|.+|..+++|.+|++.|..++-.-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 445677888999999999987653 221 2245688999999999999999999999887431111100000
Q ss_pred HHHHH-HhCCCHHHHHHHHHHHHhhCCC
Q psy3014 452 KGKIL-QGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 452 l~~~~-~~~g~~~~A~~~~~~al~~~p~ 478 (570)
...-+ .-.+..++....+--++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 00011 1123445555556666666775
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=82.65 E-value=18 Score=36.04 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
++..-|..+|.+....+++..|.++|.++-.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455678888888888888888888887743
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=82.63 E-value=11 Score=25.95 Aligned_cols=31 Identities=35% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
..+..+...|.-+-..|++++|+.+|+++++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4566677778888888888888888877664
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=82.51 E-value=5.2 Score=40.92 Aligned_cols=101 Identities=27% Similarity=0.504 Sum_probs=66.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHH--hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPD----DPKYYSNRAACYTK--LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
-|..++..+++..|.--|..++.+-|. ......+.+.|+.. .|+|..++....-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 355566666777776666666666553 23344555555554 456777777777777777777777777777777
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
..+.++-|++...-.....|++..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 777777777777667777777755554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=82.24 E-value=3.8 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
...|..+-..|.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555555555555555444
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=82.20 E-value=22 Score=31.81 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
......+|..|+..|++++|+.+|+.+...... ...++..+..|+...|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344556788888888888888888887554322 1345666777777777777766655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.06 E-value=2.3 Score=40.51 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=47.3
Q ss_pred hhchhHHHhcccCHHHHHHHHhchhccC---------CCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 48 FSNRSAAFAKEGNYEKALEDAEKTISLK---------PDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 48 ~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
..++.+++.-+|+|..|++.++.. .++ +-+...++..|-+|+.+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999998763 222 23567789999999999999999999998764
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=81.26 E-value=20 Score=32.14 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHc
Q psy3014 261 KNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKM 331 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~ 331 (570)
..-...+.++++|+...... ..+...+|..|+..|++++|+.+|+.+....... .....++..+..|+...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34445566666666554321 3455788999999999999999999997543322 34467788888999999
Q ss_pred CCHHHHHHHHHHHh
Q psy3014 332 EDWKNAKVYFEKSM 345 (570)
Q Consensus 332 ~~~~~A~~~~~~~~ 345 (570)
|+.+..+.+.-+.+
T Consensus 232 ~~~~~~l~~~leLl 245 (247)
T PF11817_consen 232 GDVEDYLTTSLELL 245 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99988877665443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=80.69 E-value=40 Score=29.85 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH-HhcCHHHHHHHHHHHh
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYF-ERKEYDQCIEQYIQKI 308 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~l 308 (570)
-+..++.+....|+|++.+.+..+++..+|.- .+-...++.+|- ..|....+...+....
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 35678888999999999999999999987753 333444454443 2344445555544443
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=80.58 E-value=3.1 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSE 36 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~ 36 (570)
+.-.|..+-..+.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344444455555555555555555543
|
|
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.51 E-value=20 Score=31.99 Aligned_cols=121 Identities=14% Similarity=0.082 Sum_probs=86.7
Q ss_pred CChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cChHHHHHHHHHHHhcC
Q psy3014 373 IDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL--AAFDLGLKDCETCLKLD 442 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~ 442 (570)
.+|....+|...-.+... ..-++.-+.++..+++-+|.+...|..+-.++... .++..-+...++.++.+
T Consensus 61 ~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~D 140 (328)
T COG5536 61 KNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSD 140 (328)
T ss_pred hCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccc
Confidence 566666666554444333 22356667888999999999999999988887765 66778888889999999
Q ss_pred CCCHHHHHHHHHHH------HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 443 PKFLKGWIRKGKIL------QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 443 p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
|.+...|...-.++ ..-..+..-.++-..++..|+-|..+|.+.......+
T Consensus 141 srNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 141 SRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred ccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 99887776544444 3334455557777788899999999998874444333
|
|
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.47 E-value=3.8 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIK 39 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 39 (570)
...+..+...|...-..|+|++|+.+|.++|+
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567778888888888888888888877764
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=80.30 E-value=28 Score=27.71 Aligned_cols=119 Identities=10% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...+.....+.+++.++. .++.++..+..+..++.+.+ ..+.+..+.. .
T Consensus 18 ~~~~~~~~l~~yLe~~~~--------------------------~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~ 66 (140)
T smart00299 18 EKRNLLEELIPYLESALK--------------------------LNSENPALQTKLIELYAKYD-PQKEIERLDN----K 66 (140)
T ss_pred HhCCcHHHHHHHHHHHHc--------------------------cCccchhHHHHHHHHHHHHC-HHHHHHHHHh----c
Confidence 344566666677766666 44555666666666666543 3445555542 1
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 488 (570)
++... .-..+.++.+.+-++++...+.+. ..+..+.. .+....++++.|++++.+ +++++.|..+..
T Consensus 67 ~~~yd-~~~~~~~c~~~~l~~~~~~l~~k~----~~~~~Al~---~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~ 133 (140)
T smart00299 67 SNHYD-IEKVGKLCEKAKLYEEAVELYKKD----GNFKDAIV---TLIEHLGNYEKAIEYFVK-----QNNPELWAEVLK 133 (140)
T ss_pred cccCC-HHHHHHHHHHcCcHHHHHHHHHhh----cCHHHHHH---HHHHcccCHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 11111 112333334445555555555442 11111111 111223677777777665 346667766665
Q ss_pred HHH
Q psy3014 489 CSI 491 (570)
Q Consensus 489 ~~~ 491 (570)
.+.
T Consensus 134 ~~l 136 (140)
T smart00299 134 ALL 136 (140)
T ss_pred HHH
Confidence 443
|
|
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=7 Score=34.04 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=67.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHhcCHH-HH-HHHHHHHh-hcccChhHHHH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDIT------------FQNNIAAVYFERKEYD-QC-IEQYIQKI-ENRADFKLIAK 319 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~-~A-~~~~~~~l-~~~~~~~~~~~ 319 (570)
...+..|+++.|+....-+|+.+-.-|+ -...-+......|+.- -. ...+..+. ..+-.+...+.
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 3456789999999999999998532221 1122333334444421 11 12222222 12222334467
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 320 ALQRIGNCYK---------KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 320 ~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.+...|..+. ..++...|+.++++++..++...+...+.+++..+.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Confidence 7777788773 456888999999999998888777766666665544
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=80.11 E-value=33 Score=28.49 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 459 MQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
..+.+.|.++--+|-+++ ++.+..++.+++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH
Confidence 345555555555555442 445555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 570 | ||||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-42 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 2e-33 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 7e-33 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 4e-09 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 4e-31 | ||
| 1elr_A | 131 | Crystal Structure Of The Tpr2a Domain Of Hop In Com | 3e-26 | ||
| 3esk_A | 129 | Structure Of Hop Tpr2a Domain In Complex With The N | 3e-26 | ||
| 4gcn_A | 127 | N-Terminal Domain Of Stress-Induced Protein-1 (Sti- | 1e-25 | ||
| 3fwv_A | 128 | Crystal Structure Of A Redesigned Tpr Protein, T-Mo | 2e-25 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 3e-19 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 2e-14 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 2e-14 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-10 | ||
| 2llw_A | 71 | Solution Structure Of The Yeast Sti1 Dp2 Domain Len | 5e-13 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 5e-13 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 2e-09 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 7e-12 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 1e-11 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 2e-11 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-11 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-10 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-08 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-09 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 3e-11 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 5e-11 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 2e-10 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 1e-06 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 4e-06 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 2e-10 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 1e-06 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 4e-06 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 5e-09 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-08 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 4e-07 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 4e-08 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 6e-07 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 3e-07 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 6e-07 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-07 | ||
| 2l6j_A | 111 | Tah1 Complexed By Meevd Length = 111 | 1e-06 | ||
| 3u4t_A | 272 | Crystal Structure Of The C-Terminal Part Of The Tpr | 3e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-06 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 1e-04 | ||
| 1qz2_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Compl | 2e-04 | ||
| 2llv_A | 71 | Solution Structure Of The Yeast Sti1 Dp1 Domain Len | 4e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 4e-04 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 5e-04 | ||
| 1kt1_A | 457 | Structure Of The Large Fkbp-Like Protein, Fkbp51, I | 5e-04 | ||
| 1kt0_A | 457 | Structure Of The Large Fkbp-like Protein, Fkbp51, I | 8e-04 |
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131 | Back alignment and structure |
|
| >pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129 | Back alignment and structure |
|
| >pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127 | Back alignment and structure |
|
| >pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2LLW|A Chain A, Solution Structure Of The Yeast Sti1 Dp2 Domain Length = 71 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111 | Back alignment and structure |
|
| >pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga Hutchinsonii. Northeast Structural Genomics Consortium Target Chr11b. Length = 272 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 | Back alignment and structure |
|
| >pdb|2LLV|A Chain A, Solution Structure Of The Yeast Sti1 Dp1 Domain Length = 71 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 7e-90
Identities = 83/523 (15%), Positives = 186/523 (35%), Gaps = 38/523 (7%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LKDKGN + + +AI+ Y+ A++L + + +SN SA + G+ +K +E + K +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEE-GLKLDPNNEQMKEAIKDVRNQEMNDMNR 132
LKPD+ K R+ SA LG++ +++ L D N+ ++ ++ N++ +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLK 127
Query: 133 G--DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
+ P R + PS M +T D
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250
++ G++ ++ D + ++ + +++ +++ A
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLF-------EEQLDKNNEDEKLKEKLAISL 240
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
+ G + K + A KA+E P + +A + +R + + + + ++
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS--------MSEHRTPEIRTLISEMEK 362
++ + G ++++ A F+K+ + + ++ +
Sbjct: 300 DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ P E L + A+K+Y AI Y A
Sbjct: 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Query: 423 TKLAA---------FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
K F E KLDP+ + I ++ + +AI +E++
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 474 ELDASNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQILRD 516
+L + E ++ +V++R DP + + +++
Sbjct: 477 DLARTMEEKLQAITFA------EAAKVQQRIRSDPVLAKKIQE 513
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 41/272 (15%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A K+ GN+ ++ K +++A+ +YN A+E D F +N++A Y + + +E +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNA------------------KVYFEKSMSEH 348
+E + D+ +K L R + + + + +A + E+++++
Sbjct: 65 ALELKPDY---SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121
Query: 349 RTPEIRTLISEMEK------KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
+++ +++ ++ + K D + + F K Y
Sbjct: 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD 181
Query: 403 EAINRNPDDPKYYSNRA-----------ACYTK-LAAFDLGLKDCETCLKLDPKFLKGWI 450
E+ + + SN +TK F+ L KL K
Sbjct: 182 ESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241
Query: 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
G A + +KA+EL +
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELF-PRVNS 272
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 9e-22
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD 434
A K++GN+ F+N KY DA+K Y A+ DP +YSN +ACY + ++
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM 61
Query: 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK-ALELDASNAEAVEGY 486
L+L P + K +R+ +G+ + + A+ +L D ++A
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 6e-76
Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 5/240 (2%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A KEK GN+ YK + F+EA+ HYNKA E DIT+ NN AA +E+ EY+ I
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLND 63
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+E RAD+K+I+K+ RIGN Y K+ D K Y++KS++EHRT +I T + EK
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
++K+ E +AY++P KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
KL +F + DC ++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 184 AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-26
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ +G +++ A++AY+E IK + +SNR+AA AK ++ +A+ D K I
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P++ + Y RK +A + Y ++ T + D
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 6e-21
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD 434
A++ K GN+ +K ++ +A++ Y +A + D Y +NRAA + ++ +
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 435 CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ + + K + + +K +E +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K +GN +A F EAIE Y++A +L + +NR+AA ++G YE A+ +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ Y + + +G + ++ ++ +
Sbjct: 67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 5e-17
Identities = 15/96 (15%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + N + ++ ++ + + ++ A++ + I P
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +GYS + +AL+ L + E+I+ + ++ DPN
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
K + + N + + I+ + + K N EK L+ AE +
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIEYY-QKSLTEHRTADILTKLRNAEKELKKAEAEAYV 134
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIK 120
P+ + +G + ++ Y E +K P + EAI
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194
Query: 121 D 121
D
Sbjct: 195 D 195
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 16/80 (20%), Positives = 30/80 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ A + +F EAI ++AI+ D + ++ A Y ALE + +
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Query: 77 DWPKGYSRKGSALSYLGRYK 96
+ G S + Y +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 7e-62
Identities = 89/487 (18%), Positives = 163/487 (33%), Gaps = 68/487 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN A NF EAI+ Y AI+LD + +SN SA + G+ EK +E K +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
+KPD K R+ SA LG + +++ + E + + +N
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML---ERNLNKQAMK 144
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD--PRMMTTL 191
NL D Q+ S+ S + + L
Sbjct: 145 VLNENLSKDEGRGSQV--------LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEK 251
S L S+T + + + +A
Sbjct: 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSL---------LSANTVDDPLRENAALALC 247
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + K N +A +++ PT ++ +A +++ + + + + ++
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
++ G Y ++D+KNAK F+K+ + E
Sbjct: 307 PEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQ-----------------SLNPENVYP 346
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
YI L+K GK+ ++ + E + P P+ + A T FD
Sbjct: 347 YIQ---------LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQ----------------GMQQQSKAIDAYEKALEL 475
+K + +L+ K + G ++ ++ + AI KA EL
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Query: 476 DASNAEA 482
D + +A
Sbjct: 458 DPRSEQA 464
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 45/263 (17%), Positives = 80/263 (30%), Gaps = 26/263 (9%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
Q A + K GN + KNF EA+ +Y A+E DP + F +NI+A Y + ++ I
Sbjct: 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI-------R 354
E + +E + D +KAL R + + + ++ +A R
Sbjct: 80 EFTTKALEIKPDH---SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136
Query: 355 TLISEMEKKIKEEEKKAY-------IDPVKAEEAKE------RGNELFKNGKYADAVKEY 401
L + K + E K + + + Y A
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 402 TEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459
++A+ R D Y + L L G
Sbjct: 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256
Query: 460 QQQSKAIDAYEKALELDASNAEA 482
A ++++ L +
Sbjct: 257 NNLLDAQVLLQESINLH-PTPNS 278
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ +++AY A + K RGN F + +A+K Y AI +P++P +YSN +ACY
Sbjct: 15 GLSPSQRQAY-----AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++ L++ P K +R+ + + + A+ + +
Sbjct: 70 ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGAS 129
Query: 483 VEGY 486
+E
Sbjct: 130 IEPM 133
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKE----------------GN 60
+F AI+ Y A +L+ + K
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
+ A++ K L P + + + E+I +E+ L ++ +A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 34/286 (11%), Positives = 72/286 (25%), Gaps = 49/286 (17%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317
+ + P+ N +F K +++ I+ Y IE +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE--- 58
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
I CY D + + K++ +IK + KA +
Sbjct: 59 PVFYSNISACYISTGDLEKVIEFTTKAL-----------------EIKPDHSKALLR--- 98
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
R + G + DA+ + + + + + +K
Sbjct: 99 ------RASANESLGNFTDAMFDLSVLSL----NGDFDGASIEPMLERNLNKQAMKVLNE 148
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA--VEGYRQCSIAVSS 495
L D R ++L + ++ LE+ + N + Y S A+
Sbjct: 149 NLSKDEG------RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202
Query: 496 NPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPE 541
V L + + + +
Sbjct: 203 LY----SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 7e-11
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYS----NRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
G + + + + +P + Y+ NR + F+ +K + ++LDP
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ K I+ KALE+ +++A
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 54/186 (29%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAV----------------YFERKE 296
+ +F+ A+ Y+ A + I + + ++
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
Query: 297 YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356
++ I+ + E +A + +ME A FE S
Sbjct: 444 FNAAIKLLTKACELDPRS---EQAKIGLAQLKLQMEKIDEAIELFEDSAI---------- 490
Query: 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
+ E + +A+A + + + +P
Sbjct: 491 ----------------LARTMDE--------KLQATTFAEA-AKIQKRLRADPIISAKME 525
Query: 417 NRAACY 422
A Y
Sbjct: 526 LTLARY 531
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 6e-51
Identities = 64/123 (52%), Positives = 83/123 (67%)
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ AYI+P A+E K +GNE FK G Y A++ Y EA+ R+P++ YSNRAAC TKL
Sbjct: 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM 61
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
F L DC+TC++LD KF+KG+IRK L M++ SKA AYE AL++D SN EA EG
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
Query: 487 RQC 489
R C
Sbjct: 122 RNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-41
Identities = 37/110 (33%), Positives = 66/110 (60%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+KGN + ++ A+ Y+EA+K D N IL+SNR+A K +++AL+D + I
Sbjct: 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
L + KGY RK + L + + ++ YE+ L++DP+NE+ +E +++
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-17
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++EK GNE +KK ++ A+ HYN+AV+ DP + +N AA + E+ + ++
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEK 362
I + F K R C M +W A+ +E ++ + E R + +
Sbjct: 73 CIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 1e-50
Identities = 65/128 (50%), Positives = 88/128 (68%)
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
++++P A K +GNE F+ G Y A+K YTEAI RNP D K YSNRAACYTK
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
L F L LKDCE C++L+P F+KG+ RK L+ M+ +KA+D Y+KAL+LD+S EA +
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 485 GYRQCSIA 492
GY++C +A
Sbjct: 123 GYQRCMMA 130
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-40
Identities = 37/115 (32%), Positives = 70/115 (60%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+K+KGN Q ++ +A++ Y+EAIK + + L+SNR+A + K ++ AL+D E+ I
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 128
L+P + KGY+RK +AL + Y +++ Y++ L LD + ++ + + + N
Sbjct: 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-17
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A K GNE ++K ++ +A+ HY +A++ +P D +N AA Y + E+ ++ +
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
I+ F K R + M+D+ A ++K
Sbjct: 76 CIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQK 109
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 9e-48
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 11/176 (6%)
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+E A +AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
+ L D ++LD K++KG+ R+ + + A+ YE +++ + +A Y
Sbjct: 62 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 487 RQCSIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEI 542
++C+ + V+++A + I D R +++ + + + D P++
Sbjct: 122 QECN-------KIVKQKAFE----RAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 166
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-38
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++ N+ +
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-NKIVKQKAFE 134
Query: 134 DPFANLFSDPNIFVQLQLDP 153
A ++ L ++
Sbjct: 135 RAIAGDEHKRSVVDSLDIES 154
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 24/147 (16%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
++ + A++ K N+ +K K++E A+ Y++A+E +P++ + N + Y +
Sbjct: 2 DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIR 354
Y + + IE + K R + ++ A +E + + + +
Sbjct: 62 CYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEA 381
E K +K++ + I + + +
Sbjct: 119 MKYQECNKIVKQKAFERAIAGDEHKRS 145
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 2e-47
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 3/176 (1%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ + L DC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV--- 493
L+LD + +K G+ M+ +AI ++A L ++ +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKL 549
+R + E+ L +++ R H + I ++ +
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 7e-30
Identities = 28/210 (13%), Positives = 69/210 (32%), Gaps = 19/210 (9%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN-----EQMKEAIKDVRNQEMN 128
L K + G + Y E+I+ + L + + A++ + + N
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126
Query: 129 DMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMM 188
+ ++ + +L+ + +E+++ D +
Sbjct: 127 SIEE--------------RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIR 172
Query: 189 TTLSVLLGVNMSSTMGDGDAEEMDVDPQPP 218
+ + + + + +
Sbjct: 173 AQQACIEAKHDKYMADMDELFSQVDEKRKK 202
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 2e-21
Identities = 34/200 (17%), Positives = 76/200 (38%), Gaps = 6/200 (3%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
SA++ KE GN + + + EA A Y +A+ +P + N A Y + ++ +Q +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKI 364
+ +E KA +G C +ME + A +++ S +I
Sbjct: 63 RALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 365 KEEEKKAYIDPVKAEEAKERGNEL--FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
++++ I+ + + E + L + ++E + DD + +A
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179
Query: 423 TKLAAFDLGLKDCETCLKLD 442
K + + + + +
Sbjct: 180 AKHDKYMADMDELFSQVDEK 199
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-46
Identities = 65/116 (56%), Positives = 90/116 (77%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++++ +
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 4e-44
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+ E KE+GN+ G DA++ Y+EAI +P + YSNR+A Y K + +D
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+ L P + KG+ RK L+ + + +A YE+ L+ +A+N + EG +
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-17
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
+ KE GN+A N ++AL Y++A++ DP + +N +A Y ++ +Y + E +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKK 363
++ + D+ K R + + ++ AK +E+ + E P+++ + ME +
Sbjct: 64 TVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 9e-43
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP---DDPKYYSNRAACY 422
E + A E+ ++ GNELFK G Y A+ YT+A+ + D + NRAAC+
Sbjct: 16 PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
KL +D + ++ D +K R+ + L+ + + +A+ ++ + L+ N
Sbjct: 76 LKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
Query: 483 VEGYRQCSIAVS 494
E R S S
Sbjct: 136 QEALRNISGPSS 147
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-35
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILFSNRSAAFAKEGNYEKALEDAEK 70
L+ +GN + ++ A+ AY++A+ LD T +L NR+A K +Y+KA +A K
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
I K R+ AL LGR +++ + + L+P N+ +EA++++
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 5e-19
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 7/146 (4%)
Query: 223 APSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT--- 279
S P PE + T S ++ ++ GNE +K ++ ALA Y +A+ D T
Sbjct: 4 GSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD 63
Query: 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339
N AA + + ++YD+ + + IE KAL R +K+ A +
Sbjct: 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVL 120
Query: 340 YFEKSMS-EHRTPEIRTLISEMEKKI 364
++ +S E + + + +
Sbjct: 121 DLQRCVSLEPKNKVFQEALRNISGPS 146
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-42
Identities = 42/125 (33%), Positives = 63/125 (50%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
D +AE K GNE K + AV Y +AI NP + Y+ NRAA Y+KL + +
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
+DCE + +DP + K + R G L + + +A+ Y+KALELD N + +
Sbjct: 67 QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Query: 493 VSSNP 497
+ P
Sbjct: 127 LREAP 131
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 9e-41
Identities = 44/112 (39%), Positives = 71/112 (63%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK +GN ++ NF A+ Y +AI+L+ N + F NR+AA++K GNY A++D E+ I
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+ P + K Y R G ALS L ++ E+++ Y++ L+LDP+NE K +K +
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 4e-18
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF 292
ED A++ K GNE K +NFE A+ Y KA+E +P + + N AA Y
Sbjct: 4 GSEEDSAE------AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS 57
Query: 293 ERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTP 351
+ Y ++ + I + +KA R+G + A Y++K++ +
Sbjct: 58 KLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114
Query: 352 EIRTLISEMEKKIKE 366
++ + E K++E
Sbjct: 115 TYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 29/154 (18%)
Query: 272 KAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKM 331
E D + + + ++ + Y + IE A Y K+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKL 59
Query: 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391
++ A E+++ I KAY G L
Sbjct: 60 GNYAGAVQDCERAI-----------------CIDPAYSKAYGR---------MGLALSSL 93
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
K+ +AV Y +A+ +PD+ Y SN KL
Sbjct: 94 NKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-42
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
++ A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ +
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L DC L+LD + +K G+ M+ +AI ++A L
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-34
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN-EQMKEAIK 120
L K + G + Y E+I+ + L + I
Sbjct: 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 119
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE 302
+ SA++ KE GN + + + EA A Y +A+ +P + N A Y + ++ +Q +
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 64
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS------EHRTPEIRTL 356
+ +E KA +G C +ME + A +++ S + +I +
Sbjct: 65 DCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 121
Query: 357 ISEMEKKIKEEEKKA 371
+ +KK ++
Sbjct: 122 LRIAKKKRWNSIEER 136
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-42
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435
+KAEEA+ G E F + +AVK YTE I R P+D + YSNRAA KL +F + DC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ DP F++ +IRK +++ + A++ + A DA
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-34
Identities = 27/105 (25%), Positives = 50/105 (47%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ +G +++ A++AY+E IK + +SNR+AA AK ++ +A+ D K I
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
P++ + Y RK +A + Y ++ T + D A
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 8e-19
Identities = 19/127 (14%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
A++ + G E + K ++ A+ Y + ++ P D +N AA + + + I
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
+ IE +F +A R ++++ +A + + ++ + E+++
Sbjct: 63 KAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119
Query: 366 EEEKKAY 372
+ ++ +
Sbjct: 120 KASQQRF 126
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP 79
A + +F EAI ++AI+ D + ++ A Y ALE + + +
Sbjct: 47 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106
Query: 80 KGYSRKG 86
G S +
Sbjct: 107 NGSSARE 113
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-41
Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 14/254 (5%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
+ +K ELG + +AL+ ++ AV+ DP + A V+
Sbjct: 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG 74
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
+ + + I+ + DF A + G+ K A+ F+K +
Sbjct: 75 KSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLK--------- 122
Query: 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415
S + ++E + I + + + + F +G Y A+ + + D +
Sbjct: 123 --SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180
Query: 416 SNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
RA C+ K + D + KL + + + + + ++ + L+L
Sbjct: 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240
Query: 476 DASNAEAVEGYRQC 489
D + Y+Q
Sbjct: 241 DQDHKRCFAHYKQV 254
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 8e-26
Identities = 39/285 (13%), Positives = 103/285 (36%), Gaps = 40/285 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
K+ +A++ A + + I+ +Y++ +++ + + + ++
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 310 -------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ K + K ++ + + +A +E M + E
Sbjct: 243 DHKRCFAHYKQVKKLNKLIES-AEELIRDGRYTDATSKYESVM-------------KTEP 288
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
I E ++ + + K+ K +A++ +E + PD+ +RA Y
Sbjct: 289 SIAEYTVRSK---------ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+D ++D ET + + + K + ++Q K ++ +A E
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Query: 483 VEGYRQCSI------AVSSNPEEVRKRAMGD-PEVQQILRDPAMR 520
++ YR+ ++ + ++ ++ D +++L DP MR
Sbjct: 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V + G L A +A+ + A+ D N+I + R+ F G + AL D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
K I LK D+ ++G L G+ E+ +++ LK +P+ + KEA + +
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKE 58
V +++ L + ++ + +A Y +K + + F+K+
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+A+ + + ++PD + A Y E+I YE + + N++Q++E
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368
Query: 119 IKDVRNQ 125
++ +
Sbjct: 369 LEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E+ L+ + A + ++ AI + +++ + L R+ F KEG KA+ D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
LK D + + + + LG ++ S+S E LKLD ++++ K V+
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 5e-19
Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 19/205 (9%)
Query: 231 KPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NN 286
+ + K E E + + +A + Y ++ +P+ +
Sbjct: 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300
Query: 287 IAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
I + + ++ + I + ++ D AL+ Y E + A +E +
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDN---VNALKDRAEAYLIEEMYDEAIQDYETAQE 357
Query: 347 EH-RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE-A 404
+ +IR + + ++ +K+ +K+ Y + + +N K + +K Y + A
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDY----------YKILGVKRNAKKQEIIKAYRKLA 407
Query: 405 INRNPDDPKYYSNRAACYTKLAAFD 429
+ +PD+ + + K
Sbjct: 408 LQWHPDNFQNEEEKKKAEKKFIDIA 432
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +AI A KL N F S + + G++E +L + + + L
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Query: 77 DWPKGYS------------RKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D + ++ L GRY ++ S YE +K +P+ +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 20/110 (18%), Positives = 46/110 (41%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDA 68
Y V + + + +EAI SE ++++ N +R+ A+ E Y++A++D
Sbjct: 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352
Query: 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
E + + A L + ++ G+K + +++ +A
Sbjct: 353 ETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ L A+ ++ I+L R K+G ++A +D +K + P
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 77 DWP---------------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + G Y +I+ ++ L++ + +
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 25/88 (28%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ E Y +++ D EK + G L G+ +++S + +
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEK-----------HLELGKKLLAAGQLADALSQFHAAVD 54
Query: 108 LDPNN--------------EQMKEAIKD 121
DP+N + K A+ D
Sbjct: 55 GDPDNYIAYYRRATVFLAMGKSKAALPD 82
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 2e-41
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 15/160 (9%)
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
++ ++++ K GN +Y+ A+ YT+A++ P +P Y SNRAA Y+ +
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV--EGYR 487
+D E +DPK+ K W R G M A +AYEK +E + + G
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
Query: 488 QC-------SIAVSSNPEEVRK------RAMGDPEVQQIL 514
+ ++V A G P++ +
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSLA 162
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 5e-40
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK +GNAA+ + +AI+ Y++A+ + N I SNR+AA++ G +EKA EDAE
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--EQMKEAIKDVRNQEMNDMN 131
+ P + K +SR G A + YK + YE+G++ + N + MK ++ + +++ + N
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK-RKIEEAN 132
Query: 132 RGD 134
RG
Sbjct: 133 RGA 135
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
+ K K GN A +K + +A+ Y +A+ P + + +N AA Y ++++ E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS---EHRTPEIRTLISEMEKK 363
+ +KA R+G M D+K AK +EK + + ++ + ++K
Sbjct: 71 ATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127
Query: 364 IKEEEKKAYIDPVKAEEA 381
I+E + A ++A
Sbjct: 128 IEEANRGAEPPADDVDDA 145
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-40
Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 18/241 (7%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
ELG + +AL+ ++ AV+ DP + A V+ + + + I
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE--EE 368
+ DF A + G+ K A+ F+K + + +E E
Sbjct: 67 KMDF---TAARLQRGHLLLKQGKLDEAEDDFKK-------------VLKSNPSEQEEKEA 110
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428
+ + + + + + + F Y A+ + + D + RA C+ K
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 170
Query: 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ D + KL + + + + + ++ + L+LD + Y+Q
Sbjct: 171 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 230
Query: 489 C 489
Sbjct: 231 V 231
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 43/275 (15%), Positives = 102/275 (37%), Gaps = 28/275 (10%)
Query: 221 KKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280
KK P+++ + + L ++ + +A+ ++ A+ +K +E D
Sbjct: 95 KKVLKSNPSEQEEKEAESQLVKAD-EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153
Query: 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
+ A + + E + I + ++D +A +I Y ++ D + +
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSE 210
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI---DPVKAEEAKERGNELFKNGKYADA 397
+ + K+ ++ K+ + K + E EL ++G+Y DA
Sbjct: 211 VRECL-----------------KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253
Query: 398 VKEYTEAINRNPDDPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453
+Y + P +Y C++K ++ C L+++P + +
Sbjct: 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313
Query: 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ + +AI YE A E + ++ + EG +
Sbjct: 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
E+ E G +L G+ ADA+ ++ A++ +PD+ Y RA + + L D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L F +++G +L + +A D ++K L+ + S E
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V + G L A +A+ + A+ D N+I + R+ F G + AL D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
K I+LK D+ ++G L G+ E+ +++ LK +P+ ++ KEA + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD 118
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLD----GTNHILFSNRSAAFAKE 58
V +++ L + ++ + +A Y +K + F+K+
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+A+ + + ++PD + A Y E+I YE + + N++Q++E
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345
Query: 119 IKDV 122
++
Sbjct: 346 LEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 34/222 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
K+ +A++ A + + I+ +Y++ +++ + + + ++
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 310 -------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ K + K ++ + + +A +E M + E
Sbjct: 220 DHKRCFAHYKQVKKLNKLIES-AEELIRDGRYTDATSKYESVM-------------KTEP 265
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ E ++ + + K+ K +A++ +E + PD+ +RA Y
Sbjct: 266 SVAEYTVRSK---------ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
+D ++D E + + + K + + +QS+
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR-LLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 5e-20
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
E+ L+ + A ++ AI + +++ + L R+ F KEG KA+ D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126
LK D + + + + LG ++ S+S E LKLD ++++ K V+
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +AI A KL N F S + + G++E +L + + + L
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 77 DWPKGYS------------RKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D + ++ L GRY ++ S YE +K +P+ +
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY 270
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA---------------AFAKEGNY 61
+G+ L+ EA + + + +K + + S +Y
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
A+ +K + + + + G +++IS + KL +N
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 17/90 (18%), Positives = 37/90 (41%)
Query: 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALED 67
Y V + + + +EAI SE ++++ N +R+ A+ E Y++A++D
Sbjct: 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKE 97
E + + A L + ++
Sbjct: 329 YEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-38
Identities = 65/127 (51%), Positives = 91/127 (71%), Gaps = 4/127 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
IE NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ + EK
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 363 KIKEEEK 369
+KE+E+
Sbjct: 124 ILKEQER 130
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+ GN A + +F A++ Y +A +LD TN +N++A + ++G+Y K E EK I
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 74 LKPDWP-------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK---EAIKDVR 123
+ + K Y+R G++ +YK++I Y + L + +K +A K ++
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126
Query: 124 NQE 126
QE
Sbjct: 127 EQE 129
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-29
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+A + KE GN+ +K + A+K Y +A +P + Y +N+AA Y + ++ + CE
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 437 TCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+++ + K + R G ++ AI Y K+L + ++ +Q
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 4e-35
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+ E+ KE+GN LFK G Y +AV Y + I P +P YSN+A KL + ++ C+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484
L+ IR + ++ A+ + + + E +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-28
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K++GN+ + + EA+ Y + I N + +SN++ A K G Y +A++ ++ +
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK-LDPNNEQMKEA 118
R L + ++ + + + +D E +
Sbjct: 67 YTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-15
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
+K+KE GN +K+ + EA+ Y++ + P + +N A + EY Q I+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 306 QKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350
Q + + +K R+ + + V ++ +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-35
Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 4/120 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A EK+LGN AYK+K+FE+A HY+KA+E DP++ITF NN AAVYFE K++ +C++ +
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 307 KIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+E RAD+KLIAKA+ R GN ++K D A +F +S+SE R PE+ + E+EK
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEK 127
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-30
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
KD GNAA + +F +A Y +AI+LD +N ++N++A + +E + + ++ EK +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 74 LKPDWP-------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+ + K SR G+A ++ + L + E +K+
Sbjct: 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 9e-28
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
A K+ GN +K + A Y +AI +P + +Y+N+AA Y + F ++
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 434 DCETCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
CE +++ + K R G Q S A+ + ++L E V+
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKV 122
Query: 487 RQC 489
++
Sbjct: 123 KEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
A K+ ++EKA +K I L P Y+ K + ++ E + E+ +++
Sbjct: 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76
Query: 114 QMKEAI 119
+ I
Sbjct: 77 ADYKLI 82
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
EL + Y+ +FE A H + +P + +++++F+ + D+ I+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+A +GN YK+ + A ++ ++
Sbjct: 64 PLL---AEAYSNLGNVYKERGQLQEAIEHYRHALR------------------------- 95
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + L G AV+ Y A+ NPD S+ L +
Sbjct: 96 -LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
++ P F W G + + AI +EKA+ LD + +A
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-32
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + ++ + + + A++ +P +N+ VY ER + + IE Y + +
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
DF + D + A + ++
Sbjct: 99 DF---IDGYINLAAALVAAGDMEGAVQAYVSALQ-------------------------- 129
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+P + GN L G+ +A Y +AI P+ +SN + L +
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
E + LDP FL +I G +L+ + +A+ AY +AL L ++A
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 39/230 (16%), Positives = 83/230 (36%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + A+ H+ KAV DP + N+ V E + +D+ + Y++ +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A + Y + A + +++ +++ AY
Sbjct: 235 NH---AVVHGNLACVYYEQGLIDLAIDTYRRAI-----------------ELQPHFPDAY 274
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ N L + G A+A Y A+ P +N A + + +
Sbjct: 275 CN---------LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L++ P+F +LQ + +A+ Y++A+ + + A+A
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 41/208 (19%), Positives = 78/208 (37%), Gaps = 29/208 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN + + F+ A+A Y +A+ P N+A VY+E+ D I+ Y + IE +
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
F A + N K+ A+ + ++ ++ +
Sbjct: 269 HF---PDAYCNLANALKEKGSVAEAEDCYNTAL-----------------RLCPTHADSL 308
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ N + G +AV+ Y +A+ P+ +SN A+ + L
Sbjct: 309 NN---------LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQ 460
+ +++ P F + G L+ MQ
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 22/101 (21%), Positives = 41/101 (40%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
L + Q + + AIK + +SN + + G ++A+E +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
LKPD+ GY +AL G + ++ Y L+ +P+
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-18
Identities = 23/96 (23%), Positives = 49/96 (51%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
NA + + EA + Y+ A++L T+ +N + ++GN E+A+ K + + P
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ +S S L G+ +E++ Y+E +++ P
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 6e-18
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + EAIE Y A++L + N +AA G+ E A++ + P
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D S G+ L LGR +E+ + Y + ++ PN
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-17
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
A + A + A++AY A++ + + + S+ G E+A K I +P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ +S G + G +I +E+ + LDPN
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN EA Y +AI+ + +SN F +G A+ EK ++L P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ Y G+ L + +++ Y L L PN+
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 18/97 (18%), Positives = 38/97 (39%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
+ + QA +F A + + + N + S+ + +++ + I
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + YS G+ G+ +E+I Y L+L P+
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 17/96 (17%), Positives = 36/96 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ AI+ Y AI+L + N + A ++G+ +A + + L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G +E++ Y + L++ P
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 17/96 (17%), Positives = 34/96 (35%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G AI + +A+ LD + N + +++A+ + +SL P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G +I TY ++L P+
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN +A F A+ AY A+ L + ++ N + + ++G + A++ + I L+P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+P Y +AL G E+ Y L+L P + ++EA++
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
N + N EA+ Y +A+++ SN ++ ++G ++AL ++ I + P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 77 DWPKGYSRKGSALSYLG 93
+ YS G+ L +
Sbjct: 371 TFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Query: 313 DFKLIAKALQRIGNCYKKMED 333
F A A +GN K+M+D
Sbjct: 371 TF---ADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 9/68 (13%), Positives = 22/68 (32%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
A + F+ + C + +P + I ++ ++ A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 475 LDASNAEA 482
+ AEA
Sbjct: 62 QNPLLAEA 69
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-33
Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 35/236 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQ---CIEQYIQKIE 309
+ +K N+ EA+ +NK N A Y+E +YD IE Y K+
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369
+ + G K A ++ ++
Sbjct: 69 ATKAK---SADFEYYGKILMKKGQDSLAIQQYQAAVD----------------------- 102
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
D + + + G+ + G + A++ + I DPK + Y +
Sbjct: 103 ---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK---AIDAYEKALELDASNAEA 482
L+L P G++ + + +K A YEK +E+ A
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 43/244 (17%)
Query: 253 LGNEAYKKKNFEEALA---HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
Y+ ++ A Y V + ++ + I+QY ++
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369
+IG+ + ++ A Y EK + + +
Sbjct: 103 RDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQI-----------------RPTTTDP 142
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL---A 426
K + + G + N +Y A + + + P+ Y RA
Sbjct: 143 KVFYE---------LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 427 AFDLGLKDCETCLKLDPK--------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
L E +++ ++ + + KA A++ L LD +
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253
Query: 479 NAEA 482
N +A
Sbjct: 254 NKKA 257
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-24
Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 26/198 (13%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
A F+ Y + IE + + + + R CY ++ + A+ E
Sbjct: 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIET- 62
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
K+ K+ + + G L K G+ + A+++Y A
Sbjct: 63 ---------------YFSKVN-------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
++R+ Y + + F L ++ E ++ K + G+ ++ K
Sbjct: 101 VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160
Query: 465 AIDAYEKALELDASNAEA 482
A ++ K LEL +
Sbjct: 161 ADSSFVKVLELKPNIYIG 178
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 6e-19
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ + LFKN YA+A++ + + + + P Y+ RA CY +LA +DL KD ET
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 438 ---CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ + GKIL Q S AI Y+ A++ D + +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 7e-19
Identities = 33/221 (14%), Positives = 56/221 (25%), Gaps = 40/221 (18%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G KK A+ Y AV+ D T + I + ++ + + I+ ++I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
K +G Y +++ A F K +
Sbjct: 140 TD---PKVFYELGQAYYYNKEYVKADSSFVKVLE-------------------------- 170
Query: 373 IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAIN--------RNPDDPKYYSNRAAC 421
+ P R + K A Y + I + + A
Sbjct: 171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
YT + L LDP K L+
Sbjct: 231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 17/122 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE---KTIS 73
+ + NN+ EAIE +++ + +++ R+ + + Y+ A +D E ++
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAI 119
+ G L G+ +I Y+ + D AI
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128
Query: 120 KD 121
+
Sbjct: 129 QY 130
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G ++ AI+ Y A+ D T ++ + F +GN+ A++ EK I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
PK + G A Y Y ++ S++ + L+L PN
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 24/178 (13%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
++G+ Y K NF A+ + K + TD + Y+ KEY + +++ +E
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171
Query: 311 RADFKLIAKALQRIGNCYKKMEDWKN---AKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+ + + AK Y+EK + + + K K+E
Sbjct: 172 KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEKLIE---------VCAPGGAKYKDE 219
Query: 368 EKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
+A + N A + + +P + K
Sbjct: 220 LIEAN---------EYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G+ NF AI+ + I+ T+ +F A+ Y KA K + LKP
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 77 DWPKGYSRKGSALSYLG---RYKESISTYEEGLKLDPNNEQ 114
+ GY + A + + + YE+ +++
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 17 KGNAALQANNF---IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + + IE Y + F K+G A++ + +
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
Y + GS G + +I E+ ++ +
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN----------YEKALE 66
G A +++A ++ + ++L +I + R+ A A + YEK +E
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 67 -DAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
A K + + + ++ + ++ L LDP N++ + +K
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 8/81 (9%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHIL--------FSNRSAAFAKEGNYEKALEDAEKTISL 74
A Y + I++ + + + KA + ++L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 75 KPDWPKGYSRKGSALSYLGRY 95
P K L + +
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESIS---TYEEGL 106
+ K NY +A+E K + K + P Y+R+ L +Y + TY +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 107 KLDPNNEQ 114
Sbjct: 68 NATKAKSA 75
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ ++E+A + KA+E + D N A + E ++ + Y + +E +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A A GN Y E +K AK FEK++
Sbjct: 89 SA---ATAYYGAGNVYVVKEMYKEAKDMFEKALR-------------------------- 119
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ G L K + A+ A+ N +D + C D L
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ DP + G + + KA++ +KA+++ + A
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-26
Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 33/223 (14%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIENRADFKLIAK 319
+ H++ + P + R +Y++ E + + IE + A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED---AI 58
Query: 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379
N + + + A +++K++ ++ AY
Sbjct: 59 PYINFANLLSSVNELERALAFYDKAL-----------------ELDSSAATAYYG----- 96
Query: 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439
GN Y +A + +A+ ++ + KL L L + +
Sbjct: 97 ----AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+L+ + + G L +A+ + E D +A+A
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 8e-24
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 29/210 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
N E ALA Y+KA+E D + T VY ++ Y + + + + +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ +G K+E K A Y ++++ ++ E + +A
Sbjct: 123 EN---GDLFYMLGTVLVKLEQPKLALPYLQRAV-----------------ELNENDTEAR 162
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
G L G +A+ ++ ++P + N Y + L
Sbjct: 163 FQ---------FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
+ + + + P + K +
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+ ++ +A EA+++AI+ + + I + N + + E+AL +K + L
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
Y G+ YKE+ +E+ L+ N EQ K A+
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 4e-18
Identities = 13/98 (13%), Positives = 34/98 (34%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G ++ A+ A++L+ + A EG ++AL P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ G +Y ++++ ++ + + P++
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 8e-18
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + + EA + + +A++ N LF K + AL ++ + L
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ + + G L+ G E++S + + DP + E ++A++
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 5e-17
Identities = 17/96 (17%), Positives = 40/96 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
N N A+ Y +A++LD + + + + Y++A + EK +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+ L L + K ++ + ++L+ N+
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 29 EAIEAYSEAIKLD----GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
+ + + L + + ++ G+YEKA E K I + Y
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112
+ LS + + +++ Y++ L+LD +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSA 90
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 9e-13
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G EA+ ++ + D + F N +A + N EKALE +K I ++P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 77 DWPKGYSRKGSALSYLGRY 95
D K + +
Sbjct: 225 DHMLALHAKKLLGHHHHHH 243
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 14/231 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G K N EA + + P ++ E ++ I
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+ + + A + P+ L S + + +
Sbjct: 86 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLN 140
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ +Y + A+ NP+D + +++ Y +D
Sbjct: 141 V---------QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ ++L P + W + G L + +A+DAY +AL+++
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 16/124 (12%), Positives = 34/124 (27%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
M + + +A + E E G + K A+A + P+ + + +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
+ L + LDPK + + A+ + L
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 479 NAEA 482
+
Sbjct: 122 YEQL 125
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G +NN+ A A++L + L++ A A ++AL+ + + + P
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------EQMKEAIKDVRNQEMN 128
+ + + S + +Y + + + + ++ D +N
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297
Query: 129 DMNRGD 134
MNR D
Sbjct: 298 VMNRPD 303
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 32/250 (12%), Positives = 69/250 (27%), Gaps = 56/250 (22%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDP---------------TDITFQNNIAAVYFERKEY 297
L + N ALA + P D + + EY
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
+C +E + A+ +G Y ++ +A +++
Sbjct: 155 RECRTLLHAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVE----------- 200
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
++ ++ + + G L + +A+ Y A++ NP + N
Sbjct: 201 ------LRPDDAQLWNK---------LGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK------------GKILQGMQQQSKA 465
A Y+ ++ +DL K + + +L M +
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305
Query: 466 IDAYEKALEL 475
Y + +E
Sbjct: 306 ELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 17/96 (17%), Positives = 43/96 (44%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ N + E A++++ + L ++ + NY+ A + + + L+P
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + +++ G+ L+ R +E++ Y L ++P
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G + L+ N EA A+ + + + A+ A+ L P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM--KEAIKDVRNQEMNDMNRGD 134
++ + + ++++ L P EQ+ DV ++N +
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146
Query: 135 PFANL 139
FA
Sbjct: 147 FFAAP 151
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 12/87 (13%), Positives = 24/87 (27%)
Query: 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+ ++ Y H + K N +A E P+ + +
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNN 112
G + + +I LDP +
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKD 88
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 16/91 (17%), Positives = 24/91 (26%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451
G +Y N + KLA E + P+ + W
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 452 KGKILQGMQQQSKAIDAYEKALELDASNAEA 482
G ++ AI A A LD +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLD---------------GTNHILFSNRSAAFAKEGNY 61
+ +N A+ + + + + + FA Y
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
+ + + P+ + ++ G + Y + + ++L P++ Q+
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN------- 111
G+ + D + + + +G ++ L E+ +E + P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 112 -------NEQMKEAIKD 121
NE+ AI
Sbjct: 61 LGLTQAENEKDGLAIIA 77
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G+ + ++A+A Y A + I Y + Q +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + +G + +WK A+ +F ++ + +
Sbjct: 191 ED---PFVMHEVGVVAFQNGEWKTAEKWFLDAL-----------------EKIKAIGNEV 230
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
G+ K KYA+A+ + +A+ P + YS ++ + F+ +
Sbjct: 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470
T L L G ++ S+A +
Sbjct: 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 38/233 (16%)
Query: 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIA 318
E A + +KA + T + E+DQ + Y +
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---H 159
Query: 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA 378
+ IG Y + K A+ +F +++S I P
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALS--------------------------IAPEDP 193
Query: 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPD------DPKY---YSNRAACYTKLAAFD 429
E G F+NG++ A K + +A+ + K+ +N KL +
Sbjct: 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P+ + G I M A+D + AL L + +
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 30/232 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L Y +F+ + +E DP + E + ++ + ++
Sbjct: 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87
Query: 313 DFKLIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+ +G Y + ++A+ Y K+ +++ A
Sbjct: 88 SN---PVSWFAVGCYYLMVGHKNEHARRYLSKAT-----------------TLEKTYGPA 127
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+I G+ ++ A+ Y A Y L
Sbjct: 128 WIA---------YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
+ L + P+ G + + A + ALE + V
Sbjct: 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL-- 74
G NN A +S+A+ + + + + G ++ A + +
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 75 -------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
W + G L +Y E++ + + L L P N
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEGNYEKALED 67
G A Q + A + + +A++ L +N K Y +AL+
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
+ + L P YS G S +G ++ ++ + L L ++ +
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 16/95 (16%), Positives = 34/95 (35%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G++ + +A+ AY A +L H+ + N + A + +S+ P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ P G G +K + + + L+
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY 61
E++ L + ++ +F + S ++ D + +
Sbjct: 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLKLDPNN 112
+ + K + L P P + G +G + + + L+
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 17 KGNAALQANNFIE-AIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G L + E A S+A L+ T + +FA E +++A+ L
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G K + + + L + P +
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 15/87 (17%), Positives = 34/87 (39%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G+ + + EA++ + +A+ L N +S + GN+E A++ + L+
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYE 103
D + G + E+ +
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 9e-11
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 38/159 (23%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ---------NNIAAVYFERKEYDQCIE 302
E+G A++ ++ A + A+E NN+ V + K+Y + ++
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
+ Q + A IG + M +++NA YF ++
Sbjct: 258 YHRQALVLIPQN---ASTYSAIGYIHSLMGNFENAVDYFHTALG---------------- 298
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
+ G+ + ++A
Sbjct: 299 ----------LRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 9/86 (10%), Positives = 24/86 (27%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
+ E++ N + + + +++ + + P
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 89 LSYLGRYKESISTYEEGLKLDPNNEQ 114
L L + E + + L P+N
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPV 91
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 59 GNYEKALEDA-EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G+Y K E +++ + Y +K ++ DP +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH 55
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 36/237 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+G EA +++K+ DP A + E+DQ I Y
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+G + ++ + A Y + S +
Sbjct: 439 GT---HLPYLFLGMQHMQLGNILLANEYLQSSYA-------------------------- 469
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAI-------NRNPDDPKYYSNRAACYTKL 425
+ E G F A+ + A+ + ++N Y KL
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+D + L L + + AI ++L + + A
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-25
Identities = 61/491 (12%), Positives = 133/491 (27%), Gaps = 68/491 (13%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
L+ + AL + A + + + G + F + + G+Y +A K
Sbjct: 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTK 142
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
Y + ++ L L ++ K+ M D
Sbjct: 143 EDLYNRSSACRY--------LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194
Query: 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
+ + ++ L + Y + + D +
Sbjct: 195 GIKLEASMCYLRGQVYTNLS-----NFDRAKECYKEALM-------------VDAKCYEA 236
Query: 191 LSVLLGVNMSSTMGDGD-AEEMDVDPQPPSPKKAPSP-----------PPAKKPAEPEDK 238
L+ ++ + + D +++ + AE
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYD 298
++ ++S+ + + + F + LA K +E DP ++ A E E +
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 299 QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358
+ ++ + A +G Y + A+ YF KS S
Sbjct: 357 KLYLISNDLVDRHPEK---AVTWLAVGIYYLCVNKISEARRYFSKS-------------S 400
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
M+ + A+I + G++ A+ YT A Y
Sbjct: 401 TMDPQFGP----AWIG---------FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478
+ +L L + ++ L G + AI+ ++ AL L
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 479 NAEAVEGYRQC 489
+ +
Sbjct: 508 TQSNEKPWAAT 518
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 20/205 (9%), Positives = 55/205 (26%), Gaps = 22/205 (10%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + ++A++ Y A + + + E
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
L +G D + A +F+ ++ + + + ++ +
Sbjct: 473 YD---PLLLNELGVVAFNKSDMQTAINHFQNALL----------LVKKTQSNEKPWAATW 519
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ G+ K Y A+ + + + +D ++ A Y L +
Sbjct: 520 AN---------LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQ 457
L + P + + L+
Sbjct: 571 THLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 3e-19
Identities = 40/321 (12%), Positives = 97/321 (30%), Gaps = 20/321 (6%)
Query: 167 MIKEIQKDPSLMTTK--LKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAP 224
++K Q D + +T P + + +M + + ++ P A
Sbjct: 2 VVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLAN 61
Query: 225 SPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284
+ + + TD + ++A ++ ++ A K ++
Sbjct: 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF 121
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+A VY +Y + ++ + C K+ DW+ A ++
Sbjct: 122 -WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ + + + IK E A RG + A + Y EA
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLE----------ASMCYLRGQVYTNLSNFDRAKECYKEA 226
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGL---KDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+ + + + + + A + L + T K D FL+ +
Sbjct: 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286
Query: 462 QSKAIDAYEKALELDASNAEA 482
+ + + Y ++ +++
Sbjct: 287 ELRRAEDYLSSINGLEKSSDL 307
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 18/176 (10%), Positives = 47/176 (26%), Gaps = 30/176 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
LG + + N A + + D N + V F + + I + +
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 310 -NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
+++ K A +G+ Y+K++ + A + + +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG-----------------LLLSTND 549
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ A+ E++ +P++ +
Sbjct: 550 ANVHTA---------IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL-- 74
G +Q N + A E + L + +L + + + + A+ + + L
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 75 -----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ W ++ G A L Y +I +GL L N+
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 9e-15
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKL-------DGTNHILFSNRSAAFAKEGNYEKALEDAE 69
G A ++ AI + A+ L + ++N A+ K Y+ A++
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
+ + L + ++ + +I+ E L + PN + +K
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 17/109 (15%), Positives = 37/109 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
++ +AI AY+ A +L H+ + + GN A E + + +L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
P + G + +I+ ++ L L + ++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 10/102 (9%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ-------NNIAAVYFERKEYDQCIEQY 304
ELG A+ K + + A+ H+ A+ + + N+ Y + K YD I+
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
Q + + A I Y + A + +S++
Sbjct: 540 NQGLLLSTND---ANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-27
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----EQMKEAIKDVRNQEMND 129
L + KGY R+ ++ LG+++ ++ YE +K+ P++ + +E K V+ +
Sbjct: 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128
Query: 130 MNRGD 134
GD
Sbjct: 129 AIAGD 133
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 34/117 (29%), Positives = 62/117 (52%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L
Sbjct: 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490
D ++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+
Sbjct: 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++ K N+ +K K++E A+ Y++A+E +P++ + N + Y + Y + +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIK 365
IE + K R + ++ A +E + + + + E K +K
Sbjct: 66 AIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122
Query: 366 EEEKKAYIDPVKAEEAKER 384
++ + + +E K
Sbjct: 123 QKA---FERAIAGDEHKRS 138
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-26
Identities = 19/230 (8%), Positives = 48/230 (20%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + + Q
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+ G + +E + ++
Sbjct: 308 QQ---VVAIASNGGGKQALETVQRLLPVLCQAHG-------------------------- 338
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A P+ ++ L L
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 398
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P+ + Q ++ + + +A L A
Sbjct: 399 PVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 8e-26
Identities = 20/231 (8%), Positives = 48/231 (20%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+ G + +E + ++
Sbjct: 205 PQQ---VVAIASNGGGKQALETVQRLLPVLCQAHG------------------------- 236
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A P ++ + L
Sbjct: 237 -LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL 295
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + G Q ++ + + +A L A
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-22
Identities = 22/236 (9%), Positives = 50/236 (21%), Gaps = 33/236 (13%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
AK+ EA + AL + P + + + + + Q
Sbjct: 42 AKRGGVTAVEA--VHAWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ 97
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
A+ + +E + ++
Sbjct: 98 AHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAHG-------------------- 134
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ P + + +A P+ ++ L
Sbjct: 135 ------LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + G Q ++ + + +A L A
Sbjct: 189 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 14/191 (7%), Positives = 37/191 (19%), Gaps = 29/191 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + Q
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A+ G + +E + ++
Sbjct: 376 EQ---VVAIASNGGGKQALETVQRLLPVLCQAHG-------------------------- 406
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A P ++ L + L
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466
Query: 433 KDCETCLKLDP 443
+ L
Sbjct: 467 SRPDPALAALT 477
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 10/101 (9%), Positives = 23/101 (22%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L P + G L + + + L P
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ + L + + + L P E + +
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 9/119 (7%), Positives = 24/119 (20%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ L + + + L P E ++ +
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 14/119 (11%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ S ++ L + L P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKD 121
+ G L + + + L P E ++ +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 9/99 (9%), Positives = 22/99 (22%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ + L +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L P+ + G L + + + L P
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G L + + + L P
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 8/96 (8%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 78 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + L + + + L P
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 11/122 (9%), Positives = 28/122 (22%), Gaps = 14/122 (11%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAI 119
L P+ + G L + + + L P E ++ +
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL 432
Query: 120 KD 121
Sbjct: 433 PV 434
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 13/126 (10%), Positives = 33/126 (26%), Gaps = 5/126 (3%)
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDPKYYS 416
+ + + P++ + + +AV + A+ P+ +
Sbjct: 17 EALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIA 76
Query: 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ L L L P+ + Q ++ + + +A L
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 477 ASNAEA 482
A
Sbjct: 137 PEQVVA 142
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 20 AALQANNFIEAIEAYSEA-----IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL 74
A +EA+ A+ A + L + ++ ++ L + L
Sbjct: 42 AKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 101
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P + L + + + L P
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G AL+A A E ++LD + + R A E + ++L P+
Sbjct: 12 GARALEAL-LTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPE 70
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 10/105 (9%), Positives = 22/105 (20%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ A + + + + R A
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P+ + Q ++ + + +A L A
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 30/275 (10%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G + K+ + + A+ DP D + E + I + +E +
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK-- 369
+ KAL + Y ++A + + ++ P+ + L+ + +
Sbjct: 130 PNN---LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMS 184
Query: 370 KAYIDPVKAEEAKE--------------------RGNELFKNGKYADAVKEYTEAINRNP 409
K+ +D E KE G +G++ A+ + A+ P
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP 244
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+D ++ A + ++ L++ P F++ G + +A+ +
Sbjct: 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
Query: 470 EKALELDASNAEAVEGYRQCSIAVSSNPEEVRKRA 504
AL L + + A+S N + A
Sbjct: 305 LTALSLQRKSRNQ---QQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 8e-19
Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 21/189 (11%)
Query: 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
E+++ E + +W+ +SE++ + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQ----------------AEWEEM--ARRNWISENQEAQNQ 44
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414
+S EK + + D A E G + K G + AI ++P D +
Sbjct: 45 VTVSASEKGYYFHTENPFKD---WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA 101
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ + + + CL+L P LK + Q A +A + ++
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161
Query: 475 LDASNAEAV 483
+ V
Sbjct: 162 QNPKYKYLV 170
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + F AI+A++ A+ + ++ L++ A A E+A+E + + ++P
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ--------MKEAIKDVRNQEMN 128
+ + G + LG Y+E++S + L L + + I ++
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338
Query: 129 DMNRGDPF-ANLFSDPNIFVQ-LQLDP 153
M++ + F A D ++ ++ LDP
Sbjct: 339 LMDQPELFQAANLGDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 31/255 (12%), Positives = 65/255 (25%), Gaps = 60/255 (23%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + ++A ++ +P N + + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 313 DFKLIAKALQR------------IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
+ +A + +G + ++ A F +++
Sbjct: 199 LYL---EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-------------- 241
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
++ E+ + G L + +AV+ YT A+ P + N
Sbjct: 242 ---VRPEDYSLWNR---------LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG------------MQQ------- 461
L A+ + + T L L K + G M Q
Sbjct: 290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349
Query: 462 QSKAIDAYEKALELD 476
+D +A LD
Sbjct: 350 NLGDLDVLLRAFNLD 364
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKL--DGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
+ + + ++ E Y EA D + L + F G + +A++
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++++P+ ++R G+ L+ R +E++ Y L++ P
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 14/98 (14%), Positives = 36/98 (36%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G L+ + I AI D + + A+ N + A+ ++ + L+P
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ K + + +++ + +K +P +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 15/97 (15%), Positives = 29/97 (29%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
+ A + + Y + + KEG+ + E I
Sbjct: 36 SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + + G + + +I + L+L PNN
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 14/95 (14%), Positives = 27/95 (28%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + N AI A ++L N + ++ + + A E + I P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ K + R +S +
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 12/111 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ ++ +A EA IK + L N+ + K+ D+ +K
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 77 D------------WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
P + G G + +I + L + P + +
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 24 ANNFIEAIEAYSEAIKLDGTNHILFSNRSA----AFAKEGNYEKALEDAEKTISLKPDWP 79
A F A A + + + + +E + + +EK + P
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 80 ----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G +G G +I E + DP +
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 37/233 (15%), Positives = 74/233 (31%), Gaps = 16/233 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G ++ + A+ + AV+ DP + + E ++ I + +E +
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D AL + + + A + P L++ E+
Sbjct: 129 PDN---QTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGL-- 181
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFD 429
+K L + + + + + A+ +P DP + +D
Sbjct: 182 -------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234
Query: 430 LGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ L + P W + G L Q +A+ AY +ALEL +
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)
Query: 302 EQYIQKIENRADFKL-IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
E+ IE+ DF + L+ + + W + +
Sbjct: 4 ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDY--------------DDLTSATY 49
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
+K + EE+ D + E G + G +AV + A+ ++P + +
Sbjct: 50 DKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 106
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
+ L + CL+L P + Q +A + L + A
Sbjct: 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166
Query: 481 EAVEGYRQCS 490
V + +
Sbjct: 167 HLVTPAEEGA 176
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 26/249 (10%), Positives = 56/249 (22%), Gaps = 53/249 (21%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDP---------------TDITFQNNIAAVYFERKEY 297
L + +A + + P + I +
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197
Query: 298 DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
+ E ++ + + +G + ++ A F ++S
Sbjct: 198 LEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALS----------- 245
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
++ + + G L + +AV Y A+ P + N
Sbjct: 246 ------VRPNDYLLWNK---------LGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKF-----------LKGWIRKGKILQGMQQQSKAI 466
L A ++ L + K W L + Q
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350
Query: 467 DAYEKALEL 475
A + L
Sbjct: 351 AADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 23/255 (9%), Positives = 59/255 (23%), Gaps = 50/255 (19%)
Query: 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDP----TDITFQNNIAAVYFERKEYDQCIEQY 304
+++ + + A Y+K +F+ D + + + +
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKI 364
++ +A Q +G + E A + +
Sbjct: 88 EAAVQQDPKH---MEAWQYLGTTQAENEQELLAISALRRCLE------------------ 126
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT- 423
+ P A + + + P +
Sbjct: 127 --------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178
Query: 424 --------------KLAAFDLGLKDCETCLKLDPKFL--KGWIRKGKILQGMQQQSKAID 467
+ F + ++LDP + G + + KA+D
Sbjct: 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD 238
Query: 468 AYEKALELDASNAEA 482
+ AL + ++
Sbjct: 239 CFTAALSVRPNDYLL 253
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 16/98 (16%), Positives = 45/98 (45%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + + +A++ ++ A+ + +++L++ A A E+A+ + + L+P
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + G + LG ++E++ + E L + +
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 14/98 (14%), Positives = 33/98 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G LQ + A+ + A++ D + + A+ A+ + + LKP
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + + +++ + L+ P
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ L + F+E E + A++LD T+ + F G Y+KA++ +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+P+ +++ G+ L+ + +E+++ Y L+L P
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFS----NRSAAFAK 57
+ LQ+ + E++ + + L + Y + + + N + +
Sbjct: 18 DKLQAELEEMAKRDAEAHPWLSDYDD-LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ 76
Query: 58 EGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
EG+ A+ E + P + + G+ + + +IS L+L P+N+
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + + AI A ++L N + +F E +A E + P
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 77 DWPKGYS---------------RKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + R +L + E + ++LDP +
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 11/101 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G N EA+ AY A++L N + G + +A+E + ++++
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 77 DWP-----------KGYSRKGSALSYLGRYKESISTYEEGL 106
+S ALS LG+ + L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 6e-24
Identities = 32/62 (51%), Positives = 45/62 (72%)
Query: 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSG 553
+ PEE +RAM DPEV I++DP M+ IL+Q Q +P AL +H+KNPE+ KIQ L+ +G
Sbjct: 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAG 65
Query: 554 LI 555
+I
Sbjct: 66 II 67
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 8e-23
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN------------------R 407
E++K E +++GNELF Y +A+ Y +A+
Sbjct: 4 EDDKLK-----SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVEL 58
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+ + Y+N + CY + + LK + K R+ K + +A +
Sbjct: 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
Query: 468 AYEKALELDASNAEAVE 484
+ L + A V
Sbjct: 119 DLKLLLRNHPAAASVVA 135
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-19
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAI------------------KLDGTNHILFSNR 51
V L+ KGN ++ EAI+AY +A+ +LD N L++N
Sbjct: 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69
Query: 52 SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
S + G+ +A E + + + + K R+ A + E+ + L+ P
Sbjct: 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
Query: 112 NEQMKEAIKDVRNQEMNDMNRGD--PFANLF 140
+ + + + ++ +F
Sbjct: 130 AASVVAREMKIVTERRAEKKADSRVTYSKMF 160
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 7e-14
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 30/160 (18%)
Query: 239 NLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAV------------------EFDP 278
+ ++ + S + ++ GNE + +K+++EA+ Y A+ E D
Sbjct: 1 SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60
Query: 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338
+I N++ Y + + E + ++ KAL R A+
Sbjct: 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAE 117
Query: 339 VYFEK------SMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + + E++ +++E + K + + Y
Sbjct: 118 EDLKLLLRNHPAAASVVAREMK-IVTERRAEKKADSRVTY 156
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 9e-23
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 16/143 (11%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAA 420
A + KE GNE FK + +A+ +Y EA++ N A
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
CY K + + LK+D +K + G +A + KA L+ +N
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 481 EAVEGYRQCSIAVSSNPEEVRKR 503
+ Y C + ++ +
Sbjct: 157 DIRNSYELCVNKLKEARKKDKLT 179
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 8e-19
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 19/151 (12%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----------------ILFSNRSA 53
+K++GN + N EAI Y EA+ N +
Sbjct: 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96
Query: 54 AFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ K +Y KA++ A K + + + K + G A Y G +E+ + L+PNN
