Psyllid ID: psy3030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAPRL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mvthpntyhasladadnviprqltpeILSAFEGVRFIAQHIkdadkdneivEDWKYVSMVLDRFFLCVFTAACVLGtcgiifqapslydntapidiqmtritqygisspptvaprl
Flexible Loop (DISEMBL)
mvthpntyhasladadnvipRQLTPEILSAFEGVRFIAQHikdadkdneIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRitqygisspptvaprl
Low Complexity Region (SEG)
MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAPRL
Disordered region (IsUnstruct)
*************DADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGI**********
Disordered Region (DISOPRED)
***************************LSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPID***************T*****
Disordered Region (DISEMBL)
MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAPRL
Disordered Region (DISPRO)
********************RQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSP*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAPRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
P25162	519	Acetylcholine receptor su	yes	N/A	0.767	0.171	0.719	3e-33
P09478	567	Acetylcholine receptor su	no	N/A	0.672	0.137	0.576	9e-21
P91766	516	Acetylcholine receptor su	N/A	N/A	0.663	0.149	0.493	6e-18
Q9N587	502	Acetylcholine receptor su	yes	N/A	0.706	0.163	0.457	1e-16
P54247	436	Acetylcholine receptor no	N/A	N/A	0.620	0.165	0.541	1e-16
P26153	470	Neuronal acetylcholine re	yes	N/A	0.534	0.131	0.516	1e-15
P30926	498	Neuronal acetylcholine re	yes	N/A	0.560	0.130	0.537	9e-15
Q8SPU6	496	Neuronal acetylcholine re	yes	N/A	0.568	0.133	0.514	1e-14
P23414	557	Acetylcholine receptor su	N/A	N/A	0.784	0.163	0.410	4e-14
Q8R493	495	Neuronal acetylcholine re	yes	N/A	0.568	0.133	0.485	4e-14

>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 13  ADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAA 72
            D+DNVIPR LTPE+L A   VRFIAQHIKDADKDNEIVEDWK+VSMVLDRFFL +FT +
Sbjct: 412 VDSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLS 471

Query: 73  CVLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
           CV GT  II Q+PSLYD  +PID Q++ I
Sbjct: 472 CVFGTLAIICQSPSLYDTRSPIDRQLSEI 500

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Drosophila melanogaster (taxid: 7227)

>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 56/78 (71%)

Query: 26  EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
           E+    EG RFIAQH+K+ DK   + EDWKYV+MVLDR FL +F  ACV+GT  II QAP
Sbjct: 476 EMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMFLWIFAIACVVGTALIILQAP 535

Query: 86  SLYDNTAPIDIQMTRITQ 103
           SLYD + PIDI  ++I +
Sbjct: 536 SLYDQSQPIDILYSKIAK 553

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query: 25  PEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 84
           PE+  A +G+ +IA   +  ++   + EDWKYV+MVLDR FL +FT A V+G+ GII QA
Sbjct: 427 PELHKAIDGINYIADQTRKEEESTRVKEDWKYVAMVLDRPFLWIFTLAVVVGSAGIILQA 486

Query: 85  PSLYDNTAPIDIQMTRI 101
           P+LYD  APID++++ I
Sbjct: 487 PTLYDERAPIDVRLSEI 503

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Manduca sexta (taxid: 7130)

>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           +++  ++   +PR  +P + SA E V +IA H+K+ + D +++EDWKY+S+V+DR FL  
Sbjct: 417 NSNREESSFTLPRDNSP-VRSAVESVAYIADHLKNEEDDKQVIEDWKYISVVMDRIFLIT 475

Query: 69  FTAACVLGTCGIIFQAPSLYDNT 91
           FT AC  GT  II +APS+YDNT
Sbjct: 476 FTFACAFGTVVIIARAPSIYDNT 498

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|P54247|ACHX_ONCVO Acetylcholine receptor non-alpha chain (Fragment) OS=Onchocerca volvulus PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 51/72 (70%)