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 114 QMKEAIKDVRNQEMNDMNRGD--PFANLFSD 142
++ + + ++ + + D F +F
Sbjct: 157 DIRNSYELCV-NKLKEARKKDKLTFGGMFDK 186
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 233 AEPEDKNLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------ 284
A+ + TDE++ SA KE GNE +KK EA+ Y +A++F +
Sbjct: 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81
Query: 285 ----------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334
N+A Y + K+Y + I+ + ++ + KAL ++G
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFL 138
Query: 335 KNAKVYFEKSMSEH-RTPEIRTLISEMEKKIKEEEKK 370
+ AK K+ S + +IR K+KE KK
Sbjct: 139 EEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 2e-22
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 19/224 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + Y ++ AL + +A++ +P D +A + + +E +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ + Y + + + + + +S ++ +
Sbjct: 71 RY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQ--------ALSVLKDAER------- 112
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
++P A +RG G+ A +A+ P+ S A Y + D L
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEAL 171
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L+ PK L +R L + +A A
Sbjct: 172 AQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 1/95 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G +A + +A+ L+ + S + + G ++AL K + P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
R SAL G+ +E+ +
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 25/201 (12%), Positives = 55/201 (27%), Gaps = 23/201 (11%)
Query: 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ + YD + + + ++ +AL + K+ A +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKT 64
Query: 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYID--PVKAEEAKERGNELFKNGKYADAVKEY 401
++ Y+ ++ + G A+
Sbjct: 65 LVA-----------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107
Query: 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+A NP + R Y L D + L L+ + ++ M +
Sbjct: 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGR 166
Query: 462 QSKAIDAYEKALELDASNAEA 482
+A+ Y KALE + +
Sbjct: 167 LDEALAQYAKALEQAPKDLDL 187
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 5e-15
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK-----------EGNYEKAL 65
L+ A+E + + S A+ +G E+AL
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 66 EDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ + P + + ++G + LG ++ ++ ++ L L+ E
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPE 152
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 5e-15
Identities = 20/202 (9%), Positives = 49/202 (24%), Gaps = 41/202 (20%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-----------RKEYDQCI 301
L K AL + V P + ++ Y + +Q +
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361
+ A + G Y + + A+ +++++
Sbjct: 105 SVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALA--------------- 146
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
++ E G+ +A+ +Y +A+ + P D A+
Sbjct: 147 -----------LED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Query: 422 YTKLAAFDLGLKDCETCLKLDP 443
+ +
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + A+ + A+K + + + K G ALE+ + ++ P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 77 DWPKGYSRKGSALSYL-----------GRYKESISTYEEGLKLDPNN 112
+ GY A L G ++++S ++ +++P
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
L + + +A+ +A +++ L R +A G +KA ++ +
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+L+ P+ S +GR E+++ Y + L+ P +
Sbjct: 146 ALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 8e-10
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
G Y+ AL E+ + P P+ LG ++ + +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 110 PNN 112
P
Sbjct: 70 PRY 72
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 30/163 (18%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
++ + K E+AL+ A +P VY E D+ Q
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKE 366
+ D + + Y M A + K++
Sbjct: 144 ALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALE-------------------- 179
Query: 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
P + + L GK +A + + +
Sbjct: 180 ------QAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 8/74 (10%), Positives = 20/74 (27%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ L +D L E LK +P+ + + + + A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 469 YEKALELDASNAEA 482
+ +
Sbjct: 62 GKTLVARTPRYLGG 75
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 4e-22
Identities = 21/230 (9%), Positives = 47/230 (20%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + L +A P + + + + + Q
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D A+ + +E + ++
Sbjct: 258 DQ---VVAIASNIGGKQALETVQRLLPVLCQAHG-------------------------- 288
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + G + +A PD ++ L L
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 348
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + G Q ++ + + +A L A
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 2e-20
Identities = 23/240 (9%), Positives = 55/240 (22%), Gaps = 15/240 (6%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ ++ L +A P + + + + Q
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM----------EK 362
D A+ G + +E + ++ TP+ I+ ++
Sbjct: 529 DQ---VVAIASNGGGKQALETVQRLLPVLCQAHGL--TPDQVVAIASNGGGKQALETVQR 583
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
+ + + V+ + +A P ++
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 643
Query: 423 TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P + G Q ++ + + +A L A
Sbjct: 644 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 5e-20
Identities = 19/231 (8%), Positives = 46/231 (19%), Gaps = 30/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D A+ + +E + ++
Sbjct: 325 PDQ---VVAIASHDGGKQALETVQRLLPVLCQAHG------------------------- 356
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A PD ++ L
Sbjct: 357 -LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRL 414
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + Q ++ + + + L + A
Sbjct: 415 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 3e-19
Identities = 21/230 (9%), Positives = 47/230 (20%), Gaps = 30/230 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+ + L +A P + + + + + Q
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D A+ G + +E + ++
Sbjct: 292 DQ---VVAIASHGGGKQALETVQRLLPVLCQAHG-------------------------- 322
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ P + + +A PD ++ L L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 382
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + G Q ++ + + +A L A
Sbjct: 383 PVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVA 431
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 90.9 bits (225), Expect = 3e-19
Identities = 18/231 (7%), Positives = 46/231 (19%), Gaps = 29/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A + + + + + Q
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
A+ + +E + ++
Sbjct: 630 PAQ---VVAIASHDGGKQALETVQRLLPVLCQAHG------------------------- 661
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + G + +A + ++ L
Sbjct: 662 -LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRL 720
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + G Q ++ + + +A L + A
Sbjct: 721 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 2e-18
Identities = 19/238 (7%), Positives = 52/238 (21%), Gaps = 10/238 (4%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A P + + + + + Q
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-------EHRTPEIRTLISEMEKKI 364
D A+ G + +E + ++ + + + +++ +
Sbjct: 359 PDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLL 415
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ + P + + + P ++
Sbjct: 416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQA 475
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L L P + Q + + + +A L A
Sbjct: 476 LETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 2e-18
Identities = 18/230 (7%), Positives = 44/230 (19%), Gaps = 29/230 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A P + + + + + Q
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+ + +E + ++
Sbjct: 597 VQ---VVAIASNIGGKQALETVQRLLPVLCQAHGLT------------------------ 629
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
P + + +A PD ++ L L
Sbjct: 630 --PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 687
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L + + Q ++ + + +A L A
Sbjct: 688 PVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 1e-15
Identities = 22/231 (9%), Positives = 48/231 (20%), Gaps = 30/231 (12%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
G + + L +A P + + + + + Q
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT 425
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
D A+ + +E + ++
Sbjct: 426 PDQ---VVAIASHDGGKQALETVQRLLPVLCQTHG------------------------- 457
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG 431
+ P + + +A PD ++ LA
Sbjct: 458 -LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRL 516
Query: 432 LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L L P + G Q ++ + + +A L A
Sbjct: 517 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 1e-14
Identities = 18/220 (8%), Positives = 42/220 (19%), Gaps = 29/220 (13%)
Query: 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322
+A ++ D + V + + A+
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQ---VVAIA 196
Query: 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382
+ +E + ++ + P +
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHG--------------------------LTPAQVVAIA 230
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442
+ +A PD ++ L L L
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 290
Query: 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
P + G Q ++ + + +A L A
Sbjct: 291 PDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 11/99 (11%), Positives = 25/99 (25%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + G L + + + L P+
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 2e-13
Identities = 10/102 (9%), Positives = 24/102 (23%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
V + + +A L + ++ ++ L +
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + L + + + L P+
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 10/101 (9%), Positives = 24/101 (23%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 229 IASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L PD + G L + + + L P+
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 4e-13
Identities = 9/99 (9%), Positives = 23/99 (23%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L PD + L + + + L P+
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 6e-13
Identities = 10/98 (10%), Positives = 24/98 (24%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + +A L + ++ ++ L + L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G L + + + L P+
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 1e-12
Identities = 15/241 (6%), Positives = 50/241 (20%), Gaps = 15/241 (6%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + L +A P + + + + + Q
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE----------IRTLISEME 361
+ A+ + +E + ++ TP+ + + ++
Sbjct: 698 QEQ---VVAIASNNGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQ 752
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
+ + + + P + + + ++
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
L L L + Q ++ + + + L
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872
Query: 482 A 482
A
Sbjct: 873 A 873
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 7/96 (7%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + L + + + L P+
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 7e-12
Identities = 9/96 (9%), Positives = 22/96 (22%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P+
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 1e-11
Identities = 9/96 (9%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + G L + + + L
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 9/98 (9%), Positives = 21/98 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G L + + + L
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 8/99 (8%), Positives = 21/99 (21%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ G + +A L + ++ ++ L +
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 593
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L + L + + + L P
Sbjct: 594 LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 7e-11
Identities = 11/96 (11%), Positives = 24/96 (25%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ + ++ L + L P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + G L + + + L P
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 1/98 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ +A L + ++ ++ L + L P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
D + G + L + + + L P+
Sbjct: 394 DQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVV 430
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 5e-10
Identities = 8/96 (8%), Positives = 21/96 (21%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + L + ++ ++ L + L P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D + L + + + L P+
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 28 IEAIEAYSEA-----IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
+EA+ A A + L + ++ + ++ L + L P
Sbjct: 170 MEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI 229
Query: 83 SRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L P+
Sbjct: 230 ASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 9/86 (10%), Positives = 23/86 (26%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
+ +A L + ++ ++ L +T L P +
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 89 LSYLGRYKESISTYEEGLKLDPNNEQ 114
L ++ + + L P+
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVV 498
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 17/239 (7%), Positives = 51/239 (21%), Gaps = 11/239 (4%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G + + L +A + + + + + Q
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS--------EHRTPEIRTLISEMEKKI 364
D A+ G + +E + ++ + + +++ +
Sbjct: 733 DQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 365 KEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424
+ + + + +A D ++
Sbjct: 790 PVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQA 849
Query: 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
L L L P + Q ++ + + + L A+
Sbjct: 850 LETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI 908
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 7/101 (6%), Positives = 20/101 (19%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + +A L + ++ ++ L +
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L P + L + + + L
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVV 804
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 9e-08
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 1/97 (1%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G AL+A +A E ++LD + + R A E + ++L
Sbjct: 130 WSGARALEAL-LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT 188
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + L + + + L P
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 17/105 (16%), Positives = 38/105 (36%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY 61
L L + L + A +A+E + + H L ++ A A
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
++ALE ++ + + + A++ K+++ T + L
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLL 891
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 2 ENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-- 59
L L + L D+ A +A+E + + +H L ++ A A G
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Query: 60 ----NYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
++ L + L PD + L + + + L PN
Sbjct: 915 QALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 7/96 (7%), Positives = 20/96 (20%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G + +A L + ++ ++ L + L
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ L + + + L +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQ 836
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 12/102 (11%), Positives = 24/102 (23%)
Query: 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440
K+ DA + + + + R A L
Sbjct: 127 GKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLN 186
Query: 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
L P + Q ++ + + +A L + A
Sbjct: 187 LTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVA 228
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 28/276 (10%), Positives = 67/276 (24%), Gaps = 25/276 (9%)
Query: 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI 317
++AL + + D Q +E + + +
Sbjct: 773 ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGL 832
Query: 318 ----AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
A+ + +E + + + + K+ E ++
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Query: 374 DPVKAEEAK-ERGNELFKNGK------YADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426
+ ++ + NG + + PD ++ + L
Sbjct: 893 VLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952
Query: 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL------ELDA--- 477
L L P + G Q ++ + + AL L A
Sbjct: 953 TVQRLLPVLCQDHGLTPNQVVAIASNG-GKQALESIVAQLSRPDPALAALTNDHLVALAC 1011
Query: 478 -SNAEAVEGYRQCSIAVSSNPEEVRKRAMGDPEVQQ 512
A++ ++ + PE +R+ E
Sbjct: 1012 LGGRPAMDAVKK---GLPHAPELIRRVNRRIGERTS 1044
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 7/99 (7%), Positives = 21/99 (21%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + L + ++ ++ L +
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHG 831
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
L D + L + + + L P+
Sbjct: 832 LTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQ 870
|
| >2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 8e-22
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL-KDPRMMTTLSV 193
LF+DPN+ L+ +P+T + DP V + +++P + L DPR+MT ++
Sbjct: 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMAT 64
Query: 194 LLGVNMS 200
L+GV+++
Sbjct: 65 LMGVDLN 71
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-21
Identities = 18/120 (15%), Positives = 37/120 (30%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ E+ G ++ GK+ DA K + + D +Y+ AC L ++ L
Sbjct: 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
+ +D + + + A + A L A+ +
Sbjct: 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 7e-17
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
L G QA + +A + + LD + F A G YE+AL+
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----------EQMKEAIKDVR 123
+ + P+ LG + S + L M EA+ +
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
Query: 124 NQ 125
++
Sbjct: 141 DR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 15/123 (12%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
LG Y+ +++A + D D + + A Y+Q ++ Y
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EHRTPEIRTLISEMEKKIKEE 367
+ + C+ ++ D A+ F + + + + M + +
Sbjct: 83 INE---PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139
Query: 368 EKK 370
+ +
Sbjct: 140 KDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-09
Identities = 13/160 (8%), Positives = 34/160 (21%), Gaps = 29/160 (18%)
Query: 268 AHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327
+ + ++ ++D + + A+ +G C
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGAC 61
Query: 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387
+ + ++ A + +D +
Sbjct: 62 RQSLGLYEQALQSYSYGAL--------------------------MDINEPRFPFHAAEC 95
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA 427
+ G A + A P + + A L A
Sbjct: 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-09
Identities = 12/80 (15%), Positives = 27/80 (33%)
Query: 33 AYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92
+ L + G ++ A + + L + + G+ L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 93 GRYKESISTYEEGLKLDPNN 112
G Y++++ +Y G +D N
Sbjct: 66 GLYEQALQSYSYGALMDINE 85
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 2e-21
Identities = 27/193 (13%), Positives = 61/193 (31%), Gaps = 29/193 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G K + +A+ + + D D+ ++ Y + D+ E + + +
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
D K +G Y +++ + A K
Sbjct: 74 DN---VKVATVLGLTYVQVQKYDLAVPLLIKVAE-------------------------- 104
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+P+ G L G++ +A+ + A+ P++ K + A Y ++ + L
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Query: 433 KDCETCLKLDPKF 445
+ +LD
Sbjct: 165 PHFKKANELDEGA 177
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 1e-20
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 29/198 (14%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + + Y Q + Q + A +G Y K E+S
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
++ P + A G + KY AV +
Sbjct: 69 LA--------------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
NP + L FD + + L L P K + M + +
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Query: 465 AIDAYEKALELDASNAEA 482
A+ ++KA ELD +
Sbjct: 163 ALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 81.7 bits (203), Expect = 3e-18
Identities = 17/96 (17%), Positives = 41/96 (42%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
KG + +A + +A+ + D + + + A+ K G ++ E E++++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D K + G + +Y ++ + + +P N
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 81.3 bits (202), Expect = 5e-18
Identities = 21/96 (21%), Positives = 36/96 (37%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G A ++ E ++ N + + + + Y+ A+ K P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
R G AL LGR+ E+I +++ L L PN
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 9e-18
Identities = 15/96 (15%), Positives = 42/96 (43%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G +Q + A+ + + + N + A G +++A++ + + L+P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ K + + +GR++E++ +++ +LD
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 8e-13
Identities = 17/165 (10%), Positives = 48/165 (29%), Gaps = 29/165 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG K + +++ P ++ + Y + ++YD + I+ E
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
R+G + + A F+ ++
Sbjct: 108 IN---FNVRFRLGVALDNLGRFDEAIDSFKIALG-------------------------- 138
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSN 417
+ P + + + + G++ +A+ + +A + +
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 3e-12
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 38 IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKE 97
+ D + + ++ + AK G Y +A+ E+ G A G
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 98 SISTYEEGLKLDPNN 112
E L P+N
Sbjct: 61 GTELLERSLADAPDN 75
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 5e-10
Identities = 9/78 (11%), Positives = 23/78 (29%)
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464
+ + YY ++ + K + + E D + + G +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 465 AIDAYEKALELDASNAEA 482
+ E++L N +
Sbjct: 61 GTELLERSLADAPDNVKV 78
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-21
Identities = 25/230 (10%), Positives = 54/230 (23%), Gaps = 13/230 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G A +++A+ P N + + +D E + +E
Sbjct: 48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEI-----RTLISEMEKKIK 365
+ A G K A+ + P EK+ K
Sbjct: 108 PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164
Query: 366 EEEKKAY-IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
E K+ + + + + + T+ + +
Sbjct: 165 EVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
Y L D + + + L + Q + ++
Sbjct: 225 YLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-21
Identities = 33/246 (13%), Positives = 60/246 (24%), Gaps = 37/246 (15%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVE----FDPTDITFQNNIAAVYFERKEYDQ 299
S +K + L E LA + + D +Y
Sbjct: 2 NTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL 61
Query: 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ Q + R D + +G + ++ A F+ +
Sbjct: 62 ARNDFSQALAIRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLE------------- 105
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
+DP RG L+ G+ A + +P+DP
Sbjct: 106 -------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK---AIDAYEKALELD 476
KL + + + K GW L + +Q+ L
Sbjct: 153 LAEQKLDEKQA-KEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA 211
Query: 477 ASNAEA 482
+E
Sbjct: 212 EHLSET 217
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-17
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G A +S+A+ + +F+ + GN++ A E + + L P
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + +G AL Y GR K + + DPN+
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 18 GNAALQANNFIEAIEAYSEAIK----LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + D L R + G A D + ++
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
++PD P+ ++ G L+ G + + ++ L+LDP
Sbjct: 72 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 23/102 (22%), Positives = 32/102 (31%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
G QA NF A EA+ ++LD T + NR A G + A +D P
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ P A L + + K D
Sbjct: 143 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIV 184
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 7/76 (9%), Positives = 23/76 (30%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
++ L + G+ + A + ++ +
Sbjct: 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLE 258
Query: 89 LSYLGRYKESISTYEE 104
LS LG+ ++ ++ ++
Sbjct: 259 LSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNHILFSNRS---AAFAKEGNYEKALEDAEKTISLKPD 77
A Q + +A E + + ++ +++ E+ DA SL
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ G LG + + ++ + + +N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
LG + + A A + AV + + + + + Q+
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
G L + A + A+ + N + + G + L ++++
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 3e-21
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-----AEEAKERGNELFKNGK 393
+ + + P L E+ K E+ K+++ + + KERG FK GK
Sbjct: 103 AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK 162
Query: 394 YADAVKEYTEAINRNPDDP---------------KYYSNRAACYTKLAAFDLGLKDCETC 438
Y A+ +Y + ++ + + N A C+ KL AF ++ C
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L+LD KG R+G+ + A ++K L+L +N A C
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 8e-17
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAI---------------KLDGTNHILFSNRSAA 54
+ +++K++G + + +A+ Y + + K N +
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
K + A+E K + L + KG SR+G A + ++ + + +++ L+L PNN+
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265
Query: 115 MKEAIKDVRNQ 125
K + + +
Sbjct: 266 AKTQLAVCQQR 276
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 7e-15
Identities = 31/199 (15%), Positives = 76/199 (38%), Gaps = 29/199 (14%)
Query: 231 KPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---------- 280
K E + N ++ + KE G +K+ +++AL Y K V + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 281 -----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335
+ N+A + + + + IE + +E ++ K L R G + + D++
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFE 247
Query: 336 NAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394
A+ F+K + +T ++ +++I+ + + K+ +F+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----------EKKLYANMFERLAE 297
Query: 395 ADAVKEYTEAINRNPDDPK 413
+ + + +P D +
Sbjct: 298 EENKAKAEASSGDHPTDTE 316
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 3e-21
Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 27/250 (10%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF 292
+ K + +LG ++ N E+A KA+E DP+ +A V+
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ 82
Query: 293 ERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352
E E+Y + + + + A+ L G + + ++ A ++
Sbjct: 83 TEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEAS------- 132
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412
+ + E + + + G + K A A + + +++ N + P
Sbjct: 133 --------QDTLYPERSRVFEN---------LGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175
Query: 413 KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472
A K + + + + + + + ++ + + + A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 473 LELDASNAEA 482
L + E
Sbjct: 236 KRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 31/230 (13%)
Query: 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF 314
+ + + K + + Y +R +Q + +E
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYID 374
A A + ++ + K A + K+++ D
Sbjct: 71 ---ADAHAALAVVFQTEMEPKLADEEYRKALA--------------------------SD 101
Query: 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR--NPDDPKYYSNRAACYTKLAAFDLGL 432
A G L++ +Y +A + EA P+ + + N ++
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ E L+L+ + +L ++ A Y+ + NA +
Sbjct: 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 14/100 (14%), Positives = 33/100 (33%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G +LQ +A E + ++++L+ + + KE Y A + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+ + S + +L P + + +E
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 13/94 (13%), Positives = 27/94 (28%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
++ L + + K + + + GN E+A K + + P
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
++ K + Y + L D N
Sbjct: 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G LQ N +A +A+++D ++ + + F E + A E+ K ++
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLK--LDPNNEQ 114
+ + G L RY+E+ E + L P +
Sbjct: 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 9e-11
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIK--LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
G + + EA + EA + L +F N + +A E EK++ L
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ P L Y + Y+ + N
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 3e-20
Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 30/220 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L N ++ N EEA+ Y KA+E P +N+A+V ++ + + + Y + I
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
F A A +GN K+M+D + A + +++
Sbjct: 75 TF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-------------------------- 105
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I+P A+ + +G +A+ Y A+ PD P Y N A C + +
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472
+ + + + L+ R + + KA
Sbjct: 166 ERMKKLVSIVADQLEKN-RLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 5e-16
Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 40/233 (17%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
A +L + N ++ + + A + K++ + P
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--------------------------VFPEF 42
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A + L + GK +A+ Y EAI +P YSN ++ L+
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497
++++P F I + +AI +Y AL+L +A C
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC-------- 154
Query: 498 EEVRKRAMGDPEVQQILRDPAMRLILEQ--MQNDPRALSDHLKNPEIASKIQK 548
+ + D + ++ +Q P H ++ +K
Sbjct: 155 ----LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK 203
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 1e-15
Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 29/207 (14%)
Query: 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWK 335
PT NN+A + E+ ++ + Y + +E +F A A + + ++ +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQ 60
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
A +++++++ I P A+ GN L +
Sbjct: 61 EALMHYKEAIR--------------------------ISPTFADAYSNMGNTLKEMQDVQ 94
Query: 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455
A++ YT AI NP +SN A+ + + T LKL P F +
Sbjct: 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 456 LQGMQQQSKAIDAYEKALELDASNAEA 482
LQ + + + +K + + A E
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 1e-14
Identities = 19/97 (19%), Positives = 44/97 (45%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
N + N EA+ Y +A+++ SN ++ ++G ++AL ++ I + P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ YS G+ L + + ++ Y ++++P
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 74.8 bits (183), Expect = 3e-14
Identities = 24/95 (25%), Positives = 41/95 (43%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+ Q EA+ Y EAI++ T +SN + + + AL+ + I + P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +S S G E+I++Y LKL P+
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-11
Identities = 18/99 (18%), Positives = 41/99 (41%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GN + + A++ Y+ AI+++ SN ++ GN +A+ + LKP
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
D+P Y L + + + ++ + + + +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 47 LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106
+N + ++GN E+A+ K + + P++ +S S L G+ +E++ Y+E +
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 107 KLDPNN 112
++ P
Sbjct: 71 RISPTF 76
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 9e-04
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + N EAI +Y A+KL + N + ++ E +K +S
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYE 103
+ D + +R S + +
Sbjct: 174 IVADQLE-KNRLPSVHPHHSMLYPLSHGFR 202
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 4e-20
Identities = 30/251 (11%), Positives = 77/251 (30%), Gaps = 31/251 (12%)
Query: 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK-I 308
E + ++ E+ L + + + +Y E + K +
Sbjct: 71 EDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV 130
Query: 309 ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS----------------MSEHRTPE 352
+ + +A ++G Y K D +A F + + + +T
Sbjct: 131 KLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS 187
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF--------KNGKYADAVKEYTEA 404
+ +++ + +D + GN A+ Y +A
Sbjct: 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247
Query: 405 INRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
+ + NRA + ++ L+ LDP + + R+ ++L+ + +
Sbjct: 248 EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307
Query: 462 QSKAIDAYEKA 472
+ +++ K
Sbjct: 308 LTSLLESKGKT 318
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 6e-14
Identities = 17/155 (10%), Positives = 52/155 (33%), Gaps = 6/155 (3%)
Query: 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE--KKAYIDPVKAEEAKERGNEL 388
M + SM E + ++ +++ + + +Y + E+A + ++
Sbjct: 21 MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV 80
Query: 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL-GLKDCETCLKLDPKFLK 447
+ +++ E + + + + + +KL+P+ ++
Sbjct: 81 --QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
W + G++ + A + AL N +
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVS 172
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 2e-12
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILFSNRSAAFAKEGNYEKALED 67
+ L N +A+ AY++A K+D N L NR+ E +Y +ALE
Sbjct: 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280
Query: 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ +L P WP+ R+ L +L R + + K P Q
Sbjct: 281 FSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQ 324
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 4e-12
Identities = 29/270 (10%), Positives = 81/270 (30%), Gaps = 33/270 (12%)
Query: 237 DKNLTDEQRSAKKEKELGNEAYKKKNF-EEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
++ L Q A+ G ++ EA +KAV+ +P + N + VY+++
Sbjct: 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG 151
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV---------YFEKSMS 346
+ + + + + +LQ + ++++ + + ++
Sbjct: 152 DVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207
Query: 347 E----------------HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE---RGNE 387
++ + + +D + R
Sbjct: 208 MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267
Query: 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447
Y +A++ +++A +P P+ L+ L+ + +
Sbjct: 268 HKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSML 327
Query: 448 GWIRKGKILQGMQQQSKAIDAYEKALELDA 477
G +R + + ++ + LEL
Sbjct: 328 GSLRPAHLGPCGDGRYQSASGQKMTLELKP 357
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 6e-12
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY-EKALEDAEKTISLKPDWPKGYS 83
+ ++ E + + A +Y +A K + L+P+ + ++
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ G G + + + L N
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFA--------KEGNYEKALED- 67
+ + + ++++ A+++D + + A+ ++AL
Sbjct: 185 TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244
Query: 68 --AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
AEK P + + + Y Y E++ + + LDP +
Sbjct: 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 1/115 (0%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN 60
M Q + + ++ A ++ H + +
Sbjct: 24 MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEE 83
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRY-KESISTYEEGLKLDPNNEQ 114
EK L+ E+ + + KG AL+ Y E+ + +KL+P +
Sbjct: 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
++++ EAL +++A DP Q + +E
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG------- 316
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358
K K LQ + + ++ + + T E++ L +
Sbjct: 317 --KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLST 360
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 9e-20
Identities = 24/230 (10%), Positives = 65/230 (28%), Gaps = 48/230 (20%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ + A + +A++++ + + + + Y+ + +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNS------------ 50
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
++ +K + YKK ++ A +++++ +
Sbjct: 51 ---EISSKLATELALAYKKNRNYDKAYLFYKELLQ------------------------- 82
Query: 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA-ACYTKLAAFDL 430
P + + G+ DA++ Y + + D+ Y
Sbjct: 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
L+ L K R G + KA ++ +K + S
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 1e-17
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 11/166 (6%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
+ + + + A YF ++++ ++ ++ +
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----------LNIDRTEMYYWTNVDKNSEIS 53
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
++ A E KN Y A Y E + + P++ A L+ E
Sbjct: 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQ-SKAIDAYEKALELDASNAEA 482
L+L+ L I G +Q K ++ K L A
Sbjct: 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 4e-15
Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLD----------------GTNHILFSNRSAAFAKEGN 60
K +AA++A +A+ + + I L+ + L + + A+ K N
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 61 YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
Y+KA ++ + P+ G+ K+++ YE+ L+L+ +N
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-15
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN-YEKALEDAE 69
V L+ + +A+ Y + ++L+ N + +K LE
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116
K +S R G + + RY+++ ++ ++ + P+ E K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-14
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 30/176 (17%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
+ + S+K EL K +N+++A Y + ++ P ++ A + R + +
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCY-KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
Y + ++ AD A +GN Y E K K +S
Sbjct: 109 RMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLS-------------- 151
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
G +Y A + I R P +
Sbjct: 152 ------------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-13
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKT 71
L + A + N+ +A Y E ++ N + G + AL EK
Sbjct: 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 72 ISLKPDWPKGYSRKGSALSYLG-RYKESISTYEEGLKLDPNNEQ 114
+ L+ D G+ + K+ + T + L +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY----------------SRKGSALSYLG 93
+ +A + G +A+ +TI+L D + Y + A
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 94 RYKESISTYEEGLKLDPNNEQ 114
Y ++ Y+E L+ PNN
Sbjct: 69 NYDKAYLFYKELLQKAPNNVD 89
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 2e-19
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G A N+ E+I+ + +AI+LD + + A YE+A++ I++
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 77 D--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
D ++ K AL Y+ + E KL+ ++
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 2e-16
Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ EE G + G Y +++ + +AI +P++ KY+ + L ++ +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 433 KDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + D W K L+ ++ + + E +L+
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-12
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
GNY ++++ EK I L P+ K + KG AL L RY+E++ Y + +
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70
Query: 110 PNNE 113
+
Sbjct: 71 EDEY 74
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-10
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+P+ Y + + E ++LDP+ K W+ KGK L +++ +A+D
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 468 AYEKALEL--DASNAEA 482
Y + + D N +
Sbjct: 62 CYNYVINVIEDEYNKDV 78
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 6e-09
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G Y N+ E++ + KA++ DP + + + + Y++ ++ Y I
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
D + + +E + E
Sbjct: 72 DEYN-KDVWAAKADALRYIEGKEVEAEIAEA 101
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-06
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441
+G L+ +Y +AV Y IN D + ++ +A + ++ + E KL
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 442 DPKF 445
+
Sbjct: 106 EHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 3e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P+ Y +G G Y ESI +E+ ++LDP
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 6e-04
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE 309
G Y + +EEA+ YN + D + A + + E + +
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 83.2 bits (207), Expect = 3e-19
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+A G Y E+I Y++ L+LDP +
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 79.0 bits (196), Expect = 8e-18
Identities = 32/96 (33%), Positives = 56/96 (58%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD + + N A+ K+G+Y++A+E +K + L P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + G+A G Y E+I Y++ L+LDP +
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 72.4 bits (179), Expect = 2e-15
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ + L+LDP
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ + W G +AI+ Y+KALELD +AEA
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 68.2 bits (168), Expect = 5e-14
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P + + N Y K +D ++ + L+LDP
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + W G +AI+ Y+KALELD
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 3e-13
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP N+ Y+++ +YD+ IE Y + +E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A+A +GN Y K D+ A Y++K++
Sbjct: 67 RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE-------------------------- 97
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410
+DP AE GN +K G Y +A++ Y +A+ +P
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.1 bits (147), Expect = 3e-11
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
N+ Y+++ +YD+ IE Y + +E A+A +GN Y K D+ A Y++K+
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ +DP AE GN +K G Y +A++ Y +A
Sbjct: 62 LE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
Query: 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444
+ +P + + N Y K +D ++ + L+LDP+
Sbjct: 96 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 6e-11
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P + + G+A G Y E+I Y++ L+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 108 LDPNN 112
LDP +
Sbjct: 64 LDPRS 68
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 9e-07
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474
+ N Y K +D ++ + L+LDP+ + W G +AI+ Y+KALE
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 475 LDASNAEA 482
LD +AEA
Sbjct: 64 LDPRSAEA 71
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 6e-19
Identities = 24/255 (9%), Positives = 60/255 (23%), Gaps = 55/255 (21%)
Query: 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYF---ERKEYDQCIEQYIQKIENRADF 314
E A + KA+E P + F + +A + I+ Q I D
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
Query: 315 KLIAKALQRIGNCYKKMEDWKN----AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKK 370
+ KM + + E+++
Sbjct: 209 ---QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------------------------ 241
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA---- 426
P + + + + A++ +A+ P++ + CY
Sbjct: 242 --KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299
Query: 427 ---------------AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
+ + + + + + Q +A ++K
Sbjct: 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK 359
Query: 472 ALELDASNAEAVEGY 486
+ + +
Sbjct: 360 EFSKELTPVAKQLLH 374
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 33/258 (12%), Positives = 77/258 (29%), Gaps = 38/258 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + + E +A+E P + A Y + E D+ IE + +E
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+ A +IG CY+ KV+ ++ E+ R L+ + + +K
Sbjct: 279 NN---AYLHCQIGCCYRA-------KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAF 428
+ + +Y +A + + ++ + ++
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 429 DLGLKDCETCLKLDPK------------------------FLKGWIRKGKILQGMQQQSK 464
D + +K++ K + + + ++ +
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ 448
Query: 465 AIDAYEKALELDASNAEA 482
A + E+ LE + A
Sbjct: 449 ADEDSERGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 4e-16
Identities = 43/251 (17%), Positives = 72/251 (28%), Gaps = 45/251 (17%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF---------DPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K E AL KA E + + N A VY+
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI- 115
Query: 304 YIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
Y+ K+++ + + ++ ++ E+ + +
Sbjct: 116 YVDKVKH-------------VCEKFSSPYRIESPELDCEEGWT----------RLKCGGN 152
Query: 364 IKEEEKKAY-----IDPVKAEEAKERGN---ELFKNGKYADAVKEYTEAINRNPDDPKYY 415
E K + P E L +A+ +AI NPD+
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Query: 416 SNRAACYTKLA----AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
A K+ G K E L+ P K + + KAI+ +K
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 472 ALELDASNAEA 482
ALE +NA
Sbjct: 273 ALEYIPNNAYL 283
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 35/246 (14%), Positives = 76/246 (30%), Gaps = 34/246 (13%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
L +FE+ + Y + T N +A + + + + +E + E
Sbjct: 23 NLMEGENSLDDFEDKV-FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 312 ADFKLIAKALQRI------GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
++ + Y M + ++Y +K K +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV-----------------KHVC 124
Query: 366 EEEKKAYIDPVKAEEAKERGNELFK--NGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423
E+ Y E E G K + A + +A+ + P +P++ S A
Sbjct: 125 EKFSSPY-RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183
Query: 424 KLAAF---DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ----SKAIDAYEKALELD 476
+L + + ++L+P + L M+++ + E+ALE
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243
Query: 477 ASNAEA 482
+
Sbjct: 244 PGVTDV 249
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 9e-13
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 5/177 (2%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
Q +E + + + A+AH KA E + + +A+++ +Y++
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 304 YIQKIENRADFKLIAKALQRIGN-CYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEME 361
+ ++ R GN +M+ A +F + + ++ E + +++
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
K + + + +E N K A ++ + P S
Sbjct: 417 KIA---KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 27 FIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG---YS 83
A+ +A + + + S ++ A YE+A +K S + +
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375
Query: 84 RKGSALSY-LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFS 141
R G+ Y + ++I + EG+K++ + + ++ ++ +++ +
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALH 434
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 13 LLKDKGNAALQA--NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKALED 67
L ++G L+ N A + +A++ N S + A + N + A++
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 68 AEKTISLKPDWPKGYSRKGSALSYL----GRYKESISTYEEGLKLDPNN 112
+ I L PD L + E EE L+ P
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN------------- 60
L+ + + +AIE +A++ N L + +
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
Query: 61 ------YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
A+ +K + + S S + +Y+E+ +++ +
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369
Query: 115 MKEA 118
+
Sbjct: 370 KQLL 373
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 9e-07
Identities = 11/109 (10%), Positives = 35/109 (32%), Gaps = 19/109 (17%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
+ E + EA++ + + + + ++ +KA+E +K + P+ +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 83 SRKGSALS-------------------YLGRYKESISTYEEGLKLDPNN 112
+ G L +++ ++ + + N
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82
Q +AI + E +K++ + KE +K + A+ +S +
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKS----------REKEKMKDKLQKIAKMRLSKNGADSEAL 433
Query: 83 SRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ +++ E GL+
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLI 463
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + + + E +S +++ + E+A EK +
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166
Query: 74 LKPDWPKGYSRKGSALSYL---GRYKESISTYEEGLKLDPNN 112
KP P+ S A L + +I + ++L+P+N
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 19/123 (15%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEG 59
++ ++ A+E +A +L + + + + N + + G
Sbjct: 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108
Query: 60 NYEKALEDAEKTISLKPDWPKGYS--------RKGSALSYLG--RYKESISTYEEGLKLD 109
+K + + Y +G G + + + +E+ L+
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168
Query: 110 PNN 112
P N
Sbjct: 169 PKN 171
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 2e-18
Identities = 20/117 (17%), Positives = 40/117 (34%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I E+ +++G Y DA + + D +++ AC + +DL +
Sbjct: 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI 75
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+D + + L + ++A A EL A+ E E +
Sbjct: 76 HSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-13
Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 10/127 (7%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+ L Q+ + +A + LD + F A G Y+ A+
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN----------EQMKEAI 119
+ P+ L G E+ S +L N M EAI
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139
Query: 120 KDVRNQE 126
K + +
Sbjct: 140 KLKKEMK 146
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 4e-12
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
L Y+ +E+A + D D F + A +YD I Y
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS----EHRTPEIRTLISEMEKKIKEE 367
+ C + + A+ + E+ T +S M + IK +
Sbjct: 86 IXE---PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLK 142
Query: 368 EKKAY 372
++ +
Sbjct: 143 KEMKH 147
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-10
Identities = 14/98 (14%), Positives = 27/98 (27%)
Query: 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451
G + D + + A + ++ + LD + ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 452 KGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
G Q M Q AI +Y +D +C
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 12/90 (13%), Positives = 28/90 (31%)
Query: 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+ ++ + + + G YE A + L + +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNNEQM 115
G+ +G+Y +I +Y G +D +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-07
Identities = 14/87 (16%), Positives = 23/87 (26%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G + AI +YS +D + + + G +A L +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEE 104
P+ S L K E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 10/98 (10%), Positives = 28/98 (28%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+D + G G+Y A+ Y+ + +P++ + A C +
Sbjct: 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470
+L + ++ ++ +
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 4e-18
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + + G+A G Y E+I Y++ L+LDPNN
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 3e-15
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P++ + + N Y K +D ++ + L+LDP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ W G +AI+ Y+KALELD +NAEA
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 4e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 77 DWPKGYSRKGSALSYLG 93
+ + G+A G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 6e-11
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I Y++ L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 108 LDPNN 112
LDPNN
Sbjct: 72 LDPNN 76
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 7e-09
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ A+A +GN Y K D+ A Y++K
Sbjct: 75 NN---AEAWYNLGNAYYKQGDYDEAIEYYQK 102
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 2e-08
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
N+ Y+++ +YD+ IE Y + +E + A+A +GN Y K D+ A Y++K+
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 345 MSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404
+ +DP AE GN +K G Y +A++ Y +A
Sbjct: 70 LE--------------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 405 INRNPDDPKYYSNRAACYTKL 425
+ +P++ + N K
Sbjct: 104 LELDPNNAEAKQNLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 7e-08
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
GN +K G Y +A++ Y +A+ +P++ + + N Y K +D ++ + L+LDP
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 444 KFLKGWIRKGKILQ 457
+ G Q
Sbjct: 109 NNAEAKQNLGNAKQ 122
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 48.9 bits (118), Expect = 2e-07
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ + + N Y K +D ++ + L+LDP + W G +AI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 469 YEKALELDASNAEA 482
Y+KALELD +NAEA
Sbjct: 66 YQKALELDPNNAEA 79
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 48.5 bits (117), Expect = 3e-07
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 313 DFKLIAKALQRIGNCYKKM 331
+ A+A Q +GN +K
Sbjct: 109 NN---AEAKQNLGNAKQKQ 124
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 7e-18
Identities = 37/245 (15%), Positives = 73/245 (29%), Gaps = 30/245 (12%)
Query: 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQC 300
+ + + +L E + +++ +A A A++ DP + A +Y K D+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
Query: 301 IEQYIQKIENRADFKLIAKALQRIGNC-YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
E + Q + + D A+ G ++ + YF+K++
Sbjct: 62 QESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKAL-------------- 104
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419
Y P A +G K G++ A ++ P P + A
Sbjct: 105 --------ADPTYPTPYIANLN--KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154
Query: 420 ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
+ + G + A AYE +L A+
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK--ALGNAQAAYEYEAQLQANF 212
Query: 480 AEAVE 484
+ E
Sbjct: 213 PYSEE 217
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 8e-11
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
++ ++ +A + +A+K D N + + R+ + +KA E + +S+KPD
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 78 WPKGYSRKGSAL-SYLGRYKESISTYEEGLKLDPNNEQMKEA 118
+ + G L L R ES++ +++ L DP A
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIA 115
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 7e-10
Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 23 QANNFIEAIEAYSEAIK--LDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK 80
+ N E++ + +A+ T +I N+ AK+G + A +++++ +P +P
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ G+ ++ +++ +
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 2/109 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
KG + + F A ++ F + G A +K S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
+ + YE +L N +E + Q
Sbjct: 179 VLQADD--LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 8/63 (12%), Positives = 24/63 (38%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ + + +Y +A E + P + + YL ++ ++ + L +
Sbjct: 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72
Query: 110 PNN 112
P++
Sbjct: 73 PDS 75
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 8e-18
Identities = 13/104 (12%), Positives = 29/104 (27%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
I ++ + + G+ +A + + + Y AA Y F
Sbjct: 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
L G+ ++ KA + +E ++
Sbjct: 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-15
Identities = 11/105 (10%), Positives = 30/105 (28%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ EA + D N +A + + +++A + +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
L + G L ++ +E ++ + + +A
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 5e-15
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ Y K EEA + +D ++ + +AA+Y ++++ Q + Y
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365
+ + G C +++ AK FE + +++ I+
Sbjct: 101 KND---YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 16/155 (10%), Positives = 32/155 (20%), Gaps = 30/155 (19%)
Query: 293 ERKEYDQCIEQYIQKIENRADFKLI----AKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348
E + + I D I + + + A+V+F
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-- 64
Query: 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408
D + ++ A Y A
Sbjct: 65 ------------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
+D + C +L A + E ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 13/69 (18%), Positives = 21/69 (30%)
Query: 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDA 68
Y V + F +A + Y+ A L ++ + + KA E
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
Query: 69 EKTISLKPD 77
E I D
Sbjct: 128 ELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 11/165 (6%), Positives = 36/165 (21%), Gaps = 31/165 (18%)
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKA 320
+ + A + + A ++ + ++ +
Sbjct: 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---VDY 72
Query: 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380
+ + Y+ E ++ A + + + +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFA--------------------------LGKNDYTP 106
Query: 381 AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
G + A + + I + D+ +A Y
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK--IKAQSYLDA 149
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 9e-18
Identities = 13/104 (12%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88
E + N +L +A+ ++ AL + P + + G
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 89 LSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDVRNQE 126
L G + +E GL + ++++ ++ + ++
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-15
Identities = 19/87 (21%), Positives = 29/87 (33%)
Query: 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455
+ + + D+ Y + FD L L DP + W GK
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 456 LQGMQQQSKAIDAYEKALELDASNAEA 482
LQG ++ A A+E L S +
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-09
Identities = 9/108 (8%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323
+ + ++ + + Y E +++D + ++ + + A +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKW 58
Query: 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371
+G + D A+ +E ++ ++ + ++ E++ ++ ++
Sbjct: 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
LG + + F+ AL H A++FDPT + + + + + +
Sbjct: 25 LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84
Query: 310 NRADFKLIAKALQRIGNCYKKME 332
+R D + ++ + +++
Sbjct: 85 SRGD----QQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 62 EKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ E E ++ D G + ++ ++ L DP
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-17
Identities = 13/110 (11%), Positives = 24/110 (21%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
P + G + +P P+ +
Sbjct: 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ P+ + G L+ Q A AY +A +L
Sbjct: 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 9e-15
Identities = 14/97 (14%), Positives = 30/97 (30%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
+A L + A + L + + + + +A ++ P+
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
P G AL G+ + + + Y +L P
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 13/92 (14%), Positives = 29/92 (31%)
Query: 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450
+ + A+ P D + A + G + L L P +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
R G++ Q+ ++A ++A + +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 4e-13
Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 29/168 (17%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
+ L AV P D +A + + + +A+
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAV 60
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381
R+G + A V +++ P A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASD--------------------------AAPEHPGIA 94
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFD 429
G+ L G+ A YT A P++P + +L +
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 11/89 (12%), Positives = 31/89 (34%)
Query: 24 ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83
+ + A++ + + + + A G+ ++ ++L P P+ +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 84 RKGSALSYLGRYKESISTYEEGLKLDPNN 112
R G R+ E+ ++ P +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 6/92 (6%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
L + + + + P + V + ++ + + Q +
Sbjct: 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ +G+ + + A + ++
Sbjct: 89 EH---PGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ + L + +P + A +G + GL L P + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE 58
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 12/78 (15%), Positives = 21/78 (26%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G EA +A + + A G E A + L P+
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 78 WPKGYSRKGSALSYLGRY 95
P ++ + L +
Sbjct: 124 EPYITAQLLNWRRRLCDW 141
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + ++ EA +A + P + + + + Y + +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ ++ N +++ DW+ V +
Sbjct: 123 EE---PYITAQLLNWRRRLCDWRALDVLSAQ 150
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 4e-16
Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 26/171 (15%)
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
A + +E + + S+M + + A+ K GN LFK K
Sbjct: 146 MADLLYEVEVIGFDETKEGKARSDMTVEERIG---------AADRRKMDGNSLFKEEKLE 196
Query: 396 DAVKEYTEAINRNPDDPKY-----------------YSNRAACYTKLAAFDLGLKDCETC 438
+A+++Y AI DD + + N AAC KL +D + C
Sbjct: 197 EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256
Query: 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
L + K K R+GK + Q A D + KA + + R
Sbjct: 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 8e-13
Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 17/141 (12%)
Query: 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----------------- 45
++ + K GN+ + EA++ Y AI G +
Sbjct: 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN 230
Query: 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105
N +A K Y++A+ ++ + PK R+G A + LG+ + + +
Sbjct: 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Query: 106 LKLDPNNEQMKEAIKDVRNQE 126
K P+++ ++ ++ + QE
Sbjct: 291 QKYAPDDKAIRRELRALAEQE 311
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 4e-12
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 21/159 (13%)
Query: 230 KKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----- 284
K+ D + + +A + K GN +K++ EEA+ Y A+ + D FQ
Sbjct: 162 KEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKY 221
Query: 285 ------------NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332
NIAA + K YD+ I + KAL R G ++
Sbjct: 222 QDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELG 278
Query: 333 DWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKK 370
+A+ F K+ IR + + ++ K +K
Sbjct: 279 QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 5e-16
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
NA++ +E ++ + + EK + K E+G FK GKY
Sbjct: 238 NAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVK------------EKGTVYFKGGKYM 285
Query: 396 DAVKEYTEAIN----RNPDDPKY-----------YSNRAACYTKLAAFDLGLKDCETCLK 440
AV +Y + ++ K + N A CY KL + ++ C+ L
Sbjct: 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345
Query: 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
LD KG R+G+ M + A +EK LE++ N A C
Sbjct: 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 3e-12
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITF-------- 283
E + + ++ A KE G +K + +A+ Y K V + +
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 284 -------QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
N+A Y + +EY + +E + + + K L R G M ++++
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFES 369
Query: 337 AKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395
AK FEK + + R IS +KK KE ++ + + N +FK
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER---------DRRIYAN-MFKKFAEQ 419
Query: 396 DAVKEYTEAINRNPDDP 412
DA +E +A+ + +
Sbjct: 420 DAKEEANKAMGKKTSEG 436
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 5e-11
Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAI---------------KLDGTNHILFSNRSAAFAKE 58
+K+KG + +++A+ Y + + + F N + + K
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 59 GNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEA 118
Y KA+E +K + L KG R+G A + ++ + +E+ L+++P N+ +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 119 IKDVRNQE 126
I + +
Sbjct: 391 ISMCQKKA 398
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 21/140 (15%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAI----------------KLDGTN 44
++++ ++ LK+ GN ++ N+ AI+ Y++ + KL
Sbjct: 213 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA 272
Query: 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEE 104
N A K +++ A++ + + + P K R+ L Y ++++ ++
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
Query: 105 GLKLDPNNEQMKEAIKDVRN 124
++ P ++ ++ + V+
Sbjct: 333 AQEIAPEDKAIQAELLKVKQ 352
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALA 268
E D P P + A+ + K++ ++ K +GN +K +N+E A+
Sbjct: 186 EGDDWGIFPKDGSGDSHPDFPED-ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIK 244
Query: 269 HYNKAV----------------EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
Y K + + P ++ NI A + ++ ++ ++ +E
Sbjct: 245 KYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT-PEIRTLISEMEKKIKEE---E 368
KAL R ++ ++++ A +K+ I+ + ++++KIK + E
Sbjct: 305 S---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361
Query: 369 KKAY 372
K AY
Sbjct: 362 KAAY 365
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAIN---------RNPDDPKY-------YSNRAAC 421
+E+ K GN FK+ + A+K+YT+ + + D K N AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
K++ + + C L++DP K R+ + QG+++ +A+ +KA E+ +
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 52/272 (19%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFE 293
+ G + +A + A++ D+ + + YF
Sbjct: 39 SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY 98
Query: 294 RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347
+Y++ ++ + + +R AK+ +GN K M + A + E+ +
Sbjct: 99 LGDYNKAMQYHKHDLTLAKSMNDRLG---EAKSSGNLGNTLKVMGRFDEAAICCERHL-- 153
Query: 348 HRTPEIRTLISEMEKKIKEEEKKAYI------------DPVKAEEAKERGNELFKNGKYA 395
+ +++ + + + + G+++
Sbjct: 154 -----------TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV--KEALT 200
Query: 396 DAVKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KG 448
AV+ Y E + + N Y L F ++ + L++ +F +
Sbjct: 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260
Query: 449 WIRK-----GKILQGMQQQSKAIDAYEKALEL 475
R+ G + Q A + Y++ L L
Sbjct: 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 31/266 (11%), Positives = 74/266 (27%), Gaps = 68/266 (25%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN + ++ +A+ ++ + D N+ +D+ +
Sbjct: 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE------IR 354
++ +R +AL +GN Y + +
Sbjct: 152 HLTLARQLGDRLS---EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 355 TLISEMEKKIKEEEKKAY----IDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRN 408
L ++ + + + + + GN + G + A++ + E I R
Sbjct: 209 NL--KLMRDLGDRGAQGRACGNL-----------GNTYYLLGDFQAAIEHHQERLRIARE 255
Query: 409 PDDPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK------------ 452
D SN + L F+ + + L +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA---------LAVELGEREVEAQSC 306
Query: 453 ---GKILQGMQQQSKAIDAYEKALEL 475
G + + + AI+ + + L +
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAI 332
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE+A HY + + + ++ Y E++ IE + +
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++ +R A+A +GN + + + A Y E+
Sbjct: 329 HLAIAQELGDRIG---EARACWSLGNAHSAIGGHERALKYAEQH 369
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 75/247 (30%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQC 300
+ K+ A+ Y + ++ D N+ Y+ ++
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 301 IEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
IE + + + +RA +A +GN + + +++A ++++++
Sbjct: 243 IEHHQERLRIAREFGDRAA---ERRANSNLGNSHIFLGQFEDAAEHYKRTL--------- 290
Query: 355 TLISEMEKKIKEEEKKA----YIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRN 408
+ ++ E E +A + GN ++ A++ + I +
Sbjct: 291 ----ALAVELGEREVEAQSCYSL-----------GNTYTLLHEFNTAIEYHNRHLAIAQE 335
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
D A L G + +A+
Sbjct: 336 LGDR---IGEARACWSL---------------------------GNAHSAIGGHERALKY 365
Query: 469 YEKALEL 475
E+ L+L
Sbjct: 366 AEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 17/122 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAE 69
L +G A + + + AI+ + ++S A+ G+Y KA++ +
Sbjct: 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110
Query: 70 KTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
++L + K G+ L +GR+ E+ E L + + D
Sbjct: 111 HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-------TLARQLGDRL 163
Query: 124 NQ 125
++
Sbjct: 164 SE 165
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 59/212 (27%)
Query: 295 KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS--MSEHRTPE 352
+D +Q + + + L G D + +F+ +
Sbjct: 29 NSHDGNSQQG-SGSDGGSS---MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT 84
Query: 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPD 410
+ + S++ GN F G Y A++ + + ++ +
Sbjct: 85 LSAIYSQL------------------------GNAYFYLGDYNKAMQYHKHDLTLAKSMN 120
Query: 411 DPKY----YSNRAACYTKLAAFDLGLKDCETCLKLDPKF--------------------- 445
D N + FD CE L L +
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180
Query: 446 --LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
L + ++A++ Y++ L+L
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 12/107 (11%), Positives = 35/107 (32%), Gaps = 17/107 (15%)
Query: 29 EAIEAYSEAIKL------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKG- 81
++ + + + + G+ + + I + +
Sbjct: 26 GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85
Query: 82 ---YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125
YS+ G+A YLG Y +++ ++ L + +++ D +
Sbjct: 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDL-------TLAKSMNDRLGE 125
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-14
Identities = 14/99 (14%), Positives = 28/99 (28%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
E E G + K A+A + + P+ + + + + L +
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
LDPK + + A+ + L
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 7e-12
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+G + L+ N EA A+ + + + + A+ A+ L P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 77 DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQM 115
++ + + ++++ L P EQ+
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ K N +A E +P+ + + G + + +I LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 110 PNN 112
P +
Sbjct: 82 PKD 84
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 15/87 (17%), Positives = 29/87 (33%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+ + E +P + E + G +N K A+ A +P D ++
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKF 445
A +T + L L P++
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 10/97 (10%), Positives = 21/97 (21%), Gaps = 3/97 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G K N EA + + +P ++ E ++ I
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348
+ + + A +
Sbjct: 82 PKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + + A+ N A DP DI +A + + + + ++
Sbjct: 57 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Query: 313 DFK 315
++
Sbjct: 117 QYE 119
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 7e-14
Identities = 36/258 (13%), Positives = 80/258 (31%), Gaps = 51/258 (19%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEYDQCIEQYIQ-- 306
G K + ++ + AV+ D+ + + YF +Y + +E +
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
Query: 307 ----KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
I ++ AKA +GN K + ++ A V ++ + ++ +
Sbjct: 71 TLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHL-------------DISR 114
Query: 363 KIKEEEKKAYI------------DPVKAEEAKERGNELFKN-GKYADAVKEYTEA----- 404
++ ++ +A ++ G AV Y E
Sbjct: 115 ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174
Query: 405 -INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQ 457
+ + + N + L F + E L + +F + + G
Sbjct: 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234
Query: 458 GMQQQSKAIDAYEKALEL 475
+ + A + Y+K L L
Sbjct: 235 FLGEFETASEYYKKTLLL 252
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 39/270 (14%), Positives = 83/270 (30%), Gaps = 73/270 (27%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFE------------- 293
LGN NF+EA+ + ++ D N+ VY
Sbjct: 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148
Query: 294 -------RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
R ++ Y + + +RA +A +GN + + ++++A +
Sbjct: 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAA---QGRAFGNLGNTHYLLGNFRDAVIA 205
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADA 397
E+ + + K+ + KA E + GN G++ A
Sbjct: 206 HEQRL-------------LIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETA 242
Query: 398 VKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------ 445
+ Y + + + + + YT L ++ + L + +
Sbjct: 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
+ G + +A+ EK LE+
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 47/201 (23%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ + + + ++ D K ++ ++GN Y + D+ A Y
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKE 400
+ + + I + + EAK GN L G + +A+
Sbjct: 69 DL-------------TLARTIGD----------QLGEAKASGNLGNTLKVLGNFDEAIVC 105
Query: 401 YTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454
+N + + N Y +
Sbjct: 106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD--------------TGEF 151
Query: 455 ILQGMQQQSKAIDAYEKALEL 475
A+D YE+ L L
Sbjct: 152 PEDVRNALQAAVDLYEENLSL 172
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAE 69
L +G ++ + + + A+++ + ++S A+ +Y KALE
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 70 KTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
++L + K G+ L LG + E+I + L + + D
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-------DISRELNDKV 120
Query: 124 NQ 125
+
Sbjct: 121 GE 122
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 17/179 (9%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G A KK+++ AL ++ NI +Y K + + + + I
Sbjct: 12 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A A + G Y + E + A ++++ + R + + K +
Sbjct: 69 HL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVL 124
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA-ACYTKLAAFDL 430
+ K ++ A ++ A + + ++A C K ++
Sbjct: 125 YN---------IAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-13
Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS-LK 75
G N EA +A++ +I D + + R + + Y+ A++D ++ + L+
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Query: 76 PDWPKGYSR---------------KGSALSYLGRYKESISTYEEGLKLDPNNEQMK--EA 118
+ Y + +K++ + K +A
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162
Query: 119 IKDVRNQE 126
++ V Q+
Sbjct: 163 MECVWKQK 170
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
++G A ++ A++A+S + + + N + N +A + ++I+
Sbjct: 11 NEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM---NR 132
Y ++G +Y +I +E L N+ + I ++ + N
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127
Query: 133 GDPFANL 139
+A
Sbjct: 128 AFMYAKK 134
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
G + A+ ++ + N YT L K + D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479
+ ++G + ++ AI ++AL N
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 9e-12
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 75/231 (32%)
Query: 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321
+ EA++ +N+ V ++K++ ++ + + ++
Sbjct: 2 SLVEAISLWNEGVL---------------AADKKDWKGALDAFSAVQDPH------SRIC 40
Query: 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381
IG Y +++ A+ F +S+ + AY
Sbjct: 41 FNIGCMYTILKNMTEAEKAFTRSI-----------------NRDKHLAVAYFQ------- 76
Query: 382 KERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAACYTKL 425
RG ++ KY A+K+ EA+ + + + N A Y K
Sbjct: 77 --RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 134
Query: 426 AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD 476
+ + + + I KA++ K +
Sbjct: 135 EEWKKAEEQLALATSMKSEPRHSKID------------KAMECVWKQKLYE 173
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 45/175 (25%)
Query: 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384
G +DWK A F +++ + +
Sbjct: 13 GVLAADKKDWKGALDAFSA--------------------VQDPHSRICFN---------I 43
Query: 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDP 443
G +A K +T +INR+ Y R Y + +DL +KD + L L
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 444 KFLKGWIR---------------KGKILQGMQQQSKAIDAYEKALELDASNAEAV 483
L + + ++ KA + A + + +
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 158
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
+G KN EA + +++ D +Y++ ++YD I+ + +
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Query: 310 -NRAD--------FKLI-AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
N+ FKL + L I Y K E+WK A+ + S P S+
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR----HSK 158
Query: 360 MEKKIKEEEKKAYIDPV 376
++K ++ K+ +PV
Sbjct: 159 IDKAMECVWKQKLYEPV 175
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 39/269 (14%), Positives = 85/269 (31%), Gaps = 51/269 (18%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ----NNIAAVYFERKEY 297
+ S + G K + ++ + AV+ D+ + + YF +Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 298 DQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP 351
+ +E + I ++ AKA +GN K + ++ A V ++ +
Sbjct: 64 AKALEYHHHDLTLARTIGDQLG---EAKASGNLGNTLKVLGNFDEAIVCCQRHL------ 114
Query: 352 EIRTLISEMEKKIKEEEKKAYI------------DPVKAEEAKERGNELFKN-GKYADAV 398
++ +++ ++ +A ++ G + AV
Sbjct: 115 -------DISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167
Query: 399 KEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-KGWIR 451
Y E + + + N + L F + E L + +F K R
Sbjct: 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227
Query: 452 K-----GKILQGMQQQSKAIDAYEKALEL 475
+ G + + A + Y+K L L
Sbjct: 228 RAYSNLGNAYIFLGEFETASEYYKKTLLL 256
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVE-----FDPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE A +Y K + D ++ Y ++Y++ I+ +++
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
++ +R +A +GN Y + + A + EK + E+
Sbjct: 293 HLAIAQELNDRIG---EGRACWSLGNAYTALGNHDQAMHFAEKHL-------------EI 336
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406
+++ ++ + ++ G N E ++N
Sbjct: 337 SREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 30/271 (11%), Positives = 77/271 (28%), Gaps = 60/271 (22%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVY 291
+ + + A+ Y + + D N+ +
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197
Query: 292 FERKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+ + + + Q + ++A +A +GN Y + +++ A Y++K++
Sbjct: 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAA---ERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK---ERGNELFKNGKYADAVKEYT 402
+ +++K+ +A EA+ GN Y A+ +
Sbjct: 255 -------------LLARQLKD----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291
Query: 403 EA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK--------- 447
+ +N + + + YT L D + E L++ +
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARL 351
Query: 448 --GWIRK--GKILQGMQQQSKAIDAYEKALE 474
++ G + +L
Sbjct: 352 NLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 38/270 (14%), Positives = 82/270 (30%), Gaps = 73/270 (27%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFE------------- 293
LGN NF+EA+ + ++ D N+ VY
Sbjct: 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152
Query: 294 -------RKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVY 340
R ++ Y + + +RA +A +GN + + ++++A +
Sbjct: 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAA---QGRAFGNLGNTHYLLGNFRDAVIA 209
Query: 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN--ELFKN-GKYADA 397
E+ + + K+ + KA E + N + G++ A
Sbjct: 210 HEQRL-------------LIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETA 246
Query: 398 VKEYTEA------INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD------PKF 445
+ Y + + + + + YT L ++ + L +
Sbjct: 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
+ G + +A+ EK LE+
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 17/126 (13%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKAL 65
L +G ++ + + + A+++ + ++S A+ +Y KAL
Sbjct: 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 66 EDAEKTISL------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119
E ++L + K G+ L LG + E+I + L + +
Sbjct: 68 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL-------DISREL 120
Query: 120 KDVRNQ 125
D +
Sbjct: 121 NDKVGE 126
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN +++E+A+ ++ K + D ++ Y +DQ + +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332
Query: 307 ------KIENRAD----FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350
++ +++ ++ +G Y + + S++ R
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRP 386
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 6e-13
Identities = 74/513 (14%), Positives = 152/513 (29%), Gaps = 131/513 (25%)
Query: 94 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND-MNRGDP-------FANLFSDPN 144
+YK+ +S +E+ + + + +++ K + +E++ + D F L S
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 145 ----IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200
FV+ L FL P IK Q+ PS+MT + R
Sbjct: 77 EMVQKFVEEVLRI-NYKFLMSP-----IKTEQRQPSMMTRMYIEQR-------------- 116
Query: 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE-------- 252
+ + D Q + P K L + K
Sbjct: 117 --------DRLYNDNQVFAKYNVSRLQPYLK--------LRQALLELRPAKNVLIDGVLG 160
Query: 253 -----LGNEAYKKKNFEEALA---HY-NKAVEFDPTDI-----TFQNNIAAVYFERKEYD 298
+ + + + + N P + I + R ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 299 QCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV--YFEKSMSEHRTPEIRTL 356
I+ I I+ L +K + NC + + +NAK F + L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFN--------LSCKIL 269
Query: 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKE-YTEAINRNPDD-PKY 414
++ K++ D + A + D VK + ++ P D P
Sbjct: 270 LTTRFKQV--------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-- 319
Query: 415 YSNRAACYT---KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
R T +L+ ++D W + + I++
Sbjct: 320 ---REVLTTNPRRLSIIAESIRD-------GLATWDNWKH-----VNCDKLTTIIESSLN 364
Query: 472 ALELDASNAEAVEGYRQCSI-AVSSN-PEEVRKR---AMGDPEVQQILRDPAMRLILEQM 526
LE AE + + + S+ S++ P + + +V ++ ++E+
Sbjct: 365 VLE----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419
Query: 527 QNDPRALSDH-------LKNPEIASKIQKLVNS 552
Q +S +K + + +V+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 8e-11
Identities = 55/397 (13%), Positives = 120/397 (30%), Gaps = 122/397 (30%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE---R 294
K++ D +S ++E+ + K+ F T ++ Q + + E R
Sbjct: 36 KDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRL-----FW-TLLSKQEEMVQKFVEEVLR 88
Query: 295 KEYD--------QCI------EQYIQKIE--------------NRAD-FKLIAKALQRI- 324
Y + YI++ + +R + + +AL +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 325 ----------GNCYK-----------KMEDWKNAKVYFEKSMSEHRTPE-----IRTLIS 358
K K++ + K+++ ++ +PE ++ L+
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY 207
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+++ + ++ + L K+ Y + + + N + K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLNVQNAKA---- 258
Query: 419 AACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI---LQGMQQQSKAIDAYEKALEL 475
AF+L C+ L R ++ L ++D + L
Sbjct: 259 ------WNAFNLS---CKILLT---------TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 476 DASNAEAVEGYRQC-SIAVSSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALS 534
D E + P EV +P + +I E +++ A
Sbjct: 301 D----EVKSLLLKYLDCRPQDLPREVLT---TNP-----R---RLSIIAESIRDGL-ATW 344
Query: 535 DHLKNPEIASKIQKLVNSGLIVL-------AFIFLSI 564
D+ K+ K+ ++ S L VL F LS+
Sbjct: 345 DNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSV 380
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 55/427 (12%), Positives = 129/427 (30%), Gaps = 114/427 (26%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN 60
+E LQ L+Y++ + + + ++N I + ++ L ++
Sbjct: 199 LEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELR------RLLKSKP-------- 242
Query: 61 YEKAL------EDAE---------KTISLKPDWPKGYSRKGS---ALSYLGRYKESISTY 102
YE L ++A+ K + +R LS S+ +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLT--------TRFKQVTDFLSAATTTHISLDHH 294
Query: 103 EEGLKLDPNNEQMKEAIKDVRNQEMND----MNRGDPFA-NLFSDPNIFVQLQLDPRTKP 157
L D ++K + + D + +P ++ ++ ++ T
Sbjct: 295 SMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-----SIRDGLATWD 345
Query: 158 FLSDPSYVQMIKEIQK-----DPSLMTTKLKDPRMMTTLSVL-LGVNMSSTM-----GDG 206
+ ++ I+ +P+ LSV ++ + + D
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LSVFPPSAHIPTILLSLIWFDV 399
Query: 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266
++ V +K + ++ K + E NE ++
Sbjct: 400 IKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELKVKLE--NEYALHRSI--- 449
Query: 267 LAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI----QKIEN-------RA--- 312
+ HYN FD D+ DQ +I + IE+ R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYL-----------DQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNA----KVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
DF+ + + ++ + N K Y + + ++ P+ L++ + + + E
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDN-DPKYERLVNAILDFLPKIE 556
Query: 369 KKAYIDP 375
+
Sbjct: 557 ENLICSK 563
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 38/260 (14%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-------FDPTDITFQN 285
AE E ++D+ A+ ++ Y K ++ H +A++ + I
Sbjct: 127 AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342
IA Y + K YD+ + +E + + IA +L I N Y + D + A +F+
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
K+ +K+ + K L K G+ A +
Sbjct: 247 KA------------AKVSREKVPDLLPKVLF---------GLSWTLCKAGQTQKAFQFIE 285
Query: 403 EAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDPKFLKGWIRK-----GKI 455
E ++ K+Y + + + L + K L +I +
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ +A Y K L+
Sbjct: 346 FESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 29/252 (11%), Positives = 67/252 (26%), Gaps = 38/252 (15%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY 297
+ + D K + E +++ F++KEY
Sbjct: 63 QLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY-----YSLFFRGMYEFDQKEY 117
Query: 298 DQCIEQY---IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354
+ I Y +++ +D A+ ++ Y M+ + + +++
Sbjct: 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-------- 169
Query: 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA------INRN 408
I + ++ Y A+ A I +
Sbjct: 170 --IYQNHPLYSIRTIQSLFV---------IAGNYDDFKHYDKALPHLEAALELAMDIQND 218
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK-----GKILQGMQQQS 463
N A Y + + ++ + K+ + + + K L Q
Sbjct: 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ 278
Query: 464 KAIDAYEKALEL 475
KA E+ L+
Sbjct: 279 KAFQFIEEGLDH 290
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 38/260 (14%), Positives = 86/260 (33%), Gaps = 37/260 (14%)
Query: 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-------FDPTDITFQN 285
AE + + D A+ ++ Y K ++ + +A E ++ + +
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342
A + + K+Y+ I + + +L+ + L IG C +++A YF+
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248
Query: 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402
++++ + E E I +AY +K GK A + ++
Sbjct: 249 RAIA----------VFE-ESNILPSLPQAYFL---------ITQIHYKLGKIDKAHEYHS 288
Query: 403 EAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDPKFLKGWIRK-----GKI 455
+ + + Y + L + + L+ K L + K
Sbjct: 289 KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ KA + K ++
Sbjct: 349 YHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 14/121 (11%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
+ YK ++A +++K + + D ++ + ++Y ++ I+ +
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDF 328
Query: 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+E++ + + + Y + ++++ A YF K ++ + I+
Sbjct: 329 LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE-------------QVRQLIQGG 375
Query: 368 E 368
Sbjct: 376 V 376
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 26/244 (10%), Positives = 70/244 (28%), Gaps = 40/244 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDIT------FQNNIAAVYFERKEYDQCIEQY-- 304
L + + L+ ++ +T F +++EY I+ +
Sbjct: 69 LEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKK 128
Query: 305 -IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
K+ D A+ ++ Y M+ + Y ++ I + +
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------IYKEHEA 178
Query: 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPDDPKY----YSN 417
+ + +Y DA+ + +A + P+ N
Sbjct: 179 YNIRLLQCHSL---------FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229
Query: 418 RAACYTKLAAFDLGLKDCETCLKLD------PKFLKGWIRKGKILQGMQQQSKAIDAYEK 471
C + ++ + + + + P + + +I + + KA + + K
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289
Query: 472 ALEL 475
+
Sbjct: 290 GMAY 293
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 29 EAIEAYSEAIKLDGTNHILF---SNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85
+A+ Y +AI L + F G Y KA + P+
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
L LGRY++ + + + ++E ++
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-09
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 392 GKYADAVKEYTEAINRNPDDPKY---YSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448
G A AV Y +AI Y + + L + +K P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 449 WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ +L + + + ++ K + + S+ E ++ Y+Q
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIA-ETSDDETIQSYKQ 102
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 59 GNYEKALEDAEKTISLK---PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
G +A+ EK I+ D + Y GS LG Y+++ + G+K PN+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-06
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG+ + +A A V+ P + A V + Y+Q +E ++ I +
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 313 DFKLIA---KALQ 322
D + I +A+
Sbjct: 93 DDETIQSYKQAIL 105
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G+ + +A + +K + L + G YE+ +E K I+ D
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGL 106
+ YK++I Y + L
Sbjct: 94 DET-----------IQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
G+ G+Y A + + P+ A L ++ G++ +
Sbjct: 33 LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+ +Q +AI Y L
Sbjct: 93 DD-----------ETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 26/125 (20%)
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
Q + Y + I + K +A+ +G+ ++ + +++ A+ +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK--------- 55
Query: 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415
P L+ G+Y V+ + I DD
Sbjct: 56 -----------------QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98
Query: 416 SNRAA 420
S + A
Sbjct: 99 SYKQA 103
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 4e-12
Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 47/247 (19%)
Query: 257 AYKKKNFEEALAHYNKAVEFDPTDITFQ-----------NNIAAVYFERKEYDQCIEQYI 305
A + EA H KA ++ T A + K+ +Q + Y+
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL 60
Query: 306 QKIE---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362
Q+ E N AKA ++ G K ++ A Y EK+ +
Sbjct: 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG---------- 110
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK------YYS 416
P A A +R +L + + AV Y +A ++ +
Sbjct: 111 -----------TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIG 159
Query: 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFL------KGWIRKGKILQGMQQQSKAIDAYE 470
+ + FD + + + K I + + A
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
Query: 471 KALELDA 477
++ +
Sbjct: 220 ESYSIPG 226
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 11/127 (8%), Positives = 35/127 (27%), Gaps = 13/127 (10%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERK 295
+A G + + + +A+ Y +A + + + ++
Sbjct: 111 TPDTAAMALDRAG-KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169
Query: 296 EYDQCIEQYIQKIENRADFKL---IAKALQRIGNCYKKMEDWKNAKVYFEKSM---SEHR 349
++D+ ++ + + K D+ A+ +S
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSG 229
Query: 350 TPEIRTL 356
+ + L
Sbjct: 230 SEDCAAL 236
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDITFQNNIAAVYF 292
N +AK ++ G + EA+ + KA P + A
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 293 ERKEYDQCIEQYIQ---KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
E + + + Y Q EN + A+ + + + + + A +K S
Sbjct: 127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-11
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL------------DGTNHILFSNRSAAF 55
V L L A + EA A+++ G + + + A
Sbjct: 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 67
Query: 56 AKEGNYEKALEDAEKTIS-------LKPD----WPKGYSRKGSALSYLGRYKESISTYEE 104
A ++++AL A+K + L D W + AL LGR E++ +++
Sbjct: 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127
Query: 105 GLKLDPNNEQ 114
+++ +
Sbjct: 128 VVEMIEERKG 137
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-08
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY------------YSN 417
K + V A A G+Y +A A+ + P ++
Sbjct: 3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 62
Query: 418 RAACYTKLAAFDLGLKDCETCLK-------LDPKFLKGWI----RKGKILQGMQQQSKAI 466
A L +FD L + L L+ K WI + L G+ + ++A+
Sbjct: 63 LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 122
Query: 467 DAYEKALELDASNAEAVEGYRQCSIAVSSN 496
++K +E+ G +
Sbjct: 123 PEFKKVVEMIEERKGETPGKERMMEVAIDR 152
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 7e-04
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 23/142 (16%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------------DITFQNNIAAVYFER 294
A ++EA A+ +A+E T D +A
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 295 KEYDQCIEQYIQKIE--------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS-- 344
+ +D+ + + + N+ + KL A+ + A F+K
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 345 MSEHRTPEIRTLISEMEKKIKE 366
M E R E M + +
Sbjct: 131 MIEERKGETPGK-ERMMEVAID 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY---EKALEDAEKTISL 74
G L N++ ++ AY +A++L G N L++ + + + + +K ++L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ S Y ++I +++ + L+ + ++
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 3e-09
Identities = 18/129 (13%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Query: 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
E +++ + K +P +E+ G Y++++ Y +A+ ++ + Y+
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 419 AACYTKLA---AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
A A + L LD + + ++AI+ ++K ++L
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 476 DASNAEAVE 484
++ +
Sbjct: 145 NSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 7e-09
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
+ ++ ++ ++ + I NP + + ++ Y + L
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 438 CLKLDPKFLKGWIRKGKIL---QGMQQQSKAIDAYEKALELDASNAEA 482
L+L + + + +L ++ +KAL LD++ A
Sbjct: 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 17/113 (15%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKA 64
Q++ E +D + N ++A + I+ + N ++ + + +Y +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 65 LEDAEKTISLKPDWPKGYSRKGSALSYLGRYK---ESISTYEEGLKLDPNNEQ 114
L + + L+ + + Y+ + L Y ++ + ++ L LD N
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 14/67 (20%), Positives = 27/67 (40%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ FA + N E L+ + I P + ++ G + Y S+ Y + L+L
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Query: 110 PNNEQMK 116
N ++
Sbjct: 75 GENAELY 81
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 26/173 (15%)
Query: 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
+ +++++ ++ ++N E L + +P + + Y + +Y +
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 304 YIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363
Y +ALQ G + Y S+H T + R +I +
Sbjct: 67 Y-------------RQALQLRGENAELYAALATVLYY---QASQHMTAQTRAMIDKALA- 109
Query: 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416
+D + ++ F YA A++ + + ++ N
Sbjct: 110 ---------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486
+ ++ +P+ + W G+ S ++ AY +AL+L NAE
Sbjct: 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 59.7 bits (146), Expect = 2e-11
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 48 FSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ N A+ K+G+Y++A+E +K + L P+ + + G+A G Y E+I Y++ L+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 108 LDPNN 112
LDPNN
Sbjct: 72 LDPNN 76
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 57.4 bits (140), Expect = 1e-10
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
GNA + ++ EAIE Y +A++LD N + N A+ K+G+Y++A+E +K + L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 77 DWPKGYSRKGSALSYLG 93
+ + G+A G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 3e-07
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA 468
+ + + N Y K +D ++ + L+LDP + W G +AI+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 469 YEKALELDASNAEA 482
Y+KALELD +NAEA
Sbjct: 66 YQKALELDPNNAEA 79
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LGN YK+ +++EA+ +Y KA+E DP + N+ Y+++ +YD+ IE Y + +E
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 313 DFKLIAKALQRIGNCYKK 330
+ A+A Q +GN +K
Sbjct: 75 NN---AEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 38.1 bits (90), Expect = 6e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
GN +K G Y +A++ Y +A+ +P++ + N K
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-11
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN FE A +Y K + D ++ Y ++Y++ I+ +++
Sbjct: 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++++R +A +GN Y + + A + EK
Sbjct: 115 HLAIAQELKDRIG---EGRACWSLGNAYTALGNHDQAMHFAEKH 155
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-11
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ 306
LGN Y NF +A+ + + + D +N+ Y E++ E Y +
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74
Query: 307 ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
++++RA A++ +GN Y ++D++ A Y K
Sbjct: 75 TLLLARQLKDRAV---EAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 67/202 (33%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQ------KIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338
N+ ++ + + + Q + ++A A +GN Y + +++ A
Sbjct: 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---ERIAYSNLGNAYIFLGEFETAS 69
Query: 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN--ELFKN-GKYA 395
Y++K++ + +++K+ +A EA+ + + Y
Sbjct: 70 EYYKKTL-------------LLARQLKD----------RAVEAQSCYSLGNTYTLLQDYE 106
Query: 396 DAVKEYTEA--INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453
A+ + + I + D L G
Sbjct: 107 KAIDYHLKHLAIAQELKD---RIGEGRACWSL---------------------------G 136
Query: 454 KILQGMQQQSKAIDAYEKALEL 475
+ +A+ EK LE+
Sbjct: 137 NAYTALGNHDQAMHFAEKHLEI 158
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-11
Identities = 33/285 (11%), Positives = 81/285 (28%), Gaps = 49/285 (17%)
Query: 205 DGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFE 264
AE D+DP P + P + +++ D R+ + E E
Sbjct: 67 RDRAEWADIDPVPQNDGPNPVVQIIYSD---KFRDVYDYFRAVLQRDER---------SE 114
Query: 265 EALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIEQYIQKIENRADFKLIAKALQR 323
A A+E + + T + + +K+ + + IE + +
Sbjct: 115 RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---YQVWHH 171
Query: 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE 383
+ + D + ++ D +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILN--------------------------QDAKNYHAWQH 205
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLG------LKDCET 437
R + + + + ++ + + + + ++ R + ++ ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+KL P W ILQ K + + L+L S++
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSP 309
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 3e-08
Identities = 13/103 (12%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + + +E ++ + D N+ + +R + ++ L+ ++ +
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231
Query: 77 DWPKGYSRKGSALSYLGRY------KESISTYEEGLKLDPNNE 113
++++ +S Y + + E +KL P+NE
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 10/88 (11%), Positives = 29/88 (32%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
+ E + + I+ N+ ++ +R + + LE ++ +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 85 KGSALSYLGRYKESISTYEEGLKLDPNN 112
+ + + + ++ LK D N
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRN 233
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK-EGNYEKALEDAEKTISLK 75
+ A + +AI+L+ N+ ++ R + + + + I +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
P + + + + +L + + + L D N
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-Y 95
I ++ A ++ E+A + I L + + L L +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 96 KESISTYEEGLKLDPNNEQ 114
E ++ ++ P N Q
Sbjct: 149 HEEMNYITAIIEEQPKNYQ 167
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-11
Identities = 16/75 (21%), Positives = 31/75 (41%)
Query: 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAID 467
+P+DP A + K L E ++ DP ++ + GK+ + + + AID
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 468 AYEKALELDASNAEA 482
Y + +E+
Sbjct: 63 TYAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-10
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLD 109
+ K N +AL E+ + PD+ Y G L R ++I TY +G+++
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71
Query: 110 PNN 112
Sbjct: 72 REE 74
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-08
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--- 309
L E K N ALA + + VE DP + ++ +Y D I+ Y Q IE
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 310 NRADFKLIAKALQRIGNCYKKME 332
K L + + K E
Sbjct: 73 EEGT----QKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
L+ +N A+ + E ++ D + + + + + A++ + I + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 78 WPKGYSRK--GSALSYLGRYKESISTY 102
A + +
Sbjct: 74 EGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-05
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
DP D + +A + + + + + + +E D+ +G Y++++ +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDD 59
Query: 337 AKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKAY 372
A + + + + L SE++ + E +
Sbjct: 60 AIDTYAQGIEVAREEGTQKDL-SELQDAKLKAEGLEH 95
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 1e-10
Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 34/240 (14%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVE--FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI 308
+ + +A ++ + D T+ TF A++YF + D + Q
Sbjct: 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD 128
Query: 309 ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368
L A+ K++ A+ +K +
Sbjct: 129 S------LECMAMT--VQILLKLDRLDLARKELKKMQDQDE------------------- 161
Query: 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428
D + A + K DA + E ++ + +AAC+ +
Sbjct: 162 -----DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 429 DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ + L D + I + Q + + + + Y L+ + ++ YR
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 1e-09
Identities = 28/254 (11%), Positives = 68/254 (26%), Gaps = 14/254 (5%)
Query: 257 AYKKKNFEEALAHYNKAVEFDPT-DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315
A+ ++++ + + P D+ + Y +++Y ++ E +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD------EIKPSSA 62
Query: 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE-----MEKKIKEEEKK 370
+A++ ++ MS T + + + +
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 371 AYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL 430
E L K + A KE + +++ D A L
Sbjct: 123 TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL 182
Query: 431 G--LKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQ 488
+ L + + A ++AL+ D+ + E +
Sbjct: 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVV 242
Query: 489 CSIAVSSNPEEVRK 502
S + PE +
Sbjct: 243 LSQHLGKPPEVTNR 256
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-08
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
+ A +A + E +L + ++A +G +E A ++ +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLK-LDPNNEQMKE 117
P+ +LG+ E + Y LK ++ +KE
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-10
Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 16/105 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQ-NNIAAVYFERKEYDQCIEQYI 305
+G N++ A + + E DP + +A V + ++Y
Sbjct: 72 VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYE 131
Query: 306 Q------KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + +++ IA A + +G+ ++ ++ A+ ++ ++
Sbjct: 132 KSLVYAQQADDQVA---IACAFRGLGDLAQQEKNLLEAQQHWLRA 173
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 31/225 (13%), Positives = 62/225 (27%), Gaps = 66/225 (29%)
Query: 265 EALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQYIQ------KIENRA 312
EA + + P + + VY +D+ + K +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
+AL ++G + +W A+ F + E+ + E+ A
Sbjct: 64 A---EHRALHQVGMVERMAGNWDAARRCFLEER-------------ELLASLPEDPLAA- 106
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEA--INRNPDDPKYYSNRAACYTKLAAFDL 430
+ A E G A A +EY ++ + DD A + L
Sbjct: 107 -----SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV---AIACAFRGL----- 153
Query: 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475
G + Q + +A + +A ++
Sbjct: 154 ----------------------GDLAQQEKNLLEAQQHWLRARDI 176
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 14/104 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-----DPTDI-TFQNNIAAVYFERKEYDQCIEQY-- 304
LG F+EA A + + D T + + V +D +
Sbjct: 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 305 ----IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344
+ + + + D A+ +EKS
Sbjct: 92 ERELLASLPEDP--LAASANAYEVATVALHFGDLAGARQEYEKS 133
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNH-ILFSNRSAAFAKEGNYEKALEDAEKTISL 74
+ + A++A E ++ + + A+ K G+++KAL + + I L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 75 KPDWPKGYSRK 85
PD P +RK
Sbjct: 65 NPDSPALQARK 75
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-09
Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 50 NRSAAFAKEGNYEKALEDAEKTISLKP-DWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108
+G+ E AL+ E+ + +P + Y G+A LG ++++++ Y+ ++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 109 DPNNE-----QMKEAIKDVRNQEM 127
+P++ +M I + N++M
Sbjct: 65 NPDSPALQARKMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 383 ERGNELFKNGKYADAVKEYTEAINRNPDDP-KYYSNRAACYTKLAAFDLGLKDCETCLKL 441
+ EL G +A++ E + P + Y Y KL + L + ++ ++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKAL 473
+P LQ + ++ Y K +
Sbjct: 65 NPDS--------PALQARKMVMDILNFYNKDM 88
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTD-ITFQNNIAAVYFERKEYDQCIEQYIQKIEN 310
+ E + + E AL + ++ +P + Y + ++ + + Y IE
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 311 RADFKLIA--KALQRIGNCYKK 330
D + K + I N Y K
Sbjct: 65 NPDSPALQARKMVMDILNFYNK 86
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 9e-04
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 373 IDPVKAEEA-KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
+PV +EA GN K G + A+ Y AI NPD P + +
Sbjct: 29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 2e-08
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 21 ALQANNFIEAIEAYSEAIKLDGTNH--ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW 78
L + L N+ I++ ++ + +G +++ + I L+ W
Sbjct: 251 PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW 310
Query: 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
Y G G +E+ Y L P
Sbjct: 311 -LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454
+ + + + Y +A D + T + L+ +L ++ GK
Sbjct: 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGK 318
Query: 455 ILQGMQQQSKAIDAYEKALELDASNA 480
+ + +A DAY A L
Sbjct: 319 VYEMKGMNREAADAYLTAFNLRPGAN 344
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 20/165 (12%), Positives = 32/165 (19%), Gaps = 34/165 (20%)
Query: 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQC-------IEQYIQKIENRAD 313
K+ A + V+ P + A V R + I I +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
++ Q + + E Y+
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGID------------------LEMSWLNYV 314
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418
G G +A Y A N P Y
Sbjct: 315 L---------LGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAF--------AKEGNYEKALEDAEKTISL 74
+ A E E ++ + ++ E + + ++L
Sbjct: 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270
Query: 75 K--PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPN 111
+ Y K + G+ ES G+ L+ +
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
K +AL E+ +A + I L+ + + + + +G +A + +L+P
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341
Query: 77 D-----WPKG---YSRKGSALSYLGRYKES 98
W + + + YL ++ S
Sbjct: 342 GANTLYWIENGIFQTSVPYVVPYLDKFLAS 371
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 27/251 (10%), Positives = 68/251 (27%), Gaps = 44/251 (17%)
Query: 251 KELGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ +K A + KA ++ + + ++
Sbjct: 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100
Query: 305 IQKIE---NRADFKLIAKALQRIGNCY-KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
I+ +R F+ A +G + D+ A +E + + + L ++
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP-------K 413
K + +G+Y +A Y++ I + +
Sbjct: 161 FIKC--------------------ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200
Query: 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK--GKILQGMQQQ-----SKAI 466
Y+ + C + + DP F ++ + + S+
Sbjct: 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHC 260
Query: 467 DAYEKALELDA 477
++ + LD
Sbjct: 261 KEFDNFMRLDK 271
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 8e-05
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 10/120 (8%)
Query: 238 KNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------NNIAAVY 291
K +E + E N A+ A++ F+ + +
Sbjct: 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127
Query: 292 -FERKEYDQCIEQYIQ---KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347
+ +Y + I+ Y L K + + + A + K +
Sbjct: 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-07
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 4/125 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY---IQKI 308
E G FE+ L + + D+ + N A + Y++ + Q I+
Sbjct: 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226
Query: 309 ENRADFKLIAKALQRIGNCYKKME-DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
LI + + G C +K+E + + ++K+ E+ + KI
Sbjct: 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286
Query: 368 EKKAY 372
E +
Sbjct: 287 EHHHH 291
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 21/188 (11%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAA 289
+++ + Q+ + + + KK ++E + K + T + +N IA
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 290 VYFERKEYDQCIEQYIQKIEN----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+Y E + I+ + Q ++ + + K ++ + K++
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 346 -------SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398
S ++ E +K++ EE + KA ++ + Y +A+
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF----DILEMHAYKEAL 279
Query: 399 KEYTEAIN 406
+
Sbjct: 280 VNKISRLE 287
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-06
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 21/126 (16%)
Query: 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF----------DLGLKDCETCLKLDP 443
+ ++ NP D + +L+ F + E L +DP
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 444 KFLKGWIRKGKILQGM-----------QQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492
K + G A +++A++ N ++ + A
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137
Query: 493 VSSNPE 498
+ E
Sbjct: 138 PQLHAE 143
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 5e-06
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445
G+ A++ EAI +P D S+ F+ + +KL P++
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 446 LKGWIRKGKILQGMQQQSKAIDAYEKAL---ELDASNAEAVEGYRQCSIAVSSNPEEVRK 502
L G + +++ Q + A E + V E+
Sbjct: 65 LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 124
Query: 503 RAMGDPE 509
+ +
Sbjct: 125 QIEELRQ 131
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNN----IAAVYFERKEYDQCIE 302
A+ + +A K +++A + +E P + N + Y+ + +
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEA 60
Query: 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
Q+ + A L ++G A+ ++
Sbjct: 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQ 101
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 253 LGNEAYKKKNFEEALAHYNKAV---------EFDPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K+ F++A Y + + D + + + +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260
Query: 304 YIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+A D + L+ +G Y++ ++ A+ E +M
Sbjct: 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF-------DPTDI-TFQNNIAAVYFERKEYDQCIEQY 304
L K+ ++EA +A+E D D+ NN+A + + +Y++ Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Query: 305 IQKIENRADFKL------IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349
+ +E KL +AK + +CY K +K A+ +++ ++
Sbjct: 177 QRALEIYQT-KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 37/260 (14%), Positives = 77/260 (29%), Gaps = 64/260 (24%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
L + +++A N A+ P NN+A +Y +R +Y +
Sbjct: 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134
Query: 305 IQKIENR-----ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ +E R D +AK L + + ++ + Y+++++ E
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-------------E 181
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---------NPD 410
+ + + DP A+ + K GK+ A Y E + R + +
Sbjct: 182 IYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236
Query: 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK---------------GKI 455
+ + + G E GW + G +
Sbjct: 237 NKPIWMHAEEREECKGKQKDGTSFGE---------YGGWYKACKVDSPTVTTTLKNLGAL 287
Query: 456 LQGMQQQSKAIDAYEKALEL 475
+ + A E A+
Sbjct: 288 YRRQGKFEAAETLEEAAMRS 307
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 19/125 (15%), Positives = 39/125 (31%)
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
+ E+ ++ +EL + G++A A+ + +A C + F+L +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493
T + L +S + E+ L + N E V
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 494 SSNPE 498
+ E
Sbjct: 122 GRDEE 126
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/108 (8%), Positives = 30/108 (27%), Gaps = 18/108 (16%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF---------DPTDITFQNNIAAVYFERKEYDQCIEQ 303
L + K+ +++A Y + + + + + + +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234
Query: 304 YIQKIENRA------DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+A + L+ +G Y++ + A + +
Sbjct: 235 GEYGSWYKACKVDSPT---VNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 48/252 (19%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ + A+ +A+E P T N +A VY ++ +Y +
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL 66
Query: 305 IQKIENR-----ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359
+ R D +A L + Y K +K A+ ++++ E
Sbjct: 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-------------E 113
Query: 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-----PDDP-- 412
+ +K+ + P A++ GK + Y A+ PDDP
Sbjct: 114 IREKVLGKF-----HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168
Query: 413 -KYYSNRAACYTKLAAFDLGLKDCETCLKL---------DPKFLKGWIRKGKILQGMQQQ 462
K +N A+CY K + + L + W+ + + ++
Sbjct: 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228
Query: 463 SKAIDAYEKALE 474
+ E
Sbjct: 229 RDSAPYGEYGSW 240
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 40/194 (20%)
Query: 253 LGNEAYKKK-NFEEALAHYNKAVEFD--------PTDITFQNNIAAVYFERKEYDQCIEQ 303
L Y K+ ++EA +A+E P NN+A + + + ++
Sbjct: 91 LAV-LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149
Query: 304 YIQKIENRADFKL------IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
Y + +E A +L +AK + +CY K +++A+ +++ ++
Sbjct: 150 YRRALEIYAT-RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH-------- 200
Query: 358 SEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN---PDDPKY 414
EK+ + K D+ D P
Sbjct: 201 ---EKEFGSV------NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251
Query: 415 ---YSNRAACYTKL 425
+ A Y +
Sbjct: 252 NTTLRSLGALYRRQ 265
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 100.0 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.97 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.96 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.96 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.96 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.96 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.95 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.95 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.94 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.94 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.93 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.93 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.93 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.93 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.91 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.9 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.9 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.9 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.89 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.87 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.87 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.84 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.83 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.82 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.81 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.72 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.7 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.67 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.66 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.64 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.64 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.59 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.58 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.56 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.56 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.52 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.5 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.42 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.37 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.25 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.12 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.02 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.97 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.89 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.79 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.77 | |
| 2llw_A | 71 | Heat shock protein STI1; DP domain, alpha helix, c | 98.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.58 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.27 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.22 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.22 | |
| 2lnm_A | 62 | Protein TIC 40, chloroplastic; translocon, import, | 98.17 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.93 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.92 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.68 | |
| 2llv_A | 71 | Heat shock protein STI1; DP domain, alpha helix, c | 97.57 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.49 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.12 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.43 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.23 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.22 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.65 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.56 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.51 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.47 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.43 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.39 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.39 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.24 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.09 | |
| 2llv_A | 71 | Heat shock protein STI1; DP domain, alpha helix, c | 94.28 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.09 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.02 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.64 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.17 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.12 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.82 | |
| 2lnm_A | 62 | Protein TIC 40, chloroplastic; translocon, import, | 85.02 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.77 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=349.10 Aligned_cols=378 Identities=17% Similarity=0.182 Sum_probs=322.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+++|+..|+++++++|++..++..++.++...++...+...+.+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------------------- 128 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------------------------------- 128 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999999999999998877443332222111111
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
...|+....+..+|
T Consensus 129 ------------------------------------------------------------------~~~p~~~~~~~~l~ 142 (388)
T 1w3b_A 129 ------------------------------------------------------------------QYNPDLYCVRSDLG 142 (388)
T ss_dssp ------------------------------------------------------------------HHCTTCTHHHHHHH
T ss_pred ------------------------------------------------------------------HhCCCcHHHHHHHH
Confidence 11224456778899
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---LDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHHhcccCCH--------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 335 KNAKVYFEKSMSEHRTP--------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
++|+..|++++...|.. .++...+++++|+..+++++..+|..+.++..+|.++...|++++|+..|+++++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999977652 2344556777888888888888888888888888888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++++|+++.++.++
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcC
Q psy3014 487 RQCSIAVSS 495 (570)
Q Consensus 487 ~~~~~~~~~ 495 (570)
+.++..+|+
T Consensus 380 g~~~~~~~~ 388 (388)
T 1w3b_A 380 GNTLKEMQD 388 (388)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHccC
Confidence 888777663
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=310.49 Aligned_cols=335 Identities=19% Similarity=0.312 Sum_probs=312.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
+++.++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDP---NNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
...|++++|+..|+++++.+| ++..++..++.+...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------------------- 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM----------------------------------------- 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------------------------------------
Confidence 999999999999999999999 888887766655433
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
T Consensus 121 -------------------------------------------------------------------------------- 120 (359)
T 3ieg_A 121 -------------------------------------------------------------------------------- 120 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+|.
T Consensus 121 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 196 (359)
T 3ieg_A 121 -QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKIST 196 (359)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH------------HHHHHHHHHHCCCH
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE------------AKERGNELFKNGKY 394 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (570)
++...|++++|+..+++++.. .|....+ ...+|.++...|++
T Consensus 197 ~~~~~~~~~~A~~~~~~a~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 197 LYYQLGDHELSLSEVRECLKL--------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999994 4444433 34568899999999
Q ss_pred HHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
++|+..++++++..|+++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|+
T Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999874 466799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++++|+++.++..++.+...+++
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999887763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=321.04 Aligned_cols=355 Identities=17% Similarity=0.221 Sum_probs=323.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|.++..+..+|.+++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++.
T Consensus 26 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS 163 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (570)
.+|.++...|++++|+..|+++++.+|++..++..++.++...++...+...+.+
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------------- 160 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK------------------------- 160 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999888763222111111111
Q ss_pred HHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchh
Q psy3014 164 YVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDE 243 (570)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (570)
.+...
T Consensus 161 ---------------------------------------------------------------------------al~~~ 165 (388)
T 1w3b_A 161 ---------------------------------------------------------------------------AIETQ 165 (388)
T ss_dssp ---------------------------------------------------------------------------HHHHC
T ss_pred ---------------------------------------------------------------------------HHHhC
Confidence 11112
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++ ..++..
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 242 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGN 242 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC---HHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
+|.++...|++++|+..|++++...|. ...+...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999998876 234556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+|+..|+++++..|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999988874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=319.09 Aligned_cols=342 Identities=18% Similarity=0.297 Sum_probs=314.8
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+...|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 97 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR 97 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCC
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL 159 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (570)
..+|.++...|++++|+..|+++++.+|++. .++..++.++..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------- 143 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------------------------------- 143 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999998 777766555433
Q ss_pred CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy3014 160 SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKN 239 (570)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (450)
T 2y4t_A 144 -------------------------------------------------------------------------------- 143 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 240 LTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 240 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|++ ..
T Consensus 144 --------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 212 (450)
T 2y4t_A 144 --------QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TE 212 (450)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHH------------HHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE------------RGNE 387 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~~~ 387 (570)
++..+|.++...|++++|+..|++++. ..|.....+.. +|.+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLK--------------------------LDQDHKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 45555554444 4999
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHH
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPK----YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 463 (570)
+...|++++|+.+|+++++..|+++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 346 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999854 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 464 KAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+|+.+|+++++++|+++.++..++.+....++
T Consensus 347 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 347 EAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999987766553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=321.80 Aligned_cols=409 Identities=19% Similarity=0.219 Sum_probs=297.2
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
...++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 45789999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc---cCCCcccc---------------------ccCCCc
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND---MNRGDPFA---------------------NLFSDP 143 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~---------------------~~~~~~ 143 (570)
++..+|++++|+..|++++..+|.+................. ......+. ......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999999986654332222211110110 11110000 000000
Q ss_pred hHHH----H--hhhCCCCCCCC-----------------CChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 144 NIFV----Q--LQLDPRTKPFL-----------------SDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 144 ~~~~----~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
.... . ........... ....+..++..+. ........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--------------------~~~~~~~~ 221 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT--------------------KAARLFEE 221 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--------------------HHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--------------------HHHHHhhh
Confidence 0000 0 00000000000 0111111111111 11110000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
. ...........|..+.++..+|.++...|++++|+..|++++..+|.
T Consensus 222 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~- 269 (514)
T 2gw1_A 222 Q-------------------------------LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR- 269 (514)
T ss_dssp H-------------------------------TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-
T ss_pred h-------------------------------hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-
Confidence 0 00000001123678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
+.++..+|.++...|++++|+..+++++...|++ ..++..+|.++...|++++|+..+++++.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------- 332 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKE-------------- 332 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------
Confidence 9999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++.
T Consensus 333 ------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 333 ------------LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp ------------TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCHH------HHHHHHHHHHh---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 441 LDPKFLK------GWIRKGKILQG---MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 441 ~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
..|+++. ++..+|.++.. .|++++|+..|+++++.+|+++.++..++.++...|+..+
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 7666644 67777777777 7777777777777777777777777777777777776443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=316.37 Aligned_cols=376 Identities=23% Similarity=0.294 Sum_probs=283.3
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
....++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++.+++.+|
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHH-------------------------------------------------
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKE------------------------------------------------- 117 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------------- 117 (570)
.++...|++++|+..|+ ++..+|+....+.
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999995 8888777544321
Q ss_pred -------------------HHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhH
Q psy3014 118 -------------------AIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM 178 (570)
Q Consensus 118 -------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
.+..++.... ..+.... ..+..++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~a~---------------------~~~~~A~~~~------- 225 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD------EGYLVAN---------------------DLLTKSTDMY------- 225 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH------HHHHHHH---------------------HHHHHHHHHH-------
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh------hhhHHHH---------------------HHHHHHHHHH-------
Confidence 1111100000 0000000 0111111111
Q ss_pred HhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q psy3014 179 TTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAY 258 (570)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 258 (570)
...+.... .........+.++..+|.++.
T Consensus 226 -------------~~~l~~~p--------------------------------------~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 226 -------------HSLLSANT--------------------------------------VDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp -------------HHHHC--C--------------------------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHCC--------------------------------------CcchhhHHHHHHHHHHHHHHH
Confidence 11110000 000112245678899999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
..|++++|+..|++++..+|+ +.++..+|.++...|++++|+..++++++.+|++ +.++..+|.++...|++++|+
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNR 418 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 418 (570)
..|++++. .+|.++.++..+|.++...|++++|+..|+++++..|+++.++..+
T Consensus 331 ~~~~~a~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 384 (537)
T 3fp2_A 331 EDFQKAQS--------------------------LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHH--------------------------HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999 5666667777777777777777777777777777777777777777
Q ss_pred HHHHHHhcChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhC----------CCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 419 AACYTKLAAFDLGLKDCETCLKLDPKFLK------GWIRKGKILQGM----------QQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 419 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
|.++...|++++|+..|++++...|++.. .++.+|.++... |++++|+.+|+++++.+|+++.+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777777777777777776654432 244556667666 77777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHH
Q psy3014 483 VEGYRQCSIAVSSNPE 498 (570)
Q Consensus 483 ~~~l~~~~~~~~~~~e 498 (570)
+..++.++..+|+..+
T Consensus 465 ~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhccHHH
Confidence 7777777777777443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=313.82 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.++.++..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|++ ..++..+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 379 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK---AVTWLAV 379 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---HHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc---HHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
|.+|...|++++|+..|++++...|. ...+...|++++|+..+++++...|.+..++..+|.++...|++++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999987766 2345666789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------DPKF-LKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
|+..|+++++..|.++.+|..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..|
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 6664 789999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 470 EKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 470 ~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
+++++++|+++.++..++.++...|+..++
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999986553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=315.25 Aligned_cols=354 Identities=16% Similarity=0.110 Sum_probs=309.9
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch------------------------------------
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR------------------------------------ 51 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------ 51 (570)
+.++..+..+|..+...|++++|+..|+++++.+|++..++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 45689999999999999999999999999999999988776655
Q ss_pred --hHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 52 --SAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 52 --a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
+.+|.+.|++++|+..|++++.. |.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...++.
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 45566889999999999999988 788999999999999999999999999999999999988888888877663222
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
..+...+ ....
T Consensus 356 ~~A~~~~-------------------------------------------------------~~~~-------------- 366 (597)
T 2xpi_A 356 NKLYLIS-------------------------------------------------------NDLV-------------- 366 (597)
T ss_dssp HHHHHHH-------------------------------------------------------HHHH--------------
T ss_pred HHHHHHH-------------------------------------------------------HHHH--------------
Confidence 1111100 0000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
...|.++.++..+|.++...|++++|+.+|+++++.+|.+..+|..+|.
T Consensus 367 -------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 367 -------------------------------DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp -------------------------------HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -------------------------------hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0112446777888999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
++...|++++|+..|+++++..|++ ..++..+|.+|...|++++|+..|++++.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------- 469 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYA----------------------- 469 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Confidence 9999999999999999999888887 78888899999999999999999998888
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR------NPDD-PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
..|.++.++..+|.++...|++++|+..|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+
T Consensus 470 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 ---LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp ---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 78889999999999999999999999999999988 6654 7899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
|+++.++..+|.+|...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=304.62 Aligned_cols=350 Identities=14% Similarity=0.137 Sum_probs=310.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC------------
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD------------ 77 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 77 (570)
++..+..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++...|.
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -------------------------------------------------------------------ChhHHhHHHHHHh
Q psy3014 78 -------------------------------------------------------------------WPKGYSRKGSALS 90 (570)
Q Consensus 78 -------------------------------------------------------------------~~~~~~~la~~~~ 90 (570)
+..+++.+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2667788888887
Q ss_pred h---ccCHHHHHHHHHHhhc-----c--CCC-------cHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCC
Q psy3014 91 Y---LGRYKESISTYEEGLK-----L--DPN-------NEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDP 153 (570)
Q Consensus 91 ~---~g~~~~A~~~~~~al~-----~--~p~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (570)
. .|++++|+..|+++++ + +|+ +..++..++.++...++..
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 254 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL----------------------- 254 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH-----------------------
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH-----------------------
Confidence 6 8999999999999999 6 444 4556667777666522211
Q ss_pred CCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 154 RTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPA 233 (570)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (570)
.++..+.. .
T Consensus 255 ------------~A~~~~~~--------------------~--------------------------------------- 263 (514)
T 2gw1_A 255 ------------GAHEDIKK--------------------A--------------------------------------- 263 (514)
T ss_dssp ------------HHHHHHHH--------------------H---------------------------------------
T ss_pred ------------HHHHHHHH--------------------H---------------------------------------
Confidence 11111110 0
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
+...|. +.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|+
T Consensus 264 ------l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 336 (514)
T 2gw1_A 264 ------IELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336 (514)
T ss_dssp ------HHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS
T ss_pred ------HhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh
Confidence 011123 6778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
+ ..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|+
T Consensus 337 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 337 N---IFPYIQLACLAYRENKFDDCETLFSEAKR--------------------------KFPEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp C---SHHHHHHHHHTTTTTCHHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHHHHTTC
T ss_pred h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HcccCHHHHHHHHHHHHHCCC
Confidence 8 88999999999999999999999999998 788888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPK------YYSNRAACYTK---LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
+++|+.+|++++...|+++. ++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999888755 99999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 465 AIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
|+.+|+++++++|+++.++..+...
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999998877544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=273.86 Aligned_cols=298 Identities=18% Similarity=0.142 Sum_probs=225.9
Q ss_pred HHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 35 SEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 35 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
...+...|+++..+..+|.+++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 34455566677777777777777777777777777777777777777777777777777777777777777777776554
Q ss_pred HHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHH
Q psy3014 115 MKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVL 194 (570)
Q Consensus 115 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (570)
++.
T Consensus 92 ~~~----------------------------------------------------------------------------- 94 (330)
T 3hym_B 92 SWF----------------------------------------------------------------------------- 94 (330)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 433
Q ss_pred hcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHH
Q psy3014 195 LGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK-NFEEALAHYNKA 273 (570)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a 273 (570)
.+|.++...| ++++|+.+|+++
T Consensus 95 ---------------------------------------------------------~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 95 ---------------------------------------------------------AVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp ---------------------------------------------------------HHHHHHHHSCSCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHhhhhHHHHHHHHHHH
Confidence 3555566677 777777777777
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHH
Q psy3014 274 VEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 274 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 353 (570)
+..+|.++.++..+|.++...|++++|+..++++++..|+. ..++..+|.++...|++++|+..+++++.
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~------- 187 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALS------- 187 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 77777777777788888888888888888888887777776 66677778888888888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHH
Q psy3014 354 RTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN---------PDDPKYYSNRAACYTK 424 (570)
Q Consensus 354 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~ 424 (570)
..|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++..
T Consensus 188 -------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 188 -------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp -------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred -------------------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888888887765 5566788888888888
Q ss_pred hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhcC
Q psy3014 425 LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI-AVSS 495 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~ 495 (570)
.|++++|+..+++++..+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..++.++. ..|+
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 8888888888888888888888888888888888888888888888888888888888888888774 4443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=274.14 Aligned_cols=306 Identities=13% Similarity=0.097 Sum_probs=276.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...+.+++.++.+|..++..|+|++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.+++
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCCh
Q psy3014 84 RKGSALSYLG-RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP 162 (570)
Q Consensus 84 ~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (570)
.+|.++...| ++++|+..|+++++.+|++..++.
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------------------------------------- 129 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI--------------------------------------------- 129 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHH---------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHH---------------------------------------------
Confidence 9999999999 999999999999999997765543
Q ss_pred HHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccch
Q psy3014 163 SYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTD 242 (570)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (570)
T Consensus 130 -------------------------------------------------------------------------------- 129 (330)
T 3hym_B 130 -------------------------------------------------------------------------------- 129 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..++++++..|++ ..++.
T Consensus 130 ---------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~ 197 (330)
T 3hym_B 130 ---------AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED---PFVMH 197 (330)
T ss_dssp ---------HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---HHHHH
T ss_pred ---------HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC---hHHHH
Confidence 467777789999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...|++++|+..+++++...+.... ....|..+.++..+|.++...|++++|+.+|+
T Consensus 198 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-----------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999984321100 00115667899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL-QGMQQQS 463 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~ 463 (570)
++++..|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999999998 5666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=292.25 Aligned_cols=373 Identities=12% Similarity=0.046 Sum_probs=260.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCcchhhchhHHHhcccCHHHHHHHHhchhccC---
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL---------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK--- 75 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 75 (570)
+..+..+..+|.++...|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344677889999999999999999999999986 56666788999999999999999999999998763
Q ss_pred -----CCChhHHhHHHHHHhhc--cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHH
Q psy3014 76 -----PDWPKGYSRKGSALSYL--GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 148 (570)
Q Consensus 76 -----p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+.............+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~----------- 196 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID----------- 196 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH-----------
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH-----------
Confidence 34567888888777665 579999999999999999999999988887665222211111000
Q ss_pred hhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 149 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
...
T Consensus 197 -----------------~~~------------------------------------------------------------ 199 (472)
T 4g1t_A 197 -----------------PLR------------------------------------------------------------ 199 (472)
T ss_dssp -----------------HHH------------------------------------------------------------
T ss_pred -----------------HHH------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAY----KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 304 (570)
+.+..+|..+.++..+|..+. ..|++++|+.++++++..+|.++.++..+|.++...|++++|+..+
T Consensus 200 ---------~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 200 ---------QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp ---------HHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------HHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 011112234555556665544 4577889999999999999999999999999999999999999999
Q ss_pred HHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy3014 305 IQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKER 384 (570)
Q Consensus 305 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (570)
+++++.+|++ +.++..+|.+|...+....+.... ...........++.|+..+++++..+|..+.++..+
T Consensus 271 ~~al~~~p~~---~~~~~~lg~~y~~~~~~~~~~~~~-------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 340 (472)
T 4g1t_A 271 KKALEYIPNN---AYLHCQIGCCYRAKVFQVMNLREN-------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH
T ss_pred HHHHHhCCCh---HHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH
Confidence 9999999999 899999999987654332222111 112233445567788888888888999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHhcChHHHHHHHHHHHhcCCCC---------------
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPK---YYSNRAAC-YTKLAAFDLGLKDCETCLKLDPKF--------------- 445 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~--------------- 445 (570)
|.++...|++++|+.+|+++++..|++.. ++..+|.+ +...|++++|+..|++++.+.|++
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886543 45666654 456788999999999988876654
Q ss_pred ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 446 ---------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 446 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+.++..+|.+|..+|++++|+++|++|+++.|.++.+...+|
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444555555555555555555555555555555555544443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=280.98 Aligned_cols=325 Identities=14% Similarity=0.163 Sum_probs=283.0
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHh
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 105 (570)
....+...+.+++..+|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCc
Q psy3014 106 LKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDP 185 (570)
Q Consensus 106 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (570)
++.+|++..++
T Consensus 87 l~~~p~~~~~~--------------------------------------------------------------------- 97 (450)
T 2y4t_A 87 IQLKMDFTAAR--------------------------------------------------------------------- 97 (450)
T ss_dssp HHHCTTCHHHH---------------------------------------------------------------------
T ss_pred HhcCCCcHHHH---------------------------------------------------------------------
Confidence 99999775544
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHH
Q psy3014 186 RMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEE 265 (570)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 265 (570)
..+|.++...|++++
T Consensus 98 -----------------------------------------------------------------~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 98 -----------------------------------------------------------------LQRGHLLLKQGKLDE 112 (450)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTTCHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHcCCHHH
Confidence 346777788999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDI---TFQNNI------------AAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 266 A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
|+..|++++..+|++. .++..+ |.++...|++++|+..++++++..|++ ..++..+|.+|..
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD---AELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH
Confidence 9999999999999988 776655 666999999999999999999999999 8999999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|++++|+..|++++. .+|.++.++..+|.++...|++++|+..|++++...|+
T Consensus 190 ~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 190 EGEPRKAISDLKAASK--------------------------LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp TTCGGGGHHHHHHHHH--------------------------HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998 77888999999999999999999999999999999999
Q ss_pred CHHHHHHH------------HHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 411 DPKYYSNR------------AACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 411 ~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
++..+..+ |.++...|++++|+..|++++...|+++. .+..+|.++...|++++|+..++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99888766 99999999999999999999999999854 788899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHHHh
Q psy3014 475 LDASNAEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQQI 513 (570)
Q Consensus 475 ~~p~~~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~~~ 513 (570)
++|+++.++..++.++...|+..++. ...+..+|.....
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 99999999999999999999965433 2333455655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=266.14 Aligned_cols=307 Identities=14% Similarity=0.193 Sum_probs=279.2
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR------- 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH-------
Confidence 3567899999999999999999999999999999999999999999999999999999999999999776544
Q ss_pred HHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCC
Q psy3014 124 NQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTM 203 (570)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (570)
T Consensus 75 -------------------------------------------------------------------------------- 74 (359)
T 3ieg_A 75 -------------------------------------------------------------------------------- 74 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CC
Q psy3014 204 GDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP---TD 280 (570)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~ 280 (570)
..+|.++...|++++|+..|+++++.+| ++
T Consensus 75 -----------------------------------------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 75 -----------------------------------------------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp -----------------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred -----------------------------------------------HHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 3467777789999999999999999999 88
Q ss_pred HHHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 281 ITFQNNI------------AAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 281 ~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
+.++..+ |.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-- 182 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAASK-- 182 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 8888777 789999999999999999999999999 89999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH------------
Q psy3014 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS------------ 416 (570)
Q Consensus 349 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------ 416 (570)
..|.++.++..+|.++...|++++|+..|+++++..|+++.++.
T Consensus 183 ------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 183 ------------------------LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp ------------------------TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988654
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
.+|.++...|++++|+..+++++...|+++. ++..+|.++...|++++|+.+|+++++.+|+++.++..++.++..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4488899999999999999999999999874 466799999999999999999999999999999999999999999
Q ss_pred hcCCHHHH---HHHHcCCchHHHh
Q psy3014 493 VSSNPEEV---RKRAMGDPEVQQI 513 (570)
Q Consensus 493 ~~~~~e~~---~~~~~~~p~~~~~ 513 (570)
.|+..++. ...+..+|+....
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHH
Confidence 99965433 2334455654443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=286.28 Aligned_cols=360 Identities=15% Similarity=0.160 Sum_probs=293.7
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH-
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY- 82 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 82 (570)
+...|.++..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+ ++..+|+....+
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~ 130 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASI 130 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC----------
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHH
Confidence 445678899999999999999999999999999999999999999999999999999999999996 777777644321
Q ss_pred -------------------------------------------------------------------hHH--------HH
Q psy3014 83 -------------------------------------------------------------------SRK--------GS 87 (570)
Q Consensus 83 -------------------------------------------------------------------~~l--------a~ 87 (570)
..+ +.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 112 22
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (570)
.....|++++|+..|+++++.+|++...+..++.++...+..... ...+..+
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----------------------------~~~~~~A 262 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----------------------------KNNLLDA 262 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----------------------------TTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----------------------------cccHHHH
Confidence 222346899999999999999999988766555554441110000 0011111
Q ss_pred HHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHH
Q psy3014 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSA 247 (570)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (570)
+..+ ...+ ...|. +
T Consensus 263 ~~~~--------------------~~~~---------------------------------------------~~~~~-~ 276 (537)
T 3fp2_A 263 QVLL--------------------QESI---------------------------------------------NLHPT-P 276 (537)
T ss_dssp HHHH--------------------HHHH---------------------------------------------HHCCC-H
T ss_pred HHHH--------------------HHHH---------------------------------------------hcCCC-c
Confidence 1111 1111 11123 5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..+|.+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~ 353 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..|+++++.
T Consensus 354 ~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKL--------------------------KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999999999999 78889999999999999999999999999999998
Q ss_pred CCCCHH------HHHHHHHHHHHh----------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 408 NPDDPK------YYSNRAACYTKL----------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 408 ~p~~~~------~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
.|+++. .+..+|.++... |++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 776543 467778999999 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHH
Q psy3014 472 ALELDASNAEAVEGYR 487 (570)
Q Consensus 472 al~~~p~~~~~~~~l~ 487 (570)
+++++|++......+.
T Consensus 488 al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 488 SAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHC--CHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHh
Confidence 9999999988865443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.76 Aligned_cols=292 Identities=14% Similarity=0.153 Sum_probs=223.7
Q ss_pred HHHHcCCHHHHHH-HHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 20 AALQANNFIEAIE-AYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 20 ~~~~~~~~~~A~~-~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
++...|+|++|+. .|++++...|++ ...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 6667899999999 999999998887 46689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 95 YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 95 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+++|+..|+++++.+|++..++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~---------------------------------------------------------- 135 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTAL---------------------------------------------------------- 135 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCHHHH----------------------------------------------------------
Confidence 9999999999999998776544
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
..+|
T Consensus 136 ----------------------------------------------------------------------------~~l~ 139 (368)
T 1fch_A 136 ----------------------------------------------------------------------------MALA 139 (368)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3467
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHhcCHHHHHHHHHHHhhcccC--hhH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQN----------------NIAAVYFERKEYDQCIEQYIQKIENRAD--FKL 316 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 316 (570)
.++...|++++|+..|++++...|.+...+. .++.++ ..|++++|+..++++++..|+ .
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~-- 216 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID-- 216 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc--
Confidence 7777899999999999999999999877665 345444 677777777777777777776 5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
+.++..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++
T Consensus 217 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 217 -PDVQCGLGVLFNLSGEYDKAVDCFTAALS--------------------------VRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHcCCHHH
Confidence 66777777777777777777777777776 566667777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCCCHHHH
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-----------LKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 465 (570)
|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.+.|++ ..+|..+|.++..+|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 7777777777777777777777777777777777777777777776666 66777777777777777777
Q ss_pred HHHHHHHHhh
Q psy3014 466 IDAYEKALEL 475 (570)
Q Consensus 466 ~~~~~~al~~ 475 (570)
..+++++++.
T Consensus 350 ~~~~~~~l~~ 359 (368)
T 1fch_A 350 GAADARDLST 359 (368)
T ss_dssp HHHHTTCHHH
T ss_pred HHhHHHHHHH
Confidence 7776665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=265.74 Aligned_cols=304 Identities=15% Similarity=0.202 Sum_probs=247.2
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHH-HHhchhccCCCCh----hHHhHHHHHHhhccCHH
Q psy3014 22 LQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALE-DAEKTISLKPDWP----KGYSRKGSALSYLGRYK 96 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~ 96 (570)
...+.|+.+...++.+...+|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 12 SDVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cCcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 3445555666666655555543 5566789999999 9999999999874 56999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCch
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 176 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (570)
+|+..|+++++.+|++..++
T Consensus 82 ~A~~~~~~al~~~p~~~~~~------------------------------------------------------------ 101 (368)
T 1fch_A 82 NAVLLFEAAVQQDPKHMEAW------------------------------------------------------------ 101 (368)
T ss_dssp HHHHHHHHHHHSCTTCHHHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHH------------------------------------------------------------
Confidence 99999999999999876544
Q ss_pred hHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q psy3014 177 LMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNE 256 (570)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 256 (570)
..+|.+
T Consensus 102 --------------------------------------------------------------------------~~l~~~ 107 (368)
T 1fch_A 102 --------------------------------------------------------------------------QYLGTT 107 (368)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 346777
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH--------------
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ-------------- 322 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-------------- 322 (570)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++ ...+.
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY---AHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---GGGCC--------------
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHhhhhcccHH
Confidence 8889999999999999999999999999999999999999999999999999999987 33333
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHHH
Q psy3014 323 --RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 323 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++.++ ..|++++|+..|++++. ..|. .+.++..+|.++...|++++|+
T Consensus 185 ~~~~~~~~-~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 185 KRILGSLL-SDSLFLEVKELFLAAVR--------------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp -CTTHHHH-HHHHHHHHHHHHHHHHH--------------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh-hcccHHHHHHHHHHHHH--------------------------hCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 455555 77778888888877777 7888 7899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-----------HHHHHHHHHHHHHhcCCHHH
Q psy3014 479 N-----------AEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 479 ~-----------~~~~~~l~~~~~~~~~~~e~ 499 (570)
+ ..++..++.++..+|+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 8 89999999999999996654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=258.87 Aligned_cols=280 Identities=17% Similarity=0.151 Sum_probs=219.3
Q ss_pred HHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhh
Q psy3014 31 IEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGL 106 (570)
Q Consensus 31 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 106 (570)
+..+.+++...+.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566666655554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCcc
Q psy3014 107 KLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPR 186 (570)
Q Consensus 107 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (570)
+++|++..++
T Consensus 127 ~~~p~~~~~~---------------------------------------------------------------------- 136 (365)
T 4eqf_A 127 ELQPNNLKAL---------------------------------------------------------------------- 136 (365)
T ss_dssp HHCTTCHHHH----------------------------------------------------------------------
T ss_pred hcCCCCHHHH----------------------------------------------------------------------
Confidence 9998775544
Q ss_pred HHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHH
Q psy3014 187 MMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266 (570)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 266 (570)
..+|.++...|++++|
T Consensus 137 ----------------------------------------------------------------~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 137 ----------------------------------------------------------------MALAVSYTNTSHQQDA 152 (365)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHTTCHHHH
T ss_pred ----------------------------------------------------------------HHHHHHHHccccHHHH
Confidence 3467777789999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHH----------HHHHHHhcCHHHHHHHHHHHhhcccC--hhHHHHHHHHHHHHHHHcCCH
Q psy3014 267 LAHYNKAVEFDPTDITFQNNI----------AAVYFERKEYDQCIEQYIQKIENRAD--FKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~ 334 (570)
+..|+++++.+|++...+..+ |.++...|++++|+..++++++..|+ + +.++..+|.++...|++
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID---PDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC---HHHHHHHHHHHHHCCCH
Confidence 999999999998876666554 77888888888888888888888887 6 67788888888888888
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY 414 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 414 (570)
++|+..|++++. ..|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 230 ~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 230 NRAIDAFNAALT--------------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 888888888887 677777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3014 415 YSNRAACYTKLAAFDLGLKDCETCLKLDPK------------FLKGWIRKGKILQGMQQQSKAIDAYEKAL 473 (570)
Q Consensus 415 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 473 (570)
+..+|.++...|++++|+..|++++.+.|+ ...+|..+|.++..+|+.+.|....++.+
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 888888888888888888888888887766 35667778888888888877776665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=254.11 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=198.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH--------
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL-------- 321 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~-------- 321 (570)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~ 178 (365)
T 4eqf_A 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY---KYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH---HCC---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc---hHHHhhhccchH
Confidence 34577788889999999999999999999999999999999999999999999999999999887 4444
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHH
Q psy3014 322 --QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 322 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+|.++...|++++|+..|++++. ..|. ++.++..+|.++...|++++|
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAH--------------------------QNGDMIDPDLQTGLGVLFHLSGEFNRA 232 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHH--------------------------HSCSSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH--------------------------hCcCccCHHHHHHHHHHHHHCCCHHHH
Confidence 3459999999999999999999998 7777 889999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+.+|+++++++|
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C------------cHHHHHHHHHHHHHhcCCHH
Q psy3014 478 S------------NAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 478 ~------------~~~~~~~l~~~~~~~~~~~e 498 (570)
+ +..+|..++.++..+|+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp CC------------CHHHHHHHHHHHHHTCHHH
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 8 47889999999999998643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=251.67 Aligned_cols=263 Identities=13% Similarity=0.043 Sum_probs=244.6
Q ss_pred hchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHH
Q psy3014 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 148 (570)
Q Consensus 69 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
..++.++|++..++..+|.++...|++++|+..|+++++++|++..++.
T Consensus 87 ~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~------------------------------- 135 (382)
T 2h6f_A 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWH------------------------------- 135 (382)
T ss_dssp SSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHH-------------------------------
T ss_pred chhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHH-------------------------------
Confidence 3467889999999999999999999999999999999999998876654
Q ss_pred hhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy3014 149 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPP 228 (570)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (570)
T Consensus 136 -------------------------------------------------------------------------------- 135 (382)
T 2h6f_A 136 -------------------------------------------------------------------------------- 135 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 229 AKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
.+|.++...|+ +++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|+++
T Consensus 136 -----------------------~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 136 -----------------------FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp -----------------------HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred -----------------------HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46677777896 999999999999999999999999999999999999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy3014 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 387 (570)
++++|++ ..+|..+|.++...|++++|+.+|++++. .+|.+..+|+.+|.+
T Consensus 193 l~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~--------------------------l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 193 LNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLK--------------------------EDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHH
T ss_pred HHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999 899999999999999
Q ss_pred HHH-CCCHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 388 LFK-NGKYADA-----VKEYTEAINRNPDDPKYYSNRAACYTKLA--AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 388 ~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.+.++ +.+|+++.++..+|.+|..+
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 999 5665888 59999999999999999999999999988 799999999998 99999999999999999987
Q ss_pred C--------C-HHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 460 Q--------Q-QSKAIDAYEKA-LELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 460 g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
| + +++|+++|+++ ++++|.....|..++..+...-+
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~ 368 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHC
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhc
Confidence 4 3 59999999999 99999999999999998887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-31 Score=250.52 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=232.1
Q ss_pred HHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccC-HHHHHHHHHHhhccCCCcHHH
Q psy3014 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-YKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 37 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 115 (570)
++..+|++..++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566777888999999999999999999999999999999999999999999999997 999999999999999987666
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHh
Q psy3014 116 KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLL 195 (570)
Q Consensus 116 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (570)
|.
T Consensus 169 ~~------------------------------------------------------------------------------ 170 (382)
T 2h6f_A 169 WH------------------------------------------------------------------------------ 170 (382)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 54
Q ss_pred cCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy3014 196 GVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE 275 (570)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 275 (570)
.+|.++...|++++|+.+|+++++
T Consensus 171 --------------------------------------------------------~~g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 171 --------------------------------------------------------HRRVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp --------------------------------------------------------HHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666678999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhcccC
Q psy3014 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK-MEDWKNA-----KVYFEKSMSEHR 349 (570)
Q Consensus 276 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~ 349 (570)
++|++..+|+.+|.++...|++++|+..|+++++++|++ ..+|..+|.++.. .|..++| +.+|++++.
T Consensus 195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--- 268 (382)
T 2h6f_A 195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--- 268 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---
T ss_pred hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999 8999999999999 5554777 477888887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-
Q psy3014 350 TPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA- 426 (570)
Q Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 426 (570)
.+|++..+|..+|.++...| ++++|+..+.++ +.+|+++.++..+|.+|..+|
T Consensus 269 -----------------------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 269 -----------------------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp -----------------------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999988 699999999998 999999999999999999985
Q ss_pred -------C-hHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHhC
Q psy3014 427 -------A-FDLGLKDCETC-LKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 427 -------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~ 459 (570)
+ +++|+.+|+++ ++++|.....|..++..+..+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 59999999999 999999999999999877643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=247.42 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQM 115 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (570)
+...|++++|+..|+++++.+|.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 888888888888888888888876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=247.67 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=87.6
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
+...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCcccccc
Q psy3014 124 NQEMNDMNRGDPFANL 139 (570)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (570)
...++...+...+.+.
T Consensus 100 ~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 100 TNEHNANAALASLRAW 115 (327)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8877776666655544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=251.81 Aligned_cols=328 Identities=15% Similarity=0.085 Sum_probs=239.9
Q ss_pred CCHHHHHHHHHHHHc----cCCC--CcchhhchhHHHhcccCHHHHHHHHhchhcc---------CCCChhHHhHHHHHH
Q psy3014 25 NNFIEAIEAYSEAIK----LDGT--NHILFSNRSAAFAKEGNYEKALEDAEKTISL---------KPDWPKGYSRKGSAL 89 (570)
Q Consensus 25 ~~~~~A~~~~~~al~----~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 89 (570)
++++.++..+++.+. ..+. .+..+..+|.++..+|++++|++.|++++++ +|....+|.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 445555555554443 3222 3566788999999999999999999999876 566778899999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
..+|++++|+.+|++++++.+......
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~----------------------------------------------------- 131 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPY----------------------------------------------------- 131 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSS-----------------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHHHhHhccccc-----------------------------------------------------
Confidence 999999999999999987643210000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
.+..+.+
T Consensus 132 -------------------------------------------------------------------------~~~~~~~ 138 (472)
T 4g1t_A 132 -------------------------------------------------------------------------RIESPEL 138 (472)
T ss_dssp -------------------------------------------------------------------------CCCCHHH
T ss_pred -------------------------------------------------------------------------chhhHHH
Confidence 0012334
Q ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 250 EKELGNEAYK--KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE---RKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 250 ~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+..+|..+.. .+++++|+.+|+++++++|+++.++..+|.++.. .+++++|++.++++++++|++ ..++..+
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~---~~~~~~l 215 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN---QYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC---HHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc---hHHHHHH
Confidence 4445554443 3457777777777777777777777777766543 355567777777777777777 6666666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHhcccCC--------HHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC-
Q psy3014 325 GNCYKK----MEDWKNAKVYFEKSMSEHRT--------PEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN- 391 (570)
Q Consensus 325 ~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (570)
|..+.. .|++++|..++++++...|. +.++...+++++|+..+++++..+|+++.++..+|.+|...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 655443 35566777777777776655 23444556677777777777779999999999999887543
Q ss_pred ------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH---HHH
Q psy3014 392 ------------------GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK---GWI 450 (570)
Q Consensus 392 ------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 450 (570)
+.+++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|++.. .+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999987654 456
Q ss_pred HHHHH-HHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 451 RKGKI-LQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 451 ~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.+|.+ +...|++++|+.+|+++++++|++..
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 67765 46889999999999999988766544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=223.39 Aligned_cols=246 Identities=40% Similarity=0.664 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KLIAK 319 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~ 319 (570)
+..+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|+. +....
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4678999999999999999999999999999999 999999999999999999999999999999887754 22368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
++..+|.++...|++++|+..|++++...+...+....+++++|+..+++++..+|..+.++..+|.++...|++++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC---
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELD--- 476 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 476 (570)
+|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+.+|+++++++
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCcHHHHHHHHHHH
Q psy3014 477 ---ASNAEAVEGYRQCS 490 (570)
Q Consensus 477 ---p~~~~~~~~l~~~~ 490 (570)
|++..++..++.++
T Consensus 241 ~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 241 NNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HTTTTHHHHHHHHHHTT
T ss_pred cCCCchHHHHHHHHHhh
Confidence 99999998888763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-28 Score=240.29 Aligned_cols=367 Identities=15% Similarity=0.094 Sum_probs=289.8
Q ss_pred HHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchhhchhHHHhc----ccCHHHHHHHHhchhccCCCCh
Q psy3014 8 VYEVSLLKDKGNAALQ----ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK----EGNYEKALEDAEKTISLKPDWP 79 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 79 (570)
+.++++++.+|..++. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 3478999999999999 89999999999999876 578999999999999 99999999999999875 578
Q ss_pred hHHhHHHHHHhh----ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 80 KGYSRKGSALSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 80 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
.+++.+|.+|.. .+++++|+.+|+++.+. +++.++..++.++.. +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~-g~g-------------------------- 162 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFE-GDG-------------------------- 162 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-TSS--------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc-CCC--------------------------
Confidence 999999999999 89999999999999875 578889999988865 100
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
...++..++..+.. ..
T Consensus 163 ----~~~d~~~A~~~~~~--------------------a~---------------------------------------- 178 (490)
T 2xm6_A 163 ----VTRDYVMAREWYSK--------------------AA---------------------------------------- 178 (490)
T ss_dssp ----SCCCHHHHHHHHHH--------------------HH----------------------------------------
T ss_pred ----CCCCHHHHHHHHHH--------------------HH----------------------------------------
Confidence 00111111111111 00
Q ss_pred CCcccchhHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHH
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQK 307 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~ 307 (570)
...++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++
T Consensus 179 -------~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 179 -------EQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp -------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------HCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 00246778889999998 89999999999999875 578899999999987 88999999999999
Q ss_pred hhcccChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcccCCH------HHHHHH-----HHHHHHHHHHHHHhc
Q psy3014 308 IENRADFKLIAKALQRIGNCYKK----MEDWKNAKVYFEKSMSEHRTP------EIRTLI-----SEMEKKIKEEEKKAY 372 (570)
Q Consensus 308 l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~------~~~~~~-----~~~~~a~~~~~~~~~ 372 (570)
++.. + +.+++.+|.+|.. .+++++|+.+|+++.+..... .++... +++++|+..++++..
T Consensus 250 ~~~~--~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 250 AEQG--N---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HTTT--C---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHCC--C---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 8763 3 6788899999998 899999999999998753221 112222 467778888887766
Q ss_pred CChhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCC
Q psy3014 373 IDPVKAEEAKERGNELFKNG---KYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~ 445 (570)
. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. .+
T Consensus 325 ~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~ 398 (490)
T 2xm6_A 325 Q--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GL 398 (490)
T ss_dssp T--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred c--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CC
Confidence 5 35567888888888766 788888888888876 578888888888888 78888888888888875 35
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHH
Q psy3014 446 LKGWIRKGKILQG----MQQQSKAIDAYEKALELDAS---NAEAVEGYRQCSI 491 (570)
Q Consensus 446 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~ 491 (570)
+.+++.+|.+|.. .+++++|+.+|+++++.+|+ ++.+...++.++.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 7888888888887 78888888888888888844 7777777666544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=216.46 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY---LGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC
Q psy3014 324 IGNCYKKM-----------EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 324 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (570)
+|.++... |++++|+..|++++. .+|+++.++..+|.++...|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------------------~~P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--------------------------VNPRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--------------------------hCcccHHHHHHHHHHHHHcC
Confidence 99999999 888888888888888 89999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q psy3014 473 LE 474 (570)
Q Consensus 473 l~ 474 (570)
-.
T Consensus 212 ~~ 213 (217)
T 2pl2_A 212 HH 213 (217)
T ss_dssp --
T ss_pred hh
Confidence 53
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=224.59 Aligned_cols=183 Identities=16% Similarity=0.180 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|++++.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------------- 136 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIR---------------- 136 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCC----------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhh----------------
Confidence 35555555555555555555555555555555 55666666666666666666666666666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA---FDLGLKDCETCL 439 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al 439 (570)
.+|.++.++..+|...+..+++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|++++
T Consensus 137 ----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 137 ----------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ----------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ----------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5666666677777444445578888888888888888888888888888888888 888888888888
Q ss_pred hcC---CC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 440 KLD---PK-----FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 440 ~~~---p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..++.+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 775 43 23578889999999999999999999999999999999988887765543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=218.00 Aligned_cols=203 Identities=14% Similarity=0.105 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEF--DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++ ..++..+|
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~---~~~~~~l~ 137 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS---LECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---HHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---HHHHHHHH
Confidence 33445677777888899999999998875 599999999999999999999999999887 677 78899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH--HHHHHCCCHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG--NELFKNGKYADAVKEYTE 403 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~ 403 (570)
.++..+|++++|+..|++++. .+|+........+ .++...|++++|+.+|++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~--------------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQD--------------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHh--------------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999988 5666554443333 334456899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhCCCcHHH
Q psy3014 404 AINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK-AIDAYEKALELDASNAEA 482 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~ 482 (570)
+++..|+++.+++++|.++...|++++|+..|++++..+|+++.++.++|.++...|++.+ +..+++++++++|+++.+
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999999876 568899999999999887
Q ss_pred HH
Q psy3014 483 VE 484 (570)
Q Consensus 483 ~~ 484 (570)
..
T Consensus 272 ~d 273 (291)
T 3mkr_A 272 KE 273 (291)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=237.21 Aligned_cols=419 Identities=10% Similarity=0.018 Sum_probs=293.1
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
.+...|.++..|..++.. ...|++++|...|++++...|.++.+|..++..+...|++++|...|++++...| ++..|
T Consensus 5 al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw 82 (530)
T 2ooe_A 5 KLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLW 82 (530)
T ss_dssp HHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHH
T ss_pred HhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHH
Confidence 356778899999999984 7899999999999999999999999999999999999999999999999999999 57788
Q ss_pred hHHHH-HHhhccCHHHHHH----HHHHhhcc---CCCcHHHHHHHHHHHHHh---------hhccCCCccccccCCCchH
Q psy3014 83 SRKGS-ALSYLGRYKESIS----TYEEGLKL---DPNNEQMKEAIKDVRNQE---------MNDMNRGDPFANLFSDPNI 145 (570)
Q Consensus 83 ~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 145 (570)
..++. +....|++++|.+ .|++++.. +|.+..+|...+.+.... ++...+...+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---- 158 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---- 158 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh----
Confidence 88885 4456688877665 78887653 566777887776665431 111111111111110
Q ss_pred HHHhhhCCCCCCCCCChHHHHHHHHHhh--CchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 146 FVQLQLDPRTKPFLSDPSYVQMIKEIQK--DPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
.|.. ....+......+.. +.......+... ...+....... ..
T Consensus 159 ------~P~~----~~~~~~~~~~~~e~~~~~~~~~~~l~~~--~~~~~~A~~~~-----------------------~~ 203 (530)
T 2ooe_A 159 ------NPMI----NIEQLWRDYNKYEEGINIHLAKKMIEDR--SRDYMNARRVA-----------------------KE 203 (530)
T ss_dssp ------SCCT----THHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHHHHH-----------------------HH
T ss_pred ------chhh----hHHHHHHHHHHHHHhhchhHHHHHHHHh--hHHHHHHHHHH-----------------------HH
Confidence 1100 00000000000000 000000000000 00000000000 00
Q ss_pred CCCCCCCCCCCCCCcc---cc-----hhHHHHHHHHHHHHHHHHc----cC----HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKN---LT-----DEQRSAKKEKELGNEAYKK----KN----FEEALAHYNKAVEFDPTDITFQNNI 287 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~la~~~~~~----~~----~~~A~~~~~~al~~~p~~~~~~~~l 287 (570)
. ......+... +. ........|.......... ++ ...|+..|++++..+|.++.+|+.+
T Consensus 204 ~-----~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~ 278 (530)
T 2ooe_A 204 Y-----ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEA 278 (530)
T ss_dssp H-----HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H-----HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 0 0000000000 00 0012233443333222221 22 2478889999999999999999999
Q ss_pred HHHHHH-------hcCHH-------HHHHHHHHHhh-cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHH
Q psy3014 288 AAVYFE-------RKEYD-------QCIEQYIQKIE-NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352 (570)
Q Consensus 288 a~~~~~-------~~~~~-------~A~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 352 (570)
|.++.. .|+++ +|+..|+++++ ..|++ ..+|..+|.++...|++++|...|++++.
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~------ 349 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA------ 349 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC------
Confidence 999886 68876 89999999997 78988 88999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhcChHH
Q psy3014 353 IRTLISEMEKKIKEEEKKAYIDPVKA-EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC-YTKLAAFDL 430 (570)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~ 430 (570)
..|.++ .+|..+|.++.+.|++++|...|+++++..|.....+...+.+ +...|++++
T Consensus 350 --------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 350 --------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp --------------------SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred --------------------ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 677664 5899999999999999999999999999988887777776665 346899999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHhcCC
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE----AVEGYRQCSIAVSSN 496 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~ 496 (570)
|...|+++++.+|+++.+|..+|.++...|+.++|...|++++...|.++. +|..+.......|+.
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999998776654 888888888888863
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=222.92 Aligned_cols=255 Identities=17% Similarity=0.207 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh----hHHhHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP----KGYSRK 85 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l 85 (570)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.++ .++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 55444 348999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|.++...|++++|+..|+++++.+|++..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------------------------- 111 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMY------------------------------------------------- 111 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH-------------------------------------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHH-------------------------------------------------
Confidence 9999999999999999999999998765543
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
T Consensus 112 -------------------------------------------------------------------------------- 111 (272)
T 3u4t_A 112 -------------------------------------------------------------------------------- 111 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
..+|.++...|++++|+.+|+++++.+|.++.++..+|...+..+++++|+..++++++..|++ ..++..+|
T Consensus 112 -----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~ 183 (272)
T 3u4t_A 112 -----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---YIGYLWRA 183 (272)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHH
T ss_pred -----HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---hHHHHHHH
Confidence 4577788889999999999999999999999999999955555669999999999999999999 89999999
Q ss_pred HHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-----hHHHHHHHHHHHHHCCCHHHH
Q psy3014 326 NCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-----KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 326 ~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A 397 (570)
.++...|+ +++|+..|++++.... ..|. ...++..+|.++...|++++|
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCA-----------------------PGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHG-----------------------GGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHh-----------------------cccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 8899999999987421 1122 346788888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKL 425 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~ 425 (570)
+.+|+++++++|+++.++-.++.+....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 8888888888888888888777665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=218.15 Aligned_cols=277 Identities=9% Similarity=0.024 Sum_probs=239.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC-cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 18 GNAALQANNFIEAIEAYSEAIKLDGTN-HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 18 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
....+..|+|.+|+..+++....+|++ ......++.+|+.+|++++|+..++.. +|....++..++..+...|+++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHH
Confidence 456788999999999999998888887 467788999999999999999999773 6667889999999999999999
Q ss_pred HHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhC
Q psy3014 97 ESISTYEEGLKL--DPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD 174 (570)
Q Consensus 97 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
+|++.+++++.. +|+++.++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~---------------------------------------------------------- 104 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFL---------------------------------------------------------- 104 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHH----------------------------------------------------------
Confidence 999999998865 58776544
Q ss_pred chhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHH
Q psy3014 175 PSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELG 254 (570)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 254 (570)
+.+|
T Consensus 105 ----------------------------------------------------------------------------~~la 108 (291)
T 3mkr_A 105 ----------------------------------------------------------------------------LMAA 108 (291)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 3567
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH--HHHHHcC
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG--NCYKKME 332 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~ 332 (570)
.++...|++++|+..|++ |.++.++..+|.++..+|++++|+..++++++.+|++ .......+ .++...|
T Consensus 109 ~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~l~~a~~~l~~~~~ 180 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGE 180 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhCch
Confidence 778889999999999998 8999999999999999999999999999999999987 43333333 3334558
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
++++|+..|++++. ..|.++.++..+|.++...|++++|+..|++++..+|+++
T Consensus 181 ~~~eA~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 181 KLQDAYYIFQEMAD--------------------------KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHHHHHHHHHHHH--------------------------HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999998 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDL-GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
.++.++|.++...|++++ +..+++++++++|+++.+. .+..+.+.|+++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999999999976 5789999999999999765 3455556666665554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=220.28 Aligned_cols=102 Identities=29% Similarity=0.419 Sum_probs=73.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-------hh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-------PK 80 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 80 (570)
+..++.+..+|..++..|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467788888888888888888888888888877 777777777777777777777777777777777665 45
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDP 110 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 110 (570)
++..+|.++...|++++|+..|+++++++|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 556666666666666666666665555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=242.88 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=223.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhcc------CCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISL------KPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 77 (570)
...+..++.+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44677899999999999999999999999999999984 67889999999999999999999999877 455
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
...++..+|.++...|++++|+..+++++++.|....
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------------------------- 122 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND------------------------------------------- 122 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------------------
Confidence 6789999999999999999999999999987553211
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 123 -------------------------------------------------------------------------------- 122 (406)
T 3sf4_A 123 -------------------------------------------------------------------------------- 122 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHH
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKN--------------------FEEALAHYNKAVEF------DPTDITFQNNIAAVY 291 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 291 (570)
.+..+.++..+|.++...|+ +++|+.++++++.+ .|....++..+|.++
T Consensus 123 -----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 123 -----KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 01345567778888888888 88999998888876 233355777888888
Q ss_pred HHhcCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Q psy3014 292 FERKEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEE 368 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 368 (570)
...|++++|+..++++++..+.. .....++..+|.++...|++++|+.++++++...+..
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 260 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL----------------- 260 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------------
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC-----------------
Confidence 88888888888888887664432 2334577777777777777777777777777621100
Q ss_pred HHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 369 KKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
...+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 261 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 261 ---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0112225566667777777777777777777776654332 4456666666666666666666666666552
Q ss_pred C------CCHHHHHHHHHHHHhCCCH
Q psy3014 443 P------KFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 443 p------~~~~~~~~l~~~~~~~g~~ 462 (570)
+ ....++..+|.++...|+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 2244555566666555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=213.79 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=176.4
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
+|.++..++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-----------cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCC
Q psy3014 87 SALSYL-----------GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT 155 (570)
Q Consensus 87 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (570)
.++... |++++|+..|+++++++|++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~-------------------------------------- 122 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL-------------------------------------- 122 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH--------------------------------------
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHH--------------------------------------
Confidence 999999 9999999999999999998766544
Q ss_pred CCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 156 KPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEP 235 (570)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (570)
T Consensus 123 -------------------------------------------------------------------------------- 122 (217)
T 2pl2_A 123 -------------------------------------------------------------------------------- 122 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh
Q psy3014 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK 315 (570)
Q Consensus 236 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 315 (570)
.+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 123 ----------------~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~- 184 (217)
T 2pl2_A 123 ----------------QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD- 184 (217)
T ss_dssp ----------------HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-
T ss_pred ----------------HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 46777788999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..++..+|.++...|++++|+..|+++-.
T Consensus 185 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 185 --LDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp --HHHHHHHHHHHTC----------------
T ss_pred --hHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 89999999999999999999999988753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=233.00 Aligned_cols=306 Identities=16% Similarity=0.210 Sum_probs=260.3
Q ss_pred CcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh----hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHH
Q psy3014 44 NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAI 119 (570)
Q Consensus 44 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 119 (570)
....+..+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.+.+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------- 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------- 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------
Confidence 455678999999999999999999999999999884 678999999999999999999999998653210
Q ss_pred HHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcc
Q psy3014 120 KDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNM 199 (570)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (570)
T Consensus 81 -------------------------------------------------------------------------------- 80 (406)
T 3sf4_A 81 -------------------------------------------------------------------------------- 80 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy3014 200 SSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT 279 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 279 (570)
...+..+.++..+|.++...|++++|+.++++++...|.
T Consensus 81 -----------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 81 -----------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 012355677888999999999999999999999998664
Q ss_pred C------HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHH
Q psy3014 280 D------ITFQNNIAAVYFERKE--------------------YDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 280 ~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~ 330 (570)
. ..++..+|.++...|+ +++|+..+++++... ++.+....++..+|.++..
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 3 5588999999999999 999999999998652 2334457899999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.|++++|+.++++++...+.. ...+....++..+|.++...|++++|+.++++++...|.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--------------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--------------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999998732210 012334568999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--
Q psy3014 411 D------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKALELD-- 476 (570)
Q Consensus 411 ~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 476 (570)
. ..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5 6789999999999999999999999999885543 6688999999999999999999999999984
Q ss_pred ----CCcHHHHHHHHHHHHHhcCCH
Q psy3014 477 ----ASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 477 ----p~~~~~~~~l~~~~~~~~~~~ 497 (570)
|....++..++.++..+|+..
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 445788999999999999853
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=207.14 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---ATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---hHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALR--------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999998 78888899999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
++..|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++++|+++.++.
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy3014 485 GYRQCSIAVS 494 (570)
Q Consensus 485 ~l~~~~~~~~ 494 (570)
.++.+....+
T Consensus 232 ~~~~l~~~~~ 241 (243)
T 2q7f_A 232 AKKLLGHHHH 241 (243)
T ss_dssp HHTC------
T ss_pred HHHHHHhhcc
Confidence 8887765544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-25 Score=218.36 Aligned_cols=357 Identities=13% Similarity=0.044 Sum_probs=291.0
Q ss_pred HhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCcchhhchhHHHhc----ccCHHHHHHHHhchhccCCCChh
Q psy3014 9 YEVSLLKDKGNAALQ----ANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK----EGNYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 80 (570)
.++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++... +++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 467899999999999 99999999999999875 578999999999998 89999999999999775 5789
Q ss_pred HHhHHHHHHhh----ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCC
Q psy3014 81 GYSRKGSALSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK 156 (570)
Q Consensus 81 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (570)
+++.+|.+|.. .+++++|+.+|+++++. +++.++..++.++..-..
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g---------------------------- 198 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG---------------------------- 198 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS----------------------------
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----------------------------
Confidence 99999999998 89999999999999986 578899999988876100
Q ss_pred CCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 157 PFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPE 236 (570)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (570)
...++..++..+.. ..
T Consensus 199 ---~~~~~~~A~~~~~~--------------------a~----------------------------------------- 214 (490)
T 2xm6_A 199 ---VERNDAISAQWYRK--------------------SA----------------------------------------- 214 (490)
T ss_dssp ---SCCCHHHHHHHHHH--------------------HH-----------------------------------------
T ss_pred ---CCcCHHHHHHHHHH--------------------HH-----------------------------------------
Confidence 00111111111111 00
Q ss_pred CcccchhHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHh
Q psy3014 237 DKNLTDEQRSAKKEKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKI 308 (570)
Q Consensus 237 ~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l 308 (570)
...++.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.++.. .+++++|+..|+++.
T Consensus 215 ------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 215 ------TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp ------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred ------HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 00235678889999987 89999999999999875 578899999999998 899999999999998
Q ss_pred hcccChhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcccCCHHHHHH----------HHHHHHHHHHHHHHhcC
Q psy3014 309 ENRADFKLIAKALQRIGNCYKKM-----EDWKNAKVYFEKSMSEHRTPEIRTL----------ISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~ 373 (570)
+. ++ +.+++.+|.+|... +++++|+.+|+++.+..+. ..... ..++++|+..+++++..
T Consensus 287 ~~--~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 287 EQ--GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp TT--TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred Hc--CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 76 34 67889999999988 8999999999999886543 22222 23778999999999876
Q ss_pred ChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCC-
Q psy3014 374 DPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPK- 444 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~- 444 (570)
.++.+++.+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..|+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 578999999999999 89999999999999986 479999999999999 89999999999999999954
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 445 --FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 445 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++.+...+|.++.. +...|....++.++..|++..+.
T Consensus 437 ~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~ 475 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWAR 475 (490)
T ss_dssp HHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988887664 45666666666666667665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=220.58 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCH---HHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 15 KDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY---EKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 15 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 55799999999999999999999765 5789999999999999999 9999999999976 77899999997766
Q ss_pred cc-----CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 92 LG-----RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 92 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.| ++++|+.+|+++++. +++.++..++.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQ 118 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 66 889999999999984 455588889988877
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=219.55 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=204.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----cchhhchhHHHhcccCHHHHHHHHhchhcc------CCCC
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISL------KPDW 78 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 78 (570)
.+...++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.. .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 457789999999999999999999999999999998 467889999999999999999999999887 4556
Q ss_pred hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 79 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
..++..+|.++...|++++|+..+++++++.|....
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------------------- 118 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------------------- 118 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Confidence 788999999999999999999999999876543211
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
T Consensus 119 -------------------------------------------------------------------------------- 118 (338)
T 3ro2_A 119 -------------------------------------------------------------------------------- 118 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHH
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKKKN--------------------FEEALAHYNKAVEF------DPTDITFQNNIAAVYF 292 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~ 292 (570)
.+..+.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++.
T Consensus 119 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 119 ----KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 01334566678888888888 88888888888765 2233456777777777
Q ss_pred HhcCHHHHHHHHHHHhhcccC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 293 ERKEYDQCIEQYIQKIENRAD---FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 293 ~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
..|++++|+..++++++..+. ......++..+|.++...|++++|+.++++++...+..
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------ 256 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------------------ 256 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------------
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------------------
Confidence 788888888877777765433 22334567777777777777777777777776521100
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
...+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++.+.+
T Consensus 257 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 257 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred --cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 0112224556666666666666666666666666553321 33455555555555555555555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=226.99 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=200.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc----chhhchhHHHhcccCHHHHHHHHhchhcc------CCC
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----ILFSNRSAAFAKEGNYEKALEDAEKTISL------KPD 77 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 77 (570)
+..+..++.+|..++..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56788899999999999999999999999999999986 57899999999999999999999999988 577
Q ss_pred ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
...++..+|.++...|++++|+..|++++++.+...
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 160 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-------------------------------------------- 160 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------------------------------------
Confidence 889999999999999999999999999987532110
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
T Consensus 161 -------------------------------------------------------------------------------- 160 (411)
T 4a1s_A 161 -------------------------------------------------------------------------------- 160 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhHHHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHh
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKKN-----------------FEEALAHYNKAVEFD------PTDITFQNNIAAVYFER 294 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 294 (570)
..+..+.++..+|.++...|+ +++|+.++++++.+. |....++..+|.++...
T Consensus 161 ----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 161 ----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL 236 (411)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 012456677788888888888 778887777776653 22234555566666666
Q ss_pred cCHHHHHHHHHHHhhcccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Q psy3014 295 KEYDQCIEQYIQKIENRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371 (570)
Q Consensus 295 ~~~~~A~~~~~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 371 (570)
|++++|+..++++++..+.. .....++..+|.++...|++++|+.++++++
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------- 290 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL-------------------------- 290 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--------------------------
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH--------------------------
Confidence 66666666666665544322 1122344555555555555555555555544
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK- 444 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~- 444 (570)
...+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 291 ----------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 291 ----------------------------------ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp ----------------------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 443321 345555666666666666666666666554332
Q ss_pred -----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 445 -----FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 445 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
...++..+|.++..+|++++|+.+|++++++.+..
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 23466777777777777777777777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=225.81 Aligned_cols=227 Identities=14% Similarity=0.175 Sum_probs=161.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHH
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQR 323 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~ 323 (570)
+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++...+ +.+....++..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 444444555555555555555544 555555555555555555555555555555554411 12223666677
Q ss_pred HHHHHHHcCC-----------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 324 IGNCYKKMED-----------------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 324 l~~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
+|.++...|+ +++|+.++++++...+. ....+....++..+|.
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~la~ 231 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD--------------------LGDRGAQGRACGNLGN 231 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH--------------------HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHH
Confidence 7777777777 77777777777662211 0123556678888888
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGK 454 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 454 (570)
++...|++++|+.+++++++..|.. ..++..+|.++...|++++|+..+++++...|.. ..++..+|.
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN 311 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888776543 2388999999999999999999999999987644 678899999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcCCHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASN------AEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~e~ 499 (570)
++..+|++++|+.+|++++++.++. ..++..++.++..+|+..++
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999986543 55899999999999996553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=195.37 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=206.3
Q ss_pred hHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 243 EQRS-AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 243 ~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
+|.. +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~ 108 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVL 108 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHH
Confidence 3454 89999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
..+|.++...|++++|+.++++++. .+ ..|..+.++..+|.++...|++++|+.+|
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ-DT-----------------------LYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-CT-----------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh-Cc-----------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999987 21 46778899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 402 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
+++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..++.++...|++++|..+++++++.+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy3014 482 AVEGY 486 (570)
Q Consensus 482 ~~~~l 486 (570)
++..+
T Consensus 245 ~~~~l 249 (252)
T 2ho1_A 245 YQEFQ 249 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=190.88 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++ ..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINN 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHH
Confidence 358899999999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Q psy3014 323 RIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401 (570)
Q Consensus 323 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 401 (570)
.+|.++... |++++|+..+++++. .+ ..|....++..+|.++...|++++|+.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~-~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALA-DP-----------------------TYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHT-ST-----------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHc-Cc-----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 999999999999997 22 46777899999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP-KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 402 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++..|.++.++..+|.++...|++++|+..+++++...| .+...+..++.++...|++++|..+++.+.+.+|+++
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 137 KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy3014 481 EAVEGYR 487 (570)
Q Consensus 481 ~~~~~l~ 487 (570)
.+...+.
T Consensus 217 ~~~~~l~ 223 (225)
T 2vq2_A 217 ELQTVLT 223 (225)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9876653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=190.01 Aligned_cols=174 Identities=19% Similarity=0.292 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHH
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLIS 358 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 358 (570)
+++.+|+.+|.++...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..+.+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~------------ 67 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVV------------ 67 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------
Confidence 455667777777777777777777777777777777 67777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
..|..+.++..+|.++...++++.|...+.+++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 68 --------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 68 --------------LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp --------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 666677777777777777777777777777777777777777888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
++++|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888888888888888888888777643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=218.09 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=287.1
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhH-HHhcccCHHHHHH----HHhchhc---cC
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSA-AFAKEGNYEKALE----DAEKTIS---LK 75 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~---~~ 75 (570)
+...|.++..|...|......|++++|...|++++...| +...|..++. +....|++++|.+ .|++++. .+
T Consensus 39 l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~ 117 (530)
T 2ooe_A 39 VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME 117 (530)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTS
T ss_pred HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCC
Confidence 345688899999999999999999999999999999999 5778888775 4445677777665 7777765 46
Q ss_pred CCChhHHhHHHHHHhh---------ccCHHHHHHHHHHhhccCCCcH--HHHHHHHHHHHHhhhc------cCCCccccc
Q psy3014 76 PDWPKGYSRKGSALSY---------LGRYKESISTYEEGLKLDPNNE--QMKEAIKDVRNQEMND------MNRGDPFAN 138 (570)
Q Consensus 76 p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~------~~~~~~~~~ 138 (570)
|++...|...+..... .|++++|...|+++++ .|.+. ..+..........+.. ......+..
T Consensus 118 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 196 (530)
T 2ooe_A 118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMN 196 (530)
T ss_dssp TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHH
Confidence 6778888888887765 7999999999999999 57543 3333322221110000 000000000
Q ss_pred cC---CC-chHHHHhhhCCC-CCCCCC------ChHHHHHHHHHhhCchhHHhhccCc-----cHHHHHHHHhcCcccCC
Q psy3014 139 LF---SD-PNIFVQLQLDPR-TKPFLS------DPSYVQMIKEIQKDPSLMTTKLKDP-----RMMTTLSVLLGVNMSST 202 (570)
Q Consensus 139 ~~---~~-~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 202 (570)
+. .. ..+...+..... ...... ...+...+.....++. .+.+. +....+.
T Consensus 197 A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~----~~~~~~~~~~~a~~~y~---------- 262 (530)
T 2ooe_A 197 ARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL----RTEDQTLITKRVMFAYE---------- 262 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS----CCSCSHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc----cCCcchhHHHHHHHHHH----------
Confidence 00 00 000000100000 000000 0112222211111110 00011 1112222
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH-------ccCHH-------HHHH
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK-------KKNFE-------EALA 268 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~ 268 (570)
..+...|..+.+|+.+|..+.. .|+++ +|+.
T Consensus 263 -----------------------------------~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 263 -----------------------------------QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp -----------------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2233355678999999999986 79987 9999
Q ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 269 HYNKAVE-FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 269 ~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
.|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.+. ..+|..+|.++.+.|++++|+..|+++++
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~- 384 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARE- 384 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 9999997 8999999999999999999999999999999999999862 25899999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 348 HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE-LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
..|.....+...+.+ +...|++++|..+|+++++..|+++.+|..++.++...|
T Consensus 385 -------------------------~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 385 -------------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp -------------------------CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred -------------------------ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 566666666666655 346999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 427 AFDLGLKDCETCLKLDPKFLK----GWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
++++|...|++++...|.++. .|...+......|+.+.+..+++++++..|++
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999998776554 78888888999999999999999999999953
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=213.65 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=239.2
Q ss_pred chhhchhHHHhcccCHHHHHHHHhchhccCCCC----hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3014 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW----PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD 121 (570)
Q Consensus 46 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 121 (570)
..++..|.++...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 456778999999999999999999999999998 4678899999999999999999999988652210
Q ss_pred HHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccC
Q psy3014 122 VRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSS 201 (570)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (570)
T Consensus 77 -------------------------------------------------------------------------------- 76 (338)
T 3ro2_A 77 -------------------------------------------------------------------------------- 76 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-
Q psy3014 202 TMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD- 280 (570)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~- 280 (570)
...+..+.++..+|.++...|++++|+..+++++...|..
T Consensus 77 ---------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 77 ---------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp ---------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 0112456778889999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhhcc---cChhHHHHHHHHHHHHHHHcC
Q psy3014 281 -----ITFQNNIAAVYFERKE--------------------YDQCIEQYIQKIENR---ADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 281 -----~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~~~~ 332 (570)
..++..+|.++...|+ +++|+..+++++... ++......++..+|.++...|
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 4488999999999999 999999999998653 233344778999999999999
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD- 411 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 411 (570)
++++|+.++++++...+.. ...+....++..+|.++...|++++|+.++++++...+..
T Consensus 198 ~~~~A~~~~~~a~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEF--------------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998732210 0223345688999999999999999999999999886654
Q ss_pred -----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 412 -----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 412 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..+|++++++.+..
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999875543 4578899999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-26 Score=207.26 Aligned_cols=183 Identities=11% Similarity=0.022 Sum_probs=83.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++..|++ .......+. +...|
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~ 158 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYL-AEQKL 158 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH-HHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---hHHHHHHHH-HHHhc
Confidence 34444444555555555555555555555555555555555555555555555555555544 222222222 23334
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-- 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 410 (570)
++++|+..+.+++. ..|.+...+ .++.++...++.++|+..+.+++...|.
T Consensus 159 ~~~~A~~~~~~~~~--------------------------~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 159 DEKQAKEVLKQHFE--------------------------KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp CHHHHHHHHHHHHH--------------------------HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------------cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 55555555544444 222222222 2344444444445555555554444332
Q ss_pred --CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 411 --DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 411 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
++.++..+|.++...|++++|+..|++++..+|++... .+.++..+|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 13455555555555555555555555555555544322 244445555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=186.82 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
+.+.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+. ..++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...++++.|...+.+++. ..|.++.++..+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~--------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIA--------------------------LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------------------------hCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
++.+|+++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999997643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=202.67 Aligned_cols=255 Identities=14% Similarity=0.104 Sum_probs=216.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccC----CCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLD----GTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
++......|++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3444556789999999999999983 456889999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHh
Q psy3014 93 GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ 172 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (570)
|++++|+..|+++++.+|++..++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~-------------------------------------------------------- 114 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAH-------------------------------------------------------- 114 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHH--------------------------------------------------------
T ss_pred cCHHHHHHHHHHHHhcCccccHHH--------------------------------------------------------
Confidence 999999999999999998765443
Q ss_pred hCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHH
Q psy3014 173 KDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKE 252 (570)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (570)
..
T Consensus 115 ------------------------------------------------------------------------------~~ 116 (275)
T 1xnf_A 115 ------------------------------------------------------------------------------LN 116 (275)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 45
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+..|+++++.+|++.......+.+ ...|++++|+..+++++...|++ ... ..++.++...+
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~ 191 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKE---QWG-WNIVEFYLGNI 191 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCC---STH-HHHHHHHTTSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc---hHH-HHHHHHHHHhc
Confidence 77788889999999999999999999998777666644 67799999999999999988887 333 34778888899
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
+.++|+..+.+++...+. ..|..+.++..+|.++...|++++|+..|++++..+|++.
T Consensus 192 ~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTS----------------------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp CHHHHHHHHHHHCCSHHH----------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHhccccc----------------------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 999999999999883211 1234478999999999999999999999999999999775
Q ss_pred HHHHHHHHHHHHhcChHHHHHHH
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.. .+.++...|++++|+..|
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 43 477889999999999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=190.07 Aligned_cols=195 Identities=19% Similarity=0.328 Sum_probs=163.3
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 250 EKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 250 ~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+..|+++++.. + +.++
T Consensus 41 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~ 113 (273)
T 1ouv_A 41 CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGC 113 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHH
T ss_pred HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHH
Confidence 3446666666 788888888888888875 78888888888888 888888988888888763 4 7788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCC
Q psy3014 322 QRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGK 393 (570)
Q Consensus 322 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 393 (570)
..+|.+|.. .+++++|+.+|++++. .. ++.++..+|.++.. .++
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACD--------------------------LN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHH--------------------------TT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHh--------------------------cC--cHHHHHHHHHHHHcCCCCCCC
Confidence 888998888 8899999999988887 33 46678888888888 889
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKA 465 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A 465 (570)
+++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 99999999999877 467888999999999 9999999999999998866 7888999999998 8999999
Q ss_pred HHHHHHHHhhCCCcHHHH
Q psy3014 466 IDAYEKALELDASNAEAV 483 (570)
Q Consensus 466 ~~~~~~al~~~p~~~~~~ 483 (570)
+.+|++++++.|++...+
T Consensus 242 ~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 242 IENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 999999999988765443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=193.51 Aligned_cols=178 Identities=17% Similarity=0.287 Sum_probs=109.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME 332 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 332 (570)
+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|++ ..++..+|.++...|
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhc
Confidence 44444455556666666666666666666666666666666666666666666666666555 555666666666666
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..|+++
T Consensus 140 ~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 140 QPKLALPYLQRAVE--------------------------LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp CHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 66666666666665 4555556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 413 KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 413 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
.++..+|.++...|++++|+..+++++..+|+++.++..++.+....
T Consensus 194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 66666666666666666666666666666666666666655554433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=213.45 Aligned_cols=211 Identities=13% Similarity=0.119 Sum_probs=202.2
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEY-DQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
.+.+++|+..++++....|.++.+++.+|.++...|++ ++|+..|+++++.+|++ ..++..+|.+|...|++++|+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHH
Confidence 34578899999999999999999999999999999999 99999999999999999 999999999999999999999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCC
Q psy3014 339 VYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN---------GKYADAVKEYTEAINRNP 409 (570)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p 409 (570)
.+|++++. .+|+ ..++..+|.++... |++++|+..|+++++.+|
T Consensus 158 ~~~~~al~--------------------------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 158 TCFSGALT--------------------------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHT--------------------------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--------------------------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 99999999 7787 69999999999999 999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh--------cChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 410 DDPKYYSNRAACYTKL--------AAFDLGLKDCETCLKLDP---KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
+++.+|+.+|.++... |++++|+..|++++.++| +++.+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999999999 99999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCHHHH
Q psy3014 479 NAEAVEGYRQCSIAVSSNPEEV 500 (570)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~e~~ 500 (570)
++.++..++.++..+|+..++.
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=189.89 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=122.6
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 250 EKELGNEAYK----KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 250 ~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
++.+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+..|+++++.. + ..++
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~ 149 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D---GDGC 149 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C---HHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c---HHHH
Confidence 3445666666 77777777777777776 367777888888877 788888888888887765 3 5677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCC
Q psy3014 322 QRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGK 393 (570)
Q Consensus 322 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 393 (570)
..+|.+|.. .+++++|+.+|+++++ . .++.++..+|.++.. .++
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------~--~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACD--------------------------L--KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------------------------T--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHH--------------------------C--CCHHHHHHHHHHHHcCCCCCcc
Confidence 778888877 7888888888888776 3 245677788888888 888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+|+++++..|.++..+
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887755 7788888888888 8888888888888888877654433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=189.11 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDP-TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|++ ..++..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHH
Confidence 468999999999999999999999999999999 999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhH-------HHHHHHHHHHHHCCCHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKA-------EEAKERGNELFKNGKYADA 397 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A 397 (570)
|.++...|++++|+..|++++. ..|.++ .++..+|.++...|++++|
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--------------------------AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 9999999999999999999999 777777 6799999999999999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNPD--DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+..|+++++.+|+ ++.++..+|.++...|+ ..++++..+.+.....+ .+......+.+++|+.+|++++++
T Consensus 137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999 99999999999987654 45677777777765444 445566678899999999999999
Q ss_pred CCCcHHHHHHHHHHHHH
Q psy3014 476 DASNAEAVEGYRQCSIA 492 (570)
Q Consensus 476 ~p~~~~~~~~l~~~~~~ 492 (570)
+|+++.++..++.+...
T Consensus 210 ~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 210 SPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp CTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=204.13 Aligned_cols=320 Identities=12% Similarity=0.018 Sum_probs=248.8
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---Ccchh--hch--hHHHhcccCHHHHH-----------HHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT---NHILF--SNR--SAAFAKEGNYEKAL-----------EDAE 69 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~ 69 (570)
++.+...+.....++..+++++|...++++...-+. +.... +.+ .......++++.+. ..++
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 567888899999999999999999999998664322 33322 222 12222334444444 4444
Q ss_pred chhccCCCChh------HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCc
Q psy3014 70 KTISLKPDWPK------GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDP 143 (570)
Q Consensus 70 ~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
++ ...|.... .++.+|.++...|++++|+..|++++++.+..
T Consensus 89 ~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------- 136 (383)
T 3ulq_A 89 EI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV------------------------------- 136 (383)
T ss_dssp HH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------------------------------
T ss_pred HH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-------------------------------
Confidence 43 22333333 34559999999999999999999999863211
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
T Consensus 137 -------------------------------------------------------------------------------- 136 (383)
T 3ulq_A 137 -------------------------------------------------------------------------------- 136 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcC
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-------ITFQNNIAAVYFERKE 296 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~ 296 (570)
...+..+.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+
T Consensus 137 -----------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 199 (383)
T 3ulq_A 137 -----------------KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199 (383)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC
Confidence 0112456788889999999999999999999999985433 4688999999999999
Q ss_pred HHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 297 YDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 297 ~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
+++|+..++++++..+ +......++.++|.+|...|++++|+.++++++...+.. .
T Consensus 200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---------------------~ 258 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---------------------N 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------T
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------c
Confidence 9999999999997754 334456799999999999999999999999998732110 2
Q ss_pred C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCC
Q psy3014 374 D-PVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-----PDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPK 444 (570)
Q Consensus 374 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~ 444 (570)
+ |..+.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +++|+..+++. ...|.
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~ 337 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD 337 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH
Confidence 4 7789999999999999999999999999999874 3333446789999999999 88888888876 44455
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 445 FLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
...++..+|.+|..+|++++|..+|++++++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=211.06 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=208.8
Q ss_pred hHHhHHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCH-HHHHHHHhch
Q psy3014 7 LVYEVSLLKDKGNAALQAN--------------NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNY-EKALEDAEKT 71 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~--------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a 71 (570)
.....+.++..+..++..+ .+++|+..++++....|.++.+++.+|.++...|++ ++|+..|+++
T Consensus 50 l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a 129 (474)
T 4abn_A 50 LQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129 (474)
T ss_dssp HHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3445555666666665433 367888899999999999999999999999999999 9999999999
Q ss_pred hccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhh
Q psy3014 72 ISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 151 (570)
Q Consensus 72 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (570)
++++|+++.+|+.+|.+|...|++++|+..|+++++++|+ ..++..++.++....
T Consensus 130 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~------------------------ 184 (474)
T 4abn_A 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQ------------------------ 184 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCC------------------------
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhc------------------------
Confidence 9999999999999999999999999999999999999998 455555444443300
Q ss_pred CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy3014 152 DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKK 231 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
T Consensus 185 -------------------------------------------------------------------------------- 184 (474)
T 4abn_A 185 -------------------------------------------------------------------------------- 184 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------cCHHHHHHH
Q psy3014 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER--------KEYDQCIEQ 303 (570)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~ 303 (570)
.+......|++++|+..|+++++++|+++.+|..+|.++... |++++|+..
T Consensus 185 ---------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 185 ---------------------TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ---------------------cCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 000111238999999999999999999999999999999999 999999999
Q ss_pred HHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH
Q psy3014 304 YIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380 (570)
Q Consensus 304 ~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 380 (570)
|+++++.+| ++ +.++..+|.+|...|++++|+..|++++. .+|+++.+
T Consensus 244 ~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------l~p~~~~a 294 (474)
T 4abn_A 244 YAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAA--------------------------LDPAWPEP 294 (474)
T ss_dssp HHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHH
T ss_pred HHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHH
Confidence 999999999 77 99999999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 381 AKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
+..++.++...|++++|+..+.+
T Consensus 295 ~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 295 QQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=195.45 Aligned_cols=245 Identities=13% Similarity=0.103 Sum_probs=173.5
Q ss_pred HHhHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHccCCCCcchhhchhHHHhc-------ccCH-------HHHH
Q psy3014 8 VYEVSLLKDKGNAALQA----NNF----IEAIEAYSEAIKLDGTNHILFSNRSAAFAK-------EGNY-------EKAL 65 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~ 65 (570)
+.+...|......-... ++. ++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 34445555554443332 233 678888888888888888888888887763 4665 7888
Q ss_pred HHHhchhc-cCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHH-HHHHHHHHHHHhhhccCCCccccccCCCc
Q psy3014 66 EDAEKTIS-LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDVRNQEMNDMNRGDPFANLFSDP 143 (570)
Q Consensus 66 ~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
..|++++. ++|++..+|..+|.++...|++++|...|++++++.|.+.. ++
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------------------------- 137 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--------------------------- 137 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHH---------------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHH---------------------------
Confidence 88888888 68888888888888888888888888888888887776543 22
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCC
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKA 223 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (570)
T Consensus 138 -------------------------------------------------------------------------------- 137 (308)
T 2ond_A 138 -------------------------------------------------------------------------------- 137 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHH
Q psy3014 224 PSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE-RKEYDQCIE 302 (570)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~ 302 (570)
..+|.++.+.|++++|+..|+++++..|.+..++...+.+... .|++++|+.
T Consensus 138 ---------------------------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 138 ---------------------------IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp ---------------------------HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ---------------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3355555667778888888888888877777777665555433 577777777
Q ss_pred HHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHH
Q psy3014 303 QYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEA 381 (570)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 381 (570)
.|+++++.+|++ +.++..+|.++...|++++|+..|++++...+ ..|+ ...+|
T Consensus 191 ~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----------------------l~p~~~~~l~ 244 (308)
T 2ond_A 191 IFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----------------------LPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----------------------SCGGGCHHHH
T ss_pred HHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----------------------CCHHHHHHHH
Confidence 777777777777 77777777777777777777777777776211 2442 56667
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
..++..+...|++++|...++++++..|+++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 7777777777777777777777777777644
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-25 Score=214.13 Aligned_cols=338 Identities=10% Similarity=-0.008 Sum_probs=246.9
Q ss_pred HhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHccCCCCcchhhchhHHHhccc-----CHHHHHHHHhchhccCCCChh
Q psy3014 9 YEVSLLKDKGNAALQANNF---IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-----NYEKALEDAEKTISLKPDWPK 80 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~ 80 (570)
.++++++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|++++.. +++.
T Consensus 33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~ 107 (452)
T 3e4b_A 33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGN 107 (452)
T ss_dssp TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSS
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHH
Confidence 4566788899999999999 9999999999976 6789999999666655 899999999999984 5567
Q ss_pred HHhHHHHHHhhccCHHHH---HHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKES---ISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP 157 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
+++.+|.+|...+...++ ...+.++.. +.++.+...++.++............
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~---------------------- 163 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDD---------------------- 163 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHH----------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHH----------------------
Confidence 999999999988775554 444444433 34567888888888772221111000
Q ss_pred CCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy3014 158 FLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPED 237 (570)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (570)
... ......
T Consensus 164 ---------a~~--------------------~~~~a~------------------------------------------ 172 (452)
T 3e4b_A 164 ---------VER--------------------ICKAAL------------------------------------------ 172 (452)
T ss_dssp ---------HHH--------------------HHHHHT------------------------------------------
T ss_pred ---------HHH--------------------HHHHHH------------------------------------------
Confidence 000 000000
Q ss_pred cccchhHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhc
Q psy3014 238 KNLTDEQRSAKKEKELGNEAYKKK---NFEEALAHYNKAVEFDPTDITFQNNIAAVYFER----KEYDQCIEQYIQKIEN 310 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~ 310 (570)
..++.+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|... +++++|+..|+++.
T Consensus 173 ------~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-- 244 (452)
T 3e4b_A 173 ------NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-- 244 (452)
T ss_dssp ------TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--
T ss_pred ------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--
Confidence 022347889999999999 999999999999999999999999999999766 79999999999998
Q ss_pred ccChhHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy3014 311 RADFKLIAKALQRIGNC-Y--KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE 387 (570)
Q Consensus 311 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 387 (570)
|++ +.+++.+|.+ + ...+++++|+.+|+++.. +.++.+++.+|.+
T Consensus 245 -~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----------------------------~g~~~A~~~Lg~~ 292 (452)
T 3e4b_A 245 -PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRA----------------------------ADQPRAELLLGKL 292 (452)
T ss_dssp -GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH
T ss_pred -CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------------------------CCCHHHHHHHHHH
Confidence 777 8899999998 4 578999999999999976 3478899999999
Q ss_pred HHHCC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 388 LFKNG-----KYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 388 ~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 98 55 9999999999998 8999999999999887 3499999999999987 4568899999999985
Q ss_pred ----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 459 ----MQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 459 ----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+++.+|..+|+++.+.. ++.+...+..+...+.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~ 404 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLT 404 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 569999999999999865 5667777777755443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-23 Score=185.55 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=154.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--cccChhHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--NRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~l~~~~ 328 (570)
..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. ..|.. ..++..+|.++
T Consensus 75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~ 151 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHH
Confidence 34677777789999999999999999999999999999999999999999999999998 66766 88899999999
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..
T Consensus 152 ~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 205 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLR--------------------------LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205 (252)
T ss_dssp HHTTCHHHHHHHHHHHHH--------------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHHHHHh--------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999988 778888899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
|.++.++..++.++...|++++|...+++++...|+++.....
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999999999998876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-23 Score=189.92 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH-HHHHHHHHHHHcCCHHHHHHH
Q psy3014 263 FEEALAHYNKAVE-FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK-ALQRIGNCYKKMEDWKNAKVY 340 (570)
Q Consensus 263 ~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 340 (570)
+++|+..|++++. ++|++..+|..+|.++...|++++|...|+++++..|.+ .. +|..+|.++...|++++|+..
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID---PTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC---THHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC---ccHHHHHHHHHHHHhcCHHHHHHH
Confidence 5999999999999 799999999999999999999999999999999999988 55 899999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 341 FEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK-NGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
|++++. ..|....++...+.+... .|++++|+.+|+++++.+|+++.+|..+|
T Consensus 157 ~~~a~~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 210 (308)
T 2ond_A 157 FKKARE--------------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp HHHHHT--------------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh--------------------------cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999998 677777777766666543 79999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Q psy3014 420 ACYTKLAAFDLGLKDCETCLKL---DPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482 (570)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 482 (570)
.++...|++++|+..|++++.. .|+ ....|..++.++...|++++|...++++++..|++...
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 9999999999999999999995 553 77899999999999999999999999999999986543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=179.07 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=142.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHhh--cccChhHHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFER-KEYDQCIEQYIQKIE--NRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~l~~~~ 328 (570)
.+|.++...|++++|+.+|++++..+|.+..++..+|.++... |++++|+..++++++ ..|.. ..++..+|.++
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~ 123 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP---YIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH---HHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch---HHHHHHHHHHH
Confidence 4566666788888888888888888888888888888888888 888888888888888 44554 77888888888
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++..
T Consensus 124 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLA--------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887 677778888888888888888888888888888888
Q ss_pred C-CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 409 P-DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 409 p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
| .++..+..++.++...|+++.|..+++.+...+|+++.+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8 8888888888888888888888888888888888887765543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-23 Score=182.06 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=162.8
Q ss_pred chhH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHH
Q psy3014 241 TDEQ-RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAK 319 (570)
Q Consensus 241 ~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 319 (570)
...| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 111 (228)
T 4i17_A 35 KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN---AT 111 (228)
T ss_dssp HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HH
T ss_pred hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HH
Confidence 3344 6678888999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A 397 (570)
.+..++.++...|... ...+++++|+..+++++..+|. .+.++..+|.++...|
T Consensus 112 ~~~~~~~~~~~~g~~~-------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~----- 167 (228)
T 4i17_A 112 IEKLYAIYYLKEGQKF-------------------QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG----- 167 (228)
T ss_dssp HHHHHHHHHHHHHHHH-------------------HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhHHH-------------------HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----
Confidence 7788888777665433 4567889999999999999999 9999999999997654
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
...++++..+.+..+..+ .+......+.+++|+.+++++++++|+++.+...++.+...
T Consensus 168 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 168 ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 455677788877775554 44556678889999999999999999999999888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=214.27 Aligned_cols=173 Identities=23% Similarity=0.344 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.|++++++.++|.++..+|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---ADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 456666666666666666666666666666666666666666666666666666666666666666666666 66666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
++|.++..+|++++|+..|+++++ .+|+++.++.++|.++...|++++|+..|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~--------------------------l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ--------------------------INPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666665 556666666666666666666666666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
++++++|+++.++.++|.++..+|++++|++.+++++++.|+
T Consensus 136 ~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 666666666666666666666666666666666666555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=186.94 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=190.0
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCC---hh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PK 80 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 80 (570)
.+.++..++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45678999999999999999999999999999999998 8899999999999999999999999999998854 67
Q ss_pred HHhHHHHHHhh--------ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhC
Q psy3014 81 GYSRKGSALSY--------LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLD 152 (570)
Q Consensus 81 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (570)
+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~--------------------------- 143 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL--------------------------- 143 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH---------------------------
Confidence 89999999999 9999999999999999999987766554443322
Q ss_pred CCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy3014 153 PRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKP 232 (570)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (570)
T Consensus 144 -------------------------------------------------------------------------------- 143 (261)
T 3qky_A 144 -------------------------------------------------------------------------------- 143 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHh----------cCHHH
Q psy3014 233 AEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT---DITFQNNIAAVYFER----------KEYDQ 299 (570)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~ 299 (570)
.+.....++.+|.++...|++++|+..|+++++.+|+ .+.+++.+|.++... |++++
T Consensus 144 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 144 ----------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 1134556788999999999999999999999999998 467999999999977 99999
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 300 A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
|+..|+++++..|+++....+...++.++...++++.+.
T Consensus 214 A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 214 AVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999877888888888888877766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=209.58 Aligned_cols=176 Identities=22% Similarity=0.263 Sum_probs=170.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH
Q psy3014 276 FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355 (570)
Q Consensus 276 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 355 (570)
..|+++.++.++|.++..+|++++|+..|+++++++|++ ..++.++|.+|..+|++++|+..|+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--------- 71 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR--------- 71 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 478999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHH
Q psy3014 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435 (570)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 435 (570)
.+|+++.++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|
T Consensus 72 -----------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 72 -----------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp -----------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 436 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
+++++++|+++.++.++|.++..+|++++|.+.|++++++.|+..
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 999999999999999999999999999999999999999876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=197.14 Aligned_cols=240 Identities=12% Similarity=0.124 Sum_probs=195.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc---CC---CCcchhhchhHHHhcccCHHHHHHHHhchhccCCC-------Chh
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKL---DG---TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-------WPK 80 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 80 (570)
++.+|..++..|+|++|+..|++++.+ .| ..+.++..+|.+|...|++++|+..+++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344999999999999999999999987 22 24678999999999999999999999999988544 345
Q ss_pred HHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 81 GYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 81 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
++..+|.+|..+|++++|+..|++++++.+....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 219 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------------------------------------------- 219 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------------------------------------------
Confidence 8999999999999999999999999986543211
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 220 -------------------------------------------------------------------------------- 219 (383)
T 3ulq_A 220 -------------------------------------------------------------------------------- 219 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC-
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-----FD-PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD- 313 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~- 313 (570)
.+..+.++.++|.++...|++++|+.+|+++++ .+ |..+.++..+|.++...|++++|+..++++++..+.
T Consensus 220 --~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 220 --PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 124456778899999999999999999999999 46 778889999999999999999999999999977432
Q ss_pred -hhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy3014 314 -FKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389 (570)
Q Consensus 314 -~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (570)
++.....+..+|.++...|+ +++|+..+++.- ..|....++..+|.++.
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---------------------------LYADLEDFAIDVAKYYH 350 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---------------------------CHHHHHHHHHHHHHHHH
Confidence 11223346678888888888 666666666652 45666777888888888
Q ss_pred HCCCHHHHHHHHHHHHhcC
Q psy3014 390 KNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~~ 408 (570)
..|++++|..+|+++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 8888888888888888764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=181.25 Aligned_cols=198 Identities=16% Similarity=0.230 Sum_probs=165.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHH
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIR 354 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 354 (570)
...|.++..++.+|..++..|++++|+..|+++++..|+++....+++.+|.++...|++++|+..|++++...|
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----- 83 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----- 83 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-----
Confidence 457778888888888888888888888888888888887766677888888888888888888888888888544
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhcCCCCHHHH-----------
Q psy3014 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK--------NGKYADAVKEYTEAINRNPDDPKYY----------- 415 (570)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~----------- 415 (570)
.+|..+.+++.+|.++.. .|++++|+..|+++++..|+++.+.
T Consensus 84 ------------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 84 ------------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp ------------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred ------------------CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 344567788888888888 9999999999999999999876555
Q ss_pred ------HHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhhC
Q psy3014 416 ------SNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGWIRKGKILQGM----------QQQSKAIDAYEKALELD 476 (570)
Q Consensus 416 ------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~ 476 (570)
+.+|.+|...|++++|+..|++++...|+ .+.+++.+|.+|..+ |++++|+..|+++++.+
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999998 567899999999977 99999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHhcC
Q psy3014 477 ASNA---EAVEGYRQCSIAVSS 495 (570)
Q Consensus 477 p~~~---~~~~~l~~~~~~~~~ 495 (570)
|+++ .+...++.++..+++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 9995 455566666666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=187.09 Aligned_cols=320 Identities=17% Similarity=0.086 Sum_probs=241.3
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCcchhhchhHHHh----cccCHHHHH---------HHHhch
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDG---TNHILFSNRSAAFA----KEGNYEKAL---------EDAEKT 71 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~a 71 (570)
++.+...+..-..++..+++++|...++++...-+ .+.......+...+ ..+.+..+. ..++++
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 45667777777778999999999999998755322 23333322221111 122222222 333332
Q ss_pred hccC-C--C--ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHH
Q psy3014 72 ISLK-P--D--WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 146 (570)
Q Consensus 72 l~~~-p--~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (570)
-... | + ....++.+|..+...|++++|+..|++++++.+...
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------- 135 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--------------------------------- 135 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC---------------------------------
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC---------------------------------
Confidence 2111 1 1 123577899999999999999999999988643211
Q ss_pred HHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy3014 147 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSP 226 (570)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (570)
T Consensus 136 -------------------------------------------------------------------------------- 135 (378)
T 3q15_A 136 -------------------------------------------------------------------------------- 135 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhcCHHH
Q psy3014 227 PPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-------DITFQNNIAAVYFERKEYDQ 299 (570)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~ 299 (570)
..+..+.++..+|.++...|++++|+.++++++++.+. ...++..+|.++...|++++
T Consensus 136 ---------------~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 200 (378)
T 3q15_A 136 ---------------DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200 (378)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHH
Confidence 11256778889999999999999999999999987543 24578899999999999999
Q ss_pred HHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3014 300 CIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV 376 (570)
Q Consensus 300 A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 376 (570)
|+..++++++..+ +......++.++|.+|...|++++|+.++++++...+.. .+|.
T Consensus 201 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~ 259 (378)
T 3q15_A 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChh
Confidence 9999999997643 334557899999999999999999999999998732110 4566
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCCCHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNP-----DDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~ 448 (570)
.+.++..+|.++...|++++|+.+++++++..+ .....+..++.++...++ +.+|+..+++. ...|.....
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHH
Confidence 788999999999999999999999999999843 335567788888888888 88888888872 334445667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+..+|.+|...|++++|..+|+++++...
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-23 Score=191.19 Aligned_cols=215 Identities=17% Similarity=0.197 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR----- 311 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 311 (570)
..+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 55677888999999999999999999999987 35567889999999999999999999999999875
Q ss_pred cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHH
Q psy3014 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA-YIDPVKAEEAKERGNELFK 390 (570)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 390 (570)
++.+....++..+|.++...|++++|+.++++++.... +.. ...|....++..+|.++..
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ-------------------TKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------HTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------HHhCCCCHHHHHHHHHHHHHHHH
Confidence 44445588999999999999999999999999987310 000 0277788899999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCC---------C------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPD---------D------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 455 (570)
.|++++|+.+++++++..|. . ...+...+..+...+.+.+|...+.+++...|....++..+|.+
T Consensus 208 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 208 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 99999999999999976332 2 23444555566677778888899999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 456 LQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 456 ~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
|..+|++++|+.+|++++++.|+
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999885
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=181.56 Aligned_cols=323 Identities=10% Similarity=-0.007 Sum_probs=248.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-----hhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI-----LFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
++......+..+..+|..++..|++++|+..+++++...|.+.. ++..+|.++...|++++|+..+++++.+.|.
T Consensus 6 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 6 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 85 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh
Confidence 34445556788999999999999999999999999998876532 5788999999999999999999999988765
Q ss_pred Ch------hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhh
Q psy3014 78 WP------KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 151 (570)
Q Consensus 78 ~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (570)
.. .++..+|.++...|++++|+..+++++...+....
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------------------------------- 128 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL------------------------------------- 128 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-------------------------------------
Confidence 43 34788999999999999999999999875431100
Q ss_pred CCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy3014 152 DPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKK 231 (570)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (570)
T Consensus 129 -------------------------------------------------------------------------------- 128 (373)
T 1hz4_A 129 -------------------------------------------------------------------------------- 128 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy3014 232 PAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT-----DITFQNNIAAVYFERKEYDQCIEQYIQ 306 (570)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~ 306 (570)
...+.....+..+|.++...|++++|..++++++...|. ...++..+|.++...|++++|...+++
T Consensus 129 ---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 199 (373)
T 1hz4_A 129 ---------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199 (373)
T ss_dssp ---------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000134556677999999999999999999999998775 346788999999999999999999999
Q ss_pred HhhcccC--hhHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 307 KIENRAD--FKLIAKA--LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 307 ~l~~~~~--~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
++...+. .+..... ...++.++...|++++|...+.+++...+. ..+.....+.
T Consensus 200 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------~~~~~~~~~~ 257 (373)
T 1hz4_A 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA----------------------NNHFLQGQWR 257 (373)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT----------------------TCGGGHHHHH
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC----------------------cchhhHHHHH
Confidence 9876432 1111112 224556688999999999999999874321 0111234567
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.+|.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+.. .....+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~ 332 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFISHF 332 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHHHH
Confidence 8899999999999999999999876432 23478889999999999999999999998875421 122334
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
...| ......+++.+...|.+.
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCSCH
T ss_pred HHcc--HHHHHHHHHHHhCCCCch
Confidence 4444 677778888888888643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-23 Score=191.12 Aligned_cols=182 Identities=15% Similarity=0.232 Sum_probs=156.0
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCcchhhchhHHHhcccCHHHHHHHHhchhcc---
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL--------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--- 74 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 74 (570)
..|..+..+..+|..++..|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999995 6667889999999999999999999999999987
Q ss_pred -----CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHh
Q psy3014 75 -----KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQL 149 (570)
Q Consensus 75 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
.|....++..+|.++...|++++|+..|++++++.... .
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----------~-------------------------- 145 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV----------L-------------------------- 145 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH----------H--------------------------
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh----------c--------------------------
Confidence 46678899999999999999999999999998653100 0
Q ss_pred hhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy3014 150 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPA 229 (570)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (570)
T Consensus 146 -------------------------------------------------------------------------------- 145 (311)
T 3nf1_A 146 -------------------------------------------------------------------------------- 145 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHH
Q psy3014 230 KKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCI 301 (570)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~ 301 (570)
-...+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+
T Consensus 146 ----------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 146 ----------GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0001245677788999999999999999999999998 6667788999999999999999999
Q ss_pred HHHHHHhhcccC
Q psy3014 302 EQYIQKIENRAD 313 (570)
Q Consensus 302 ~~~~~~l~~~~~ 313 (570)
..++++++..+.
T Consensus 216 ~~~~~al~~~~~ 227 (311)
T 3nf1_A 216 TLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-21 Score=173.58 Aligned_cols=250 Identities=10% Similarity=0.042 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCcchhhchhHHHhccc--CHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 11 VSLLKDKGNAALQANNF-IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG--NYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
-...+.........|.+ ++|+..+.++|.++|++..+|+.++.++..+| .+++++..+++++..+|++..+|..++.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 34455555555666666 57888888888888888888888888888888 8888888888888888888888888888
Q ss_pred HH----hhc---cCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCC
Q psy3014 88 AL----SYL---GRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS 160 (570)
Q Consensus 88 ~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (570)
++ ... +++++++.++.++++.+|.+..+|...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R----------------------------------------- 150 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR----------------------------------------- 150 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH-----------------------------------------
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------------------------------------
Confidence 88 666 678888888888888888776666543
Q ss_pred ChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy3014 161 DPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240 (570)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (570)
T Consensus 151 -------------------------------------------------------------------------------- 150 (306)
T 3dra_A 151 -------------------------------------------------------------------------------- 150 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC------HHHHHHHHHHHhhccc
Q psy3014 241 TDEQRSAKKEKELGNEAYKKKNFE--EALAHYNKAVEFDPTDITFQNNIAAVYFERKE------YDQCIEQYIQKIENRA 312 (570)
Q Consensus 241 ~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~~l~~~~ 312 (570)
+.+....|.++ +++.+++++++.+|.|..+|..++.+....+. ++++++.+.+++..+|
T Consensus 151 -------------~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 151 -------------KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp -------------HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS
T ss_pred -------------HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC
Confidence 33333455555 78888888888888888888888888777776 7777777777777777
Q ss_pred ChhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 313 DFKLIAKALQRIGNCYKKMEDWKNA-KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
++ ..+|..++.++...|+...+ ..++.+++.... .+|.++.++..++.++.+.
T Consensus 218 ~n---~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 218 QN---PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-----------------------DQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SC---HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-----------------------TEESCHHHHHHHHHHHHHT
T ss_pred CC---ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-----------------------CCCCCHHHHHHHHHHHHcc
Confidence 77 77777777777777664443 334444444110 1255666666666666666
Q ss_pred CCHHHHHHHHHHHHh-cCCCCHHHHHHHHH
Q psy3014 392 GKYADAVKEYTEAIN-RNPDDPKYYSNRAA 420 (570)
Q Consensus 392 ~~~~~A~~~~~~al~-~~p~~~~~~~~la~ 420 (570)
|+.++|+++|+.+.+ .+|-....|...+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 666666666666664 56666666655543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-20 Score=192.53 Aligned_cols=315 Identities=15% Similarity=0.140 Sum_probs=242.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHH
Q psy3014 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYK 96 (570)
Q Consensus 17 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 96 (570)
.|.++...|.|++|..+|+++- .....+...+...|++++|+++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-------~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-------VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 4999999999999999999972 11112333444889999999999876 56889999999999999999
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCch
Q psy3014 97 ESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 176 (570)
Q Consensus 97 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (570)
+|+..|.++ ++.
T Consensus 1123 EAIdsYiKA-----dD~--------------------------------------------------------------- 1134 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDP--------------------------------------------------------------- 1134 (1630)
T ss_pred HHHHHHHhc-----CCh---------------------------------------------------------------
Confidence 999999775 333
Q ss_pred hHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q psy3014 177 LMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNE 256 (570)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 256 (570)
..+..+|.+
T Consensus 1135 -----------------------------------------------------------------------say~eVa~~ 1143 (1630)
T 1xi4_A 1135 -----------------------------------------------------------------------SSYMEVVQA 1143 (1630)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 334456777
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHH
Q psy3014 257 AYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336 (570)
Q Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (570)
+.+.|++++|+++|..+.+..++. .+...+|.+|.+++++++ ++.|. ..++ ...+..+|..+...|++++
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI----~~~n----~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFI----NGPN----NAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHH----hCCC----HHHHHHHHHHHHhcCCHHH
Confidence 777888888888888888776442 223357788888887774 44332 1222 3455578888888888888
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYS 416 (570)
Q Consensus 337 A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 416 (570)
|..+|.++-.-..-...+..+++++.|++.+.++ .+..+|...+.++...|+|..|..+... +.. +++.+.
T Consensus 1214 A~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLe 1284 (1630)
T 1xi4_A 1214 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELE 1284 (1630)
T ss_pred HHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHH
Confidence 8888888754444456666777788888888776 3458899999999999999999988774 433 455666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG--MQQQSKAIDAYEKALELDA-----SNAEAVEGYRQC 489 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~ 489 (570)
.++..|...|.+++|+.++++++.++|.+...+..+|.++.+ -++..++++.|...+.+.| ++...|..+..+
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999998888888887754 5688899999999999888 889999999999
Q ss_pred HHHhcCCHHHHH
Q psy3014 490 SIAVSSNPEEVR 501 (570)
Q Consensus 490 ~~~~~~~~e~~~ 501 (570)
|.+-|+.+.++.
T Consensus 1365 Y~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1365 YDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccHHHHHH
Confidence 999888665553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=170.39 Aligned_cols=199 Identities=8% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHh---cCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 262 NFEEALAHYNKAVEFDPTDITFQNNIAAVY----FER---KEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
++++++.+++.++..+|++..+|..++.++ ... +++++++..+.++++.+|.+ ..+|...+.+....|.+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---y~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---HHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccc
Confidence 555555555555555555555555555555 444 45566666666666666665 56666666666666655
Q ss_pred H--HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC------HHHHHHHHHHHHh
Q psy3014 335 K--NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK------YADAVKEYTEAIN 406 (570)
Q Consensus 335 ~--~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~ 406 (570)
+ +++.++.+++. .+|.+..+|...+.++...++ ++++++++.+++.
T Consensus 161 ~~~~EL~~~~~~i~--------------------------~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 161 NDAKELSFVDKVID--------------------------TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp TCHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 5 66666666665 666666666666666666665 8899999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-hCCCcHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDL-GLKDCETCLKLD---PKFLKGWIRKGKILQGMQQQSKAIDAYEKALE-LDASNAE 481 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~ 481 (570)
.+|++..+|+.++.++...|+... ....+.+++.++ |.++.++..+|.++.+.|+.++|+++|+.+.+ +||-...
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 999999999999999999998655 555777777776 88899999999999999999999999999996 8999999
Q ss_pred HHHHHHHH
Q psy3014 482 AVEGYRQC 489 (570)
Q Consensus 482 ~~~~l~~~ 489 (570)
.|...+..
T Consensus 295 yW~~~~~~ 302 (306)
T 3dra_A 295 FWDYQISK 302 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99876654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=164.93 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=133.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.||.++...|++++|+..+++++. .+|..+..++.+|.+|+..|++++|+.+|+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~ 55 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYIC 55 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 366777777777777777777777 899999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHH-HHHHHhhCCCcHH
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDA-YEKALELDASNAE 481 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~~ 481 (570)
++++++|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.
T Consensus 56 ~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 56 TYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999887765 5999999999999
Q ss_pred HHHHHHHHHHHhcC
Q psy3014 482 AVEGYRQCSIAVSS 495 (570)
Q Consensus 482 ~~~~l~~~~~~~~~ 495 (570)
++...+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999988875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=175.58 Aligned_cols=226 Identities=11% Similarity=0.090 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
.....+...|.++...|++++|+.+|.+++.+.+. ...++..+|.+|...|++++|+.+|++++++.+.. .
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 114 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34556777788999999999999999999998532 25789999999999999999999999999887643 2
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 316 LIAKALQRIGNCYKKM-EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
....++..+|.+|... |++++|+.+|++++...+... ..+....++..+|.++...|++
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------------------~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------------------SVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------------------ChHHHHHHHHHHHHHHHHhCCH
Confidence 3467899999999996 999999999999998322100 0011256789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHH--hCC
Q psy3014 395 ADAVKEYTEAINRNPDDPK-------YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG-----WIRKGKILQ--GMQ 460 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~--~~g 460 (570)
++|+.+|++++...|++.. ++.++|.++..+|++++|+..|++++.++|+.... +..++..+. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999887643 68899999999999999999999999999987653 445666664 567
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 461 QQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
++++|+..|++++.++|.+..++..+....
T Consensus 255 ~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp THHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 899999999999999999888877777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=151.66 Aligned_cols=121 Identities=53% Similarity=0.913 Sum_probs=116.7
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
+..++|+.+..+..+|..+++.|+|++|+..|+++++.+|.++.+|+++|.++..+|++++|+..|+++++++|+++.+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
+.+|.++..+|++++|+.+|+++++++|++++++..|+.|+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=201.72 Aligned_cols=184 Identities=8% Similarity=-0.075 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAV--------EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKL 316 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 316 (570)
.++.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 466 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-- 466 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--
Confidence 3444555555 67899999999999999 8889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
..+++.+|.++...|++++|+..|++++. .+|+++.++..+|.++...|++++
T Consensus 467 -~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 467 -WRLVWYRAVAELLTGDYDSATKHFTEVLD--------------------------TFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcCChHH
Confidence 88999999999999999999999999998 788888999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+++++|.++...|+
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999877665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-21 Score=182.77 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CcchhhchhHHHhcccCHHHHHHHHhchhccCCC-------C
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGT------NHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD-------W 78 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~ 78 (570)
..++.+|..++..|+|++|+..|++++...+. .+.+++.+|.+|...|++++|+..+++++.+.+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 36778999999999999999999999987432 3568899999999999999999999999987543 3
Q ss_pred hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 79 PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 79 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
..++..+|.++..+|++++|+..|++++++.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--------------------------------------------- 216 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--------------------------------------------- 216 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------------------------------------------
Confidence 45788999999999999999999999987532110
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
T Consensus 217 -------------------------------------------------------------------------------- 216 (378)
T 3q15_A 217 -------------------------------------------------------------------------------- 216 (378)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-----FDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 313 (570)
..+..+.++.++|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+..++++++..+.
T Consensus 217 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 217 ---NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0113456778899999999999999999999999 77888889999999999999999999999999977432
Q ss_pred --hhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy3014 314 --FKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNEL 388 (570)
Q Consensus 314 --~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (570)
++.....+..++.++...++ +.+|+..+++.- ..|.....+..+|.++
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---------------------------LHAYIEACARSAAAVF 346 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---------------------------ChhHHHHHHHHHHHHH
Confidence 11124456777888888888 677777766632 3455666777888888
Q ss_pred HHCCCHHHHHHHHHHHHhc
Q psy3014 389 FKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~ 407 (570)
...|++++|..+|+++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 8888888888888888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=175.75 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh-cCHHHHHHHHHHHhhcccCh---
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFER-KEYDQCIEQYIQKIENRADF--- 314 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~--- 314 (570)
..+.++.++|.++...|++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 346678889999999999999999999999987654 46889999999996 99999999999999987753
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
.....++..+|.++...|++++|+.+|++++...+.... ........+..+|.++...|++
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-------------------SQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------------------TGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------------------ccHHHHHHHHHHHHHHHHcCCH
Confidence 223568999999999999999999999999984432100 0001234788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH-----HHHHHHHHHH--HhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 395 ADAVKEYTEAINRNPDDPK-----YYSNRAACYT--KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
++|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.....+..+-...
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9999999999999998655 3445566554 456799999999999999998877766655444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-18 Score=179.55 Aligned_cols=309 Identities=13% Similarity=0.146 Sum_probs=242.9
Q ss_pred HcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHH
Q psy3014 23 QANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTY 102 (570)
Q Consensus 23 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 102 (570)
..|++++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ +++..|...|.++.+.|++++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777765 56899999999999999999999999886 78899999999999999999999999
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhc
Q psy3014 103 EEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKL 182 (570)
Q Consensus 103 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (570)
..+.+..++. .+...++.++......
T Consensus 1158 ~mArk~~~e~-~Idt~LafaYAKl~rl----------------------------------------------------- 1183 (1630)
T 1xi4_A 1158 QMARKKARES-YVETELIFALAKTNRL----------------------------------------------------- 1183 (1630)
T ss_pred HHHHhhcccc-cccHHHHHHHHhhcCH-----------------------------------------------------
Confidence 9999887543 1222355555441000
Q ss_pred cCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccC
Q psy3014 183 KDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKN 262 (570)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 262 (570)
..+..... . .+...+..+|..+...|+
T Consensus 1184 ------eele~fI~----------------------------------------------~-~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1184 ------AELEEFIN----------------------------------------------G-PNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred ------HHHHHHHh----------------------------------------------C-CCHHHHHHHHHHHHhcCC
Confidence 00000000 0 112455679999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFE 342 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 342 (570)
|++|..+|.++ ..|..+|.++.++|++++|++.+.++ .+ ..+|...+.++...|++..|..+..
T Consensus 1211 YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n---~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1211 YDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CC---HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999996 58899999999999999999999998 33 6889999999999999999999887
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 343 KSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422 (570)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 422 (570)
. +. .+| +.+..++..|...|.|++|+.+++.++.++|.+...+..+|.+|
T Consensus 1275 ~-Ii--------------------------v~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1275 H-IV--------------------------VHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred h-hh--------------------------cCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 5 33 333 34457888899999999999999999999988888887777777
Q ss_pred HH--hcChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCcHHHH
Q psy3014 423 TK--LAAFDLGLKDCETCLKLDP-----KFLKGWIRKGKILQGMQQQSKAIDAYEKALEL------------DASNAEAV 483 (570)
Q Consensus 423 ~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~ 483 (570)
.+ -++..++++.|...+.+.| ++...|..+..+|.+-|+++.|+..+-..... .+.|++++
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~ely 1404 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 1404 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHH
Confidence 65 5677888888888888777 67888889999999999999999555444433 67888888
Q ss_pred HHHHHHHHHhc
Q psy3014 484 EGYRQCSIAVS 494 (570)
Q Consensus 484 ~~l~~~~~~~~ 494 (570)
+.....+....
T Consensus 1405 ykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1405 YRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhhC
Confidence 88887777444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=164.47 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..++..|..+...|++++|+..|++++..+|+++.+++..+. . ............+|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------------~~~~~~~~~~~~lg 61 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------------KNSEISSKLATELA 61 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------------TTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------------chhhhhHHHHHHHH
Confidence 45666777778888888888888888888888777776655331 0 01111244556699
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.++...|++++|+..|++++. .+|+++.++..+|.++...|++++|+.+|++++
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQ--------------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAA--FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++|+++.+++++|.+|...|+ ...+...+++++...| ...+++.+|.++...|++++|+.+|+++++++|+. .+.
T Consensus 116 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~ 193 (208)
T 3urz_A 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQ 193 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHH
Confidence 9999999999999999987765 4567788888765433 23468889999999999999999999999999974 444
Q ss_pred HHHHHH
Q psy3014 484 EGYRQC 489 (570)
Q Consensus 484 ~~l~~~ 489 (570)
..+..+
T Consensus 194 ~~l~~i 199 (208)
T 3urz_A 194 KTLDKI 199 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=177.11 Aligned_cols=283 Identities=14% Similarity=0.058 Sum_probs=227.5
Q ss_pred chhhchhHHHhcccCHHHHHHHHhchhccCCCCh-----hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 46 ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 46 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 4567789999999999999999999999887643 2678899999999999999999999998755322111
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
T Consensus 91 -------------------------------------------------------------------------------- 90 (373)
T 1hz4_A 91 -------------------------------------------------------------------------------- 90 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD--- 277 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 277 (570)
....++..+|.++...|++++|+..+++++...
T Consensus 91 --------------------------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 91 --------------------------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 224456679999999999999999999999874
Q ss_pred -----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCC
Q psy3014 278 -----PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRT 350 (570)
Q Consensus 278 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 350 (570)
|....++..+|.++...|++++|...+++++...+.. .....++..+|.++...|++++|...+++++...+.
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3345677889999999999999999999999876542 123578889999999999999999999999874221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy3014 351 PEIRTLISEMEKKIKEEEKKAYIDPVKAEE--AKERGNELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYTK 424 (570)
Q Consensus 351 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 424 (570)
. ..+..... ....+.++...|++++|...+++++...|.. ...+..+|.++..
T Consensus 207 ~---------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 207 G---------------------KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp S---------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred c---------------------CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 0 11111111 1235566889999999999999998877653 3467889999999
Q ss_pred hcChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 425 LAAFDLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 425 ~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
.|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999876442 234778899999999999999999999998865
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=164.43 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=157.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCChh---HHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPK---GYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 83 (570)
.+..++.+|..++..|+|++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467899999999999999999999999999999875 68999999999999999999999999999999875 799
Q ss_pred HHHHHHhh------------------ccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchH
Q psy3014 84 RKGSALSY------------------LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNI 145 (570)
Q Consensus 84 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (570)
.+|.++.. .|++++|+..|+++++.+|++..+...+..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~-------------------- 142 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL-------------------- 142 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------------------
Confidence 99999876 6799999999999999999998765543333222
Q ss_pred HHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCC
Q psy3014 146 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPS 225 (570)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (570)
T Consensus 143 -------------------------------------------------------------------------------- 142 (225)
T 2yhc_A 143 -------------------------------------------------------------------------------- 142 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCHHHHHH
Q psy3014 226 PPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI---TFQNNIAAVYFERKEYDQCIE 302 (570)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~ 302 (570)
........+.+|.++...|++++|+..|+++++.+|+++ .++..+|.++..+|++++|+.
T Consensus 143 -----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 143 -----------------KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 002233445678888888888888888888888888875 578888888888888888888
Q ss_pred HHHHHhhcccCh
Q psy3014 303 QYIQKIENRADF 314 (570)
Q Consensus 303 ~~~~~l~~~~~~ 314 (570)
.++++....|++
T Consensus 206 ~~~~l~~~~~~~ 217 (225)
T 2yhc_A 206 VAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHCCSCC
T ss_pred HHHHHHhhCCCc
Confidence 888888777765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=159.82 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
...+..+|.++...|++++|+..++++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------- 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLA-------------- 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------
Confidence 3455566666666666666666666666666665 56666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++.
T Consensus 71 ------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 71 ------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 55666666666777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
..|.++.++..+|.++...|++++|..+++++++.+|++..
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 77777777777777777777777777777777777776543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=158.07 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 286 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
.||.++...|++++|+..+++++...|+. +..++.+|.+|...|++++|+.+|+++++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------- 59 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK---SIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------- 59 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH---HTTHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 46788888899999999999999888887 78888999999999999999999999998
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHH-HHHHHhcCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKD-CETCLKLDPK 444 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~ 444 (570)
.+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+
T Consensus 60 -------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 60 -------VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred -------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 88889999999999999999999999999999999999999999999999999998877665 5899999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q psy3014 445 FLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 445 ~~~~~~~l~~~~~~~g~ 461 (570)
++.++..++.++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999888875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=182.87 Aligned_cols=309 Identities=13% Similarity=0.125 Sum_probs=159.3
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 20 AALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 20 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.....|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ +++.++...+..+...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 344678899999999998 33569999999999999999999999764 45668999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 179 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
.+++.+.+..++ +.+...++.++...++.....+
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~--------------------------------------------- 115 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEE--------------------------------------------- 115 (449)
T ss_dssp ----------------------------CHHHHTT---------------------------------------------
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHH---------------------------------------------
Confidence 999988875433 4555555555544111110000
Q ss_pred hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH
Q psy3014 180 TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK 259 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 259 (570)
++ .. .+..++..+|..+..
T Consensus 116 -f~-----------------------------------------------------------~~-pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 116 -FI-----------------------------------------------------------NG-PNNAHIQQVGDRCYD 134 (449)
T ss_dssp -TT-----------------------------------------------------------TC-C--------------
T ss_pred -HH-----------------------------------------------------------cC-CcHHHHHHHHHHHHH
Confidence 00 00 112378889999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
.|+|++|..+|.++ ..|..+|.++.++|++++|++.++++ ++ +.+|...+.++...|+++.|..
T Consensus 135 ~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 135 EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp --CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHH
Confidence 99999999999987 47889999999999999999999999 24 7889999999999999999977
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
+... +. .+|+.. ..++..|.+.|++++|+.++++++.+++.+...+..+|
T Consensus 199 ~~l~-L~--------------------------~~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~ 248 (449)
T 1b89_A 199 CGLH-IV--------------------------VHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 248 (449)
T ss_dssp TTTT-TT--------------------------TCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHH-HH--------------------------hCHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 6654 22 455553 35788899999999999999999999999999999999
Q ss_pred HHHHH--hcChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCcH
Q psy3014 420 ACYTK--LAAFDLGLKDCETCLKLDP-----KFLKGWIRKGKILQGMQQQSKAIDAYEKALEL------------DASNA 480 (570)
Q Consensus 420 ~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~ 480 (570)
.+|.+ -++..+.++.|...+.+.| .++..|..+..+|.+.++++.|+..+-..... .+.|.
T Consensus 249 il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~ 328 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV 328 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSST
T ss_pred HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHH
Confidence 88865 5677888888888888878 78889999999999999999999887776655 67888
Q ss_pred HHHHHHHHHHH
Q psy3014 481 EAVEGYRQCSI 491 (570)
Q Consensus 481 ~~~~~l~~~~~ 491 (570)
++++.....+.
T Consensus 329 elyYkai~fyl 339 (449)
T 1b89_A 329 ELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=197.82 Aligned_cols=188 Identities=13% Similarity=0.002 Sum_probs=176.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------hcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKI--------ENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
..+|+++.+++..| ...|++++|+..+++++ +.+|++ ..++..+|.++...|++++|+..|++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 45888888888777 78999999999999999 888998 89999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 347 EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 347 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|
T Consensus 462 --------------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 462 --------------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG 515 (681)
T ss_dssp --------------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred --------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++++ +..|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++.+++.++...+.
T Consensus 516 ~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999 9999999999999999999999999999999999999999999999999999999999877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-20 Score=157.27 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
.....+..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|++ ..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ 82 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---VKVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|+.+++++
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAE--------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHh--------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999999999998 78888999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHH
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLK 447 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 447 (570)
+...|.++.++..+|.++...|++++|+..+++++..+|++..
T Consensus 137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999999999999999999887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=161.31 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH
Q psy3014 238 KNLTDEQRSAKKEKE----------------LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 301 (570)
..+...|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 29 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 108 (208)
T 3urz_A 29 QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108 (208)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344556777777777 6777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMED--WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
..|+++++++|++ +.+++.+|.+|...|+ ...+...+++++. ..|. ..
T Consensus 109 ~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~-~~ 158 (208)
T 3urz_A 109 RMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------------------------PTKM-QY 158 (208)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---C--------------------------CCHH-HH
T ss_pred HHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--------------------------CCch-hH
Confidence 7777777777766 6666666666655443 2333444444332 2222 22
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
+++.+|.++...|++++|+.+|+++++++|+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4445555555555555555555555555554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=157.93 Aligned_cols=194 Identities=11% Similarity=0.068 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++.....+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999887 478999999999999999999999999999999876677999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...+.. .+.. +..++..+...|++++|+..|+
T Consensus 83 ~~g~~~~~~~~~-----~~~~-------------------------------------~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQG-------------------------------------FFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHC--------------------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhhh-------------------------------------hhccchhhcCcHHHHHHHHHHH
Confidence 999999877642 1111 2223444445555666666666
Q ss_pred HHHhcCCCCHHH-----------------HHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCCH
Q psy3014 403 EAINRNPDDPKY-----------------YSNRAACYTKLAAFDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQQ 462 (570)
Q Consensus 403 ~al~~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~ 462 (570)
++++..|+++.+ ...+|.+|...|++++|+..|+++++..|+++ .+++.+|.++.++|++
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 666665555433 26789999999999999999999999999876 6799999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHH
Q psy3014 463 SKAIDAYEKALELDASNAE 481 (570)
Q Consensus 463 ~~A~~~~~~al~~~p~~~~ 481 (570)
++|+..++++....|++.+
T Consensus 201 ~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 201 AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHhhCCCchh
Confidence 9999999999999988643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=166.78 Aligned_cols=164 Identities=21% Similarity=0.241 Sum_probs=141.6
Q ss_pred HccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----cChhHHHHHHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----ADFKLIAKALQRIG 325 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~l~ 325 (570)
..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+..++++++.. ++++....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 468888888888888874 35668899999999999999999999999999775 44455589999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.++...|++++|+.+|++++... ++... .+|....++..+|.++...|++++|+.+++++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR-------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH-------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH-------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998731 11111 25788999999999999999999999999999
Q ss_pred Hhc--------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 405 INR--------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 405 l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
++. .|....++..+|.++...|++++|+..+++++..
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998 6667789999999999999999999999999976
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=146.14 Aligned_cols=117 Identities=32% Similarity=0.551 Sum_probs=113.5
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.|..++.+..+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998887763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-18 Score=155.34 Aligned_cols=177 Identities=12% Similarity=0.003 Sum_probs=154.4
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHccCCCCcchhhchhHHHhcccC----------HHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 18 GNAALQANNFI-EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN----------YEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 18 g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.......|+++ +|+..+.+++..+|++..+|..++.++...+. +++++.+++.++..+|++..+|..++
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33445678776 89999999999999999999999999988876 78999999999999999999999999
Q ss_pred HHHhhccC--HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHH
Q psy3014 87 SALSYLGR--YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164 (570)
Q Consensus 87 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (570)
.++...|+ +++++.++.++++.+|.|..+|.....+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v------------------------------------------ 153 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV------------------------------------------ 153 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------------------------------------
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------------
Confidence 99999994 8999999999999999998877654433
Q ss_pred HHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhH
Q psy3014 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQ 244 (570)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (570)
T Consensus 154 -------------------------------------------------------------------------------- 153 (331)
T 3dss_A 154 -------------------------------------------------------------------------------- 153 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHhh
Q psy3014 245 RSAKKEKELGNEAYKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFER--------------KEYDQCIEQYIQKIE 309 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~~l~ 309 (570)
....|. +++++.++.++++.+|.|..+|..++.++... +.++++++++.+++.
T Consensus 154 ------------l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 154 ------------AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp ------------HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 334555 68999999999999999999999999999887 568999999999999
Q ss_pred cccChhHHHHHHHHHHHHHHHc
Q psy3014 310 NRADFKLIAKALQRIGNCYKKM 331 (570)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~ 331 (570)
.+|++ ..+|+.+..++...
T Consensus 222 ~~P~d---~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 222 TDPND---QSAWFYHRWLLGAG 240 (331)
T ss_dssp HSTTC---HHHHHHHHHHHHSS
T ss_pred hCCCC---HHHHHHHHHHHHhc
Confidence 99999 88887665555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=145.66 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHH
Q psy3014 353 IRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 353 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 432 (570)
+...+.++..+...+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.+|+++|.++...|++++|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 33444444445555666677999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 433 KDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 433 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
..|++++.++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 91 ~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 91 DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=166.93 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=176.8
Q ss_pred HHcCCHHHHHHHHHHHHcc--------CCCCcchhhchhHHHhcccCHHHHHHHHhchhcc--------CCCChhHHhHH
Q psy3014 22 LQANNFIEAIEAYSEAIKL--------DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISL--------KPDWPKGYSRK 85 (570)
Q Consensus 22 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 85 (570)
...|++++|+..|+++++. +|..+.++..+|.++...|++++|+..+++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567888888888888874 3566888999999999999999999999999977 46678899999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV 165 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (570)
|.++...|++++|+..|++++.......
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------------- 119 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVL---------------------------------------------------- 119 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHc----------------------------------------------------
Confidence 9999999999999999999987521000
Q ss_pred HHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHH
Q psy3014 166 QMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQR 245 (570)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (570)
....|.
T Consensus 120 --------------------------------------------------------------------------~~~~~~ 125 (283)
T 3edt_B 120 --------------------------------------------------------------------------GKFHPD 125 (283)
T ss_dssp --------------------------------------------------------------------------CTTCHH
T ss_pred --------------------------------------------------------------------------CCCChH
Confidence 001135
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEF--------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--- 314 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--- 314 (570)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++..+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5677888999999999999999999999998 67778899999999999999999999999999764321
Q ss_pred ---hHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 315 ---KLIAKALQRIGNCYKKMEDWK------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 315 ---~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
......+..++..+...+... .+...++.... ..|..+.++..+|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~la 259 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--------------------------DSPTVNTTLRSLG 259 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--------------------------CCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHH
Confidence 111445555565555443322 22222222222 5577777888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhc
Q psy3014 386 NELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~ 407 (570)
.++...|++++|+.+|+++++.
T Consensus 260 ~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 260 ALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-17 Score=151.10 Aligned_cols=207 Identities=11% Similarity=0.056 Sum_probs=185.3
Q ss_pred HHccCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 258 YKKKNFE-EALAHYNKAVEFDPTDITFQNNIAAVYFERKE----------YDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 258 ~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|.++ +|+.++.+++.++|++..+|..++.++...+. +++++..+..++..+|.+ ..+|...+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn---y~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 4566666 89999999999999999999999999988876 789999999999999999 999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC-HHHHHHHHHH
Q psy3014 327 CYKKMED--WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK-YADAVKEYTE 403 (570)
Q Consensus 327 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~ 403 (570)
++...+. +++++.++.+++. .+|.+..+|...+.+....|. +++++.++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~--------------------------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 9999994 8999999999998 899999999999999999999 6999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh--------------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC----------
Q psy3014 404 AINRNPDDPKYYSNRAACYTKL--------------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM---------- 459 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------- 459 (570)
+++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 171 ~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 171 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHH
Confidence 9999999999999999999988 6689999999999999999999998666666555
Q ss_pred -CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 460 -QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 460 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
+.++++++++++++++.|++.-.+..++.+...+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~ 285 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRAL 285 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhh
Confidence 4589999999999999999966665555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=156.92 Aligned_cols=225 Identities=8% Similarity=-0.042 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHhcCHHHHHHHHHHHhhcccChh--
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNI-------AAVYFERKEYDQCIEQYIQKIENRADFK-- 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~-- 315 (570)
+....++..|.-+ ..+++..|...|.+++..+|+.+++|..+ +.++...+++.+++..+++.+.+.|..-
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3455667777776 68999999999999999999999999999 8999999999999999999998777651
Q ss_pred ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 316 ----------------LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 316 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
....+...++.++...|++++|...|..++. ..|...
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------------------------~~p~~~- 136 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------------------------AGSEHL- 136 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------------------------TTCHHH-
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------------------cCCchH-
Confidence 1245666788999999999999999999988 788888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CC-CHHHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDD--PKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PK-FLKGWIRKGK 454 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~ 454 (570)
..+.+|.+++..++|++|+.+|+.+....+.. ..+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999999999999999999999887653221 3589999999999999999999999998654 65 6679999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHH
Q psy3014 455 ILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e 498 (570)
++.++|+.++|...|++++..+|+ ..++..|...-..+.-+..
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~~t~~ 259 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLKTTTA 259 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCCCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCCCCcH
Confidence 999999999999999999999999 8888777655444443333
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-17 Score=163.10 Aligned_cols=451 Identities=9% Similarity=-0.036 Sum_probs=255.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC---HHHHHHHHhchhccCC--C
Q psy3014 3 NLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN---YEKALEDAEKTISLKP--D 77 (570)
Q Consensus 3 ~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~ 77 (570)
.+...|.+...|..........++++.|...|++++...|.....|...+....+.|+ ++.+...|++++...| .
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 4567788899999999999999999999999999999999999999999988888888 9999999999999984 5
Q ss_pred ChhHHhHHHHHHhhccCH----HH----HHHHHHHhhcc----CCCcHHHHHHHHHHHHHh---------hhccCCCccc
Q psy3014 78 WPKGYSRKGSALSYLGRY----KE----SISTYEEGLKL----DPNNEQMKEAIKDVRNQE---------MNDMNRGDPF 136 (570)
Q Consensus 78 ~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~ 136 (570)
++..|..........++. ++ ....|++|+.. ++....+|.......... .....+...+
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 677887777666555543 33 34778887753 666667776665543320 0000000111
Q ss_pred cccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccC--cc------HHHHHHHHhcCcccCCCCCCCC
Q psy3014 137 ANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKD--PR------MMTTLSVLLGVNMSSTMGDGDA 208 (570)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~ 208 (570)
.+++ ..|.......-..|......+ +.......+.. +. ....+..... .+...
T Consensus 218 ~raL----------~iP~~~~~~~w~~Y~~fe~~~--~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~------ 278 (679)
T 4e6h_A 218 KTLL----------CQPMDCLESMWQRYTQWEQDV--NQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRN------ 278 (679)
T ss_dssp HHHT----------TSCCSSHHHHHHHHHHHHHHH--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCC------
T ss_pred HHHH----------hCccHHHHHHHHHHHHHHHhc--CcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhc------
Confidence 1111 111100000001111111111 01001000000 00 0011111111 00000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCH
Q psy3014 209 EEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKK-------NFEEALAHYNKAVEFDPTDI 281 (570)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~ 281 (570)
.+...........|. . .. ........|......-...+ ..+.....|++++...|.++
T Consensus 279 -----~p~~~~~~~~~~~p~----~----~~--~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~ 343 (679)
T 4e6h_A 279 -----LPITLNQATESNLPK----P----NE--YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP 343 (679)
T ss_dssp -----CCSSSTTCCTTTSCC----T----TC--CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred -----cccccccchhccCCC----C----ch--hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence 000000000000000 0 00 12233455555544433322 13456788999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCI-EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
.+|+..+..+...|+.++|. ..|++++...|.+ ...+...+.+....|+++.|...|++++...+.. ....
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~-----~~~~ 415 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS---AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD-----LAAL 415 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-----hhhh
Confidence 99999999999999999997 9999999999988 7889999999999999999999999998732100 0000
Q ss_pred HHHHHH-HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcC-hHHHHHHHHH
Q psy3014 361 EKKIKE-EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-NPDDPKYYSNRAACYTKLAA-FDLGLKDCET 437 (570)
Q Consensus 361 ~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~ 437 (570)
...... -............+|...+....+.|..+.|...|.+|++. .+....+|...|.+....++ ++.|...|+.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 000000 00000000123345555555555556666666666666655 32334455555555444433 5666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhcC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA---SNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~ 495 (570)
+++..|+++..|...+......|+.+.|...|++++...| ....+|..+.......|+
T Consensus 496 ~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6666666666555555555556666666666666666555 344555556555555555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=174.24 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=157.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
+.+..|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..|+ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44579999999999999999999999774 46678999999999999999999999999986544 7788889999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI 168 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (570)
|.++|++.++.+.++. |+ ..++..++..+...+....+...+
T Consensus 104 Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y-------------------------------- 145 (449)
T 1b89_A 104 LAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLY-------------------------------- 145 (449)
T ss_dssp -----CHHHHTTTTTC-----C-----------------CTTTHHHHH--------------------------------
T ss_pred HHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 9999999999887752 43 346777766665522222211111
Q ss_pred HHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHH
Q psy3014 169 KEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAK 248 (570)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (570)
..+.
T Consensus 146 ----------------------------------------------------------------------------~~a~ 149 (449)
T 1b89_A 146 ----------------------------------------------------------------------------NNVS 149 (449)
T ss_dssp ----------------------------------------------------------------------------HHTT
T ss_pred ----------------------------------------------------------------------------HHhh
Confidence 1223
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
.+..+|.++.+.|++++|++.++++ +++..|...+.++...|+++.|..+... +...|+. ...+..+|
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------l~~lv~~Y 217 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------LEELINYY 217 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------HHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------HHHHHHHH
Confidence 4678999999999999999999999 5899999999999999999999887775 3456654 33588899
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK--NGKYADAVKEYTEAIN 406 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~ 406 (570)
.+.|++++|+.++++++. .++.....+..+|.++.+ -++..+.++.|...+.
T Consensus 218 ek~G~~eEai~lLe~aL~--------------------------le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in 271 (449)
T 1b89_A 218 QDRGYFEELITMLEAALG--------------------------LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 271 (449)
T ss_dssp HHTTCHHHHHHHHHHHTT--------------------------STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC
T ss_pred HHCCCHHHHHHHHHHHhC--------------------------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999 667777777777777654 3456666666666666
Q ss_pred cCC-----CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3014 407 RNP-----DDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------DPKFLKGWIRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 407 ~~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (570)
+.| .++..|..+..+|...++|+.|+...-..... .+.+.+.++.....|. +....++..+
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~l 349 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDL 349 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHH
Confidence 666 66677788888888888888887766554333 4566777777666666 5556667777
Q ss_pred HHHH--hhCC
Q psy3014 470 EKAL--ELDA 477 (570)
Q Consensus 470 ~~al--~~~p 477 (570)
..++ .+||
T Consensus 350 l~~l~~~ld~ 359 (449)
T 1b89_A 350 LMVLSPRLDH 359 (449)
T ss_dssp HHHHGGGCCH
T ss_pred HHHHHhccCc
Confidence 7777 4444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=152.25 Aligned_cols=207 Identities=9% Similarity=-0.070 Sum_probs=168.1
Q ss_pred HHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 254 GNEAYKKK-NFEEALAHYNKAVEFDPTDITFQNNIAAVYFER-K-EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 254 a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
+.++...| .+++++.++++++..+|++..+|..++.++... + ++++++..+.++++.+|.+ ..+|...+.+...
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN---y~AW~~R~wvl~~ 171 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN---YHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Confidence 33333455 488888889999988999999998888888887 7 8888999999999888888 8888888888888
Q ss_pred cCCHH--------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC-------HH
Q psy3014 331 MEDWK--------NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK-------YA 395 (570)
Q Consensus 331 ~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 395 (570)
.|.++ +++.++.+++. .+|.+..+|..++.++...++ ++
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~--------------------------~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLR--------------------------VDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred hccccccchhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 77766 67777777776 899999999999999999987 79
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh--------------------HHHHHHHHHHHhcC------CCCHHHH
Q psy3014 396 DAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF--------------------DLGLKDCETCLKLD------PKFLKGW 449 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~------p~~~~~~ 449 (570)
++++++.+++..+|++..+|+.+..++...|+. ..-...+...+... +.++.++
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 999999999999999999999999999988875 22233333333222 4678899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKAL-ELDASNAEAVEGYRQC 489 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~ 489 (570)
..++.+|...|+.++|.+.++... +.||-....|...+..
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 999999999999999999999987 7899988888766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=151.04 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 282 TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 282 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
..++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~~--------------- 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSR---GDVKLAKADCLLETKQFELAQELLATIPL--------------- 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS---HHHHHHHHHHHHHTTCHHHHHHHHTTCCG---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHhhh---------------
Confidence 334455555555555555555555555555555 55555555555555555555555555554
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 362 KKIKEEEKKAYIDPVKAEEAKERGNELF-KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..| ++..+...+.+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 69 -----------~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 69 -----------EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -----------GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333 3333333332211 112233466777777777777777777777777777777777777777777
Q ss_pred cCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 441 LDPKF--LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 441 ~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|+. +.++..+|.++..+|+.++|+..|++++.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 77664 44677777777777777777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-19 Score=149.77 Aligned_cols=171 Identities=7% Similarity=0.052 Sum_probs=132.7
Q ss_pred CCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3014 41 DGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120 (570)
Q Consensus 41 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 120 (570)
+|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.....++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4555667788888888888888888888888888888888888888888888888888888888888888 654433222
Q ss_pred HHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCccc
Q psy3014 121 DVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMS 200 (570)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
.+..
T Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (176)
T 2r5s_A 81 KLEL---------------------------------------------------------------------------- 84 (176)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy3014 201 STMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (570)
...+...+|+..|+++++.+|++
T Consensus 85 ---------------------------------------------------------~~~~~~~~a~~~~~~al~~~P~~ 107 (176)
T 2r5s_A 85 ---------------------------------------------------------HQQAAESPELKRLEQELAANPDN 107 (176)
T ss_dssp ---------------------------------------------------------HHHHTSCHHHHHHHHHHHHSTTC
T ss_pred ---------------------------------------------------------HhhcccchHHHHHHHHHHhCCCC
Confidence 01122235788899999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 281 ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 281 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
+.+++.+|.++...|++++|+..|+++++.+|+... ..++..+|.++...|+.++|+..|++++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999998886411 45888899999999999999999988875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=150.94 Aligned_cols=259 Identities=10% Similarity=0.012 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhccc-CHHHHHHHHhchhccCCCChhHHhHHHHHHhh
Q psy3014 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKTISLKPDWPKGYSRKGSALSY 91 (570)
Q Consensus 13 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 91 (570)
++-.........+..++|+..+.++|.++|++..+|..++.++..+| .+++++..+++++..+|++..+|..++.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344444445556679999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred c-c-CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 92 L-G-RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 92 ~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
. + ++++++.++.++++.+|.|..+|.....+....+.....
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~------------------------------------- 178 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI------------------------------------- 178 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc-------------------------------------
Confidence 8 8 999999999999999999999988776666541100000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
T Consensus 179 -------------------------------------------------------------------------------- 178 (349)
T 3q7a_A 179 -------------------------------------------------------------------------------- 178 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-------HHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKE-------YDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
....+.+++++++++++.+|.|..+|..++.++...+. ++++++++++++..+|++ ..+|.
T Consensus 179 ---------~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n---~SaW~ 246 (349)
T 3q7a_A 179 ---------SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN---VSAWN 246 (349)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred ---------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC---HHHHH
Confidence 00124589999999999999999999999999999887 799999999999999999 89999
Q ss_pred HHHHHHHHcCCH--------------------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy3014 323 RIGNCYKKMEDW--------------------KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAK 382 (570)
Q Consensus 323 ~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 382 (570)
.+..++...|.. ..-.......+..... ....+..+.++.
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~s~~al~ 306 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP--------------------EDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC--------------------SSCCSCCHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc--------------------cccCCCcHHHHH
Confidence 988888877764 1111111111110000 001245566666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAI-NRNPDDPKYYSNRAA 420 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~ 420 (570)
.++.++...|+.++|.++++... +.+|-....|...+.
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 66777766677667777666665 446655555554443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=155.34 Aligned_cols=169 Identities=11% Similarity=0.083 Sum_probs=151.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 277 DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 277 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
.|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~---------- 179 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPL---------- 179 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCch----------
Confidence 38888899999999999999999999999999999998 88999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 357 ISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 357 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.+|+........+..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.
T Consensus 180 ----------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 180 ----------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp ----------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 6676666667777778888888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 437 TCLKLDPKF--LKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 437 ~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
+++..+|++ ..++..+|.++...|+.++|...|++++.
T Consensus 244 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 244 GHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999988 88899999999999999999999998875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-18 Score=137.27 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=116.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 367 EEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+++++..+|.++..++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44555599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.+++.+|.++..+|++++|+.+|+++++++|+++........+...+
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999877655555444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-18 Score=154.61 Aligned_cols=168 Identities=10% Similarity=0.003 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+. ......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT---RYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH---HHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch---HHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999977 677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTE 403 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 403 (570)
.+..+...++.++|+..+++++. .+|+++.+++.+|.++...|++++|+..|.+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~--------------------------~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVA--------------------------ENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHh--------------------------cCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 78888899999999999999999 8999999999999999999999999999999
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 404 AINRNPDD--PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 404 al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
+++.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999998 88999999999999999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=169.84 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=118.3
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++ ..++..+|.++...|++++|+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHH
Confidence 4677888888888888888888888888888888888888888888888888887 7788888888888888888888
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA 419 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 419 (570)
.|++++. .+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 79 ~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 79 LLQQASD--------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888877 67777778888888888888888888888888888888888888888
Q ss_pred HHHHHh---cChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 420 ACYTKL---AAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 420 ~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
.++... |++++|+..++++++.+|++...+..++
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 888888 8888888888888888887776666555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=155.95 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.+|.. |++++|+.+|++++...+.. ...+....++..+|.++...|++++|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------------ERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------------CChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666 66666666666666521100 00011245566666667777777777
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 398 VKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 398 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
+.+|++++.+.|.+ ..++..+|.++...|++++|+..|++++ ++|..
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 77777666654432 2355666666666666666666666666 66654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=171.03 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=141.8
Q ss_pred hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3014 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373 (570)
Q Consensus 294 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 373 (570)
.|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|+++++ .
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------~ 52 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLA--------------------------L 52 (568)
T ss_dssp -------------------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT--------------------------T
T ss_pred CccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------h
Confidence 478999999999999999999 89999999999999999999999999999 8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 454 KILQGM---QQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 454 ~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
.++..+ |++++|...|+++++.+|++...+..++
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999 9999999999999999999887776666
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-17 Score=141.14 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcC----CHHHHHH
Q psy3014 264 EEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKME----DWKNAKV 339 (570)
Q Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 339 (570)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+..|+++.+. .+ +.+++.+|.+|.. + ++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~---~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD---GDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC---HHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4678899999875 78999999999999999999999999999875 45 7899999999998 7 8999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCC--CCHH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRNP--DDPK 413 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p--~~~~ 413 (570)
+|+++.. +.++.+++.+|.++.. .+++++|+.+|+++.+..| .++.
T Consensus 75 ~~~~A~~----------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 75 LAEKAVE----------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHH----------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHH----------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 9999965 4578899999999988 8999999999999999887 3589
Q ss_pred HHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 414 YYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-Q-----QQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 414 ~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++++|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|... | ++++|+.+|+++.+.. ++.+.
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~ 203 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGC 203 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHH
Confidence 99999999999 88999999999999998 77788999999999764 3 9999999999999884 56666
Q ss_pred HHHHHH
Q psy3014 484 EGYRQC 489 (570)
Q Consensus 484 ~~l~~~ 489 (570)
..++.+
T Consensus 204 ~~l~~l 209 (212)
T 3rjv_A 204 EEFDRI 209 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=135.72 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=117.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+++++..+|.+...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34455559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 446 LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+.+++.+|.++..+|++++|+.+|+++++++|+++........+...+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887776666655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-19 Score=167.27 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=172.5
Q ss_pred HcCCHHHHHHHHHH----HHccCCCCcchhhchhHHHh------------cccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 23 QANNFIEAIEAYSE----AIKLDGTNHILFSNRSAAFA------------KEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 23 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
..+.+++|+..++. ++.++|.. +|..+|.... .++++++|+..+++++..+|+.+.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578999999999 99999986 5666665543 678899999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ 166 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (570)
.++...|++++|+..|+++++++|++.....
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------------------------------------------- 185 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------------------------------------------- 185 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-------------------------------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCCh-------------------------------------------------
Confidence 9999999999999999999999997631000
Q ss_pred HHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHH
Q psy3014 167 MIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRS 246 (570)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (570)
.......+..
T Consensus 186 ----------------------------------------------------------------------~~~~~~~~~~ 195 (336)
T 1p5q_A 186 ----------------------------------------------------------------------EEAQKAQALR 195 (336)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0001112355
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
+.++.++|.++...|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..++..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCHHHH-HHHHHHHhc
Q psy3014 327 CYKKMEDWKNA-KVYFEKSMS 346 (570)
Q Consensus 327 ~~~~~~~~~~A-~~~~~~~~~ 346 (570)
++...|++++| ...|++++.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 556777765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=150.85 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=158.6
Q ss_pred ccCHHHHHHHHHHHHhcCCC-------C----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---hhHHHHHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPT-------D----ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---FKLIAKALQRIG 325 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~-------~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~l~ 325 (570)
.|++++|..+++++.+..+. + ...+...|.+|...|++++|+..|.+++.+.+. ......++..+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555666666655543221 1 123444578899999999999999999977543 234477899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEA 404 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 404 (570)
.+|...|++++|+.+|++++...+.. .++ ....++..+|.++.. |++++|+.+|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~---------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVEN---------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTT---------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999999999999743210 122 246788899999998 9999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3014 405 INRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIRKGKILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 405 l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a 472 (570)
+.+.|.. ..++.++|.++..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987643 5689999999999999999999999999986543 347888999999999999999999999
Q ss_pred HhhCCCcHH
Q psy3014 473 LELDASNAE 481 (570)
Q Consensus 473 l~~~p~~~~ 481 (570)
+ ++|+...
T Consensus 222 l-~~p~~~~ 229 (307)
T 2ifu_A 222 Y-SIPGFSG 229 (307)
T ss_dssp T-TSTTSTT
T ss_pred h-CCCCCCC
Confidence 9 9997653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=146.45 Aligned_cols=206 Identities=5% Similarity=-0.001 Sum_probs=177.6
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhch-------hHHHhcccCHHHHHHHHhchhccCCCC
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNR-------SAAFAKEGNYEKALEDAEKTISLKPDW 78 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (570)
.+.+....++..|.-+ ..+++.+|...|.+++..+|+.+.+|.++ +.++...++..+++..+++.+.+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~ 80 (282)
T 4f3v_A 2 HMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMST 80 (282)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGG
T ss_pred CchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3567788889999987 69999999999999999999999999999 899999999999999999999999987
Q ss_pred hhHHhH---------------------HHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCcccc
Q psy3014 79 PKGYSR---------------------KGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 79 ~~~~~~---------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
..+++. +|.++...|++++|.+.|..++...|++.
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~------------------------ 136 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL------------------------ 136 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH------------------------
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH------------------------
Confidence 666665 77899999999999999999888776433
Q ss_pred ccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCC
Q psy3014 138 NLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQP 217 (570)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (570)
T Consensus 137 -------------------------------------------------------------------------------- 136 (282)
T 4f3v_A 137 -------------------------------------------------------------------------------- 136 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhc
Q psy3014 218 PSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERK 295 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 295 (570)
..+.+|.+++..+++++|+..|+++....+.. ..+++.+|.++..+|
T Consensus 137 -------------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 137 -------------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 44557888889999999999999887653221 358999999999999
Q ss_pred CHHHHHHHHHHHhhcc--cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccC
Q psy3014 296 EYDQCIEQYIQKIENR--ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR 349 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 349 (570)
++++|+..|++++... |.. ...+++.+|.++..+|+.++|...|++++...|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~--~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEAC--ARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTT--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999998543 441 278999999999999999999999999999444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=129.89 Aligned_cols=119 Identities=35% Similarity=0.585 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
|..+..+..+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHh
Q psy3014 455 ILQGMQQQSKAIDAYEKALELD------ASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 493 (570)
++..+|++++|+.+|+++++++ |++..++..+..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=137.25 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=98.2
Q ss_pred HHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy3014 300 CIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379 (570)
Q Consensus 300 A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 379 (570)
+-..+++++.++|++ ..+++.+|.++...|++++|+..|++++. .+|.++.
T Consensus 21 ~~~~l~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~--------------------------~~P~~~~ 71 (151)
T 3gyz_A 21 SGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--------------------------YDFYNVD 71 (151)
T ss_dssp TSCCTGGGCCSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHH
T ss_pred CCCCHHHHhCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHH
Confidence 345566677778887 78888888888888888888888888888 7888888
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+|..+|.++...|++++|+.+|++++.++|+++.+|+++|.+|..+|++++|+..|++++.+.|+.+
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=169.82 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=158.7
Q ss_pred HccCHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 259 KKKNFEEALAHYNK----AVEFDPTDITFQNNIAAVYF------------ERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 259 ~~~~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
..+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|+. +.++.
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~---a~~~~ 151 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ---STIVK 151 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---HHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---HHHHH
Confidence 35578999999999 88898886 4555554432 5677888988888888888888 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...|++++|+..|++++...+...... .+......|....++.++|.++...|++++|+.+|+
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS-----------NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC-----------SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC-----------hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999443210000 000000122236888889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHhh
Q psy3014 403 EAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA-IDAYEKALEL 475 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~ 475 (570)
++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++| ...|++++..
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998999999999999988888 5567766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=155.14 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=100.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
.++..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCc
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
+..+|++++|+..|+++++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999998865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=151.77 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHH
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIG 325 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (570)
.+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++ ..+++.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q psy3014 326 NCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405 (570)
Q Consensus 326 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 405 (570)
.++...|++++|+..|++++. .+|+++..+........ ...++..+.....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~--------------------------l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 130 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS--------------------------LAKEQRLNFGDDIPSAL---RIAKKKRWNSIEE 130 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--------------------------HHHHTTCCCCSHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------------------------hCccchhhHHHHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999999999998 44443211111111111 1222333333444
Q ss_pred hcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhCC
Q psy3014 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM-QQQSKAIDAYEKALELDA 477 (570)
Q Consensus 406 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p 477 (570)
...|.++.+...++.+. .|++++|++.++++++.+|++......++.++... +.+++|...|.++.+..+
T Consensus 131 ~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 131 RRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 56777777777777654 78999999999999999998888888888777666 778889999998877543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=161.84 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=176.4
Q ss_pred HHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcccChhHHHHHHHHHHH
Q psy3014 258 YKKKN-FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKE----------YDQCIEQYIQKIENRADFKLIAKALQRIGN 326 (570)
Q Consensus 258 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~ 326 (570)
...|+ .++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++ ..+|...+.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---y~aW~hR~w 115 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---YGTWHHRCW 115 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Confidence 34444 4678999999999999999999999999999998 999999999999999999 999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC-CHHHHHHHHHH
Q psy3014 327 CYKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG-KYADAVKEYTE 403 (570)
Q Consensus 327 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~ 403 (570)
++...+ ++++++.++.++++ .+|.+..+|...+.+....| .++++++++.+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~--------------------------~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~ 169 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLE--------------------------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 169 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHT
T ss_pred HHHHcccccHHHHHHHHHHHHh--------------------------hccccccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 999999 77999999999999 89999999999999999999 89999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh--------------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH-----
Q psy3014 404 AINRNPDDPKYYSNRAACYTKL--------------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK----- 464 (570)
Q Consensus 404 al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~----- 464 (570)
+++.+|.+..+|+.++.++... +.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 170 ~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~ 249 (567)
T 1dce_A 170 LITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVH 249 (567)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred HHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeee
Confidence 9999999999999999999885 668999999999999999999999999999999998776
Q ss_pred -------HHHHHHHHHhhCCCc
Q psy3014 465 -------AIDAYEKALELDASN 479 (570)
Q Consensus 465 -------A~~~~~~al~~~p~~ 479 (570)
|+.+|.+++.++|..
T Consensus 250 ~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 250 VSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EETTTTEEEEEEEEEECTTBTT
T ss_pred eccCCceEEEEeccceeccccc
Confidence 667788888888763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-15 Score=136.97 Aligned_cols=186 Identities=10% Similarity=-0.056 Sum_probs=157.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 266 ALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA--DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 266 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
|+..+++.+...+.+...+..+|.++...|++++|++.+.+.+..+| ++ .+++..++.++..+|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~---lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT---TELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888888887666777788999999999999999999999998886 66 89999999999999999999999999
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCC--CHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP------VKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPD--DPK 413 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~ 413 (570)
+.+ .+| +.......-|++.+..| ++.+|...|+++.+..|+ .+.
T Consensus 162 ~~~--------------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~ 215 (310)
T 3mv2_B 162 YTN--------------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQL 215 (310)
T ss_dssp HHH--------------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHH
T ss_pred HHh--------------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHH
Confidence 887 566 23333444465566656 999999999999888886 344
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKL----------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
.+++ ++.++|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 216 lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 216 GLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 4444 899999999999999988776 58899999999999999998 99999999999999999876
Q ss_pred HH
Q psy3014 484 EG 485 (570)
Q Consensus 484 ~~ 485 (570)
..
T Consensus 291 d~ 292 (310)
T 3mv2_B 291 HH 292 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-17 Score=129.45 Aligned_cols=118 Identities=23% Similarity=0.364 Sum_probs=112.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
|.+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLD------PNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 125 (570)
++..+|++++|+..|+++++++ |++..++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999998888877643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-14 Score=146.81 Aligned_cols=408 Identities=9% Similarity=0.008 Sum_probs=272.6
Q ss_pred hhhHHhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCC--CCcchhhchhHHHhcccCH--------HHHHHHHhch
Q psy3014 5 QSLVYEVSLLKDKGNAALQANN---FIEAIEAYSEAIKLDG--TNHILFSNRSAAFAKEGNY--------EKALEDAEKT 71 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a 71 (570)
...|.....|..-+..-...|+ ++.+..+|++++...| .++..|..........++. +.....|++|
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA 173 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4456677888888888888899 9999999999999984 4666776665544444443 3344788887
Q ss_pred hc---c-CCCChhHHhHHHHHHh---------hccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhccCCCcccc
Q psy3014 72 IS---L-KPDWPKGYSRKGSALS---------YLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMNDMNRGDPFA 137 (570)
Q Consensus 72 l~---~-~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 137 (570)
+. . +|.....|........ ..++.+.+...|++++.+-..+. ..+......-.. .+...+...+.
T Consensus 174 l~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-~~~~~a~~~~~ 252 (679)
T 4e6h_A 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-VNQLTARRHIG 252 (679)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-HCTTTHHHHHH
T ss_pred HHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-cCcchHHHHHH
Confidence 75 3 6766677766665543 34567889999999997532322 233222222111 00000000000
Q ss_pred ccCCC----chHHH-------Hhhh-CCCC---------C--CCCCC---hHHHHHHHHHhhCchhHHhhccCccHHHHH
Q psy3014 138 NLFSD----PNIFV-------QLQL-DPRT---------K--PFLSD---PSYVQMIKEIQKDPSLMTTKLKDPRMMTTL 191 (570)
Q Consensus 138 ~~~~~----~~~~~-------~~~~-~~~~---------~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
..... ...+. .+.. .|.. . ..... ..+...+.--..++..........++...+
T Consensus 253 e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 00000 00000 0000 0000 0 00000 111122211122111000000000111112
Q ss_pred HHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHH-HHH
Q psy3014 192 SVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEAL-AHY 270 (570)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~ 270 (570)
. ..+...|..+..|+..+..+...|+.++|. ..|
T Consensus 333 e---------------------------------------------~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 333 M---------------------------------------------QAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp H---------------------------------------------HHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred H---------------------------------------------HHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2 222334567899999999999999999997 999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-----------cCh--------hHHHHHHHHHHHHHHHc
Q psy3014 271 NKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-----------ADF--------KLIAKALQRIGNCYKKM 331 (570)
Q Consensus 271 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------~~~--------~~~~~~~~~l~~~~~~~ 331 (570)
++++...|.+...|..++.+....|++++|..+|++++... |.+ .....+|...+.+..+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999752 321 11356788888888889
Q ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC
Q psy3014 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI-DPVKAEEAKERGNELFKNG-KYADAVKEYTEAINRNP 409 (570)
Q Consensus 332 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 409 (570)
|..+.|...|.++++ . .+....+|...+.+....+ +++.|..+|+.+++..|
T Consensus 448 ~~l~~AR~vf~~A~~--------------------------~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 448 QGLAASRKIFGKCRR--------------------------LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HCHHHHHHHHHHHHH--------------------------TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--------------------------hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 999999999999987 3 3334566777777777765 49999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK---FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 410 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+++..|...+......|+.+.|...|++++...|+ ....|......-...|+.+.+...++++.+..|+++.+..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 99999999999999999999999999999999883 5677888888889999999999999999999999865543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-16 Score=123.65 Aligned_cols=135 Identities=30% Similarity=0.559 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
.++..+|.++...|++++|+..+++++. ..|.++..+..+|.++...|++++|+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~ 55 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAI 55 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH--------------------------cCCcchhHHHHHHHHHHHhcCHHHHH
Confidence 4678899999999999999999999998 77888899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|..+|++++..+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 56 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy3014 479 N 479 (570)
Q Consensus 479 ~ 479 (570)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=124.00 Aligned_cols=114 Identities=24% Similarity=0.365 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LK 447 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 447 (570)
++.+.++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999998765 35
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++.++|.++..+|++++|+++|+++++..|+ ++....+..+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 7889999999999999999999999999986 5555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=129.98 Aligned_cols=122 Identities=28% Similarity=0.479 Sum_probs=113.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
..+..+..++.+|.+++..|++++|+.+|+++++.+|+++.+++++|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHhc
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAV--EGYRQCSIAVS 494 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~ 494 (570)
|.++..+|++++|+.+|+++++++|++..++ ..+..+..+++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998854 45555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=131.98 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-------Ccc-----hhhchhHHHhcccCHHHHHHHHhchhcc-
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGT-------NHI-----LFSNRSAAFAKEGNYEKALEDAEKTISL- 74 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~- 74 (570)
...+..++.+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999 333 9999999999999999999999999999
Q ss_pred ------CCCChhHH----hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 75 ------KPDWPKGY----SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 75 ------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+..
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999988766555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-17 Score=128.40 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHhcChHHHHHHHHHHHhc---
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPD-------DPK-----YYSNRAACYTKLAAFDLGLKDCETCLKL--- 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--- 441 (570)
.+..+...|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 442 ----DPKFLKGW----IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 442 ----~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999888877777766554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=128.98 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred HHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q psy3014 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEA 381 (570)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 381 (570)
..+++++..+|++ ..+++.+|.++...|++++|+..|++++. .+|.++.+|
T Consensus 8 ~~~~~al~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~ 58 (148)
T 2vgx_A 8 GTIAMLNEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCV--------------------------LDHYDSRFF 58 (148)
T ss_dssp CSHHHHTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHH
T ss_pred hhHHHHHcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------cCcccHHHH
Confidence 4567777777777 77788888888888888888888888877 777788888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG 448 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 448 (570)
+.+|.++...|++++|+.+|++++.++|+++.+++++|.++...|++++|+..|+++++++|+++..
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888888888888888888888888888888888888888888888888888888888887776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=128.93 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=111.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|.++..++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.+|.++..+|++++|+..|+++++++|+++........+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 9999999999999999999999999998876655444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-16 Score=122.82 Aligned_cols=123 Identities=53% Similarity=0.948 Sum_probs=119.0
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
..|..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|.++...|++++|+.+|+++++.+|++..++..++.++..+|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-15 Score=128.51 Aligned_cols=173 Identities=9% Similarity=-0.032 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHhhcccChhHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK----EYDQCIEQYIQKIENRADFKLIAKA 320 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~l~~~~~~~~~~~~ 320 (570)
.++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+..|+++.+ +.+ +.+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~---~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS---KSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC---HHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC---HHH
Confidence 57899999999999999999999999999875 689999999999998 7 99999999999965 456 889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHH----
Q psy3014 321 LQRIGNCYKK----MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFK---- 390 (570)
Q Consensus 321 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~---- 390 (570)
++.+|.+|.. .+++++|+.+|+++.. ..| ..+.+++.+|.+|..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~--------------------------~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAAR--------------------------DSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTS--------------------------STTSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHH--------------------------cCCCcchHHHHHHHHHHHHcCCCC
Confidence 9999999998 8999999999999998 666 468999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-c-----ChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL-A-----AFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
.+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++++... ..+...++.
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~~ 208 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFDR 208 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 89999999999999998 77888999999999875 3 89999999999998753 444544443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=120.05 Aligned_cols=124 Identities=33% Similarity=0.557 Sum_probs=120.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+|..+..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
|.++...|++++|+.+|+++++++|++..++..++.++..+|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998863
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-15 Score=130.65 Aligned_cols=137 Identities=19% Similarity=0.157 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...++.+|.++...|++++|+..|++++. . ++.++..+|.++...|++++|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--------------------------~---~~~~~~~lg~~~~~~g~~~~A 56 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD--------------------------P---HSRICFNIGCMYTILKNMTEA 56 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--------------------------C---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--------------------------C---ChHHHHHHHHHHHHcCCHHHH
Confidence 45678899999999999999999998864 2 467899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhCCC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL----------------KGWIRKGKILQGMQQ 461 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~g~ 461 (570)
+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|.+. .+++.+|.++..+|+
T Consensus 57 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 57 EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999888766 999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHH
Q psy3014 462 QSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 462 ~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+++|+.+|+++++++|++....
T Consensus 137 ~~~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp HHHHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHHHHcCcccccch
Confidence 9999999999999999875433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=119.45 Aligned_cols=117 Identities=46% Similarity=0.756 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh----hHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF----KLIA 318 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~ 318 (570)
.++.+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ ...+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 357888999999999999999999999999999999999999999999999999999999999999988765 2456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
.++..+|.++...|++++|+.+|++++...++++....+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~ 124 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHH
Confidence 78999999999999999999999999997777665544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=136.43 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=116.6
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP----------------KYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
..+..+..+..+|..++..|++++|+..|.+++...|.++ .++.++|.++...|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4566778899999999999999999999999999998887 899999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988863
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=127.21 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINR------------------NPDDPKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
..+..+...|..++..|+|++|+..|.+++.. +|.++.++.++|.++..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45778899999999999999999999999998 667778999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhcC
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-EAVEGYRQCSIAVSS 495 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 495 (570)
++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...+..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 778888888877654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=130.39 Aligned_cols=132 Identities=12% Similarity=0.197 Sum_probs=117.0
Q ss_pred HcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
..|++++|+..+++++. .+|.++.++..+|.++...|++++|+.+|+++++.+|
T Consensus 22 ~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--------------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp -----CCCCHHHHHHHH--------------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44566666666666666 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhcCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 410 DDPKYYSNRAAC-YTKLAAF--DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 410 ~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
+++.++..+|.+ +...|++ ++|+..+++++..+|+++.+++.+|.++...|++++|+.+|+++++++|++......+
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999 8899999 9999999999999999999999999999999999999999999999999987655443
Q ss_pred H
Q psy3014 487 R 487 (570)
Q Consensus 487 ~ 487 (570)
.
T Consensus 156 ~ 156 (177)
T 2e2e_A 156 E 156 (177)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-15 Score=118.28 Aligned_cols=132 Identities=33% Similarity=0.616 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|++ ..++..+|.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555554 44455555555
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|++++|+..+++++. ..|..+.++..+|.++...|++++|...+.+++..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALE--------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 555555555555555544 344444444445555555555555555555544444
Q ss_pred C
Q psy3014 409 P 409 (570)
Q Consensus 409 p 409 (570)
|
T Consensus 134 ~ 134 (136)
T 2fo7_A 134 P 134 (136)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=151.45 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Q psy3014 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED----------WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIK 365 (570)
Q Consensus 296 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 365 (570)
..++|+..+.+++..+|++ ..+|...+.++...|+ +++++..+++++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~---~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------- 101 (567)
T 1dce_A 44 LDESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------- 101 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred CCHHHHHHHHHHHHHCchh---HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-------------------
Confidence 3468899999999999999 9999999999999888 7888888888877
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcC
Q psy3014 366 EEEKKAYIDPVKAEEAKERGNELFKNG--KYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA-AFDLGLKDCETCLKLD 442 (570)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~ 442 (570)
.+|.+..+|...+.++...+ ++++++.++.++++.+|.+..+|..++.+....| .+++++++++++++.+
T Consensus 102 -------~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 102 -------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp -------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred -------hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 89999999999999999999 7799999999999999999999999999999999 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 443 PKFLKGWIRKGKILQGM--------------QQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|++..+|..+|.++..+ +.+++|++++.+|+.++|++..+|..++.++...++
T Consensus 175 p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 99999999999999874 568999999999999999999999999999998877
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=135.71 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=141.5
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK---LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 355 (570)
.....+...+..+...|++++|++.+.++++..+... .....++.+|.++...|++++|+.++++++...+...
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--- 149 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS---
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC---
Confidence 3445556677778888888888888888887655432 2235567788999999999999999999987433210
Q ss_pred HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHhcCh
Q psy3014 356 LISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI---NRNPDDP----KYYSNRAACYTKLAAF 428 (570)
Q Consensus 356 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~ 428 (570)
.......++..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++
T Consensus 150 -----------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 150 -----------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 112236689999999999999999999999999 4566543 6899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCCCHHHH-HHHHHHHHhhC
Q psy3014 429 DLGLKDCETCLKLDPK------FLKGWIRKGKILQGMQQQSKA-IDAYEKALELD 476 (570)
Q Consensus 429 ~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 476 (570)
++|+.++++++.+.++ ...+++++|.++..+|++++| ..+|++++.+.
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999987543 267899999999999999999 88899998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=122.09 Aligned_cols=123 Identities=32% Similarity=0.472 Sum_probs=115.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
.+|..+..+..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHhcC
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDAS-----NAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~ 495 (570)
|.++..+|++++|+.+|+++++++|+ +..+...+..+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 88888888888766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=135.88 Aligned_cols=177 Identities=10% Similarity=0.060 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHH--HHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT--LISEM 360 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~ 360 (570)
.....+.+....|+++++.+.+.......+.. ...+..+|..+...|++++|+..|.+++...+...... .....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQS---AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 33444555556666666666665554444444 66777777777777777777777777776332100000 00000
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
...-...++..+|.++...|++++|+.++++++..+|+++.+++.+|.++...|++++|+..|++++.
T Consensus 83 ------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 83 ------------KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 00001378999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAI-DAYEKALE 474 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~ 474 (570)
++|++..++..++.++..+|+..++. ..|.+.+.
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888877 44444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=129.95 Aligned_cols=120 Identities=32% Similarity=0.508 Sum_probs=110.7
Q ss_pred hhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHH
Q psy3014 6 SLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRK 85 (570)
Q Consensus 6 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (570)
..+.++..++.+|.+++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHH--HHHHHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMK--EAIKDVRNQ 125 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~ 125 (570)
|.++..+|++++|+..|+++++++|++..++ ..+..+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998744 444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=133.74 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh---h
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT------FQNNIAAVYFERKEYDQCIEQYIQKIENRADF---K 315 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---~ 315 (570)
.....+...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+..+++++...+.. .
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 44555566788899999999999999999998887765 33458889998999999999999999864332 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHH
Q psy3014 316 LIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYA 395 (570)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (570)
....++..+|.+|...|++++|+.+|++++... +......+....+++++|.++...|+++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------EALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence 335689999999999999999999999998521 1100134456678888999999999999
Q ss_pred HHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcC-hHHHHHHHHHHHhc
Q psy3014 396 DAVKEYTEAINRNPDD------PKYYSNRAACYTKLAA-FDLGLKDCETCLKL 441 (570)
Q Consensus 396 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~-~~~A~~~~~~al~~ 441 (570)
+|+.++++++++.+.. +.+++++|.++..+|+ +++|+.+|++++.+
T Consensus 214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999888775432 6788888888888884 58888888888765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=129.07 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC-----hhHHHHH
Q psy3014 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDP--TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD-----FKLIAKA 320 (570)
Q Consensus 248 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~ 320 (570)
..+..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ + ...+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d--~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN--EMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch--HHHH
Confidence 3346789999999999999999999999997 88999999999999999999999999999998883 2 1333
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHCCCHHH
Q psy3014 321 LQRIGNCYKKME--DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 321 ~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 396 (570)
...-+++....| ++.+|...|+++.. ..|+ .+..+++ ++..+|++++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~--------------------------~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQ--------------------------TFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHT--------------------------TSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHH--------------------------hCCCcccHHHHHH---HHHHcCCHHH
Confidence 333355566666 99999999999887 5554 2333333 8999999999
Q ss_pred HHHHHHHHHhc----------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 397 AVKEYTEAINR----------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 397 A~~~~~~al~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
|...++.+++. +|+++.++.+++.+...+|+ +|.++++++...+|+++.+.
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 99999988776 48899999999999999998 89999999999999998765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-16 Score=128.15 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=112.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------------------CCCCcchhhchhHHHhcccCHHHHHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKL------------------DGTNHILFSNRSAAFAKEGNYEKALEDA 68 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~ 68 (570)
....+..+..+|..++..|+|++|+..|++++.. +|.++.++.++|.|+..+|++++|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3457899999999999999999999999999999 7777789999999999999999999999
Q ss_pred hchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhh
Q psy3014 69 EKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDVRNQEMN 128 (570)
Q Consensus 69 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 128 (570)
++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++. .+...+..+......
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 667777777766433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.3e-17 Score=157.24 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=159.3
Q ss_pred CHHHHHHHHHH----HHccCCCCcchhhchhHHH------------hcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 26 NFIEAIEAYSE----AIKLDGTNHILFSNRSAAF------------AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 26 ~~~~A~~~~~~----al~~~p~~~~~~~~la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.++.|+..+++ ++.++|.. +|...|... ..++++++|+..+++++...|+...++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 56777777777 77788864 455555332 3677889999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
...|++++|+..|+++++++|.+.......
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~-------------------------------------------------- 308 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKE-------------------------------------------------- 308 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHH--------------------------------------------------
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHH--------------------------------------------------
Confidence 999999999999999999988763210000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
.....+....+
T Consensus 309 ---------------------------------------------------------------------~~~~~~~~~~~ 319 (457)
T 1kt0_A 309 ---------------------------------------------------------------------SKASESFLLAA 319 (457)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 00012245678
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
++++|.++...|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++ ..++..++.++.
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~ 396 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HcCCHHHHHHH-HHHHhc
Q psy3014 330 KMEDWKNAKVY-FEKSMS 346 (570)
Q Consensus 330 ~~~~~~~A~~~-~~~~~~ 346 (570)
..++++++... +.+++.
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99999888754 454443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=113.80 Aligned_cols=115 Identities=31% Similarity=0.516 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
.+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
...|++++|+.+|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=118.42 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 459 MQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
.|++++|+..|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=114.05 Aligned_cols=121 Identities=30% Similarity=0.501 Sum_probs=113.9
Q ss_pred Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 374 DPVK-AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 374 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
+|.. +..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 453 GKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
|.++...|++++|+.+|+++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999987764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-14 Score=130.84 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI------TFQNNIAAVYFERKEYDQCIEQYIQKIENRADF-- 314 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-- 314 (570)
.+.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 456667778899999999999999999999999988764 345678899999999999999999999764322
Q ss_pred -hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCC
Q psy3014 315 -KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNG 392 (570)
Q Consensus 315 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 392 (570)
.....++..+|.+|...|++++|+.+|++++.... . ...++. ...++.++|.++...|
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-------------------~-~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-------------------A-LHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------H-SCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------h-cCccccchHHHHHhHHHHHHHHh
Confidence 23467899999999999999999999999985211 0 001122 2368999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcChHHH-HHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINRNPD------DPKYYSNRAACYTKLAAFDLG-LKDCETCLKL 441 (570)
Q Consensus 393 ~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 441 (570)
++++|+.++++++...+. .+.+++++|.+|..+|++++| ..++++++.+
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999987532 277899999999999999999 7889999865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=121.54 Aligned_cols=132 Identities=24% Similarity=0.315 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++|
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A 66 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTECYGYA 66 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCChHHHHHHHHHHHHcCCHHHH
Confidence 55566666666666666666666666666 5566666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhh
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG--KILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~ 475 (570)
+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..++..++ ..+...|++++|+..+.++..+
T Consensus 67 ~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 67 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 66666666666666666666666666666666666666666666666666553333 3355666666666666655443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-16 Score=120.80 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
....++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQ 114 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (570)
...|++++|+..|+++++.+|++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999998653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=126.29 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..+++++..+|++ ..++..+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l 77 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHH
Confidence 345556666666666666666666666663 22 55666666666666666666666666666666666 5666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
|.++...|++++|+..|++++.
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 6666666666666666666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-16 Score=152.24 Aligned_cols=127 Identities=28% Similarity=0.407 Sum_probs=118.1
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcChHHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------------PKYYSNRAACYTKLAAFDLGLKDCET 437 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~ 437 (570)
..|..+..+..+|..++..|+|++|+..|+++++..|.+ ..+|+++|.+|..+|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 678889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 438 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=132.57 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy3014 284 QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLI---AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360 (570)
Q Consensus 284 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 360 (570)
+...+..+...|++++|+..++++++..+..+.. ...+..+|.++...+++++|+.+|++++.......
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-------- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-------- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------
Confidence 3445778899999999999999999876655321 33455689999999999999999999998432210
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C----CCCHHHHHHHHHHHHHhcChHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---N----PDDPKYYSNRAACYTKLAAFDLGLK 433 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~A~~ 433 (570)
.......++..+|.++...|++++|+.+|+++++. . +....+++++|.+|..+|++++|+.
T Consensus 150 ------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 150 ------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11123557899999999999999999999999953 1 2235589999999999999999999
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC
Q psy3014 434 DCETCLKLDPKF------LKGWIRKGKILQGMQ-QQSKAIDAYEKALELD 476 (570)
Q Consensus 434 ~~~~al~~~p~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 476 (570)
++++++.+.+.. +.+++.+|.++..+| .+++|+.+|++|+.+.
T Consensus 218 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999875433 789999999999999 5799999999999764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-15 Score=124.11 Aligned_cols=128 Identities=14% Similarity=0.277 Sum_probs=110.7
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH-HHHcCCH--H
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC-YKKMEDW--K 335 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 335 (570)
..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++ ..++..+|.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchH
Confidence 57889999999999999999999999999999999999999999999999999998 8889999998 7788888 8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 336 NAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 336 ~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
+|+..+++++. .+|.++.++..+|.++...|++++|+..|+++++.+|+++...
T Consensus 99 ~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALA--------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999988888 7888888888889999999999999999999988888875443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=118.14 Aligned_cols=133 Identities=18% Similarity=0.350 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQR 323 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 323 (570)
...+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++ ..++..
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~ 86 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHH
Confidence 35677777778888888888888888888887777777777777777777777777777777777777766 666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHH--HHHHHHHCCCHHHHHHHH
Q psy3014 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE--RGNELFKNGKYADAVKEY 401 (570)
Q Consensus 324 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~ 401 (570)
+|.++...|++++|+..|++++. .+|.+..++.. ++..+...|++++|+..+
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVK--------------------------VKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66666666666666666666666 45555444432 333355556666666655
Q ss_pred HHHH
Q psy3014 402 TEAI 405 (570)
Q Consensus 402 ~~al 405 (570)
.++.
T Consensus 141 ~~~~ 144 (166)
T 1a17_A 141 EHKR 144 (166)
T ss_dssp HHHH
T ss_pred cchH
Confidence 5543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=118.15 Aligned_cols=120 Identities=26% Similarity=0.395 Sum_probs=114.3
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..|.....++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457789999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
+.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988887644
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-15 Score=114.00 Aligned_cols=114 Identities=57% Similarity=0.926 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
...|++++|+..|+++++.+|++..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999988887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=114.77 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHH
Q psy3014 317 IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396 (570)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (570)
....+..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------------~~~~~~~~~~~la~~~~~~~~~~~ 68 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--------------------------RNPKDAKLYSNRAACYTKLLEFQL 68 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHTTTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------cCCCcHHHHHHHHHHHHHhccHHH
Confidence 388999999999999999999999999999 888899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Q psy3014 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461 (570)
Q Consensus 397 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 461 (570)
|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..++.++..+|+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=134.50 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHh
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALS 90 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 90 (570)
|...+..|..+...|+|++|++.|.++++..|+........+......+..++| +..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a-----------------l~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETS-----------------ILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHH-----------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHH-----------------HHHHHHHHH
Confidence 345678899999999999999999999999999888777776666555554444 467899999
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
..|++++|+..+.+++...+......
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~------------------------------------------------------ 92 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSK------------------------------------------------------ 92 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHH------------------------------------------------------
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchH------------------------------------------------------
Confidence 99999999999999987655432211
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
....+.
T Consensus 93 --------------------------------------------------------------------------~~~~~~ 98 (434)
T 4b4t_Q 93 --------------------------------------------------------------------------TVKVLK 98 (434)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122334
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc---ccChhHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDP------TDITFQNNIAAVYFERKEYDQCIEQYIQKIEN---RADFKLIAKAL 321 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~ 321 (570)
..+|.++...|++++|+.++++++...+ ....++..+|.++...|+|++|+..+++++.. ..+.+....++
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 4567777788999999999999987632 33678899999999999999999999998854 22334558899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 322 QRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP--VKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
..+|.+|...|++++|...+++++...+. + .+| .....+..+|.++...|+|.+|..
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------------~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANS--------------------I-YCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------S-CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhc--------------------C-CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999863211 0 122 235677888999999999999999
Q ss_pred HHHHHHhcCC-----CCHH-H--HHHHHHHHHHhcChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhC--CCHHHH
Q psy3014 400 EYTEAINRNP-----DDPK-Y--YSNRAACYTKLAAFDLGLKDCETCLKLDP----KFLKGWIRKGKILQGM--QQQSKA 465 (570)
Q Consensus 400 ~~~~al~~~p-----~~~~-~--~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~--g~~~~A 465 (570)
+|.+++...+ .... . ......++....................+ .....+..++..+... ..+..+
T Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 317 (434)
T 4b4t_Q 238 YFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTA 317 (434)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHH
Confidence 9999987521 2211 1 11222233333333333332222221111 1233455555555432 355666
Q ss_pred HHHHHHHHhhCCC
Q psy3014 466 IDAYEKALELDAS 478 (570)
Q Consensus 466 ~~~~~~al~~~p~ 478 (570)
...+...+..+|.
T Consensus 318 ~~~~~~~~~~~~~ 330 (434)
T 4b4t_Q 318 LKQYEKELMGDEL 330 (434)
T ss_dssp HHHTHHHHTCSHH
T ss_pred HHHHHHHHcccHH
Confidence 6666666555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=114.35 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
...+..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~~~~~~~~~A 65 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--------------------------LNPANAVYFCNRAAAYSKLGNYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHhhchHHH
Confidence 66777777777777777777777777777 5666777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCH
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 462 (570)
+.++.+++...|+++.+++.+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777777788887888888888888888777777777777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=120.04 Aligned_cols=119 Identities=20% Similarity=0.310 Sum_probs=110.7
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKG 86 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 86 (570)
.+.++..++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHH
Q psy3014 87 SALSYLGRYKESISTYEEGLKLDPN-----NEQMKEAIKDVRNQ 125 (570)
Q Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 125 (570)
.++...|++++|+..|+++++++|+ +..+...+..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 66777666666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=112.57 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDP---KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKG 453 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~ 453 (570)
.++.+|.+++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467899999999999999999999999999988 899999999999999999999999999999999 88999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 454 KILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.++..+|++++|+..|+++++.+|+++.+......+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988877776655443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-14 Score=112.27 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=112.5
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC-------HH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF-------LK 447 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 447 (570)
|..+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.++++++...|++ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 448 GWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
+++.+|.++...|++++|+.+|+++++..| ++.++..++.+...+++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68999999998887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-11 Score=120.65 Aligned_cols=372 Identities=11% Similarity=-0.028 Sum_probs=240.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC-HHHHHHHHhchhcc---CCCChhHHh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN-YEKALEDAEKTISL---KPDWPKGYS 83 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~ 83 (570)
...+...+..+...+-.|+++.+..+|++++...| +...|........+.+. .+.....|+.++.. +|.+...|.
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 45678888899888888999999999999999888 67788777766666553 35566777887764 777888888
Q ss_pred HHHHHHh----hccCHHHHHHHHHHhhccCCCcHHH-HHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCC
Q psy3014 84 RKGSALS----YLGRYKESISTYEEGLKLDPNNEQM-KEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF 158 (570)
Q Consensus 84 ~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (570)
.....+. ..|+.+.+...|++++..-+.+..- |......-.. .+..
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~---------------------------- 140 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKI---------------------------- 140 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHH----------------------------
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccc----------------------------
Confidence 8887765 3577889999999999963333322 2211111111 0000
Q ss_pred CCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy3014 159 LSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDK 238 (570)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (570)
.....+.... +... ...............
T Consensus 141 ----~~~~~~~~~~--~~y~----~ar~~y~~~~~~~~~----------------------------------------- 169 (493)
T 2uy1_A 141 ----TGKKIVGDTL--PIFQ----SSFQRYQQIQPLIRG----------------------------------------- 169 (493)
T ss_dssp ----HHHHHHHHHH--HHHH----HHHHHHHHHHHHHHT-----------------------------------------
T ss_pred ----cHHHHHHHHh--HHHH----HHHHHHHHHHHHHhh-----------------------------------------
Confidence 0000000000 0000 000000000000000
Q ss_pred ccchhHHHHHHHHHHHHHHHHc--cC-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKK--KN-----FEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~--~~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 311 (570)
.....|......-... |- .+.....|++++...|..+.+|...+..+...|+.++|...|++++..
T Consensus 170 ------~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 170 ------WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp ------CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ------ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 0012344333332221 11 455778999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC
Q psy3014 312 ADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN 391 (570)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (570)
|.+ ...+...+... ..+ +. ++++........ .+. ......+....+|...+....+.
T Consensus 243 P~~---~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~-------~~~------~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 243 SDG---MFLSLYYGLVM-DEE---AV---YGDLKRKYSMGE-------AES------AEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp CCS---SHHHHHHHHHT-TCT---HH---HHHHHHHTC-----------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCc---HHHHHHHHhhc-chh---HH---HHHHHHHHHhhc-------cch------hhhhcccccHHHHHHHHHHHHHc
Confidence 887 44444333321 111 11 222211100000 000 00001233456788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy3014 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA-AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (570)
+..+.|...|.++ ...+....+|...|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+
T Consensus 300 ~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999 443346677877788777777 59999999999999999999888888888899999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 471 KALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 471 ~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
++ +....+|..+.......|+
T Consensus 379 r~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 379 RL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HS----CCBHHHHHHHHHHHHHHSC
T ss_pred HH----HHHHHHHHHHHHHHHHCCC
Confidence 98 4678999999999888887
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=115.50 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 391 NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF----------DLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 391 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 35567777777777777777777777777777777654 47888888888888888888888888887764
Q ss_pred -----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy3014 461 -----------QQSKAIDAYEKALELDASNAEAVEGYRQC 489 (570)
Q Consensus 461 -----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 489 (570)
++++|+.+|++|++++|++...+..+..+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88999999999999999887776655543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=110.33 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=103.1
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC--CHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK--FLKGWIR 451 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 451 (570)
+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++..+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhC-CCHHHHHHHHHHHHhhCCCcH
Q psy3014 452 KGKILQGM-QQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 452 l~~~~~~~-g~~~~A~~~~~~al~~~p~~~ 480 (570)
+|.++... |++++|++++++++...|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999864
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=113.90 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---chhhchhHHHhcccCHHHHHHHHhchhccCCCC---hhHHhHH
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW---PKGYSRK 85 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 85 (570)
+.++.+|..++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999998 799999999999999999999999999999999 8889999
Q ss_pred HHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 86 GSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 86 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
|.++..+|++++|+..|+++++.+|++..+......+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999887776666544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-15 Score=139.06 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=98.3
Q ss_pred hhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-----------------chhhchhHHHhcccCHHHHHHH
Q psy3014 5 QSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH-----------------ILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~ 67 (570)
...+..+..++.+|..++..|+|++|+..|++++...|++. .+++++|.++..+|++++|+..
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44567889999999999999999999999999999999876 3899999999999999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 122 (570)
|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777655544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=116.40 Aligned_cols=118 Identities=29% Similarity=0.463 Sum_probs=112.2
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
.+..+..++.+|..++..|+|++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35678999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q psy3014 84 RKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRN 124 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 124 (570)
.+|.++...|++++|+..|+++++++|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=119.65 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=107.0
Q ss_pred HHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Q psy3014 292 FERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKA 371 (570)
Q Consensus 292 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 371 (570)
+..|++++|...++......+.. ..++..+|.++...|++++|+..+++++......
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------- 59 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATA---SGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-------------------- 59 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------
T ss_pred cccccHHHHHHHHHHhcCChHHH---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------------------
Confidence 34566666666443333311122 6666777777777777777777777766522110
Q ss_pred cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC
Q psy3014 372 YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR---NPDD----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 444 (570)
...+....++..+|.++...|++++|+.++++++.. .+++ ..++.++|.++...|++++|+..+++++.+.+.
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 023445667777777777777777777777777776 3322 456778888888888888888888888765321
Q ss_pred --C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 445 --F----LKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 445 --~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
+ ..++..+|.++...|++++|+.++++++++..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 23467889999999999999999999888754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-13 Score=105.42 Aligned_cols=116 Identities=28% Similarity=0.505 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~la~~~~~~~~~~~A 62 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--------------------------LDPNNAEAWYNLGNAYYKQGDYDEA 62 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------HCcCcHHHHHHHHHHHHHhCCHHHH
Confidence 34455555555555555555555555555 4444555555555555555555555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+..+++++...|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 55555555555555555555666666666666666666666655565555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=117.46 Aligned_cols=166 Identities=14% Similarity=0.154 Sum_probs=132.2
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
+..|++++|.+.++......+....++..+|.++...|++++|+..+++++.... +.+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4689999999966655554446788999999999999999999999999997422 3334488999999999999999
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CC
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDP-VKAEEAKERGNELFKNGKYADAVKEYTEAINRNP--DD 411 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~ 411 (570)
++|+.++++++..... ...++ ....++..+|.++...|++++|+.++++++...+ .+
T Consensus 83 ~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 83 DAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999873110 00133 4577899999999999999999999999997632 22
Q ss_pred ----HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 412 ----PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 412 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
..++..+|.++...|++++|+..+++++.+..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 33578999999999999999999999997643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-13 Score=130.44 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDI-----------------TFQNNIAAVYFERKEYDQCIEQYIQKIE 309 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~ 309 (570)
|.+....|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788999999999999999999999988652 4688999999999999999999999987
Q ss_pred cccCh---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 310 NRADF---KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 310 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
..+.. .....+...+|.++...|++++|+.++++++...+ .....+....++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------REKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------HSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------HhCccHHHHHHHHHHHH
Confidence 65543 22345667788999999999999999999886221 11134556788999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC---CC----HHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINR------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP---KF----LKGWIRKG 453 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~l~ 453 (570)
++...|+|++|..++++++.. .+....++..+|.+|...|++++|...+++++...+ .. ...+..+|
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 999999999999999999875 233467899999999999999999999999987632 22 34567789
Q ss_pred HHHHhCCCHHHHHHHHHHHHhhC
Q psy3014 454 KILQGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~al~~~ 476 (570)
.++...|++.+|..+|.++++..
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=130.34 Aligned_cols=123 Identities=22% Similarity=0.386 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAIN----------------RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+..+..+|..++..|++++|+..|+++++ .+|.++.++.++|.++..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456788999999999999999999999998 7778889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHH
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~ 499 (570)
++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=109.76 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY----------ADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.+++.+++|+..+++++..+|.++++|.++|.++...+++ ++|+..|+++++++|+++.+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666666669999999999999999998876 599999999999999999999999999998
Q ss_pred hc-----------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 425 LA-----------AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 425 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+| ++++|+.+|++|++++|++. .|.+++++.|..++.+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~---------------------~y~~al~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT---------------------HYLKSLEMTAKAPQLHAEAY 145 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------------HHHHHHHHHHTHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH---------------------HHHHHHHHHHhCHhccCccc
Confidence 85 89999999999999999874 55666677777777666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=132.84 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|..+...|++++|+..|++++...+........+...++...+ ...++.++|.++...|++++|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l---------~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---------KNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH---------HTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH---------HHHHHHHHHHHHHHcCCHHHH
Confidence 67788889999999999999999999988665543333333333333222 123778888888888888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhhC
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL-QGMQQQSKAIDAYEKALELD 476 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~ 476 (570)
+.+|+++++.+|+++.+++++|.+|..+|++++|+..|++++.++|++..++..++.+. ...+..+++...|.+++...
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888888888888888884 45567788888888888888
Q ss_pred CCcHH
Q psy3014 477 ASNAE 481 (570)
Q Consensus 477 p~~~~ 481 (570)
|+++.
T Consensus 330 p~~~~ 334 (338)
T 2if4_A 330 DEGGA 334 (338)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=110.25 Aligned_cols=116 Identities=26% Similarity=0.397 Sum_probs=108.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC-------hhH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW-------PKG 81 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 81 (570)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999999887 889
Q ss_pred HhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 82 YSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 82 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++.+|.++...|++++|+..|+++++..| +......++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 57777777777655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=109.93 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=79.6
Q ss_pred HCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHH
Q psy3014 390 KNGKYADAVKEYTEAINR---NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAI 466 (570)
Q Consensus 390 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (570)
..|++++|+.+|+++++. +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888888888 57777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 467 DAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 467 ~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
..|+++++..|+++.+......+..
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888888877654444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=143.04 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
+..+..+|.++...|++++|+..|+++++ .+|.++.++..+|.++...|++++|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A 59 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIE--------------------------LNPSNAIYYGNRSLAYLRTECYGYA 59 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------------------hCCccHHHHHHHHHHHHHhcCHHHH
Confidence 55677788889999999999999999998 8899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH-----
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKI--LQGMQQQSKAIDAYE----- 470 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~----- 470 (570)
+..++++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+ +..+|++++|++.++
T Consensus 60 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 60 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ------HHHhhCCCcH
Q psy3014 471 ------KALELDASNA 480 (570)
Q Consensus 471 ------~al~~~p~~~ 480 (570)
++++++|+..
T Consensus 140 ~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 140 VDSLDIESMTIEDEYS 155 (477)
T ss_dssp TTCCTTSSCCCCTTCC
T ss_pred Hhhhhhhhcccccccc
Confidence 8888887653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-14 Score=109.35 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=101.0
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCC--ChhHHhHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD--WPKGYSRK 85 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 85 (570)
|.++..++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+ +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhc-cCHHHHHHHHHHhhccCCCcH
Q psy3014 86 GSALSYL-GRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 86 a~~~~~~-g~~~~A~~~~~~al~~~p~~~ 113 (570)
|.++... |++++|+..+++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=129.75 Aligned_cols=123 Identities=16% Similarity=0.330 Sum_probs=115.8
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----------------cCCCCcchhhchhHHHhcccCHHHHHHH
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIK----------------LDGTNHILFSNRSAAFAKEGNYEKALED 67 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~ 67 (570)
.......+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 445566788999999999999999999999999998 7888899999999999999999999999
Q ss_pred HhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q psy3014 68 AEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE 126 (570)
Q Consensus 68 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 126 (570)
++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-14 Score=139.82 Aligned_cols=138 Identities=17% Similarity=0.340 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRI 324 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l 324 (570)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|++ ..++..+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 80 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRR 80 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHH
Confidence 5566677788999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHH--HHHCCCHHHHHHHHH
Q psy3014 325 GNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNE--LFKNGKYADAVKEYT 402 (570)
Q Consensus 325 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~ 402 (570)
|.+|..+|++++|+..|+++++ .+|.+..++..++.+ +...|++++|+..++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVK--------------------------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999 788888888888888 889999999999999
Q ss_pred -----------HHHhcCCCC
Q psy3014 403 -----------EAINRNPDD 411 (570)
Q Consensus 403 -----------~al~~~p~~ 411 (570)
+++...|+.
T Consensus 135 ~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 135 HKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp -CCSTTTCCTTSSCCCCTTC
T ss_pred ccchhHhhhhhhhccccccc
Confidence 777776653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=104.59 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI---DPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
.|++++|+..|++++. . +|.++.++..+|.++...|++++|+.+|+++++.
T Consensus 3 ~g~~~~A~~~~~~al~--------------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA--------------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHHS--------------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566666666666666 7 6999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 408 NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
+|+++.+++.+|.++...|++++|+..+++++...|+++.......
T Consensus 57 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 57 FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999987654333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=108.08 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+|.++...|++++|+.++++++...+.. ...+....++..+|.++...|++++|
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~g~~~~A 68 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------------------GDKAAERIAYSNLGNAYIFLGEFETA 68 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------------------CCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 5566666666666677777776666666521110 01112234566677777777777777
Q ss_pred HHHHHHHHhcCCCC------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhCCCHHHH
Q psy3014 398 VKEYTEAINRNPDD------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDP------KFLKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 398 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A 465 (570)
+.++++++...+.. ..++..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|
T Consensus 69 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 77777776654322 44667777777777777777777777776532 1245667778888888888888
Q ss_pred HHHHHHHHhhCCC
Q psy3014 466 IDAYEKALELDAS 478 (570)
Q Consensus 466 ~~~~~~al~~~p~ 478 (570)
+.++++++++...
T Consensus 149 ~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 149 MHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-11 Score=101.17 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---h
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---F 314 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~ 314 (570)
+..+.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+..+++++...+. .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4567788888888888888888888888888775432 246777888888888888888888887765432 2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCH
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKY 394 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (570)
.....++..+|.++...|++++|+.++++++...+. ....+....++..+|.++...|++
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~~la~~~~~~g~~ 145 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------------------LKDRIGEGRACWSLGNAYTALGNH 145 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------------ccchHhHHHHHHHHHHHHHHccCH
Confidence 233566777777777777777777777777652110 001123344555566666666666
Q ss_pred HHHHHHHHHHHhc
Q psy3014 395 ADAVKEYTEAINR 407 (570)
Q Consensus 395 ~~A~~~~~~al~~ 407 (570)
++|+.+++++++.
T Consensus 146 ~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 146 DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-13 Score=104.83 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCC------hhHHh
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDW------PKGYS 83 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 83 (570)
++..++.+|..++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHhhccCHHHHHHHHHHh
Q psy3014 84 RKGSALSYLGRYKESISTYEEG 105 (570)
Q Consensus 84 ~la~~~~~~g~~~~A~~~~~~a 105 (570)
.+|.++..+|+++.|+..+++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=98.22 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 395 ADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 395 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--cHHHHHHHHHHHHHhcC
Q psy3014 475 LDAS--NAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 475 ~~p~--~~~~~~~l~~~~~~~~~ 495 (570)
++|+ +..+...+...+..+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 45666666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-10 Score=109.12 Aligned_cols=133 Identities=11% Similarity=-0.115 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------------------
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA----------------------- 419 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la----------------------- 419 (570)
....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+...+...+
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccch
Confidence 334555555577778888888888888888888888888888888 87654443333
Q ss_pred -----------------HHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHH
Q psy3014 420 -----------------ACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ-QQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 420 -----------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 481 (570)
....+.+..+.|...|+++ ...+.....|...|.+....| +.+.|...|+.+++..|+++.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 2333467788899999998 433334566666677666655 589999999999999999888
Q ss_pred HHHHHHHHHHHhcCCH
Q psy3014 482 AVEGYRQCSIAVSSNP 497 (570)
Q Consensus 482 ~~~~l~~~~~~~~~~~ 497 (570)
.+..++.....+|+..
T Consensus 356 ~~~~yid~e~~~~~~~ 371 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEE 371 (493)
T ss_dssp HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHH
Confidence 8888888877777633
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=100.32 Aligned_cols=93 Identities=28% Similarity=0.418 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC------HHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF------LKGWIR 451 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 451 (570)
+..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566667777777777777777777777777666667777777777777777777777777766666 666666
Q ss_pred HHHHHHhCCCHHHHHHHHH
Q psy3014 452 KGKILQGMQQQSKAIDAYE 470 (570)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~ 470 (570)
+|.++..+|+++.|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 6666666666655554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-11 Score=89.46 Aligned_cols=82 Identities=28% Similarity=0.427 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
+.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hh
Q psy3014 492 AV 493 (570)
Q Consensus 492 ~~ 493 (570)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-11 Score=87.17 Aligned_cols=87 Identities=24% Similarity=0.388 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKG 453 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 453 (570)
.|..+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q psy3014 454 KILQGMQ 460 (570)
Q Consensus 454 ~~~~~~g 460 (570)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-11 Score=89.09 Aligned_cols=89 Identities=18% Similarity=0.322 Sum_probs=72.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--cHHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS--NAEAVE 484 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 484 (570)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|+ +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 368888999999999999999999999999999999999999999999999999999999999999988764 455556
Q ss_pred HHHHHHHHhcC
Q psy3014 485 GYRQCSIAVSS 495 (570)
Q Consensus 485 ~l~~~~~~~~~ 495 (570)
.+..++...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 66666665554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=90.43 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=73.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDDPK-YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQ 460 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 460 (570)
+..|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677888888888888888888888888888 88888888888888888888888888888888777644 5
Q ss_pred CHHHHHHHHHHHHhhCCCcH
Q psy3014 461 QQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 461 ~~~~A~~~~~~al~~~p~~~ 480 (570)
.+.+|+..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67778888888887777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=93.03 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc-hhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhc
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI-LFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL 92 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 92 (570)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred cCHHHHHHHHHHhhccCCCcH
Q psy3014 93 GRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 93 g~~~~A~~~~~~al~~~p~~~ 113 (570)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 677888999999888887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=89.05 Aligned_cols=95 Identities=8% Similarity=-0.052 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
++..+++++..+|.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|++++.+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34455555559999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHH
Q psy3014 443 PKF--LKGWIRKGKILQ 457 (570)
Q Consensus 443 p~~--~~~~~~l~~~~~ 457 (570)
|.. ......+...+.
T Consensus 84 ~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 84 QSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH
Confidence 753 344444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-09 Score=85.53 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHH
Q psy3014 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCE 436 (570)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~ 436 (570)
++|+..++++.......+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 3333444443335533333 999999999999999999999987 689999999999999 899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 437 TCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 437 ~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99986 679999999999999 99999999999999987 4566665554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=84.37 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=67.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF 445 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 445 (570)
.+|+++.+++.+|.++...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+..|++++.+.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999987643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-08 Score=86.58 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=93.1
Q ss_pred CChhhHHHHHHHHHHHHH-----CCC------HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHh-----cChHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFK-----NGK------YADAVKEYTEAINRNPD--DPKYYSNRAACYTKL-----AAFDLGLKD 434 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~ 434 (570)
.+|++++.++-.|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 678888887777666532 233 46899999999999999 677999999999995 999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhCCCc
Q psy3014 435 CETCLKLDPKF-LKGWIRKGKILQG-MQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 435 ~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 479 (570)
|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999988773
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-09 Score=101.77 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=109.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 287 IAAVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 287 la~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
.+..+..+|+|++|+..++++++. .|+++....++.++|.+|..+|+|++|+.++++++...
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~------------- 381 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY------------- 381 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------
Confidence 344567889999999999999854 57777889999999999999999999999999998731
Q ss_pred HHHHHHHHHh-cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcChHHHH
Q psy3014 362 KKIKEEEKKA-YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDP---KYYSNRAACYTKLAAFDLGL 432 (570)
Q Consensus 362 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~ 432 (570)
++.+ ..+|.....+.++|.+|..+|++++|+.+|++++.+ .|++| .....++.++..++.+++|.
T Consensus 382 ------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 382 ------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp ------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 156777888999999999999999999999999875 45554 45677888888888888888
Q ss_pred HHHHHHHh
Q psy3014 433 KDCETCLK 440 (570)
Q Consensus 433 ~~~~~al~ 440 (570)
..|.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-09 Score=101.01 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----ccC
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEF-----DPTDI---TFQNNIAAVYFERKEYDQCIEQYIQKIEN-----RAD 313 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~~~ 313 (570)
.......+..+..+|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 444555666788999999999999999986 45554 57789999999999999999999999954 577
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHCC
Q psy3014 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY-IDPVKAEEAKERGNELFKNG 392 (570)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 392 (570)
++..+..+.++|.+|..+|++++|+.+|++++... ++.+- .+|...+....++.++..++
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~-------------------~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL-------------------LVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------HHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998732 11111 45667777889999999999
Q ss_pred CHHHHHHHHHHHHhc
Q psy3014 393 KYADAVKEYTEAINR 407 (570)
Q Consensus 393 ~~~~A~~~~~~al~~ 407 (570)
.+++|...|.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.4e-09 Score=82.47 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhc
Q psy3014 377 KAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKL 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 441 (570)
++.+.+.+|.+|.. .+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 34455555555555 45555555555555544 345555555555555 55555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-09 Score=82.05 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLA---AFDLGLKDCETCLKLD-P-KFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
...+.+.|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ | +..+++|.+|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888889999999999999988 6679999999999988 7 5688999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
++++++++|+|..+......+..++.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888777665553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=91.72 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=90.9
Q ss_pred HHHhcCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 272 KAVEFDPTDITFQ--NNIAAVYFERKE---YDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 272 ~al~~~p~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
++....|.++.+| +..|..+...++ ..+|+.+|+++++++|++ +.++..++.+|... ....
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~---a~A~A~la~a~~~~-----------~~~~ 250 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF---TYARAEKALVDIVR-----------HSQH 250 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHH-----------HHHS
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-----------hccC
Confidence 4445577776655 556666666544 588999999999999999 88888888887611 0000
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy3014 347 EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLA 426 (570)
Q Consensus 347 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 426 (570)
|........ ...|... ..++...|.++.++..++..+...|
T Consensus 251 ----------------------------~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 251 ----------------------------PLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp ----------------------------CCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred ----------------------------CCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCC
Confidence 000000000 0112221 1223445666666666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH
Q psy3014 427 AFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480 (570)
Q Consensus 427 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 480 (570)
++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..+
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 666666666666666653 44555666666666666666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=73.85 Aligned_cols=72 Identities=18% Similarity=0.034 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 408 NPDDPKYYSNRAACYTKLAA---FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
+|+++.++..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876666 6888888888888888888888888888888888888888888888888874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-08 Score=91.10 Aligned_cols=151 Identities=11% Similarity=-0.038 Sum_probs=101.3
Q ss_pred hcccChhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy3014 309 ENRADFKLIAKALQRIGNCYKKMED---WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERG 385 (570)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (570)
...|.+.. +.-++..|..+...+. ..+|+.+|+++++ .+|+.+.++-.++
T Consensus 188 ~~~p~~~~-Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--------------------------lDP~~a~A~A~la 240 (372)
T 3ly7_A 188 KILPHRGA-LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--------------------------SSPEFTYARAEKA 240 (372)
T ss_dssp HHSCSSGG-GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHH
T ss_pred ccCCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHH
Confidence 33444422 3334445555555433 4677777888777 8999999999888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q psy3014 386 NELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 386 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (570)
.++.. . ....|........ ...|... ..++..+|..+.++..+|..+...|++++|
T Consensus 241 ~a~~~-----------~--~~~~~~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A 296 (372)
T 3ly7_A 241 LVDIV-----------R--HSQHPLDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDES 296 (372)
T ss_dssp HHHHH-----------H--HHHSCCCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHH-----------H--hccCCCchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence 88871 1 1111222221111 1233331 234577899999999999999989999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHH---HHHHcCCchHH
Q psy3014 466 IDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEV---RKRAMGDPEVQ 511 (570)
Q Consensus 466 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~---~~~~~~~p~~~ 511 (570)
+..+++|+.++|+ ..++..++.++...|+..++. .+.+..+|...
T Consensus 297 ~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 297 YQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999985 678899999999999965433 34445566554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=82.60 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=69.6
Q ss_pred HHHHhcCChh--hHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-hcChHHHHHHHHH
Q psy3014 367 EEKKAYIDPV--KAEEAKERGNELFKN-----GKYADAVKEYTEAINRNPDD-PKYYSNRAACYTK-LAAFDLGLKDCET 437 (570)
Q Consensus 367 ~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~ 437 (570)
++++++++|. +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++
T Consensus 186 lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 186 LERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3333338888 677999999999995 99999999999999999975 9999999999988 4999999999999
Q ss_pred HHhcCCCC
Q psy3014 438 CLKLDPKF 445 (570)
Q Consensus 438 al~~~p~~ 445 (570)
++..+|..
T Consensus 266 AL~a~p~~ 273 (301)
T 3u64_A 266 ALAIDPES 273 (301)
T ss_dssp HHHCCGGG
T ss_pred HHcCCCCC
Confidence 99988773
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.4e-08 Score=70.64 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH
Q psy3014 374 DPVKAEEAKERGNELFKNGK---YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 446 (570)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57889999999999986666 79999999999999999999999999999999999999999999999999843
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.7e-08 Score=76.11 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHhcChHHHHHH
Q psy3014 360 MEKKIKEEEKKAYIDPVKAEEAKERGNELFKNG---KYADAVKEYTEAINRN-P-DDPKYYSNRAACYTKLAAFDLGLKD 434 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~ 434 (570)
+..+...|.+....++.+.++.+.+|+++.+.+ +.++++..++.+++.+ | ++.++++++|..++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344445555555578889999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q psy3014 435 CETCLKLDPKFLKGWIRKGKI 455 (570)
Q Consensus 435 ~~~al~~~p~~~~~~~~l~~~ 455 (570)
++++++++|++..+....-.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 999999999998887654443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=71.35 Aligned_cols=78 Identities=14% Similarity=-0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLD-------PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
+.-.+.+|..++..|+|..|+.+|++|+... +..+.++..+|.++.++|+++.|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445556666666666666666666665542 234566777777777777777777777777777777777766
Q ss_pred HHHHH
Q psy3014 485 GYRQC 489 (570)
Q Consensus 485 ~l~~~ 489 (570)
++..+
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 66633
|
| >2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=66.44 Aligned_cols=65 Identities=49% Similarity=0.819 Sum_probs=60.5
Q ss_pred cCCHHHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHhcCchhhh
Q psy3014 494 SSNPEEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVLA 558 (570)
Q Consensus 494 ~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (570)
|..+++....+..||++..++.||.+..+++.+.++|.++..|++||+|+..+++++..|+++++
T Consensus 6 ~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~aGii~~~ 70 (71)
T 2llw_A 6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAAGIIRTG 70 (71)
T ss_dssp CSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHHTTSSCCC
T ss_pred CCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHHcchhhcC
Confidence 34677888889999999999999999999999999999999999999999999999999998864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-07 Score=69.71 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRN-------PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
++.-.+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++.++|+++.|+..+++++.++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567899999999999999999999999863 34578999999999999999999999999999999999988
Q ss_pred HHHH
Q psy3014 450 IRKG 453 (570)
Q Consensus 450 ~~l~ 453 (570)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8776
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=90.06 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCC---CHHHHHHH
Q psy3014 389 FKNGKYADAVKEYTEAINR-----NPDDP---KYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPK---FLKGWIRK 452 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l 452 (570)
...|+|++|+..+++++++ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|+ -...+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999975 45554 57889999999999999999999999975 344 45678899
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhh-----CCCcHHHHHH
Q psy3014 453 GKILQGMQQQSKAIDAYEKALEL-----DASNAEAVEG 485 (570)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 485 (570)
|.+|..+|++++|+..|++|+++ .|+++.+...
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999999999986 4777766543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.4e-08 Score=92.51 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCC---cchhhchhHHHhcccCHHHHHHHHhchhcc--------
Q psy3014 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKL-----DGTN---HILFSNRSAAFAKEGNYEKALEDAEKTISL-------- 74 (570)
Q Consensus 11 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 74 (570)
+...+..+......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445555556678999999999999985 4555 456889999999999999999999999965
Q ss_pred CCCChhHHhHHHHHHhhccCHHHHHHHHHHhhcc-----CCCcHHHHH
Q psy3014 75 KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL-----DPNNEQMKE 117 (570)
Q Consensus 75 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 117 (570)
+|+-...+.++|.+|..+|++++|+..|++++++ .|+++.+..
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 3445567999999999999999999999999975 577776554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=88.99 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=87.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCCC---HHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINR-----NPDD---PKYYSNRAACYTKLAAFDLGLKDCETCLKL-----DPKF---LKG 448 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 448 (570)
..-+..+|+|++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33456789999999999999975 3445 457899999999999999999999999975 3444 567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh-----CCCcHHHH---HHHHHHHHHh
Q psy3014 449 WIRKGKILQGMQQQSKAIDAYEKALEL-----DASNAEAV---EGYRQCSIAV 493 (570)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~ 493 (570)
++++|.+|..+|++++|+.+|++|+++ .|+++.+. .+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999985 47776655 4455555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-06 Score=82.96 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=94.3
Q ss_pred HHHHHhcCHHHHHHHHHHHhhc-----ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy3014 289 AVYFERKEYDQCIEQYIQKIEN-----RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363 (570)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 363 (570)
.-+...|+|++|+..++++++. .|+++....++.++|.+|..+|+|++|+.++++++...
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------------- 359 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------------- 359 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH---------------
Confidence 3456789999999999999954 57777889999999999999999999999999998732
Q ss_pred HHHHHHHh-cCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHh
Q psy3014 364 IKEEEKKA-YIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR-----NPDDPK---YYSNRAACYTKL 425 (570)
Q Consensus 364 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~ 425 (570)
++.. ..+|.....++++|.+|..+|++++|+.+|++++++ .|++|. ++.+++.+...+
T Consensus 360 ----~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 360 ----RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp ----HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 1111 167788888999999999999999999999999875 556654 445566655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=65.78 Aligned_cols=100 Identities=15% Similarity=0.011 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHhCCCHHHHHHH
Q psy3014 394 YADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDL---GLKDCETCLKLD-P-KFLKGWIRKGKILQGMQQQSKAIDA 468 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (570)
...+...|.+....++.+..+.+++|+++.+..+... ++..++..+..+ | ..-+.++.+|..++++|+|.+|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4556677777777777888999999999998877665 999999988876 5 4667889999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 469 YEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 469 ~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
++.+|+..|+|..+......+..++
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887766665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-06 Score=62.30 Aligned_cols=99 Identities=9% Similarity=0.062 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHH---HHHHHhchhccC-C-CChhHHhHHHHHHhhccCHHHHH
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEK---ALEDAEKTISLK-P-DWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
.....+...|.+.+..++.+..+.+++|.++.+..+... ++..++..+..+ | ..-+.++.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345566777888888788889999999999999887766 999999999987 6 56789999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
.+++.+++..|+|..+......+.
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999998876555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00028 Score=69.26 Aligned_cols=167 Identities=13% Similarity=0.010 Sum_probs=128.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc---------CHHHHHHHHHHHhhc--ccChhHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFD-PTDITFQNNIAAVYFERK---------EYDQCIEQYIQKIEN--RADFKLI 317 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~--~~~~~~~ 317 (570)
+...-..+.+.|+.++|+.+|+++.+.. +-+...|..+-.++...+ ..++|.+.|++.... .|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC----
Confidence 4445577789999999999999998753 224555665555555433 478899999987754 455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..++..+...|.+.|++++|...|++..... ..| +..+|..+-..+.+.|+.++|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHH
Confidence 6788889999999999999999999887632 233 456778888889999999999
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCC
Q psy3014 398 VKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKF 445 (570)
Q Consensus 398 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~ 445 (570)
...|++..+.. ..+...|..+-..+.+.|+.++|.+.+++.-+. .|+.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 99999988752 236778899999999999999999999987654 4543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-05 Score=58.56 Aligned_cols=112 Identities=19% Similarity=0.061 Sum_probs=96.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKY------ADAVKEYTEAINRNPDD--------PKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
+.|.+++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999988999 88999999999877642 3466666754 6779999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy3014 439 LKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEG 485 (570)
Q Consensus 439 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 485 (570)
+.++...+..|...|..-.++|+...|.+.+.+++.+.|...+.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99988899999999999999999999999999999999987766543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00016 Score=70.92 Aligned_cols=175 Identities=7% Similarity=0.025 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhcccCCH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIAKALQRIGNCYKKME---------DWKNAKVYFEKSMSEHRTP 351 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~~~~~ 351 (570)
.+...-..+.+.|+.++|++.|++..+. .|+ ..+|..+-.++...+ ..+.|...|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G--- 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK--- 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC---
Confidence 3455567788999999999999998854 455 456666666665443 3677777777766532
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcChHH
Q psy3014 352 EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN-PDDPKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 352 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 430 (570)
..| +..+|..+...+.+.|++++|...|++..+.. ..+...|..+-..|.+.|+.++
T Consensus 101 ---------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 101 ---------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp ---------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 233 46678889999999999999999999988752 3368889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Q psy3014 431 GLKDCETCLKL--DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALEL--DASNAEAVEGYRQ 488 (570)
Q Consensus 431 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 488 (570)
|.+.|++..+. .| +...|..+-..+.+.|+.++|.+.+++..+. .|+... +..+..
T Consensus 159 A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T-~~~l~~ 218 (501)
T 4g26_A 159 AYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST-FDMIEE 218 (501)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH-HHHHHH
Confidence 99999998875 34 4667888999999999999999999998764 565443 333433
|
| >2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-06 Score=54.40 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=51.0
Q ss_pred HHHHHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHHhhcCHHHHHHHHHHHh
Q psy3014 498 EEVRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVN 551 (570)
Q Consensus 498 e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (570)
++.+.++..||++..++.||.+...++.+.++|.++..+++||++...++++++
T Consensus 2 ~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 2 EEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp HHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00035 Score=53.33 Aligned_cols=85 Identities=13% Similarity=-0.084 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHhcCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 409 PDDPKYYSNRAACYTKLAAF---DLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
.-.+.+.+++|+++.+..+. .+++..++..+...|. .-+.++.+|..++++|+|.+|..+.+..|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788899999999887754 5789999999988884 5678889999999999999999999999999999999887
Q ss_pred HHHHHHHHh
Q psy3014 485 GYRQCSIAV 493 (570)
Q Consensus 485 ~l~~~~~~~ 493 (570)
....+..++
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.8e-05 Score=58.44 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccc---C
Q psy3014 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRA---D 313 (570)
Q Consensus 246 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~ 313 (570)
.-++++.-...++..|.|+.|+.....++....++ ..++..+|.+++..++|.+|...|+++++... .
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777888899999999999999877764332 34788999999999999999999999874321 1
Q ss_pred h-------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHH
Q psy3014 314 F-------------------KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356 (570)
Q Consensus 314 ~-------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 356 (570)
. ....++.+.++.||...+++.+|+..++.+-....++.+...
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~ 160 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINML 160 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHH
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHH
Confidence 1 011378899999999999999999999887665554444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=54.77 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCH------HHHHHHHHHHhhcccChh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3014 275 EFDPTDITFQNNIAAVYFERKEY------DQCIEQYIQKIENRADFK-----LIAKALQRIGNCYKKMEDWKNAKVYFEK 343 (570)
Q Consensus 275 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 343 (570)
-+.|++++.|..........|+. ++-++.|++++..-|... .....|...+.. ...++.++|...|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35788888888888888888888 788888888886655431 223444444433 344666666666666
Q ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 344 SMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
++. .+...+.+|...|..-.++|+...|.+.+.+++.+.|....
T Consensus 86 a~~--------------------------~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 86 ARA--------------------------NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHH--------------------------HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHH--------------------------HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 665 33334666666666666777777777777777766665443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.5e-05 Score=59.60 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcc---------hhhchhHHHhcccCHHHHHHHHhchhccC------C
Q psy3014 12 SLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHI---------LFSNRSAAFAKEGNYEKALEDAEKTISLK------P 76 (570)
Q Consensus 12 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 76 (570)
-.++.....++..|.|+.|+-....++....+++. +++.+|.+++..|+|..|...|++++... |
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45788889999999999999999998877544443 67899999999999999999999986431 1
Q ss_pred -------------------CChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 77 -------------------DWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 77 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
...+..+.+|.||.++|++++|+..++.+-. ....+.+...|+.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1236889999999999999999999875422 234566677777665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=55.23 Aligned_cols=83 Identities=13% Similarity=-0.086 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHhcCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLAAF---DLGLKDCETCLKLDPK-FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
.+.+.+++|+++.+..+. .+++..++..+..+|. ..+.++.+|..++++|+|.+|..+.+.+++..|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456667777777666543 4577777777766663 356677777777777777777777777777777777776555
Q ss_pred HHHHHHh
Q psy3014 487 RQCSIAV 493 (570)
Q Consensus 487 ~~~~~~~ 493 (570)
..+..++
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00077 Score=50.78 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHH
Q psy3014 376 VKAEEAKERGNELFKNGKY---ADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIR 451 (570)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 451 (570)
-.+.+.+.+|+++.+..+. .+++..++..++.+|. ..+.++.+|..++++|+|++|..+.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578899999999988764 5799999999998884 57899999999999999999999999999999999888765
Q ss_pred HHHH
Q psy3014 452 KGKI 455 (570)
Q Consensus 452 l~~~ 455 (570)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=50.22 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKY---ADAVKEYTEAINRNPD-DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWI 450 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 450 (570)
...+.+.+.+++++.+..+. .+++.+++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999988765 4799999999998884 5779999999999999999999999999999999988766
Q ss_pred HHHHH
Q psy3014 451 RKGKI 455 (570)
Q Consensus 451 ~l~~~ 455 (570)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=51.68 Aligned_cols=54 Identities=17% Similarity=0.429 Sum_probs=49.7
Q ss_pred HHHHcCCchHHHhhcCHHHHHHHHHhhcCHHHHHH-hhcCHHHHHHHHHHHhcCc
Q psy3014 501 RKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSD-HLKNPEIASKIQKLVNSGL 554 (570)
Q Consensus 501 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 554 (570)
+..+..||++...+.||.+..+++.+.++|.++.. +++||++...++++++.++
T Consensus 16 ~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 16 IENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp HHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 45677899999999999999999999999999999 9999999999999987753
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.017 Score=45.12 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=122.9
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 338 (570)
+-.+|+.++-.-.- +.|..++....++.+++-.|.|..|+-++... +. ..+.+.-+.||....++..|+
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT---~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NT---CTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CB---HHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHhc-----ch---HHHHHHHHHHHHHHHHHHHHH
Confidence 44566666432222 24555566778888899999999988766432 22 566777889999999999999
Q ss_pred HHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q psy3014 339 VYFEKSMS--EHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE-AKERGNELFKNGKYADAVKEYTEAINRNPDDPKYY 415 (570)
Q Consensus 339 ~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 415 (570)
.++++.+. ..+++++-..+. ..-.+|.+-+. +..+|.++...|+.++|+.++.......|-.+.+-
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~-----------~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQ-----------EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHH-----------TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhcccccCcccccccc-----------eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 99999983 232222111111 11156666554 45689999999999999999999988776443322
Q ss_pred HHH-----------------HHHHHHhcChHHHH--------HHHHHHHhcCCCCHHHH-HHHHHHHHhCCCHHHHHHHH
Q psy3014 416 SNR-----------------AACYTKLAAFDLGL--------KDCETCLKLDPKFLKGW-IRKGKILQGMQQQSKAIDAY 469 (570)
Q Consensus 416 ~~l-----------------a~~~~~~~~~~~A~--------~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~ 469 (570)
+.+ +.--.+...+.... ...++....-|.....+ ...+.-|+.+|-.++...+|
T Consensus 152 nliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf 231 (242)
T 3kae_A 152 NLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACF 231 (242)
T ss_dssp HHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHH
Confidence 111 00000000011111 22333334455543332 34677889999999999999
Q ss_pred HHHHhhCCCc
Q psy3014 470 EKALELDASN 479 (570)
Q Consensus 470 ~~al~~~p~~ 479 (570)
...-..||..
T Consensus 232 ~~lR~kDP~F 241 (242)
T 3kae_A 232 ELVRRKDPMF 241 (242)
T ss_dssp HHHHHHSTTT
T ss_pred HHHHhcCCCc
Confidence 9999999963
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.17 Score=47.10 Aligned_cols=123 Identities=14% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccc---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHH
Q psy3014 285 NNIAAVYFERKEYDQCIEQYIQKIENRA---DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361 (570)
Q Consensus 285 ~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 361 (570)
..+|.+|+..|+|.+|.+.+.+..+... +.....+++..-..+|...+++.++...+.++....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~------------- 169 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA------------- 169 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-------------
Confidence 4789999999999999999988875322 234567888888999999999999999999886521
Q ss_pred HHHHHHHHHhcCChh-hHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC--CH---HHHHHHHHHHHHhcC
Q psy3014 362 KKIKEEEKKAYIDPV-KAEEAKERGNELF-KNGKYADAVKEYTEAINRNPD--DP---KYYSNRAACYTKLAA 427 (570)
Q Consensus 362 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~~~~ 427 (570)
.++..+|. .+.....-|..+. ..++|..|...|-+++..... ++ .+...++.|-...++
T Consensus 170 -------~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 170 -------NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -------HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 11112332 3455566788889 899999999999999754322 12 234445555555555
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.025 Score=44.18 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=82.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------ 441 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------ 441 (570)
-|..++....++.+++-.|.|..|+-.+.. -+...+.+.-+.||.+.++|..|+..++..+.-
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 444556677889999999999998876643 356777888899999999999999999999832
Q ss_pred -----CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 442 -----DPKFLKG-WIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 442 -----~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
+|.+.+. +..+|.++.+.|+.++|+.+|......+|-.+.+-
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 2334443 45589999999999999999999999999766654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.016 Score=58.89 Aligned_cols=126 Identities=11% Similarity=0.056 Sum_probs=87.2
Q ss_pred hcC-HHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccc-------CCHHHHHHHHHHHH
Q psy3014 294 RKE-YDQCIEQYIQKIENRADFKLIAKALQRIGNCYK---KMEDWKNAKVYFEKSMSEH-------RTPEIRTLISEMEK 362 (570)
Q Consensus 294 ~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~ 362 (570)
.++ ++.|+..+++....+|.. .+++..+.+.. ...+--+|+..+.+.++.. +..+.
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~--------- 327 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA--------- 327 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH---------
T ss_pred cccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc---------
Confidence 444 688999999998888875 23333333222 2234456666666665410 00000
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC 438 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 438 (570)
......|.....+...+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 328 ------~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 ------DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ------ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0000123334566677888899999999999999999999999999999999999999999999888766
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=59.75 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 393 KYADAVKEYTEAINR--------NPDD----------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 393 ~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
+--+|+..+.++++. .+.+ ...+..-+..+...|+++-|+.+.++|+...|.....|+.|+.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~ 379 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR 379 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 344677777776642 2222 2345556777888999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHH
Q psy3014 455 ILQGMQQQSKAIDAYEKA 472 (570)
Q Consensus 455 ~~~~~g~~~~A~~~~~~a 472 (570)
+|..+|+|+.|+-.+..+
T Consensus 380 vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 380 CHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHhcC
Confidence 999999999999887766
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.25 Score=47.35 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHh----hcccCh
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD--PTD----ITFQNNIAAVYFERKEYDQCIEQYIQKI----ENRADF 314 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l----~~~~~~ 314 (570)
..+.....++.++...|++.+|...+.....-. ..+ .+.+.....++...+++.+|...++++. ...+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 456777889999999999999999999876431 111 4677788889999999999999998874 222333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 315 KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
......+...|.++...++|.+|-.+|..+..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34466777888999999999999999988876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.47 Score=49.87 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=102.4
Q ss_pred HHHHccCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 256 EAYKKKNFEEALA-HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 256 ~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
.....+++++|.. .+.. -| +.......+..+...|.+++|++..+ +|. .. .......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~~------~~---f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP-----DQD------QK---FELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC-----CHH------HH---HHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC-----Ccc------hh---eehhhhcCCH
Confidence 3456788888866 4411 11 01222566667777888888776542 111 11 2334667888
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN-------- 406 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------- 406 (570)
+.|.+..+ ..++...|..+|..+.+.++++.|+.+|.++-.
T Consensus 669 ~~A~~~~~-------------------------------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 669 TLARDLLT-------------------------------DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHT-------------------------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHH-------------------------------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence 88877752 223567889999999999999999999988621
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN---AEAV 483 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 483 (570)
....+...+..++......|++..|...|.+. .+ ......+|.+.+++++|...-++ ..|.. +.+.
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~ 786 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIV 786 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHH
Confidence 12344455555566666666666665554432 11 11233456666666666655443 44444 2344
Q ss_pred HHHHHHHHHhc
Q psy3014 484 EGYRQCSIAVS 494 (570)
Q Consensus 484 ~~l~~~~~~~~ 494 (570)
..++.-+...|
T Consensus 787 ~~~~~~L~~~~ 797 (814)
T 3mkq_A 787 TKWKENLILNG 797 (814)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 44444444444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.71 Score=43.00 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc----cChhHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPT--D----ITFQNNIAAVYFERKEYDQCIEQYIQKIENR----ADFKLIAKA 320 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~ 320 (570)
..+|..|+..|+|.+|.+.+.+.+..-.. + .+++..-..+|...+++.++...+.++.... ++....+..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 36899999999999999999988874221 1 4566777888999999999999999987543 333345666
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHhcc
Q psy3014 321 LQRIGNCYK-KMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 321 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~ 347 (570)
...-|..+. ..++|..|..+|-.+...
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 777788899 899999999999888753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.04 Score=51.88 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=81.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--------c--------------chhhchhHHHhcccCHHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN--------H--------------ILFSNRSAAFAKEGNYEKALE 66 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~la~~~~~~g~~~~A~~ 66 (570)
...+.+...|......|+.+.|...+.+|+.+.... . .+...++..+...|++.+|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344566667777778899999999999999885321 1 122245667788999999999
Q ss_pred HHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhc
Q psy3014 67 DAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107 (570)
Q Consensus 67 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 107 (570)
.+..++..+|-+..++..+..++...|+..+|+..|+++.+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.89 Score=43.54 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=121.6
Q ss_pred ccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH-HcC
Q psy3014 260 KKNFEEALAHYNKAVEF------DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK-KME 332 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~~~ 332 (570)
.|++++|++.+...-+. .+....+...+..++...|+|+...+.+.-..+.....+...........-+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777544432 24457778888889999999998877776555443333211111111111111 111
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP--D 410 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 410 (570)
..+... ....+..-.. ..+..+...-........++.++...|++.+|...+.......- .
T Consensus 109 ~~d~~~--~~~~i~~l~~---------------vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~ 171 (445)
T 4b4t_P 109 SLDLNT--RISVIETIRV---------------VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM 171 (445)
T ss_dssp TTHHHH--HHHHHHCCSS---------------SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS
T ss_pred chhHHH--HHHHHHHHHH---------------HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence 111100 0011100000 00000001123456677899999999999999999998764311 1
Q ss_pred ----CHHHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q psy3014 411 ----DPKYYSNRAACYTKLAAFDLGLKDCETCLK---LDPKFL----KGWIRKGKILQGMQQQSKAIDAYEKALEL 475 (570)
Q Consensus 411 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 475 (570)
-.+++.....+|...+++..|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 145788889999999999999999998742 223332 34566899999999999999999999865
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.16 Score=43.86 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=88.5
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCH
Q psy3014 255 NEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334 (570)
Q Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 334 (570)
..+++.|..++|+......++.+|.|......+..+++-.|++++|...++.+.+++|+.......|..+-.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 34567899999999999999999999999999999999999999999999999999999844333333222221
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q psy3014 335 KNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD 411 (570)
Q Consensus 335 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 411 (570)
..=...+.-...+.+. ..|.........+......|+.++|...-.++++..|..
T Consensus 79 ----~~R~~vfaG~~~P~~~------------------g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVL------------------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----HHHHHHTTSCCCEECC------------------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----HHHHHHHcCCCCCCCC------------------CCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111222211111000 122223333445666677899999999988888876643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.26 Score=42.55 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHH
Q psy3014 53 AAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116 (570)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (570)
...++.|+.++|+..+...++.+|.+......+..++.-.|+|+.|...++.+.+++|+.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 3567888999999999999999999999999999999999999999999999999999876543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.46 Score=38.23 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3014 258 YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307 (570)
Q Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 307 (570)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456666665555443 44555666666666666666555555553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.35 Score=38.90 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3014 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346 (570)
Q Consensus 279 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 346 (570)
.++...+.++ ...|+++.|.+..+.. ++ ...|..+|......|+++-|..+|.++-.
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----ND---SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3455555544 6789999999988765 34 67899999999999999999999998865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.65 E-value=1.1 Score=47.08 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=102.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
......+...|.+++|+...+ ++...+ ......|++++|.+..+.. ++ ...|..+|..+..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~~---~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----SA---EMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----CC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----Cc---HhHHHHHHHHHHH
Confidence 455666777888888876553 333223 3457789999999886432 33 6789999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.++++.|..+|.++-. +..+...+. ...+.+.+..++......|++..|..+|.+. +
T Consensus 694 ~~~~~~A~~~y~~~~d-------------~~~l~~l~~-----~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g 750 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHD-------------LESLFLLHS-----SFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----G 750 (814)
T ss_dssp TTCHHHHHHHHHHHTC-------------HHHHHHHHH-----HTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----T
T ss_pred cCCHHHHHHHHHHccC-------------hhhhHHHHH-----HcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----C
Confidence 9999999999998754 111111111 1223444556677777777777776665442 1
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCCHHH
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~ 464 (570)
++ .....+|...+++++|+...++ ..|.. +......+.-+...|+.+.
T Consensus 751 ~~---~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~~ 801 (814)
T 3mkq_A 751 DI---QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNTV 801 (814)
T ss_dssp CH---HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CH---HHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchhH
Confidence 11 1234456666777777665554 34433 2444455666666776543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.27 Score=46.21 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDD----------------------PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
..|......|+.+.|...+.+++.+.... ..+...++..+...|++.+|+..+..++.
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444556788888999999988764221 11344566777788888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALE 474 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 474 (570)
.+|-+..++..+-.++...|+..+|+..|+++-.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887644
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.62 Score=44.70 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=91.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHhcCHHHHH----------HHHHHHhh
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVE-----------FDPTDITFQNNIAAVYFERKEYDQCI----------EQYIQKIE 309 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~l~ 309 (570)
...-..++..+++++|..+-...+. +++-...+|+..+.++...|+..... ..+-.+++
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3344456778899999888776651 13445677888888888777765432 12222221
Q ss_pred ---cccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy3014 310 ---NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386 (570)
Q Consensus 310 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 386 (570)
+.-+....+..+..+-..|...+.++.|..+..++.- |.... .++.....++.+|.
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~-------------------sn~q~~rY~YY~GR 278 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDV-------------------SSSLEARYFFYLSK 278 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTS-------------------CHHHHHHHHHHHHH
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccC-------------------CHHHHHHHHHHHHH
Confidence 1122233477888899999999999999999999852 21100 12234667788999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q psy3014 387 ELFKNGKYADAVKEYTEAINRNPDDP-------KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF---LKGWIRKGKIL 456 (570)
Q Consensus 387 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 456 (570)
++.-+++|.+|..++..|+...|.+. .++-.+..+-.-+|+...-. .| ..|.. ...|..++.++
T Consensus 279 I~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~-lf-----~q~~l~~~L~pY~~Lv~Av 352 (523)
T 4b4t_S 279 INAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELS-FF-----HQSNMQKSLLPYYHLTKAV 352 (523)
T ss_dssp HHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHH-HH-----TTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChH-Hh-----hchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999887542 23223333334457654311 11 12222 22355566665
Q ss_pred HhCCC---HHHHHHHHHHHHhhCCCcHH
Q psy3014 457 QGMQQ---QSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 457 ~~~g~---~~~A~~~~~~al~~~p~~~~ 481 (570)
+.|+ +..+++-++..+..+-+..-
T Consensus 353 -r~GdL~~F~~~L~~h~~~F~~Dgty~L 379 (523)
T 4b4t_S 353 -KLGDLKKFTSTITKYKQLLLKDDTYQL 379 (523)
T ss_dssp -HHTCHHHHHHHHHHTHHHHHHTTCTHH
T ss_pred -HcCCHHHHHHHHHHhcceeccCChhHH
Confidence 3354 55666666777776655443
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.098 Score=50.54 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..+..+|.+......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677899888888999999999999999999999999999999999999999999999988777788888888877654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.057 Score=51.65 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHH
Q psy3014 280 DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISE 359 (570)
Q Consensus 280 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 359 (570)
-..++..+|..|...|++++|.+.|.++.............+..+..++...+++..+...+.++.......
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 345788999999999999999999999987765555568889999999999999999999999986532211
Q ss_pred HHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q psy3014 360 MEKKIKEEEKKAYIDPV-KAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409 (570)
Q Consensus 360 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 409 (570)
.+|. ........|.++...++|.+|...|-.++....
T Consensus 202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1221 123445567888899999999999998876543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.13 Score=49.13 Aligned_cols=103 Identities=10% Similarity=-0.102 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CCCH---
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD---DPKYYSNRAACYTKLAAFDLGLKDCETCLKLD--PKFL--- 446 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~--- 446 (570)
.....++..+|..+...|++++|.++|.++...... ..+.++....++...+++..+...+.++-... ..++
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 334557788999999999999999999999876433 36788889999999999999999999986542 1222
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 447 -KGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 447 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
......|.++...++|.+|..+|-.++....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2344567888899999999999999887643
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.065 Score=51.31 Aligned_cols=124 Identities=9% Similarity=-0.047 Sum_probs=68.4
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHhc-----CCC-CHHHHHHHHHHHHHhcChHHHHHHHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAV----------KEYTEAINR-----NPD-DPKYYSNRAACYTKLAAFDLGLKDCE 436 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~----------~~~~~al~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 436 (570)
.++-.+.+|+..+.++...|+..... ..+-.+++. ++. ...++..+-..|...+.|+.|.....
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvs 255 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFIS 255 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHh
Confidence 45556777888888877777665432 222233322 222 35678888999999999999999999
Q ss_pred HHHhcCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHhcCCHH
Q psy3014 437 TCLKLDPKF-------LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA-------EAVEGYRQCSIAVSSNPE 498 (570)
Q Consensus 437 ~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~e 498 (570)
++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+. .++..+.-+..-+|+.++
T Consensus 256 k~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 256 KLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 985 3322 34567789999999999999999999999887653 233344555555777554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.12 Score=50.06 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 359 EMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423 (570)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 423 (570)
.+..|...|.++....|.....+..+|.+....|+.-+|+-+|.+++......+.+..++...+.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666555555555555555544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=3.1 Score=41.57 Aligned_cols=107 Identities=4% Similarity=-0.087 Sum_probs=62.0
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc------------------C-----CCC
Q psy3014 389 FKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL------------------D-----PKF 445 (570)
Q Consensus 389 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~-----p~~ 445 (570)
++.|+++.|..+|...-...+..+...+.+|.++...|+.++|...|+++... . +..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~ 375 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNV 375 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCC
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhH
Confidence 34466666666665543332334555666666666666666666666655431 0 000
Q ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCH
Q psy3014 446 -----LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497 (570)
Q Consensus 446 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 497 (570)
.......+..+...|....|...+...+... ++.-...++.+....|...
T Consensus 376 ~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHH
T ss_pred HhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChH
Confidence 1123456677888899999988888777642 2344445666656666543
|
| >2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.013 Score=39.12 Aligned_cols=65 Identities=31% Similarity=0.684 Sum_probs=57.4
Q ss_pred cccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHh-hccCccHHHHHHHHhcCcc
Q psy3014 135 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTT-KLKDPRMMTTLSVLLGVNM 199 (570)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 199 (570)
.++..|+.++.+..+..+|....++.++.+...+..+..+|..... ++.++++...+..+.++..
T Consensus 5 ~~~~~f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 5 GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp CCHHHHHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred hHhhhccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 3445566778888899999999999999999999999999999999 9999999999999987653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.09 E-value=2.8 Score=45.84 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=96.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcc-cC------------------
Q psy3014 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR-AD------------------ 313 (570)
Q Consensus 253 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~------------------ 313 (570)
+...+...+.++-|.. .+...|.++...+.+|.++...|++++|..+|+++-..- .+
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344555666665544 344567888888999999999999999999998874211 00
Q ss_pred -hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHC
Q psy3014 314 -FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPV-KAEEAKERGNELFKN 391 (570)
Q Consensus 314 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 391 (570)
....+..|..+..++.+.+.++.+++..+.|++.... .++. ....|..+-..+...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~----------------------~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET----------------------DDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS----------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC----------------------CChhhHHHHHHHHHHHHHhh
Confidence 0112345667777888888888888888888764321 1121 223567777788889
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCh
Q psy3014 392 GKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAF 428 (570)
Q Consensus 392 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 428 (570)
|+|++|...+...-.. ......+..+....+..|..
T Consensus 952 ~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTT-PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CCSGGGGHHHHHHHHS-SSCHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCCh
Confidence 9999998777544222 22344555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=5.5 Score=39.80 Aligned_cols=187 Identities=9% Similarity=-0.019 Sum_probs=113.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITF----QNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+.......+.+.|...+.......+-+... +..++.-....+...++...+.+......++ ...-...+ .
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~r-~ 294 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST---SLIERRVR-M 294 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH---HHHHHHHH-H
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh---HHHHHHHH-H
Confidence 34444555668888888887776543333322 2223333333443456666666655444443 22222233 3
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
....|+++.|...|.+.-. .....+...+-+|..+...|+.++|...|.++...
T Consensus 295 Alr~~d~~~a~~~~~~l~~--------------------------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPM--------------------------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCT--------------------------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHHHccc--------------------------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 3456888888888877654 22345666677777777788888888777776532
Q ss_pred C-----------------------CC--C---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 408 N-----------------------PD--D---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 408 ~-----------------------p~--~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
. +. . ...-...+..+...|....|...+...+... +......++.+....
T Consensus 349 ~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~ 426 (618)
T 1qsa_A 349 RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNN 426 (618)
T ss_dssp CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Confidence 0 00 0 0123456777889999999999888877642 244556778888888
Q ss_pred CCHHHHHHHHH
Q psy3014 460 QQQSKAIDAYE 470 (570)
Q Consensus 460 g~~~~A~~~~~ 470 (570)
|.+..++....
T Consensus 427 ~~~~~~v~~~~ 437 (618)
T 1qsa_A 427 QWWDLSVQATI 437 (618)
T ss_dssp TCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 88888775544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.64 E-value=8 Score=40.43 Aligned_cols=208 Identities=10% Similarity=0.016 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHH
Q psy3014 249 KEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCY 328 (570)
Q Consensus 249 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 328 (570)
+-+.+|.++.-.|+-+.....+..+.+...++..-...+|..+...|+.+.+-...+.... ..+......+-..+|..|
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 4455788888888877777777766654433333333444445566777666655555443 333323345556778888
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRN 408 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 408 (570)
...|+...-...+..+... ..++....-.+|..+...|+.+.+...+....+
T Consensus 571 aGTGn~~aIq~LL~~~~~d--------------------------~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-- 622 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSD--------------------------SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-- 622 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHC--------------------------SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--
T ss_pred cCCCCHHHHHHHHHHhccC--------------------------CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--
Confidence 8899976555577666652 112222222333334444554434443332222
Q ss_pred CCCHHHHHHHHHHHHHh--cC-hHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCCC-----HHHHHHHHHHHHhhCC
Q psy3014 409 PDDPKYYSNRAACYTKL--AA-FDLGLKDCETCLKLDPKFL---KGWIRKGKILQGMQQ-----QSKAIDAYEKALELDA 477 (570)
Q Consensus 409 p~~~~~~~~la~~~~~~--~~-~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~p 477 (570)
..++.+.+..+.++-.. |+ ..+|+..+.+... +++.. .+...+|.+.....+ ..+-++.+.+.+.-.-
T Consensus 623 ~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 23566555554444333 22 3678887777754 44432 245556666655443 3334444444443222
Q ss_pred CcHHHHHHH
Q psy3014 478 SNAEAVEGY 486 (570)
Q Consensus 478 ~~~~~~~~l 486 (570)
.++.++...
T Consensus 702 ~d~~~~fga 710 (963)
T 4ady_A 702 QEGLAKFGA 710 (963)
T ss_dssp SCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 344444433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.62 E-value=1.5 Score=47.94 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHH
Q psy3014 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDP-TDI----TFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKAL 321 (570)
Q Consensus 247 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 321 (570)
+.-|..+..++.+.+.++.++++...|++..+ ++. ..|..+=..+...|+|++|...+...- +......++
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p----d~~~r~~cL 974 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS----TTPLKKSCL 974 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH----HSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC----CHHHHHHHH
Confidence 34566677788888999999999999988654 332 256667777888899998877775432 211124555
Q ss_pred HHHHHHHHHcCCHHH
Q psy3014 322 QRIGNCYKKMEDWKN 336 (570)
Q Consensus 322 ~~l~~~~~~~~~~~~ 336 (570)
..+-......|..+.
T Consensus 975 r~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCChhh
Confidence 556555555555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=1.7 Score=45.59 Aligned_cols=105 Identities=6% Similarity=-0.011 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--ccChhHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEF----DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIEN--RADFKLIA 318 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~ 318 (570)
..-..+..+-..+.+.|+.++|..+|.+..+. ..-+...|..+...|.+.|+.++|.++|++..+. .|+ .
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----v 200 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----L 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----H
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----H
Confidence 45667888999999999999999999776432 3446788999999999999999999999999754 566 6
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHhcccCCHHH
Q psy3014 319 KALQRIGNCYKKMED-WKNAKVYFEKSMSEHRTPEI 353 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 353 (570)
.+|..+-.++.+.|+ .++|...|++.....-.++.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 778888888889887 57899999999887655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.17 E-value=1.7e-05 Score=73.73 Aligned_cols=224 Identities=14% Similarity=0.191 Sum_probs=134.9
Q ss_pred CCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3014 43 TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122 (570)
Q Consensus 43 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 122 (570)
+.+.+|..+|.+++..++..+|++.|-++ +++..+...-.+..+.|++++=+.++.-+-+.-. .+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 45789999999999999999999988665 3444566667777789999999998887776532 23333344444
Q ss_pred HHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCC
Q psy3014 123 RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSST 202 (570)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (570)
|.... . ...+...+..++.
T Consensus 126 yAk~~-r---L~elEefl~~~N~--------------------------------------------------------- 144 (624)
T 3lvg_A 126 LAKTN-R---LAELEEFINGPNN--------------------------------------------------------- 144 (624)
T ss_dssp HHTSC-S---SSTTTSTTSCCSS---------------------------------------------------------
T ss_pred HHhhC-c---HHHHHHHHcCCCc---------------------------------------------------------
Confidence 44311 1 1111111110000
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q psy3014 203 MGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDIT 282 (570)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (570)
.-....|.-++..|.|+.|.-+|... .
T Consensus 145 ---------------------------------------------A~iq~VGDrcf~e~lYeAAKilys~i--------s 171 (624)
T 3lvg_A 145 ---------------------------------------------AHIQQVGDRCYDEKMYDAAKLLYNNV--------S 171 (624)
T ss_dssp ---------------------------------------------SCTHHHHHHHHHSCCSTTSSTTGGGS--------C
T ss_pred ---------------------------------------------ccHHHHHHHHHHccCHHHHHHHHHhC--------c
Confidence 00124677888888888887666542 2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy3014 283 FQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEK 362 (570)
Q Consensus 283 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
-|..++.++..+|+|..|++.-+++ ++ +.+|-....++...+++.-|..+--..+-
T Consensus 172 N~akLAstLV~L~~yq~AVdaArKA-----ns---~ktWKeV~~ACvd~~EfrLAqicGLniIv---------------- 227 (624)
T 3lvg_A 172 NFGRLASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLHIVV---------------- 227 (624)
T ss_dssp CCTTTSSSSSSCSGGGSSTTTTTTC-----CS---SCSHHHHTHHHHHSCTTTTTTHHHHHHHC----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc-----CC---hhHHHHHHHHHhCchHHHHHHHhcchhcc----------------
Confidence 2345677777888888777765544 22 45666667777777777777666555543
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
.|+. +-.+...|...|.|++-+..++.++.+..-+...+..||.+|.+
T Consensus 228 -----------hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 228 -----------HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp -----------CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred -----------cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 1111 11122334556666666666666666655566666666665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.12 E-value=1.2 Score=46.62 Aligned_cols=101 Identities=8% Similarity=-0.076 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCCCHHH
Q psy3014 375 PVKAEEAKERGNELFKNGKYADAVKEYTEAINR----NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL--DPKFLKG 448 (570)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 448 (570)
......+..+-..+.+.|+.++|...|.+.-+. ..-+...|+.+-..|.+.|+.++|.+.|++.... .| +...
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence 334556778888899999999999999765432 3347888999999999999999999999988764 45 4667
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHhhC
Q psy3014 449 WIRKGKILQGMQQ-QSKAIDAYEKALELD 476 (570)
Q Consensus 449 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 476 (570)
|..+-.++.+.|+ .++|.+.|++..+..
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7777778888887 478888888887653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.82 E-value=15 Score=32.88 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 374 DPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.-.++..+..+|..+.+.|++.+|..+|-
T Consensus 130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 130 KFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34578889999999999999988888774
|
| >2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.02 E-value=0.43 Score=30.66 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=47.1
Q ss_pred hHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCc
Q psy3014 144 NIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVN 198 (570)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
+.+..+..+|.....+.++.+...+..+..+|.....+++++++...+..+.++.
T Consensus 3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~ 57 (62)
T 2lnm_A 3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLF 57 (62)
T ss_dssp HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHh
Confidence 3455666777777888999999999999999999999999999999998887653
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.77 E-value=13 Score=39.54 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=72.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-C--------------------
Q psy3014 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKL-D-------------------- 442 (570)
Q Consensus 384 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-------------------- 442 (570)
+...+...|.++-|. +.+...|.++..-+.+|.++...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556667788877554 456778888888899999999999999999999986421 0
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCcHHH
Q psy3014 443 PK--FLKGWIRKGKILQGMQQQSKAIDAYEKALEL-DASNAEA 482 (570)
Q Consensus 443 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~ 482 (570)
++ ....|.....++.+.|-++.++..-+.|++. .++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 01 1235667888999999999999999999964 4555553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 570 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-33 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-24 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-21 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-15 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-15 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-09 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-14 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-08 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-13 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 8e-10 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.003 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.003 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 5e-13 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 0.003 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-10 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.001 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-06 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-07 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 5e-10 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 7e-10 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 9e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 2e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 9e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.002 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-08 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-07 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 9e-04 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-06 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-04 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 6e-04 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 9e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (326), Expect = 1e-33
Identities = 63/447 (14%), Positives = 134/447 (29%), Gaps = 61/447 (13%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
+ + QA +F A + + + N + S+ + +++ + I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
P + YS G+ G+ +E+I Y + + +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHY--------RHALRLKPDFIDGYINLAAALVA 113
Query: 134 DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSV 193
+ + ++ + +++ + ++
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 194 LLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKEL 253
LG ++ A +K +T + L
Sbjct: 174 NLGCVFNAQGEIWLAIHHF------------------------EKAVTLDPNFLDAYINL 209
Query: 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313
GN + + F+ A+A Y +A+ P N+A VY+E+ D I+ Y + IE +
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
F A + N K+ A+ + ++
Sbjct: 270 F---PDAYCNLANALKEKGSVAEAEDCYNTALRLC------------------------- 301
Query: 374 DPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLK 433
P A+ N + G +AV+ Y +A+ P+ +SN A+ + L
Sbjct: 302 -PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 434 DCETCLKLDPKFLKGWIRKGKILQGMQ 460
+ +++ P F + G L+ MQ
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 7e-24
Identities = 41/273 (15%), Positives = 78/273 (28%), Gaps = 45/273 (16%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
EL + Y+ +FE A H + +P + +++++F+ + D+ I+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 312 ADFKLIAKALQRIGNCYKKME--------------------------------------- 332
A+A +GN YK+
Sbjct: 64 PLL---AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 333 ---DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF 389
+ + + + +E+ K P A G
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 390 KNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449
G+ A+ + +A+ +P+ Y N + FD + L L P
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 450 IRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
+ AID Y +A+EL +A
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.3 bits (194), Expect = 2e-16
Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 29/216 (13%)
Query: 267 LAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGN 326
A Y KA+E P +N+ V+ + E I + + + +F A +GN
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---LDAYINLGN 211
Query: 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGN 386
K+ + A + +++S + P A
Sbjct: 212 VLKEARIFDRAVAAYLRALS--------------------------LSPNHAVVHGNLAC 245
Query: 387 ELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL 446
++ G A+ Y AI P P Y N A + + T L+L P
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 447 KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
I + +A+ Y KALE+ A A
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (175), Expect = 4e-14
Identities = 54/418 (12%), Positives = 107/418 (25%), Gaps = 67/418 (16%)
Query: 11 VSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEK 70
+L + Q + + AIK +
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----------------------------- 63
Query: 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
P + YS G+ G+ +E+I Y L+L P+ + +
Sbjct: 64 -----PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 131 NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTT 190
+ + ++ D + + K +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 191 LSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250
+ G + A +D + A+ L S
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 251 KELGNEA---YKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
GN A Y++ + A+ Y +A+E P N+A E+ + + Y
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEE 367
+ + N ++ + + A + K++
Sbjct: 298 LRLCPTHADSL---NNLANIKREQGNIEEAVRLYRKALE--------------------- 333
Query: 368 EKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL 425
+ P A + L + GK +A+ Y EAI +P YSN ++
Sbjct: 334 -----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 2e-10
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 234 EPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE 293
+ + L A L N ++ N EEA+ Y KA+E P +N+A+V +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 294 RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333
+ + + + Y + I F A A +GN K+M+D
Sbjct: 352 QGKLQEALMHYKEAIRISPTF---ADAYSNMGNTLKEMQD 388
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 4e-21
Identities = 64/127 (50%), Positives = 90/127 (70%), Gaps = 4/127 (3%)
Query: 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQY 304
+ A KEKELGN+AYKKK+F+ AL HY+KA E DPT++T+ N AAVYFE+ +Y++C E
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 305 IQKIE----NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEM 360
+ IE NR D++ IAKA RIGN Y K E +K+A ++ KS++EHRTP++ +
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
Query: 361 EKKIKEE 367
EK +KE+
Sbjct: 122 EKILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 2e-12
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+A + KE GN+ +K + A+K Y +A +P + Y +N+AA Y + ++ + CE
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 437 TCLKLDPKFL-------KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+++ + K + R G ++ AI Y K+L + ++ +Q
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
K+ GN A + +F A++ Y +A +LD TN +N++A + ++G+Y K E EK I
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 74 LKPDWPKGY-------SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+ + + Y +R G++ +YK++I Y + L + +K+
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 1e-18
Identities = 24/303 (7%), Positives = 85/303 (28%), Gaps = 9/303 (2%)
Query: 265 EALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK-----IENRADFKLIAK 319
++ + +A + A V+ R+ ++ + ++ + + L
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63
Query: 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAE 379
A + + KN + + + + + ++E +D
Sbjct: 64 AFKNQITTLQGQA--KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Query: 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCL 439
++ + G K + VK + + + +
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAA 179
Query: 440 KLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEE 499
+L P + + + + I Y +++ + A ++ + +E
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE 239
Query: 500 VRKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKLVNSGLIVLAF 559
V+ + ++ ++ + + ++ + + + + L+ +
Sbjct: 240 VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTV 299
Query: 560 IFL 562
I L
Sbjct: 300 INL 302
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 2e-09
Identities = 11/137 (8%), Positives = 35/137 (25%), Gaps = 2/137 (1%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
G + + + ++ S + + +A
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQ 180
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRG 133
L P + Y++ S G + +I Y + + ++ ++ + +
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Query: 134 DPFANLFSDPNIFVQLQ 150
+ F++
Sbjct: 241 KTKWGVSDFIKAFIKFH 257
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 8e-08
Identities = 9/94 (9%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
LG + K+ + + + + + ++ + R + Q Y +
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVP 183
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS 346
+ ++ D Y+ +S++
Sbjct: 184 SN---GQPYNQLAILASSKGDHLTTIFYYCRSIA 214
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 4e-06
Identities = 37/310 (11%), Positives = 92/310 (29%), Gaps = 44/310 (14%)
Query: 63 KALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV 122
++ + + LK D + ++ Y++ L D K+ +D+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60
Query: 123 RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD--PSYVQMIKEIQKDPSLMTT 180
N N+ + + ++ FL Y Q+++E+ ++
Sbjct: 61 WNHAFK--NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--- 115
Query: 181 KLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNL 240
D S L G ++ + S
Sbjct: 116 ---DLPCRVKSSQL---------GIISNKQTHTSAIVKPQSSSCSYICQHCLVH------ 157
Query: 241 TDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQC 300
LG+ A + +A ++Y A + P++ N +A + + ++
Sbjct: 158 ------------LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
Query: 301 IEQYIQKIENRADFKL----IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTL 356
I Y + I + F + KAL + +++ + + + H +
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265
Query: 357 ISEMEKKIKE 366
+ ++ ++
Sbjct: 266 LEKLSPLREK 275
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 7e-06
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 15/138 (10%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDG-TNHILFSNRSAAFAKE--GNYEKALEDAEKTIS 73
K L + F I K N + F + G Y + L++ +
Sbjct: 55 KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 114
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN------------EQMKEAIKD 121
+ S+ G + + + Q +A
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESY 174
Query: 122 VRNQEMNDMNRGDPFANL 139
R+ + G P+ L
Sbjct: 175 YRHAAQLVPSNGQPYNQL 192
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 8e-04
Identities = 8/93 (8%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 28 IEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87
+++ + +A L + + + + + ++ +K
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYA--LDKKVE 57
Query: 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIK 120
+ +K I+T + K N + +
Sbjct: 58 QDLWNHAFKNQITTLQGQAKNRANPNRSEVQAN 90
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.6 bits (182), Expect = 5e-16
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 3/175 (1%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
A+E KE+GN LF KY +A Y AI RNP YY+NRA CY K+ + L DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNP 497
L+LD + +K G+ M+ +AI ++A L ++ ++
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 498 EEV---RKRAMGDPEVQQILRDPAMRLILEQMQNDPRALSDHLKNPEIASKIQKL 549
+R + E+ L +++ R H + I ++ +
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.9 bits (175), Expect = 5e-15
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 6/183 (3%)
Query: 246 SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYI 305
SA++ KE GN + + + EA A Y +A+ +P + N A Y + ++ +Q +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 306 QKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS---EHRTPEIRTLISEMEK 362
+ +E KA +G C +ME + A +++ S E R + S +
Sbjct: 63 RALELDGQSV---KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 363 KIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACY 422
K+ + E + ++E + DD + +A
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179
Query: 423 TKL 425
K
Sbjct: 180 AKH 182
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.6 bits (156), Expect = 2e-12
Identities = 23/101 (22%), Positives = 40/101 (39%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK++GN + EA Y AI + + ++NR+ + K E+AL D + +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
L K + G + Y E+I+ + L
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 35/267 (13%), Positives = 82/267 (30%), Gaps = 22/267 (8%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
E G ++ + A+ + AV+ DP + + E ++ I + +E +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 312 ADFKLIAKALQRIGNCY--------------KKMEDWKNAKVYFEKSMSEHRTPEIRTLI 357
D + AL + + + E+ + ++
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 358 SEMEKKIKEEEKKAY--------IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNP 409
+ E K + + G +G+Y AV +T A++ P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 410 DDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+D ++ A + + L+L P +++ G + +A++ +
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 470 EKALELDASNAEAVEGYRQCSIAVSSN 496
+AL + + S + S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWST 290
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 7e-10
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 3/129 (2%)
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
+K + EE+ D + E G + G +AV + A+ ++P + +
Sbjct: 5 DKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
+ L + CL+L P + Q +A + L + A
Sbjct: 62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121
Query: 481 EAVEGYRQC 489
V +
Sbjct: 122 HLVTPAEEG 130
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 9e-09
Identities = 35/328 (10%), Positives = 82/328 (25%), Gaps = 29/328 (8%)
Query: 32 EAYSEAIKLDGTN----HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87
Y + + + N H +EG+ A+ E + P + + G+
Sbjct: 2 ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61
Query: 88 ALSYLGRYKESISTYEEGLK-LDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 146
+ + +IS L+ N + N+ + L P
Sbjct: 62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121
Query: 147 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDG 206
+ +++ + D + K + + ++ +G
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181
Query: 207 DAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEA 266
+ D A S P + EEA
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG----------------ATLANGNQSEEA 225
Query: 267 LAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIE--------NRADFKLIA 318
+A Y +A+E P I + N+ + + +E +++ + +
Sbjct: 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285
Query: 319 KALQRIGNCYKKMEDWKNAKVYFEKSMS 346
+ + + +S
Sbjct: 286 NIWSTLRLALSMLGQSDAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 28/276 (10%), Positives = 80/276 (28%), Gaps = 15/276 (5%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
++G LQ + A+ + A++ D + + A+ A+ + + LK
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDP 135
PD + + +++ + L+ P + ++ ++
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK--R 141
Query: 136 FANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLL 195
++F++++ L S ++ ++ + T ++ +
Sbjct: 142 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 196 GVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGN 255
N A + + ++ + L + + LG
Sbjct: 202 RPNDYLLWNKLGATLANGNQS-------------EEAVAAYRRALELQPGYIRSRYNLGI 248
Query: 256 EAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVY 291
EA+ H+ +A+ + A+
Sbjct: 249 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 16/113 (14%), Positives = 49/113 (43%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
G + + +A++ ++ A+ + +++L++ A A E+A+ + + L+P
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDM 130
+ + G + LG ++E++ + E L + + + + + +
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (165), Expect = 1e-14
Identities = 36/113 (31%), Positives = 60/113 (53%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+ E KE+GN+ G DA++ Y+EAI +P + YSNR+A Y K + +D
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQC 489
+ L P + KG+ RK L+ + + +A YE+ L+ +A+N + EG +
Sbjct: 62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 2e-11
Identities = 65/114 (57%), Positives = 89/114 (78%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAE 69
+V+ LK+KGN AL N +A++ YSEAIKLD NH+L+SNRSAA+AK+G+Y+KA ED
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61
Query: 70 KTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
KT+ LKPDW KGYSRK +AL +L R++E+ TYEEGLK + NN Q+KE ++++
Sbjct: 62 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 4e-08
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
+ KE GN+A N ++AL Y++A++ DP + +N +A Y ++ +Y + E +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKK 363
++ + D+ R + + ++ AK +E+ + E P+++ + ME +
Sbjct: 63 TVDLKPDWGKGY---SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.6 bits (169), Expect = 2e-13
Identities = 19/238 (7%), Positives = 58/238 (24%), Gaps = 4/238 (1%)
Query: 248 KKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQK 307
+ + + + L + +P ++ + E + E +
Sbjct: 74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133
Query: 308 IENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTP----EIRTLISEMEKK 363
AD + R + + + ++ + + R+ +
Sbjct: 134 RFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193
Query: 364 IKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYT 423
+ + + + E F + Y + + T
Sbjct: 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKST 253
Query: 424 KLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
L + K+ + + L I + L + + + + + +D A
Sbjct: 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.1 bits (139), Expect = 8e-10
Identities = 15/183 (8%), Positives = 48/183 (26%), Gaps = 1/183 (0%)
Query: 242 DEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCI 301
DE+ + A E LA + + + ++ + + + + +
Sbjct: 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDW-KNAKVYFEKSMSEHRTPEIRTLISEM 360
Q + + + + + E + E T++
Sbjct: 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE 258
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAA 420
+ KE ++ + L + ++ ++ +P Y + +
Sbjct: 259 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318
Query: 421 CYT 423
+
Sbjct: 319 KFL 321
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 9/97 (9%), Positives = 25/97 (25%)
Query: 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK 75
+ A + ++ Y + + ++ ++ ++
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272
Query: 76 PDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
AL L KE++ + +DP
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.7 bits (86), Expect = 0.003
Identities = 28/291 (9%), Positives = 71/291 (24%), Gaps = 14/291 (4%)
Query: 56 AKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYL----------GRYKESISTYEEG 105
E LE + + PD+ ++ + L +L K + E
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 99
Query: 106 LKLDPNNEQMK-EAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY 164
L+++P + + + R F + + D R
Sbjct: 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 159
Query: 165 VQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAP 224
+ + + G E + + + A
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219
Query: 225 SPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ 284
P + A + L + + ++ ++ E+ + + +
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIE---NRADFKLIAKALQRIGNCYKKME 332
+ + ++ + RA + ++ + N KME
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.3 bits (85), Expect = 0.003
Identities = 6/73 (8%), Positives = 18/73 (24%)
Query: 17 KGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKP 76
+ + +E+ + E + + A ++ L+ ++ P
Sbjct: 248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307
Query: 77 DWPKGYSRKGSAL 89
S
Sbjct: 308 MRAAYLDDLRSKF 320
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 37/313 (11%), Positives = 90/313 (28%), Gaps = 52/313 (16%)
Query: 218 PSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD 277
P P+ P + + +++ D R+ + E E A A+E +
Sbjct: 23 PVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDE---------RSERAFKLTRDAIELN 73
Query: 278 PTDITFQNNIAAVYFE-RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKN 336
+ T + + +K+ + + IE + + + + D
Sbjct: 74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---QVWHHRRVLVEWLRDPSQ 130
Query: 337 AKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYAD 396
+ + D + R + + + +
Sbjct: 131 ELEFIADIL--------------------------NQDAKNYHAWQHRQWVIQEFKLWDN 164
Query: 397 AVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETC------LKLDPKFLKGWI 450
++ + + + + ++ R + ++ +KL P W
Sbjct: 165 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 224
Query: 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEA------VEGYRQCSIAVSSNPEEVRKRA 504
ILQ + SK + + L+L S++ V+ Y N E++ +A
Sbjct: 225 YLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283
Query: 505 MGDPEVQQILRDP 517
+ E+ +D
Sbjct: 284 LELCEILAKEKDT 296
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 37 AIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR-Y 95
I ++ A ++ E+A + I L + + L L +
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 96 KESISTYEEGLKLDPNNEQM 115
E ++ ++ P N Q+
Sbjct: 95 HEEMNYITAIIEEQPKNYQV 114
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEG-NYEKALEDAEKTISLKPDWPKGYSRKGS 87
A + +AI+L+ N+ ++ R + + + I +P + + +
Sbjct: 61 RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 120
Query: 88 ALSYLGRYKESISTYEEGLKLDPNNEQM 115
+ +L + + + L D N
Sbjct: 121 LVEWLRDPSQELEFIADILNQDAKNYHA 148
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.003
Identities = 10/75 (13%), Positives = 28/75 (37%)
Query: 38 IKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKE 97
+ LD +++L+ +R+ + + + I + Y + L R +
Sbjct: 2 VSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSER 61
Query: 98 SISTYEEGLKLDPNN 112
+ + ++L+ N
Sbjct: 62 AFKLTRDAIELNAAN 76
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 65.8 bits (160), Expect = 1e-12
Identities = 22/121 (18%), Positives = 42/121 (34%)
Query: 384 RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443
+ G+ A++ EAI +P D S+ F+ + +KL P
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 444 KFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRKR 503
++L G + +++ Q + A L + VS + E+V +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121
Query: 504 A 504
A
Sbjct: 122 A 122
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 59.7 bits (144), Expect = 2e-10
Identities = 23/96 (23%), Positives = 38/96 (39%)
Query: 18 GNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77
AL +A+E EAIK + L S+ +G++E+A E ++I L P+
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 78 WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNE 113
+ G S+ + K+ L N E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEE 98
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 56.2 bits (135), Expect = 2e-09
Identities = 22/235 (9%), Positives = 70/235 (29%), Gaps = 35/235 (14%)
Query: 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD 313
A + ++AL +A++ P D + +++ + ++++ EQ +Q I+ +
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 314 FKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYI 373
+ A L+ + + +D+ + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDF-----------------------------AQGAATAKVL 93
Query: 374 DPVKAEEAKE-RGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
+ N + Y + + + ++ + ++ + D L
Sbjct: 94 GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS--FSDVRDIDDRL 151
Query: 433 KDCETCLKLDPKFLKGWIRKGKILQ-GMQQQSKAIDAYEKALELDASNAEAVEGY 486
+ + I ++ + +++ + +E D EG+
Sbjct: 152 GGYIELFSTAGNYF--LVPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGH 204
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 49.7 bits (118), Expect = 3e-07
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 57 KEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMK 116
EG ++ALE + I P S L G ++ + + +KL P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 117 EAIKDV 122
++ +
Sbjct: 68 SQLRHL 73
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 44.6 bits (105), Expect = 1e-05
Identities = 13/116 (11%), Positives = 29/116 (25%), Gaps = 1/116 (0%)
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGL 432
P A L +G + A ++ ++I P+ S A
Sbjct: 25 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84
Query: 433 KD-CETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYR 487
+ + + + L + + Q + + + EL
Sbjct: 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.5 bits (89), Expect = 0.001
Identities = 7/91 (7%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
+FE A ++++ P + + + + + +
Sbjct: 36 FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEK 343
+ +L + N +D++ +
Sbjct: 96 NEELTKSLVS--FNLSMVSQDYEQVSELALQ 124
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.4 bits (145), Expect = 2e-11
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAIN---------------RNPDDPKYYSNRAAC 421
+A KE+G FK GKY AV +Y + ++ + N A C
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
Y KL + ++ C+ L LD KG R+G+ M + A +EK LE++ N
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 482 AVEGYRQCSIAVSSNPEEVRK 502
A C + E R+
Sbjct: 134 ARLQIFMCQKKAKEHNERDRR 154
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 49.2 bits (116), Expect = 2e-07
Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKL---------------DGTNHILFSNRSAA 54
+ +++K+KG + +++A+ Y + + + F N +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
+ K Y KA+E +K + L KG R+G A + ++ + +E+ L+++P N+
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 115 MKEAIKDVRNQ 125
+ I + +
Sbjct: 134 ARLQIFMCQKK 144
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 47.3 bits (111), Expect = 7e-07
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 236 EDKNLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEF---------------DP 278
E + +++ A KE G +K + +A+ Y K V + +
Sbjct: 2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 61
Query: 279 TDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAK 338
+ N+A Y + +EY + +E + + + K L R G M ++++AK
Sbjct: 62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAK 118
Query: 339 VYFEKSMS-EHRTPEIRTLISEMEKKIKEEEKKA 371
FEK + + R I +KK KE ++
Sbjct: 119 GDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 37.6 bits (86), Expect = 0.001
Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 11/148 (7%)
Query: 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK 377
A ++ G Y K + A + + K +S + E++ +
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-----------EMEYGLSEKESKASESFL 63
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
K +Y AV+ +A+ + + K R + F+ D E
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 438 CLKLDPKFLKGWIRKGKILQGMQQQSKA 465
L+++P+ ++ + ++ ++
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKEHNER 151
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 56.6 bits (135), Expect = 3e-10
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 16/129 (12%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKY----------------YSNRAA 420
A + KE GNE FK + +A+ +Y EA++ ++ N A
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 421 CYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
CY K + + LK+D +K + G +A + KA L+ +N
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 481 EAVEGYRQC 489
+ Y C
Sbjct: 136 DIRNSYELC 144
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 47.7 bits (112), Expect = 4e-07
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 22/156 (14%)
Query: 233 AEPEDKNLTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD---------- 280
A+ + TDE++ SA KE GNE +KK EA+ Y +A++F
Sbjct: 1 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 60
Query: 281 ------ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDW 334
I+ N+A Y + K+Y + I+ + ++ + ++G
Sbjct: 61 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL---YKLGVANMYFGFL 117
Query: 335 KNAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEEEK 369
+ AK K+ S +IR K+KE K
Sbjct: 118 EEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 44.6 bits (104), Expect = 5e-06
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 14 LKDKGNAALQANNFIEAIEAYSE----------------AIKLDGTNHILFSNRSAAFAK 57
+K++GN + N EAI Y E K N + + K
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 79
Query: 58 EGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117
+Y KA++ A K + + + K + G A Y G +E+ + L+PNN ++
Sbjct: 80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139
Query: 118 AIKDVRNQ 125
+ + N+
Sbjct: 140 SYELCVNK 147
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 3e-10
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINR----------------NPDDPKYYSNRAAC 421
+E+ K GN FK+ + A+K+YT+ + P N AC
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
K++ + + C L++DP K R+ + QG+++ +A+ +KA E+ +
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 482 AVEGYRQC 489
+
Sbjct: 147 IQAELLKV 154
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.2 bits (121), Expect = 3e-08
Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 227 PPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKA------------- 273
P + A+ + K++ ++ K +GN +K +N+E A+ Y K
Sbjct: 7 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 66
Query: 274 ---VEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330
+ P ++ NI A + ++ ++ ++ +E R ++
Sbjct: 67 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL---YRRAQGWQG 123
Query: 331 MEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIK---EEEKKAY 372
++++ A +K+ I+ + ++++KIK ++EK AY
Sbjct: 124 LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.9 bits (115), Expect = 2e-07
Identities = 21/141 (14%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEA----------------IKLDGTN 44
++++ ++ LK+ GN ++ N+ AI+ Y++ KL
Sbjct: 17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA 76
Query: 45 HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEE 104
N A K +++ A++ + + + P K R+ L Y ++++ ++
Sbjct: 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 136
Query: 105 GLKLDPNNEQMKEAIKDVRNQ 125
++ P ++ ++ + V+ +
Sbjct: 137 AQEIAPEDKAIQAELLKVKQK 157
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 10/168 (5%)
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEME 361
E +++ LI++ L+ IGN + K ++W+ A + K +
Sbjct: 11 EDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE----------GS 60
Query: 362 KKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421
+ E+ A + PV G K + AV EA+ +P + K RA
Sbjct: 61 RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 120
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAY 469
+ L +D L D + ++ P+ K+ Q ++ Q A
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 59.2 bits (141), Expect = 5e-10
Identities = 32/368 (8%), Positives = 95/368 (25%), Gaps = 18/368 (4%)
Query: 36 EAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-----KGYSRKGSALS 90
+ I+ D + + R+ +GN ++A A+ + P S G L
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQ 150
G S++ ++ ++ ++ A+ + Q +G QL
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW-ETQEKAFQLI 121
Query: 151 LDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEE 210
+ + V++ ++ + + R + +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 211 MDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHY 270
+ + + + K + A
Sbjct: 182 SLARGDLDNARSQLNRLENLLG-----NGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236
Query: 271 NKAVEFDPTD----ITFQNNIAAVYFERKEYDQ---CIEQYIQKIENRADFKLIAKALQR 323
+ + + NIA E++ +E+ + + + + L
Sbjct: 237 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296
Query: 324 IGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKE 383
+ Y + +A+ ++ + + + ++ ++ E +
Sbjct: 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356
Query: 384 RGNELFKN 391
R + +
Sbjct: 357 RAQRILRE 364
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 26/264 (9%), Positives = 58/264 (21%), Gaps = 41/264 (15%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFD------PTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
LG + K +LA + + + + + F + E +
Sbjct: 57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 116
Query: 307 KIE-------------------------NRADFKLIAKALQRIGNCYKKMEDWKNAKVYF 341
+ A + + + + +
Sbjct: 117 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176
Query: 342 EKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
++ S++ + Y + K R G A A
Sbjct: 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236
Query: 402 TEAINRNPDDP----KYYSNRAACYTKLAAFDLGLKDCETCL------KLDPKFLKGWIR 451
+ + N A L F+ E +L + +
Sbjct: 237 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296
Query: 452 KGKILQGMQQQSKAIDAYEKALEL 475
++ ++S A AL+L
Sbjct: 297 LNQLYWQAGRKSDAQRVLLDALKL 320
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 5e-10
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCE 436
+AEE K + N+ FK Y +A+K Y++AI NP + YY NR+ Y + + L D
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 68
Query: 437 TCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496
++LD K++KG+ R+ + + A+ YE +++ + +A Y++C+ V
Sbjct: 69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-- 126
Query: 497 PEEVRKRAMGDPEVQQILRDP 517
++ +RA+ E ++ + D
Sbjct: 127 -QKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 35/110 (31%), Positives = 64/110 (58%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
LK + N +A ++ AI+ YS+AI+L+ +N I + NRS A+ + Y AL DA + I
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123
L + KGY R+ ++ LG+++ ++ YE +K+ P+++ K ++
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 6e-06
Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
A++ K N+ +K K++E A+ Y++A+E +P++ + N + Y + Y + +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 307 KIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIK 365
IE + K R + ++ A +E + + + + E K +K
Sbjct: 70 AIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 126
Query: 366 EEEKKAYI 373
++ + I
Sbjct: 127 QKAFERAI 134
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 7e-10
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 15/143 (10%)
Query: 377 KAEEAKERGNELFKNGKYADAVKEYTEA---------------INRNPDDPKYYSNRAAC 421
++ KERG FK GKY A+ +Y + + N A C
Sbjct: 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 71
Query: 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
+ KL AF ++ C L+LD KG R+G+ + A ++K L+L +N
Sbjct: 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131
Query: 482 AVEGYRQCSIAVSSNPEEVRKRA 504
A C + +K
Sbjct: 132 AKTQLAVCQQRIRRQLAREKKLY 154
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 9e-06
Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 240 LTDEQR--SAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-- 295
+ E++ + KE G +K+ +++AL Y K V + + +F N A +
Sbjct: 4 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63
Query: 296 ----------EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
+ + K L R G + + D++ A+ F+K +
Sbjct: 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123
Query: 346 S-EHRTPEIRTLISEMEKKIKEE---EKKAY---IDPVKAEEAKER 384
+T ++ +++I+ + EKK Y + + EE K +
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 169
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 10 EVSLLKDKGNAALQANNFIEAIEAYSEA---------------IKLDGTNHILFSNRSAA 54
+ +++K++G + + +A+ Y + K N +
Sbjct: 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 71
Query: 55 FAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQ 114
K + A+E K + L + KG SR+G A + ++ + + +++ L+L PNN+
Sbjct: 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 131
Query: 115 MKEAIKDVRNQ 125
K + + +
Sbjct: 132 AKTQLAVCQQR 142
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 1e-09
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 376 VKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDC 435
V+A G + A+ ++ + N YT L K
Sbjct: 3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59
Query: 436 ETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNA 480
+ D + ++G + ++ AI ++AL N
Sbjct: 60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 104
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 9e-09
Identities = 21/202 (10%), Positives = 55/202 (27%), Gaps = 28/202 (13%)
Query: 286 NIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSM 345
N + ++K++ ++ + + + + IG Y +++ A+ F +S+
Sbjct: 10 NEGVLAADKKDWKGALDAFSAVQDPHS------RICFNIGCMYTILKNMTEAEKAFTRSI 63
Query: 346 SEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAI 405
+ + + Y K + A + E + + +
Sbjct: 64 N----------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 113
Query: 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA 465
+ N A Y K + + + + I KA
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID------------KA 161
Query: 466 IDAYEKALELDASNAEAVEGYR 487
++ K + +R
Sbjct: 162 MECVWKQKLYEPVVIPVGRLFR 183
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 6e-08
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTIS 73
L ++G A ++ A++A+S + + N + N +A + ++I+
Sbjct: 8 LWNEGVLAADKKDWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSIN 64
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112
Y ++G +Y +I +E L N
Sbjct: 65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 6e-08
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 17/179 (9%)
Query: 253 LGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRA 312
G A KK+++ AL ++ NI +Y K + + + + I
Sbjct: 11 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 313 DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAY 372
A + G Y + E + A ++++ + R + I +
Sbjct: 68 HLA---VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG----------NQLIDYKILGLQ 114
Query: 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRA-ACYTKLAAFDL 430
E K ++ A ++ A + + ++A C K ++
Sbjct: 115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 8e-06
Identities = 17/132 (12%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 13 LLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTI 72
+ + G N EA +A++ +I D + + R + + Y+ A++D ++ +
Sbjct: 38 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 97
Query: 73 SL----------------KPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL--DPNNEQ 114
K + + +K++ + +P + +
Sbjct: 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 157
Query: 115 MKEAIKDVRNQE 126
+ +A++ V Q+
Sbjct: 158 IDKAMECVWKQK 169
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 55.6 bits (132), Expect = 3e-09
Identities = 26/237 (10%), Positives = 63/237 (26%), Gaps = 14/237 (5%)
Query: 236 EDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK 295
+ LTD++R A+ E G A +++A+ P N + +
Sbjct: 27 ASRALTDDER-AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 85
Query: 296 EYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRT 355
+D E + +E + K A+ + R+
Sbjct: 86 NFDAAYEAFDSVLELDPTYNYAHLNRG---IALYYGGRDKLAQDDLLAFYQDDPNDPFRS 142
Query: 356 LISEMEKKIKEEEKKAYIDPVKAEEAKE----------RGNELFKNGKYADAVKEYTEAI 405
L + ++ +E++ + E++ + + + + T+
Sbjct: 143 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 202
Query: 406 NRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQ 462
+ + Y L D + + + L + Q
Sbjct: 203 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 51.7 bits (122), Expect = 6e-08
Identities = 25/114 (21%), Positives = 48/114 (42%)
Query: 368 EKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA 427
+A D +A+ ERG G A A ++++A+ PD P+ ++ T+
Sbjct: 27 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86
Query: 428 FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481
FD + ++ L+LDP + + +G L + A D + D ++
Sbjct: 87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 140
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 19/238 (7%), Positives = 62/238 (26%), Gaps = 10/238 (4%)
Query: 52 SAAFAKEGNYEKALEDAEKTIS----LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLK 107
+ E L E+ ++ + + +G LG + + + + L
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 108 LDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM 167
+ P+ ++ + + + + + + + R
Sbjct: 66 IRPDMPEVFNYLGI-YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 168 IKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPP 227
++ + L + + E+ D + + +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 184
Query: 228 PAKKPAEPE-----DKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD 280
+++ N + + ++ LG + + A A + AV + +
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.002
Identities = 7/70 (10%), Positives = 17/70 (24%)
Query: 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSR 84
++ L + G+ + A + ++ +
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248
Query: 85 KGSALSYLGR 94
LS LG+
Sbjct: 249 ALLELSLLGQ 258
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (129), Expect = 1e-08
Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 9/204 (4%)
Query: 285 NNIAAVYFERKEYDQCIEQYIQKIENRADFKL---IAKALQRIGNCYKKMEDWKNAKVYF 341
A +Y RKE + + +++ + + C+K + NA
Sbjct: 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100
Query: 342 EKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEY 401
E ++ + + ++ E + D KA + E E + + +
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 402 TEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQ 461
Y + Y+KL K +++KG
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLI------KSSMGNRLSQWSLKDYFLKKGLCQLAATD 214
Query: 462 QSKAIDAYEKALELDASNAEAVEG 485
A ++ D + A++ E
Sbjct: 215 AVAAARTLQEGQSEDPNFADSRES 238
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 23/139 (16%)
Query: 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD------------DPKYYSN 417
K + V A A G+Y +A A+ + D ++
Sbjct: 1 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 60
Query: 418 RAACYTKLAAFDLGLKDCETCLKLDPKFLKG-----------WIRKGKILQGMQQQSKAI 466
A L +FD L + L + + + L G+ + ++A+
Sbjct: 61 LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120
Query: 467 DAYEKALELDASNAEAVEG 485
++K +E+ G
Sbjct: 121 PEFKKVVEMIEERKGETPG 139
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 37.8 bits (86), Expect = 9e-04
Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 23/135 (17%)
Query: 14 LKDKGNAALQANNFIEAIEAYSEAIKLD------------GTNHILFSNRSAAFAKEGNY 61
L A + EA A+++ G + + + A A ++
Sbjct: 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 71
Query: 62 EKALEDAEKTISLKPDWPKGYS-----------RKGSALSYLGRYKESISTYEEGLKLDP 110
++AL A+K + + + AL LGR E++ +++ +++
Sbjct: 72 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131
Query: 111 NNEQMKEAIKDVRNQ 125
+ + +
Sbjct: 132 ERKGETPGKERMMEV 146
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 37.0 bits (84), Expect = 0.002
Identities = 13/122 (10%), Positives = 31/122 (25%), Gaps = 14/122 (11%)
Query: 247 AKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQ------------NNIAAVYFER 294
A ++EA A+ +A+E T + +A
Sbjct: 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68
Query: 295 KEYDQCIEQYIQKIENRADFKLIAK--ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPE 352
+ +D+ + + + + + I Y + E + E
Sbjct: 69 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128
Query: 353 IR 354
+
Sbjct: 129 MI 130
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 1e-06
Identities = 11/119 (9%), Positives = 42/119 (35%), Gaps = 3/119 (2%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIE--QYIQKIE 309
+ NE ++ + + + Q A + D + ++++
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 310 NRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMS-EHRTPEIRTLISEMEKKIKEE 367
+ + + + ++++++ A Y + E + + + L ++K +K++
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 5/102 (4%)
Query: 386 NELFKNGKYADAVKEYTEAINRNPDDPK---YYSNRAACYTKLAAFDLGLKDCETCLKLD 442
NEL K++ Y+ G+ E L
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 443 PK--FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEA 482
K +++ KA+ L+ + N +A
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Query: 19 NAALQANNFIEAIEAYSEAIKLDGTN---HILFSNRSAAFAKEGNYEKALEDAEK--TIS 73
N + + ++ + + + ++ + K + E+
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129
K + L Y++++ L+ +P N Q KE + + D
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 39.5 bits (90), Expect = 6e-04
Identities = 11/55 (20%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306
LG ++YK+K+F +A ++ KA + + + N+ +Y++ + ++ +++
Sbjct: 7 GLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAAS 59
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.9 bits (86), Expect = 9e-04
Identities = 14/142 (9%), Positives = 37/142 (26%), Gaps = 1/142 (0%)
Query: 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENR 311
+ E + FE+ + +P D V E ++ + E
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 312 ADFKL-IAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKK 370
F+ + ++ + + + ++ T + + +
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 371 AYIDPVKAEEAKERGNELFKNG 392
+A + E +K G
Sbjct: 122 YLKSLEMTAKAPQLHAEAYKQG 143
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.003
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCET 437
AE++ E G + Y +A+ + + ++ + L+ D +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 438 CL-------KLDPKFLKGWIRKGKILQGMQQ 461
L +LDP+ + M +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.7 bits (86), Expect = 0.003
Identities = 23/181 (12%), Positives = 59/181 (32%), Gaps = 12/181 (6%)
Query: 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVE-FDPTDITFQNNIAAVYFERKEYDQCI 301
++S+K E G+ K +EA Y +A+ ++ A R +Y++
Sbjct: 60 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 119
Query: 302 EQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHR-TPEIRTLISEM 360
Y + + + + ++ E K+ ++ F+K+ + R + + M
Sbjct: 120 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177
Query: 361 EKKIKEEEKKAYIDPVKAEEAKERGNELF--------KNGKYADAVKEYTEAINRNPDDP 412
E +++ A+ + E + + + + P
Sbjct: 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
Query: 413 K 413
+
Sbjct: 238 E 238
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.88 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.72 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.67 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.66 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.31 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.05 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.02 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.01 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.69 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.21 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.11 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.13 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.34 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 84.58 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-42 Score=333.32 Aligned_cols=387 Identities=16% Similarity=0.179 Sum_probs=323.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhcc
Q psy3014 14 LKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLG 93 (570)
Q Consensus 14 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 93 (570)
++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhh
Q psy3014 94 RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQK 173 (570)
Q Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (570)
++++|+..+..+.+.+|............................ ....... ............
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-----~~~~~~~~~~~~-- 145 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS---------ALQYNPD-----LYCVRSDLGNLL-- 145 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH---------HHHHCTT-----CTHHHHHHHHHH--
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---------ccccccc-----cccccccccccc--
Confidence 999999999999999999988777666665541111000000000 0000000 000000000000
Q ss_pred CchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHH
Q psy3014 174 DPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKEL 253 (570)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 253 (570)
............. ...+...|..+..+..+
T Consensus 146 --------~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~l 175 (388)
T d1w3ba_ 146 --------KALGRLEEAKACY------------------------------------------LKAIETQPNFAVAWSNL 175 (388)
T ss_dssp --------HTTSCHHHHHHHH------------------------------------------HHHHHHCTTCHHHHHHH
T ss_pred --------cccchhhhhHHHH------------------------------------------HHhhccCcchhHHHHhh
Confidence 0000000000000 01112233557788899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
|..+...|++++|...++++++.+|+++.++..+|.++...|++++|+..++++....|.. ...+..+|.++...|+
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH---AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred cccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH---HHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 8899999999999999
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
+++|+..|+++++ .+|+++.++..+|.++...|++++|+..++.++...|.++.
T Consensus 253 ~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 306 (388)
T d1w3ba_ 253 IDLAIDTYRRAIE--------------------------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHHHHHHHHHH--------------------------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch
Confidence 9999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
.+..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++.+++.++.++
T Consensus 307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy3014 494 SS 495 (570)
Q Consensus 494 ~~ 495 (570)
|+
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-35 Score=283.66 Aligned_cols=329 Identities=22% Similarity=0.313 Sum_probs=282.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHh
Q psy3014 4 LQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYS 83 (570)
Q Consensus 4 l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (570)
+...|.++.++..+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+..++..+|.......
T Consensus 26 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 105 (388)
T d1w3ba_ 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999888766655
Q ss_pred HHHHHHhhcc----------------------------------CHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhc
Q psy3014 84 RKGSALSYLG----------------------------------RYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMND 129 (570)
Q Consensus 84 ~la~~~~~~g----------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 129 (570)
..+......+ ....+...+.+.+...|++..++..++.++...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (388)
T d1w3ba_ 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcH
Confidence 5555555444 444555555555555555555555555554431111
Q ss_pred cCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCc
Q psy3014 130 MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAE 209 (570)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (570)
..+.. .+.
T Consensus 186 -----------------------------------~~A~~--------------------~~~----------------- 193 (388)
T d1w3ba_ 186 -----------------------------------WLAIH--------------------HFE----------------- 193 (388)
T ss_dssp -----------------------------------HHHHH--------------------HHH-----------------
T ss_pred -----------------------------------HHHHH--------------------HHH-----------------
Confidence 00000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 210 EMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAA 289 (570)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 289 (570)
..+..+|..+.++..+|.++...|++++|+..+++++..+|.....+..+|.
T Consensus 194 ----------------------------~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 194 ----------------------------KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp ----------------------------HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------------------------HHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 0112233567788999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q psy3014 290 VYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEK 369 (570)
Q Consensus 290 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 369 (570)
++...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..+++++.
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------- 299 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQPHF---PDAYCNLANALKEKGSVAEAEDCYNTALR----------------------- 299 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhc-----------------------
Confidence 9999999999999999999999999 89999999999999999999999999998
Q ss_pred HhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHH
Q psy3014 370 KAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGW 449 (570)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 449 (570)
..|..+..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++
T Consensus 300 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 300 ---LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp ---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred ---cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q psy3014 450 IRKGKILQGMQQ 461 (570)
Q Consensus 450 ~~l~~~~~~~g~ 461 (570)
.++|.+|.++||
T Consensus 377 ~~lg~~~~~~~D 388 (388)
T d1w3ba_ 377 SNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC
Confidence 999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.1e-31 Score=246.20 Aligned_cols=256 Identities=14% Similarity=0.200 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
+....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 34446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK 169 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (570)
...|++++|+..+++++...|...............
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 133 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------------------------------- 133 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------------------
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhh--------------------------------------------
Confidence 999999999999999999999764432111000000
Q ss_pred HHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHH
Q psy3014 170 EIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKK 249 (570)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (570)
.....
T Consensus 134 ---------------------------------------------------------------------------~~~~~ 138 (323)
T d1fcha_ 134 ---------------------------------------------------------------------------AGLGP 138 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------------ccccc
Confidence 00000
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTD--ITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
.......+...+.+.+|+..|.+++..+|+. +.++..+|.++...|++++|+..+++++..+|++ +.++..+|.+
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~ 215 (323)
T d1fcha_ 139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGAT 215 (323)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccccc---ccchhhhhhc
Confidence 0011122334566777888888888877763 5667777777777777777777777777777777 7777777777
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
+...|++++|+..|+++++ .+|+++.+++.+|.++...|++++|+..|++++++
T Consensus 216 ~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 216 LANGNQSEEAVAAYRRALE--------------------------LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHH--------------------------HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777777777777776 66777777777777777777777777777777777
Q ss_pred CCCCHH
Q psy3014 408 NPDDPK 413 (570)
Q Consensus 408 ~p~~~~ 413 (570)
+|++..
T Consensus 270 ~p~~~~ 275 (323)
T d1fcha_ 270 QRKSRG 275 (323)
T ss_dssp HHTC--
T ss_pred CCcChh
Confidence 666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4e-29 Score=233.19 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=214.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHH
Q psy3014 250 EKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYK 329 (570)
Q Consensus 250 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 329 (570)
.+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|++ ...+..+|.++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc---cccccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred HcCCHHHHHHHHHHHhcccCCH-----------------------HHHHHHHHHHHHHHHHHHHhcCChh--hHHHHHHH
Q psy3014 330 KMEDWKNAKVYFEKSMSEHRTP-----------------------EIRTLISEMEKKIKEEEKKAYIDPV--KAEEAKER 384 (570)
Q Consensus 330 ~~~~~~~A~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 384 (570)
..|++++|+..+++++...+.. ......+.+.++...+.+++..+|. .+.++..+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 9999999999999999876651 1234456788899999999988876 46788999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 385 GNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 385 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q psy3014 465 AIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 465 A~~~~~~al~~~p~~~~~~~~l 486 (570)
|+..|+++++++|++..++..+
T Consensus 259 A~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 259 AVEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp HHHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHhCCcChhhhhhh
Confidence 9999999999999988765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-24 Score=200.08 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=207.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcccChhHH
Q psy3014 239 NLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERK-EYDQCIEQYIQKIENRADFKLI 317 (570)
Q Consensus 239 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~ 317 (570)
.+.-.|+..+++..+|.++.+.+.+++|+.+++++++++|++..+|..+|.++...| ++++|+..++++++.+|++
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~--- 111 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--- 111 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---
Confidence 344578999999999999999999999999999999999999999999999999987 5999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHH
Q psy3014 318 AKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADA 397 (570)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 397 (570)
..+|..+|.++..+|++++|+..+++++. .+|.+..+|..+|.++...|++++|
T Consensus 112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~--------------------------~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 112 YQVWHHRRVLVEWLRDPSQELEFIADILN--------------------------QDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred hhHHHHHhHHHHhhccHHHHHHHHhhhhh--------------------------hhhcchHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcC------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy3014 398 VKEYTEAINRNPDDPKYYSNRAACYTKLAA------FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEK 471 (570)
Q Consensus 398 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (570)
+.+|+++++++|.+..+|+++|.++...+. +++|+..+.+++.++|++..+|..+|.++...| ..++...+++
T Consensus 166 l~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~ 244 (315)
T d2h6fa1 166 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQ 244 (315)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHH
T ss_pred HHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHH
Confidence 999999999999999999999999988776 589999999999999999999999999876655 5889999999
Q ss_pred HHhhCCCc--HHHHHHHHHHHHHh
Q psy3014 472 ALELDASN--AEAVEGYRQCSIAV 493 (570)
Q Consensus 472 al~~~p~~--~~~~~~l~~~~~~~ 493 (570)
++++.|+. +.+...++.++...
T Consensus 245 ~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 245 LLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHH
Confidence 99988864 55666677776554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.4e-25 Score=201.19 Aligned_cols=211 Identities=14% Similarity=0.050 Sum_probs=165.8
Q ss_pred HHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKK-NFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 252 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
.+|.++...| ++++|+.+++++++.+|++..+|..+|.++..+|++++|+..+.++++.+|++ ..+|..+|.++..
T Consensus 82 ~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n---~~a~~~~~~~~~~ 158 (315)
T d2h6fa1 82 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQE 158 (315)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc---hHHHHHHHHHHHH
Confidence 3455555555 58999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC------HHHHHHHHHHH
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK------YADAVKEYTEA 404 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~a 404 (570)
.|++++|+.+++++++ .+|.+..+|..+|.++...+. +++|+..+.++
T Consensus 159 ~~~~~~Al~~~~~al~--------------------------~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a 212 (315)
T d2h6fa1 159 FKLWDNELQYVDQLLK--------------------------EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212 (315)
T ss_dssp HTCCTTHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH--------------------------HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHH
Confidence 9999999999999998 888899999999998887776 57899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhC--CCHHHHHHHHHHHH-------
Q psy3014 405 INRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF--LKGWIRKGKILQGM--QQQSKAIDAYEKAL------- 473 (570)
Q Consensus 405 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~al------- 473 (570)
++.+|++..+|+.++.++... ..+++...+++++.+.|+. +.++..++.+|... ++.+.+...+++++
T Consensus 213 l~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~ 291 (315)
T d2h6fa1 213 IKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 291 (315)
T ss_dssp HHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886554 4688888999988887764 45556677766432 33333444444443
Q ss_pred -hhCCCcHHHHHHHHHHHHH
Q psy3014 474 -ELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 474 -~~~p~~~~~~~~l~~~~~~ 492 (570)
++||-....|..+++.+..
T Consensus 292 ~~~DpiR~~yw~~~~~~l~~ 311 (315)
T d2h6fa1 292 KEKDTIRKEYWRYIGRSLQS 311 (315)
T ss_dssp HTTCGGGHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHH
Confidence 3466666666666655443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=6.8e-27 Score=218.53 Aligned_cols=197 Identities=8% Similarity=-0.062 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3014 263 FEEALAHYNKAVEFDPTDITFQ-NNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYF 341 (570)
Q Consensus 263 ~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 341 (570)
+++|+..++++++.+|.+..++ ...|.++...+.+++|+..++++++.+|++ ..+|..+|.++...|++++|...+
T Consensus 125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~---~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---YSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---HHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4455555555555555544443 233444444555555555555555555555 555555555555555555554444
Q ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy3014 342 EKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAAC 421 (570)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 421 (570)
.+++. ..|.....+ ..+...+..++|...+.+++...|.+...+..+|.+
T Consensus 202 ~~~~~--------------------------~~~~~~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~ 251 (334)
T d1dcea1 202 RLPEN--------------------------VLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEK 251 (334)
T ss_dssp SSCHH--------------------------HHHHHHHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHH
T ss_pred HHhHH--------------------------hHHHHHHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 44444 223222222 223344566678888888888888888888888888
Q ss_pred HHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy3014 422 YTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIA 492 (570)
Q Consensus 422 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 492 (570)
+...|++.+|+..+.+++..+|.+..++..+|.++..+|++++|+.+|+++++++|++...|..|+..+..
T Consensus 252 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 252 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 88889999999999999998998888899999999999999999999999999999888888888777664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=7.3e-26 Score=211.47 Aligned_cols=267 Identities=10% Similarity=-0.090 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccC----------HHHHHHHHhchhccCCCChhHHhHHHHHHhhccC
Q psy3014 25 NNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGN----------YEKALEDAEKTISLKPDWPKGYSRKGSALSYLGR 94 (570)
Q Consensus 25 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 94 (570)
+..++|+.++++++..+|++..+|..++.++..++. +++|+.+++++++.+|+++.+|+.+|.++.. .
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~--~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR--L 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--C
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH--h
Confidence 345888889999988899888888888877665443 6788888888888888888888888877652 3
Q ss_pred ----HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHH
Q psy3014 95 ----YKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE 170 (570)
Q Consensus 95 ----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (570)
+++|+..+.++++.+|.+..++.
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~----------------------------------------------------- 147 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWD----------------------------------------------------- 147 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHH-----------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhh-----------------------------------------------------
Confidence 35777788888888777655432
Q ss_pred HhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHH
Q psy3014 171 IQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKE 250 (570)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (570)
T Consensus 148 -------------------------------------------------------------------------------- 147 (334)
T d1dcea1 148 -------------------------------------------------------------------------------- 147 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH
Q psy3014 251 KELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK 330 (570)
Q Consensus 251 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 330 (570)
...|.++...+.+++|+..+++++..+|++..+|..+|.++...|++++|+..+.+++...|.. ...+ ..+..
T Consensus 148 ~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~----~~~~~ 220 (334)
T d1dcea1 148 YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LELV----QNAFF 220 (334)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HHHH----HHHHH
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HHHH----HHHHH
Confidence 2356777778999999999999999999999999999999999999999999999888887776 3333 33455
Q ss_pred cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q psy3014 331 MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPD 410 (570)
Q Consensus 331 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 410 (570)
.+..+++...+.+++. ..|.....+..+|.++...|++.+|+..+.+++..+|.
T Consensus 221 l~~~~~a~~~~~~~l~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 221 TDPNDQSAWFYHRWLL--------------------------GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp HCSSCSHHHHHHHHHH--------------------------SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcchhHHHHHHHHHHH--------------------------hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 6777788888888887 77888888888999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 411 DPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
+..++..+|.++...|++++|+.+|+++++++|.....|..++..+.-.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999888887653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.9e-21 Score=183.65 Aligned_cols=295 Identities=11% Similarity=0.017 Sum_probs=244.8
Q ss_pred CchhhhhHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc-----chhhchhHHHhcccCHHHHHHHHhchhccC
Q psy3014 1 MENLQSLVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH-----ILFSNRSAAFAKEGNYEKALEDAEKTISLK 75 (570)
Q Consensus 1 ~~~l~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 75 (570)
|++++..+..++....+|.+++..|++++|+..|++++...|.+. .++..+|.++...|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 81 (366)
T d1hz4a_ 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999999999999999999864 478889999999999999999999999876
Q ss_pred CCC------hhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHh
Q psy3014 76 PDW------PKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQL 149 (570)
Q Consensus 76 p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (570)
|.. ..++..++.++...|++..|...+.+++.+.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~----------------------------------- 126 (366)
T d1hz4a_ 82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL----------------------------------- 126 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc-----------------------------------
Confidence 542 457888999999999999999999998865321100
Q ss_pred hhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy3014 150 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPA 229 (570)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (570)
T Consensus 127 -------------------------------------------------------------------------------- 126 (366)
T d1hz4a_ 127 -------------------------------------------------------------------------------- 126 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHH
Q psy3014 230 KKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTD-----ITFQNNIAAVYFERKEYDQCIEQY 304 (570)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~ 304 (570)
...+..+..+..+|.++...|+++.|...+.+++...+.. ..++...+.++...+++.++...+
T Consensus 127 -----------~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 195 (366)
T d1hz4a_ 127 -----------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL 195 (366)
T ss_dssp -----------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 0011345566778999999999999999999999876643 567788899999999999999999
Q ss_pred HHHhhccc----ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHH
Q psy3014 305 IQKIENRA----DFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEE 380 (570)
Q Consensus 305 ~~~l~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 380 (570)
.++....+ .......++..++.++...|++++|...+.+++...+. ..+.....
T Consensus 196 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------~~~~~~~~ 253 (366)
T d1hz4a_ 196 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA----------------------NNHFLQGQ 253 (366)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT----------------------TCGGGHHH
T ss_pred HHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc----------------------cchHHHHH
Confidence 98875433 22334677888999999999999999999999885442 34455677
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Q psy3014 381 AKERGNELFKNGKYADAVKEYTEAINR------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDP 443 (570)
Q Consensus 381 ~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 443 (570)
+..+|.++...|++++|...+++++.. .|....++..+|.+|...|++++|+..+++++.+.+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 888999999999999999999999854 344567899999999999999999999999988643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-22 Score=181.59 Aligned_cols=210 Identities=12% Similarity=-0.009 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHH
Q psy3014 243 EQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQ 322 (570)
Q Consensus 243 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 322 (570)
.+..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..|+++++.+|++ +.++.
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 109 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHL 109 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh---hhhHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Q psy3014 323 RIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYT 402 (570)
Q Consensus 323 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 402 (570)
.+|.++...|++++|+..|+++++ .+|.+......++..+...+..+.+.....
T Consensus 110 ~lg~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 110 NRGIALYYGGRDKLAQDDLLAFYQ--------------------------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh--------------------------hccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999999 788888888888888888887766666666
Q ss_pred HHHhcCCCCHHHHHHHHHHH----HHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Q psy3014 403 EAINRNPDDPKYYSNRAACY----TKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDAS 478 (570)
Q Consensus 403 ~al~~~p~~~~~~~~la~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 478 (570)
......+..... .+...+ ...+.++.+...+.......|....+++.+|.++..+|++++|+.+|++++..+|+
T Consensus 164 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 164 HFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred Hhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 665555544321 111111 23344666666667777777888899999999999999999999999999999998
Q ss_pred cHHHH
Q psy3014 479 NAEAV 483 (570)
Q Consensus 479 ~~~~~ 483 (570)
+...+
T Consensus 242 ~~~~~ 246 (259)
T d1xnfa_ 242 NFVEH 246 (259)
T ss_dssp TCHHH
T ss_pred CHHHH
Confidence 75444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.4e-22 Score=181.94 Aligned_cols=228 Identities=14% Similarity=0.080 Sum_probs=157.2
Q ss_pred cCCHHHHHHHHHHHHccCC----CCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHH
Q psy3014 24 ANNFIEAIEAYSEAIKLDG----TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 24 ~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
..+++.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 3456777788888876533 345688888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 179 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
..|+++++++|++..++
T Consensus 92 ~~~~~al~~~p~~~~a~--------------------------------------------------------------- 108 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAH--------------------------------------------------------------- 108 (259)
T ss_dssp HHHHHHHHHCTTCTHHH---------------------------------------------------------------
T ss_pred hhhhHHHHHHhhhhhhH---------------------------------------------------------------
Confidence 99999998888765544
Q ss_pred hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH
Q psy3014 180 TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK 259 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 259 (570)
..+|.++..
T Consensus 109 -----------------------------------------------------------------------~~lg~~~~~ 117 (259)
T d1xnfa_ 109 -----------------------------------------------------------------------LNRGIALYY 117 (259)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 346777777
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHH
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKV 339 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 339 (570)
.|++++|+..|+++++.+|++......++.++...+..+.+...........+...........++. ....+..+.+..
T Consensus 118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 196 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKA 196 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTS-SCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999999998888888888888877777776666655555555544443111111111110 001111222222
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q psy3014 340 YFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDP 412 (570)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 412 (570)
.+..... ..|....+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 197 ~~~~~~~--------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 197 DATDNTS--------------------------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HCCSHHH--------------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHhhh--------------------------cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 2222222 4556666777777777777777777777777777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.3e-21 Score=180.56 Aligned_cols=288 Identities=14% Similarity=0.065 Sum_probs=236.7
Q ss_pred CCcchhhchhHHHhcccCHHHHHHHHhchhccCCCCh-----hHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHH
Q psy3014 43 TNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWP-----KGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKE 117 (570)
Q Consensus 43 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (570)
.++++...+|.+++..|++++|+..+++++...|++. .++..+|.++...|++++|+..|++++++.+.....
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-- 87 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-- 87 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch--
Confidence 3456777789999999999999999999999999863 578889999999999999999999998765432211
Q ss_pred HHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHHHHHHHHhcC
Q psy3014 118 AIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMMTTLSVLLGV 197 (570)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (570)
T Consensus 88 -------------------------------------------------------------------------------- 87 (366)
T d1hz4a_ 88 -------------------------------------------------------------------------------- 87 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy3014 198 NMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD 277 (570)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 277 (570)
+.....+..++.++...|++..|...+.+++...
T Consensus 88 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 121 (366)
T d1hz4a_ 88 ----------------------------------------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121 (366)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1334556678999999999999999999998753
Q ss_pred CC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccCh--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q psy3014 278 PT--------DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADF--KLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSE 347 (570)
Q Consensus 278 p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 347 (570)
+. ....+..+|.++...|+++.+...+.+++...+.. .....++...+..+...+++..+...+.++...
T Consensus 122 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 201 (366)
T d1hz4a_ 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 201 (366)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 21 23567789999999999999999999998665432 223677888899999999999999999888763
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q psy3014 348 HRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD----PKYYSNRAACYT 423 (570)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 423 (570)
.... ....+.....+...|.++...|++++|...+.+++...|.+ ...+.++|.++.
T Consensus 202 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 262 (366)
T d1hz4a_ 202 LGNG-------------------KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 262 (366)
T ss_dssp HTTS-------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHHh-------------------cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 3221 11234456678889999999999999999999999887654 456788999999
Q ss_pred HhcChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Q psy3014 424 KLAAFDLGLKDCETCLKL------DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 424 ~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 477 (570)
..|++++|+..+++++.. .|....++..+|.+|..+|++++|++.+++++++.+
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 263 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999853 455678899999999999999999999999999764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.5e-18 Score=132.71 Aligned_cols=112 Identities=32% Similarity=0.522 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
-+...|..++..|++++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..|++++.++|+++.+|+++|.++..+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
|++++|+..|+++++++|+++.++..++.+..
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.1e-19 Score=136.57 Aligned_cols=114 Identities=57% Similarity=0.926 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
.+..+...|..++..|+|++|+..|+++++.+|+++.+|..+|.+|..+|++++|+..++++++++|+++.+|+.+|.++
T Consensus 2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 123 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 123 (570)
..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999888765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.8e-19 Score=172.38 Aligned_cols=232 Identities=9% Similarity=0.049 Sum_probs=161.0
Q ss_pred HHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhcc
Q psy3014 29 EAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKL 108 (570)
Q Consensus 29 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 108 (570)
+|+++|++|+++.|+.+.++.++|.++...|++++| |++++..+|+...++...+.+. ...+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999876 8889999988776654444333 12355667777666654
Q ss_pred CCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHHhhccCccHH
Q psy3014 109 DPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTTKLKDPRMM 188 (570)
Q Consensus 109 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (570)
.......
T Consensus 79 ~~~~~~~------------------------------------------------------------------------- 85 (497)
T d1ya0a1 79 RANPNRS------------------------------------------------------------------------- 85 (497)
T ss_dssp SSCTTTT-------------------------------------------------------------------------
T ss_pred ccCccHH-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred HHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHccCHHHHHH
Q psy3014 189 TTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYKKKNFEEALA 268 (570)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 268 (570)
......++.+....+.|+.|+.
T Consensus 86 ----------------------------------------------------------~~~~~~~~~l~~a~~~Y~~ai~ 107 (497)
T d1ya0a1 86 ----------------------------------------------------------EVQANLSLFLEAASGFYTQLLQ 107 (497)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0001123445556778999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Q psy3014 269 HYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEH 348 (570)
Q Consensus 269 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 348 (570)
.+.+++.++|.+...+..+|.++...|++++|+..+.+++..+| ..++..+|.++...|++++|+.+|++++.
T Consensus 108 ~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~LG~l~~~~~~~~~A~~~y~~A~~-- 180 (497)
T d1ya0a1 108 ELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-----QHCLVHLGDIARYRNQTSQAESYYRHAAQ-- 180 (497)
T ss_dssp HHTC-------------------------------CCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999987765 45788999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q psy3014 349 RTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAA 427 (570)
Q Consensus 349 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 427 (570)
.+|+++.+++.+|.++...|++.+|+.+|.+++...|..+.++.+++.++.+..+
T Consensus 181 ------------------------l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 181 ------------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp ------------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred ------------------------HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999998876554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=5.1e-17 Score=147.05 Aligned_cols=224 Identities=12% Similarity=0.114 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccC---h
Q psy3014 244 QRSAKKEKELGNEAYKKKNFEEALAHYNKAVEFD------PTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRAD---F 314 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~ 314 (570)
+.-++.|...|.+|...|+|++|+.+|.+++++. +....++..+|.+|...|++++|+..+++++++.+. .
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 4557889999999999999999999999999873 223568899999999999999999999999976443 3
Q ss_pred hHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCC
Q psy3014 315 KLIAKALQRIGNCYKK-MEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGK 393 (570)
Q Consensus 315 ~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (570)
.....++..+|.++.. .|++++|+..|++++...+. ....+....++..+|.++...|+
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~--------------------~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ--------------------DQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh--------------------cCchhhhhhHHHHHHHHHHHcCh
Confidence 3457788899988865 69999999999999873211 01223456778899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHh--C
Q psy3014 394 YADAVKEYTEAINRNPDDP-------KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKG-----WIRKGKILQG--M 459 (570)
Q Consensus 394 ~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~--~ 459 (570)
|++|+..|++++...|..+ ..+...|.++...|++..|...++++++++|..... ...++.++.. .
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 9999999999999887653 467889999999999999999999999999875543 3445555554 4
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy3014 460 QQQSKAIDAYEKALELDASNAEAVEGYR 487 (570)
Q Consensus 460 g~~~~A~~~~~~al~~~p~~~~~~~~l~ 487 (570)
+.+.+|+..|.++.++||-....+..+.
T Consensus 254 e~~~eai~~y~~~~~lD~~~~~~L~~~k 281 (290)
T d1qqea_ 254 EQLSEHCKEFDNFMRLDKWKITILNKIK 281 (290)
T ss_dssp TTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 5799999999998888875555444333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.3e-17 Score=132.71 Aligned_cols=118 Identities=30% Similarity=0.584 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
+..+...|..+++.|+|++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+|..+|.++.
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
.+|++++|+.+|++++.++|+++.++..++.+...++.
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 127 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 127 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888665543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.3e-18 Score=168.13 Aligned_cols=221 Identities=9% Similarity=0.016 Sum_probs=158.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3014 265 EALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKS 344 (570)
Q Consensus 265 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 344 (570)
+|+++|++|+++.|+.+.++.++|.++...|++++| |++++..+|+. +..+...+.+. ...+..++..+++.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~---a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY---ALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH---HHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh---HHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999886 88999999877 44433222222 12355677778777
Q ss_pred hcccCCH-----------HHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 345 MSEHRTP-----------EIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 345 ~~~~~~~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
.+..... .+....+.+..++..+.+....+|.+...+..+|..+...|++++|+..+.+++..+| ..
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~ 153 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QH 153 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HH
Confidence 7654331 1223445667777777777778999999999999999999999999999999998776 46
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy3014 414 YYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAV 493 (570)
Q Consensus 414 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 493 (570)
++.++|.++...|++++|+.+|++|+.++|+++.++..+|.++...|++.+|+.+|.+++..+|..+.++.+|+.++.+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cC
Q psy3014 494 SS 495 (570)
Q Consensus 494 ~~ 495 (570)
.+
T Consensus 234 ~~ 235 (497)
T d1ya0a1 234 LE 235 (497)
T ss_dssp TT
T ss_pred hh
Confidence 75
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.1e-17 Score=140.34 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
++-.++..|..++..|+|++|++.|.++ .|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3456778999999999999999999874 5566889999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhhccCCCc
Q psy3014 90 SYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
..+|++++|+..|++++...+.+
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n 103 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGN 103 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTC
T ss_pred HhhccHHHHHHHHHHHHHhCccC
Confidence 99999999999999999877655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.4e-17 Score=135.76 Aligned_cols=118 Identities=30% Similarity=0.525 Sum_probs=112.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHH
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGS 87 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 87 (570)
-..++.+..+|+.++..|+|++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+|..+|.
T Consensus 7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~ 86 (159)
T d1a17a_ 7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 88 ALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++..+|++++|+..|++++.++|++..++..+..+...
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~ 124 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=9.2e-17 Score=145.37 Aligned_cols=221 Identities=15% Similarity=0.160 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccC------CCChhHHhHHHHHHhhccCHHHHH
Q psy3014 26 NFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLK------PDWPKGYSRKGSALSYLGRYKESI 99 (570)
Q Consensus 26 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~ 99 (570)
+|++|.++|.++ |.+|...|+|++|+++|.+++.+. |....++..+|.+|..+|++++|+
T Consensus 32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 577888777765 789999999999999999999874 234568999999999999999999
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHhhhccCCCccccccCCCchHHHHhhhCCCCCCCCCChHHHHHHHHHhhCchhHH
Q psy3014 100 STYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 179 (570)
Q Consensus 100 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (570)
..|++++++.+.....
T Consensus 98 ~~~~~a~~~~~~~~~~---------------------------------------------------------------- 113 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQF---------------------------------------------------------------- 113 (290)
T ss_dssp HHHHHHHHHHHHTTCH----------------------------------------------------------------
T ss_pred HHHHHhhHHhhhcccc----------------------------------------------------------------
Confidence 9999999875432111
Q ss_pred hhccCccHHHHHHHHhcCcccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHH
Q psy3014 180 TKLKDPRMMTTLSVLLGVNMSSTMGDGDAEEMDVDPQPPSPKKAPSPPPAKKPAEPEDKNLTDEQRSAKKEKELGNEAYK 259 (570)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 259 (570)
.....++..+|.++..
T Consensus 114 ----------------------------------------------------------------~~~~~~~~~l~~~~~~ 129 (290)
T d1qqea_ 114 ----------------------------------------------------------------RRGANFKFELGEILEN 129 (290)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------hhHHHHHHHHHHhHhh
Confidence 1234556678888865
Q ss_pred -ccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh----HHHHHHHHHHHHH
Q psy3014 260 -KKNFEEALAHYNKAVEFDPT------DITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK----LIAKALQRIGNCY 328 (570)
Q Consensus 260 -~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~~~~l~~~~ 328 (570)
.|++++|+.+|++++++.+. ...++..+|.++..+|+|++|+..|++++...+... .....+...|.++
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence 69999999999999987433 245688999999999999999999999998776652 2346678889999
Q ss_pred HHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh
Q psy3014 329 KKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK--NGKYADAVKEYTEAIN 406 (570)
Q Consensus 329 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~ 406 (570)
...|++..|...+++++...|.. .+.........++.++.. .+.+++|+..|.++.+
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~~---------------------~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPNF---------------------ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC------------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHhccHHHHHHHHHHHHHhCCCc---------------------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 99999999999999999843321 000112233344444433 3458888888887766
Q ss_pred cCC
Q psy3014 407 RNP 409 (570)
Q Consensus 407 ~~p 409 (570)
++|
T Consensus 269 lD~ 271 (290)
T d1qqea_ 269 LDK 271 (290)
T ss_dssp CCH
T ss_pred cCH
Confidence 654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=4.5e-16 Score=130.42 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHH
Q psy3014 320 ALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVK 399 (570)
Q Consensus 320 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 399 (570)
.+++.|..+...|+++.|+..|.++ .|.++.+++++|.++...|++++|+.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i-----------------------------~~~~~~~~~nlG~~~~~~g~~~~A~~ 57 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV-----------------------------QDPHSRICFNIGCMYTILKNMTEAEK 57 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----------------------------SSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc-----------------------------CCCCHHHHHHHHHHHHHcCCchhHHH
Confidence 4456799999999999999999764 33456789999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHhCCCHH
Q psy3014 400 EYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKF----------------LKGWIRKGKILQGMQQQS 463 (570)
Q Consensus 400 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~g~~~ 463 (570)
+|+++++++|+++.+|+++|.++.++|++++|+..|++++...|.+ ..+++++|.++..+|+++
T Consensus 58 ~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~ 137 (192)
T d1hh8a_ 58 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137 (192)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999875542 467899999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHH
Q psy3014 464 KAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 464 ~A~~~~~~al~~~p~~~~~~ 483 (570)
+|++.|++++++.|+.....
T Consensus 138 ~A~~~l~~A~~~~~~~~~~~ 157 (192)
T d1hh8a_ 138 KAEEQLALATSMKSEPRHSK 157 (192)
T ss_dssp HHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHhcCCCcchHH
Confidence 99999999999998754433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=1.5e-15 Score=138.61 Aligned_cols=195 Identities=12% Similarity=0.052 Sum_probs=172.9
Q ss_pred HccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCCHHHH
Q psy3014 259 KKKNFEEALAHYNKAVEF-DPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMEDWKNA 337 (570)
Q Consensus 259 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 337 (570)
..+..++|...|+++++. .|.+...|..++.++...|+++.|...|+++++..|.+. ..+|...+......|+.+.|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHcCChHHH
Confidence 445678999999999975 789999999999999999999999999999999988762 45788889999999999999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy3014 338 KVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELF-KNGKYADAVKEYTEAINRNPDDPKYYS 416 (570)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~ 416 (570)
...|++++. ..|.....+...+.... ..|+.+.|..+|++++...|+++.+|.
T Consensus 154 r~i~~~al~--------------------------~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~ 207 (308)
T d2onda1 154 RMIFKKARE--------------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207 (308)
T ss_dssp HHHHHHHHT--------------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999998 77888888888887754 468999999999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH
Q psy3014 417 NRAACYTKLAAFDLGLKDCETCLKLDPKFL----KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAE 481 (570)
Q Consensus 417 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 481 (570)
..+..+...|+++.|...|++++...|.++ ..|..........|+.+.+...++++.+..|+...
T Consensus 208 ~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 999999999999999999999999877543 46777777778889999999999999999998754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1.8e-17 Score=141.69 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=101.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSA 88 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 88 (570)
++++.+...|..++..|+|++|+..|++++.++|+++.+|.++|.||...|++++|+.+|+++++++|+++.+|+.+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCHHHHHHHHHHhhccCCCcH
Q psy3014 89 LSYLGRYKESISTYEEGLKLDPNNE 113 (570)
Q Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~ 113 (570)
|..+|++++|+..|+++++++|++.
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999887543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.7e-14 Score=131.48 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--------------cCHHHHH
Q psy3014 244 QRSAKKEKELGNEAYKKK--------NFEEALAHYNKAVEFDPTDITFQNNIAAVYFER--------------KEYDQCI 301 (570)
Q Consensus 244 ~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~~A~ 301 (570)
+.....|......-...+ ..+.+...|++|+...|.++.+|+..+..+... +..++|.
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 84 (308)
T d2onda1 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHH
Confidence 345556665555433221 356688899999999999999999988766443 3468899
Q ss_pred HHHHHHhhc-ccChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhh-HH
Q psy3014 302 EQYIQKIEN-RADFKLIAKALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVK-AE 379 (570)
Q Consensus 302 ~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 379 (570)
..|+++++. .|.+ ...+...+.++...|+++.|...|++++. ..|.+ ..
T Consensus 85 ~i~~ral~~~~p~~---~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--------------------------~~~~~~~~ 135 (308)
T d2onda1 85 NIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA--------------------------IEDIDPTL 135 (308)
T ss_dssp HHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------SSSSCTHH
T ss_pred HHHHHHHHHcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHH--------------------------HhcCChHH
Confidence 999999975 6776 77899999999999999999999999998 66654 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 380 EAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK-LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 380 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
+|...+......|+++.|...|.++++..|.+...+...|..... .|+.+.|...|++++..+|+++..|..++..+..
T Consensus 136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999887654 5899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcCC
Q psy3014 459 MQQQSKAIDAYEKALELDASNA----EAVEGYRQCSIAVSSN 496 (570)
Q Consensus 459 ~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~ 496 (570)
.|+++.|...|+++++..|.++ .+|..+.......|+.
T Consensus 216 ~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999887554 5888888888888873
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.1e-16 Score=136.55 Aligned_cols=114 Identities=33% Similarity=0.489 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKIL 456 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 456 (570)
++..+...|..++..|+|++|+..|++++..+|+++.+|.++|.+|...|++++|+..|++++.++|+++.+|+++|.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy3014 457 QGMQQQSKAIDAYEKALELDASNAEAVEGYRQCS 490 (570)
Q Consensus 457 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 490 (570)
..+|++++|+.+|+++++++|++...+.......
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999999999999999999987665444333333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.66 E-value=1.5e-15 Score=122.01 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHhcChHHHHHHHHHHHh
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD----------------PKYYSNRAACYTKLAAFDLGLKDCETCLK 440 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 440 (570)
.+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.+|.++|++++|+..+++++.
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 34567788999999999999999999999876532 23678999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 441 LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
++|++..+|+.+|.++..+|++++|+.+|+++++++|+|..+...+..+..++.
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.3e-15 Score=124.79 Aligned_cols=119 Identities=28% Similarity=0.419 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------------PKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
+..+...|..++..|+|++|+..|++++...|.. ..++.++|.||.++|++++|+.++++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 5567789999999999999999999999987653 2467889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
|+++.+++.+|.++..+|++++|+.+|+++++++|+|+.+...++.+...+...
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=9.2e-16 Score=125.74 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=109.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc---------------chhhchhHHHhcccCHHHHHHHHhchhc
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH---------------ILFSNRSAAFAKEGNYEKALEDAEKTIS 73 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 73 (570)
..+..+...|..++..|+|++|+..|++++...|... .++.++|.||+++|++++|+..+++++.
T Consensus 11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 4688899999999999999999999999999987643 4567899999999999999999999999
Q ss_pred cCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 74 LKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 74 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...
T Consensus 91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.9e-16 Score=118.38 Aligned_cols=112 Identities=16% Similarity=0.028 Sum_probs=101.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q psy3014 383 ERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK---LAAFDLGLKDCETCLKLDPKF--LKGWIRKGKILQ 457 (570)
Q Consensus 383 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~ 457 (570)
.++..+...+++++|.+.|++++..+|+++.+++++|.++.+ .+++++|+..|++++..+|.. ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 466778889999999999999999999999999999999986 456678999999999998765 458999999999
Q ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 458 GMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 458 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+|++++|+.+|+++++++|++..+...+..+..++.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999998887765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.64 E-value=1.4e-15 Score=122.14 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=108.6
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------------cchhhchhHHHhcccCHHHHHHHHhc
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN----------------HILFSNRSAAFAKEGNYEKALEDAEK 70 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~ 70 (570)
....+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||.++|++++|+..+++
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~ 92 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 92 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence 34677889999999999999999999999999876543 23677899999999999999999999
Q ss_pred hhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 71 TISLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 71 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.62 E-value=8.6e-15 Score=119.76 Aligned_cols=120 Identities=29% Similarity=0.434 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Q psy3014 377 KAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD---------------PKYYSNRAACYTKLAAFDLGLKDCETCLKL 441 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 441 (570)
.+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||..+|++++|+..+++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 35667889999999999999999999999764432 346788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCC
Q psy3014 442 DPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSN 496 (570)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 496 (570)
+|++..+++++|.++..+|++++|+.+|+++++++|+++.++..++.+...++..
T Consensus 94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999998887753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.61 E-value=5.1e-15 Score=121.52 Aligned_cols=117 Identities=23% Similarity=0.398 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINR----------------NPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 442 (570)
..+...|..++..|+|.+|+..|+++++. +|....++.++|.++.++|++++|+..|+++++++
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~ 107 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 107 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence 34567899999999999999999999864 35566789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcC
Q psy3014 443 PKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSS 495 (570)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 495 (570)
|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+..
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.60 E-value=3.9e-15 Score=121.84 Aligned_cols=118 Identities=20% Similarity=0.393 Sum_probs=108.4
Q ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---------------cchhhchhHHHhcccCHHHHHHHHhchh
Q psy3014 8 VYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN---------------HILFSNRSAAFAKEGNYEKALEDAEKTI 72 (570)
Q Consensus 8 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al 72 (570)
...+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||..+|++++|+..+++++
T Consensus 12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al 91 (168)
T d1kt1a1 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence 4578999999999999999999999999999865543 2457789999999999999999999999
Q ss_pred ccCCCChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 73 SLKPDWPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 73 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888887655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.60 E-value=9.7e-16 Score=115.64 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHHhHHHHHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGYSRKGSAL 89 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 89 (570)
..+..+.+|..+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 15 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 15 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCHHHHHHHHHHhh
Q psy3014 90 SYLGRYKESISTYEEGL 106 (570)
Q Consensus 90 ~~~g~~~~A~~~~~~al 106 (570)
..+|++++|++.+++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-14 Score=112.39 Aligned_cols=113 Identities=24% Similarity=0.395 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCH-------HHHH
Q psy3014 378 AEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFL-------KGWI 450 (570)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 450 (570)
+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|+++ .++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999988764 4677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy3014 451 RKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSI 491 (570)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 491 (570)
.+|.++..++++++|+.+|++++..+|+ +++...+..+..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k 123 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEK 123 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 7888999999999999999999999875 566666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.59 E-value=5e-15 Score=111.64 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG 458 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 458 (570)
..++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy3014 459 MQQQSKAIDAYEKAL 473 (570)
Q Consensus 459 ~g~~~~A~~~~~~al 473 (570)
+|++++|++++++.|
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999986
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.7e-15 Score=114.16 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=99.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCcchhhchhHHHhc---ccCHHHHHHHHhchhccCCCC--hhHHhHHHHHHh
Q psy3014 16 DKGNAALQANNFIEAIEAYSEAIKLDGTNHILFSNRSAAFAK---EGNYEKALEDAEKTISLKPDW--PKGYSRKGSALS 90 (570)
Q Consensus 16 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 90 (570)
.++..+...+++++|.+.|++++..+|+++.+++++|.++++ .+++++|+..|++++..+|+. ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 567788899999999999999999999999999999999986 456678999999999998765 468999999999
Q ss_pred hccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 91 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
.+|++++|+.+|+++++++|++..+...+..+...
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.3e-14 Score=108.92 Aligned_cols=119 Identities=50% Similarity=0.785 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChh----HHHHH
Q psy3014 245 RSAKKEKELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFK----LIAKA 320 (570)
Q Consensus 245 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~ 320 (570)
..+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|+..++++++++|++. ....+
T Consensus 2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999888663 34578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy3014 321 LQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKK 363 (570)
Q Consensus 321 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a 363 (570)
+..+|.++...+++++|+.+|++++...+++++...+...++.
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~~k~ 124 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999987777666555554433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=3.4e-14 Score=116.49 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHH
Q psy3014 319 KALQRIGNCYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAV 398 (570)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 398 (570)
..+...|..+...|++.+|+..|.+++...+ ...+...........|.....+.++|.++.+.|++++|+
T Consensus 28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~----------~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai 97 (169)
T d1ihga1 28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE----------GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV 97 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------hhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence 3445667778888888888888888875321 122222233444577889999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHH
Q psy3014 399 KEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKA 465 (570)
Q Consensus 399 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (570)
..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...++.+........++
T Consensus 98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988776665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.56 E-value=5.2e-12 Score=112.18 Aligned_cols=187 Identities=18% Similarity=0.285 Sum_probs=134.3
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH----c
Q psy3014 260 KKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK----M 331 (570)
Q Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----~ 331 (570)
..++..|..+++.+... .++.+...+|.++.. .++.+.|...++++....+. .+...++..+.. .
T Consensus 51 ~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-----~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 51 EKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-----EGCASLGGIYHDGKVVT 123 (265)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHCSSSC
T ss_pred chhHHHHHHhhcccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh-----hHHHhhcccccCCCccc
Confidence 45677777777776643 366666777766654 35677777777777665443 344555555543 3
Q ss_pred CCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Q psy3014 332 EDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINR 407 (570)
Q Consensus 332 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 407 (570)
.....+...+.+... +.....+..+|.++.. ..+...+..+++.+.+
T Consensus 124 ~~~~~a~~~~~~~~~----------------------------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~- 174 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----------------------------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD- 174 (265)
T ss_dssp CCHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-
T ss_pred chhHHHHHHhhhhhc----------------------------ccccchhhhhhhhhccCCCcccccccchhhhhcccc-
Confidence 345555555555443 4456778889999886 5667788888888875
Q ss_pred CCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCc
Q psy3014 408 NPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQG----MQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 408 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~ 479 (570)
+.++.+.+++|.+|.. ..++++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+++|++|....+.
T Consensus 175 -~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~- 250 (265)
T d1ouva_ 175 -LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK- 250 (265)
T ss_dssp -TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH-
T ss_pred -ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH-
Confidence 4689999999999987 67899999999999887 468899999999986 45899999999999988654
Q ss_pred HHHHHHHH
Q psy3014 480 AEAVEGYR 487 (570)
Q Consensus 480 ~~~~~~l~ 487 (570)
.+...|.
T Consensus 251 -~A~~~l~ 257 (265)
T d1ouva_ 251 -GACDILK 257 (265)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.54 E-value=1.3e-14 Score=114.94 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=84.9
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----------cChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKL----------AAFDLGLKDCETCLKLDPKFLKGWIRKGKILQ 457 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 457 (570)
+.+.+.|++|+..|+++++++|+++.+++++|.++... +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455677777777777777777777777777777643 44578888888888888888888888888887
Q ss_pred hCC-----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy3014 458 GMQ-----------QQSKAIDAYEKALELDASNAEAVEGYRQCSIAVS 494 (570)
Q Consensus 458 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 494 (570)
.+| ++++|+++|+++++++|++..++..|+.+....+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence 765 3789999999999999999999999998876554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=3.1e-12 Score=113.65 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=100.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHH----cC
Q psy3014 261 KNFEEALAHYNKAVEFDPTDITFQNNIAAVYFE----RKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKK----ME 332 (570)
Q Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~ 332 (570)
.+.+.|...++.+.... ...+...++..+.. ......|...+.+.... .+ ...+..+|.++.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--ND---GDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHHHTSSSCC
T ss_pred hhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc--cc---cchhhhhhhhhccCCCccc
Confidence 45667777777776653 34455555555553 34466666666665443 23 5567777777775 34
Q ss_pred CHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC
Q psy3014 333 DWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFK----NGKYADAVKEYTEAINRN 408 (570)
Q Consensus 333 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 408 (570)
+...+..+++.+.+ +.++.+.+.+|.++.. ..++++|+.+|+++.+.
T Consensus 161 ~~~~~~~~~~~a~~----------------------------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~- 211 (265)
T d1ouva_ 161 DLKKALASYDKACD----------------------------LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL- 211 (265)
T ss_dssp CHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-
T ss_pred ccccchhhhhcccc----------------------------ccccccccchhhhcccCcccccchhhhhhhHhhhhcc-
Confidence 55666666666654 3456778888888876 66888889899888776
Q ss_pred CCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCC
Q psy3014 409 PDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPK 444 (570)
Q Consensus 409 p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 444 (570)
+++.+++++|.+|.. ..++++|+++|+++....+.
T Consensus 212 -g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 212 -ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp -TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred -cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 468888888888875 34788899999888877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.45 E-value=2.4e-13 Score=107.40 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3014 355 TLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKN----------GKYADAVKEYTEAINRNPDDPKYYSNRAACYTK 424 (570)
Q Consensus 355 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 424 (570)
..++.+++|+..+++++..+|+++.++..+|.++... +.+++|+..|+++++++|+++.+|+++|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445555555556666669999999999999999854 456899999999999999999999999999988
Q ss_pred hcC-----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHH
Q psy3014 425 LAA-----------FDLGLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSK 464 (570)
Q Consensus 425 ~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (570)
+|+ +++|+++|+++++++|++...+..++.+....+.+.+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 764 7999999999999999999999988888644443333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.9e-12 Score=92.68 Aligned_cols=83 Identities=13% Similarity=-0.047 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy3014 412 PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK-------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVE 484 (570)
Q Consensus 412 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 484 (570)
++-++.+|.++++.|+|++|+.+|++|+++.|. ...++.++|.++.++|++++|+.+|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344566777777777777777777777665433 3567777888888888888888888888888888888888
Q ss_pred HHHHHHHHhc
Q psy3014 485 GYRQCSIAVS 494 (570)
Q Consensus 485 ~l~~~~~~~~ 494 (570)
+++.+...++
T Consensus 85 Nl~~~~~~l~ 94 (95)
T d1tjca_ 85 NLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8877766554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.34 E-value=1.6e-12 Score=104.57 Aligned_cols=98 Identities=15% Similarity=0.267 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-----
Q psy3014 382 KERGNELFKNGKYADAVKEYTEAINRNPDD------------PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK----- 444 (570)
Q Consensus 382 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----- 444 (570)
...|..++..|+|++|+..|++++++.|+. ..+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence 344888999999999999999999987764 357899999999999999999999999987442
Q ss_pred ------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Q psy3014 445 ------FLKGWIRKGKILQGMQQQSKAIDAYEKALELDASN 479 (570)
Q Consensus 445 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 479 (570)
...+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus 93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 24478899999999999999999999999997654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.31 E-value=8.4e-13 Score=106.24 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc------------chhhchhHHHhcccCHHHHHHHHhchhccCCC
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH------------ILFSNRSAAFAKEGNYEKALEDAEKTISLKPD 77 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 77 (570)
.+..++..|..++..|+|++|+..|++++++.|+.+ .+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 344555669999999999999999999999988754 46889999999999999999999999987543
Q ss_pred -----------ChhHHhHHHHHHhhccCHHHHHHHHHHhhccCCCc
Q psy3014 78 -----------WPKGYSRKGSALSYLGRYKESISTYEEGLKLDPNN 112 (570)
Q Consensus 78 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (570)
...+++++|.+|..+|++++|+..|++++++.|..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23478999999999999999999999999986644
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.4e-12 Score=94.33 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-------cchhhchhHHHhcccCHHHHHHHHhchhccCCCChhHH
Q psy3014 10 EVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTN-------HILFSNRSAAFAKEGNYEKALEDAEKTISLKPDWPKGY 82 (570)
Q Consensus 10 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (570)
+++.++.+|.+++..|+|++|+.+|++|+++.|.+ +.++.++|.++.+.|++++|+..++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 46788999999999999999999999999987654 34577788888888888888888888888888888888
Q ss_pred hHHHHHHhhc
Q psy3014 83 SRKGSALSYL 92 (570)
Q Consensus 83 ~~la~~~~~~ 92 (570)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8877665443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.11 E-value=1.6e-10 Score=100.52 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=109.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHHHHHcCC
Q psy3014 254 GNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNCYKKMED 333 (570)
Q Consensus 254 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (570)
+.-.+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++ ..++..++.++...+.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~---~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY---LPGASQLRHLVKAAQA 79 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccc
Confidence 4456678999999999999999999999999999999999999999999999999999999 8888888888776666
Q ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q psy3014 334 WKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDDPK 413 (570)
Q Consensus 334 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 413 (570)
..++...+.+.... ..|.....+...+.++...|++++|...+.++.+..|..+.
T Consensus 80 ~~~a~~~~~~~~~~-------------------------~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 80 RKDFAQGAATAKVL-------------------------GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHTTSCCCEECC-------------------------CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred cHHHHHHhhhhhcc-------------------------cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 65554433332221 35666777778888899999999999999999998887654
Q ss_pred H
Q psy3014 414 Y 414 (570)
Q Consensus 414 ~ 414 (570)
.
T Consensus 135 ~ 135 (264)
T d1zbpa1 135 L 135 (264)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=1.2e-09 Score=88.87 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=95.6
Q ss_pred hHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCc----------------------chhhchhHHHhcccCHHHH
Q psy3014 7 LVYEVSLLKDKGNAALQANNFIEAIEAYSEAIKLDGTNH----------------------ILFSNRSAAFAKEGNYEKA 64 (570)
Q Consensus 7 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~la~~~~~~g~~~~A 64 (570)
.....+.+...|..+...|++++|+..|.+++.+.+... .++..++.++...|++++|
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 345678999999999999999999999999999977542 3567889999999999999
Q ss_pred HHHHhchhccCCCChhHHhHHHHHHhhccCHHHHHHHHHHh-------hccCCCc
Q psy3014 65 LEDAEKTISLKPDWPKGYSRKGSALSYLGRYKESISTYEEG-------LKLDPNN 112 (570)
Q Consensus 65 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~ 112 (570)
+.++++++..+|.+..+|..++.++...|++.+|+..|+++ +.+.|..
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999998 5567753
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=5.4e-09 Score=84.89 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=93.8
Q ss_pred CChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHhcChHH
Q psy3014 373 IDPVKAEEAKERGNELFKNGKYADAVKEYTEAINRNPDD----------------------PKYYSNRAACYTKLAAFDL 430 (570)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~ 430 (570)
.+......+...|......|++++|+..|.+++.+.++. ..++..++.++...|++++
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 344567788899999999999999999999999987643 1467889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------HhhCCC
Q psy3014 431 GLKDCETCLKLDPKFLKGWIRKGKILQGMQQQSKAIDAYEKA-------LELDAS 478 (570)
Q Consensus 431 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------l~~~p~ 478 (570)
|+..+++++..+|.+..+|..++.++...|++.+|+..|+++ +-++|.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998 446665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.01 E-value=2.6e-10 Score=99.08 Aligned_cols=131 Identities=11% Similarity=-0.045 Sum_probs=111.5
Q ss_pred HHHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q psy3014 327 CYKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAIN 406 (570)
Q Consensus 327 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 406 (570)
-....|++++|+..++++++ .+|.++..+..+|.++...|++++|+..|+++++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~--------------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIK--------------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--------------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888888888888888 9999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH
Q psy3014 407 RNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLK-LDPKFLKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAV 483 (570)
Q Consensus 407 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 483 (570)
++|++...+..++.++...+..+++...+.+... ..|.....+...+.++...|++++|...++++.+..|+.+..+
T Consensus 59 l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 59 LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred hCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 9999999999999998888777776655444333 3466667778889999999999999999999999999876654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=3.6e-08 Score=71.88 Aligned_cols=84 Identities=13% Similarity=-0.100 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy3014 411 DPKYYSNRAACYTKLA---AFDLGLKDCETCLKLDPKFL-KGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGY 486 (570)
Q Consensus 411 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 486 (570)
.+.+.++.|+++.+.. +.++|+..++.++..+|.+. +.++.+|..|.++|+|++|..+++++++++|+|..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 3677788888887654 45678888888888887654 6888888888888888888888888888888888887777
Q ss_pred HHHHHHhc
Q psy3014 487 RQCSIAVS 494 (570)
Q Consensus 487 ~~~~~~~~ 494 (570)
..+..++.
T Consensus 114 ~~Ie~~~~ 121 (124)
T d2pqrb1 114 SMVEDKIQ 121 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=1.6e-06 Score=63.11 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy3014 377 KAEEAKERGNELFKNG---KYADAVKEYTEAINRNPDDP-KYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRK 452 (570)
Q Consensus 377 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 452 (570)
...+.+..|+++.+.. +.++|+.+++++++.+|.+. +.++.+|..|+++|+|++|..+++++++++|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 3678899999998765 45789999999999998764 7999999999999999999999999999999999887665
Q ss_pred HHHH
Q psy3014 453 GKIL 456 (570)
Q Consensus 453 ~~~~ 456 (570)
-.+.
T Consensus 114 ~~Ie 117 (124)
T d2pqrb1 114 SMVE 117 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=1.9e-05 Score=60.02 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy3014 379 EEAKERGNELFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLDPKFLKGWIRKGK 454 (570)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 454 (570)
.+.+.++. ....++++|+.+|+++.+. +++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.+|.
T Consensus 26 ~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~ 99 (133)
T d1klxa_ 26 FGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGY 99 (133)
T ss_dssp THHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred hhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHH
Confidence 34445543 3457899999999999875 689999999999986 45789999999999875 57889999999
Q ss_pred HHHh----CCCHHHHHHHHHHHHhhCC
Q psy3014 455 ILQG----MQQQSKAIDAYEKALELDA 477 (570)
Q Consensus 455 ~~~~----~g~~~~A~~~~~~al~~~p 477 (570)
+|.. ..++.+|+.+|++|.+...
T Consensus 100 ~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 100 KQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9987 5699999999999998754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=3.5e-05 Score=58.58 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcChHHHHHHHHHHHhcC
Q psy3014 377 KAEEAKERGNELFK----NGKYADAVKEYTEAINRNPDDPKYYSNRAACYTK----LAAFDLGLKDCETCLKLD 442 (570)
Q Consensus 377 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 442 (570)
++.+.+.+|.+|.. ..++.+|+.+|+++.+. .++.+.+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 34455555555543 34566666666666553 356666666666655 345666666666666543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.046 Score=47.73 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAVYFERKEYDQCIEQYIQ 306 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 306 (570)
.....+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.++.
T Consensus 104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 35566677889999999999998888888888888888776543 4444444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.072 Score=49.19 Aligned_cols=112 Identities=4% Similarity=-0.099 Sum_probs=70.5
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCC-----------------------
Q psy3014 388 LFKNGKYADAVKEYTEAINRNPDDPKYYSNRAACYTKLAAFDLGLKDCETCLKLDPK----------------------- 444 (570)
Q Consensus 388 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------------------- 444 (570)
.+..+++..+...+...-......+...+.+|..+...|+.+.|...|..+... ++
T Consensus 295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~ 373 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQ 373 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCc
Confidence 344566766666665443222234556677777777777777777777765432 11
Q ss_pred ---C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcCCHHHHHH
Q psy3014 445 ---F---LKGWIRKGKILQGMQQQSKAIDAYEKALELDASNAEAVEGYRQCSIAVSSNPEEVRK 502 (570)
Q Consensus 445 ---~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~e~~~~ 502 (570)
. ...-+..+..+...|+...|...+..++..- ++.-...++.+..+.|....++..
T Consensus 374 ~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence 0 1123356677888899999998888777543 456666788888888876655443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.098 Score=48.25 Aligned_cols=190 Identities=9% Similarity=-0.018 Sum_probs=129.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH----HHHhcCHHHHHHHHHHHhhcccChhHHHHHHHHHHHH
Q psy3014 252 ELGNEAYKKKNFEEALAHYNKAVEFDPTDITFQNNIAAV----YFERKEYDQCIEQYIQKIENRADFKLIAKALQRIGNC 327 (570)
Q Consensus 252 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~----~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~l~~~ 327 (570)
..+..-....+.+.|...+.......+.....+...... ....+..+.+...+........+. ......++.
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~w~~~~- 294 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST---SLIERRVRM- 294 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH---HHHHHHHHH-
T ss_pred HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch---HHHHHHHHH-
Confidence 344445556788889888888777666665444333322 334566777777777766555444 333333333
Q ss_pred HHHcCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q psy3014 328 YKKMEDWKNAKVYFEKSMSEHRTPEIRTLISEMEKKIKEEEKKAYIDPVKAEEAKERGNELFKNGKYADAVKEYTEAINR 407 (570)
Q Consensus 328 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 407 (570)
....+++..+...+..... .....+...+-+|..+...|+.++|...|..+...
T Consensus 295 al~~~~~~~~~~~~~~l~~--------------------------~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPM--------------------------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCT--------------------------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHcCChHHHHHHHHhcCc--------------------------ccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 4556788888887766543 33345667788899999999999999999887542
Q ss_pred C------------------C-------CC---HHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q psy3014 408 N------------------P-------DD---PKYYSNRAACYTKLAAFDLGLKDCETCLKLDPKFLKGWIRKGKILQGM 459 (570)
Q Consensus 408 ~------------------p-------~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 459 (570)
. + .. ...-...+..+...|....|...+..++... ++.-...+|.+..+.
T Consensus 349 ~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~ 426 (450)
T d1qsaa1 349 RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNN 426 (450)
T ss_dssp CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHC
Confidence 1 0 00 0123456788889999999999998887543 466777889999999
Q ss_pred CCHHHHHHHHHHHH
Q psy3014 460 QQQSKAIDAYEKAL 473 (570)
Q Consensus 460 g~~~~A~~~~~~al 473 (570)
|.++.|+....++-
T Consensus 427 g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 427 QWWDLSVQATIAGK 440 (450)
T ss_dssp TCHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHH
Confidence 99999998877763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.34 E-value=0.28 Score=42.57 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=31.7
Q ss_pred hHHHHHHhhccCHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q psy3014 83 SRKGSALSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 125 (570)
Q Consensus 83 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 125 (570)
......|...|.+++.+..++.++...+.+...+..++.++..
T Consensus 103 ~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 103 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 3455666777888888888888887777777777777776654
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.58 E-value=0.93 Score=28.75 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3014 9 YEVSLLKDKGNAALQANNFIEAIEAYSEAI 38 (570)
Q Consensus 9 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 38 (570)
..+..+-..|..+...|.|++||++++++.
T Consensus 6 N~AH~~~RrAer~l~~~rydeAIech~kA~ 35 (83)
T d2crba1 6 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 35 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677778888888888888888877764
|