Query: 24  TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ 83
           +P ++ AFE V FIAQ +K  D++  I EDWK+V+ VLDR FL +F+ AC LGT  I+FQ
Sbjct: 365 SPHVIKAFENVCFIAQLLKKKDREAMIDEDWKFVARVLDRLFLLLFSIACFLGTILILFQ 424

Query: 84  APSLYDNTAPID 95
           APSLYD    I+
Sbjct: 425 APSLYDTRQAIN 436

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Onchocerca volvulus (taxid: 6282)

>sp|P26153|ACHB4_CHICK Neuronal acetylcholine receptor subunit beta-4 (Fragment) OS=Gallus gallus GN=CHRNB4 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query: 22  QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 81
           + +PE+  A +GV FIA+H+K  D D  ++EDWKYV+MV+DR FL +F   CVLGT G+ 
Sbjct: 397 KFSPEVQEAIDGVSFIAEHMKSDDNDQSVIEDWKYVAMVVDRLFLWIFVLVCVLGTVGLF 456

Query: 82  FQ 83
            Q
Sbjct: 457 LQ 458

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P30926|ACHB4_HUMAN Neuronal acetylcholine receptor subunit beta-4 OS=Homo sapiens GN=CHRNB4 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 26  EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
           ++  A EGV FIAQH+K+ D+D  +VEDWKYV+MV+DR FL VF   CVLGT G+    P
Sbjct: 423 DVQEALEGVSFIAQHMKNDDEDQSVVEDWKYVAMVVDRLFLWVFMFVCVLGTVGLFL--P 480

Query: 86  SLYDNTA 92
            L+   A
Sbjct: 481 PLFQTHA 487

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q8SPU6|ACHB4_BOVIN Neuronal acetylcholine receptor subunit beta-4 OS=Bos taurus GN=CHRNB4 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 26  EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
           ++  A EGV FIAQH+K  D D  ++EDWKYV+MV+DR FL VF   CVLGT G+    P
Sbjct: 427 DVQEALEGVSFIAQHMKSDDLDQSVIEDWKYVAMVVDRLFLWVFVVVCVLGTVGLFL--P 484

Query: 86  SLYDNTAP 93
            L+    P
Sbjct: 485 PLFQTHTP 492

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Bos taurus (taxid: 9913)

>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 10  ASLADADNVIPRQLTP-EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
            SL+D   V  R+  P E+  A   V FI  H++  D+ +   +DW +V+MVLDR FL +
Sbjct: 457 GSLSD---VATRKKYPFELEKAIHNVLFIQNHMQRQDEFDAEDQDWGFVAMVLDRLFLWI 513

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQ 103
           FT A ++GT  I+ +AP+LYD+T PID++++ + Q
Sbjct: 514 FTIASIVGTFAILCEAPALYDDTKPIDMELSSVAQ 548

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Schistocerca gregaria (taxid: 7010)

>sp|Q8R493|ACHB4_MOUSE Neuronal acetylcholine receptor subunit beta-4 OS=Mus musculus GN=Chrnb4 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 2/68 (2%)

Query: 26  EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
           ++  A EGV FIAQH++  D+D  ++EDWK+V+MV+DR FL VF   C+LGT G+    P
Sbjct: 426 DLQEALEGVSFIAQHLESDDRDQSVIEDWKFVAMVVDRLFLWVFVIVCILGTMGLFL--P 483

Query: 86  SLYDNTAP 93
            L+   AP
Sbjct: 484 PLFQIHAP 491

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
375004967	538	nicotinic acetylcholine receptor alpha8	0.801	0.172	0.752	9e-37
2764509	515	nicotinic acetylcholine receptor, alpha2	0.836	0.188	0.721	2e-36
218175578	539	nicotinic acetylcholine receptor alpha 8	0.801	0.172	0.698	4e-35
195547831	535	nicotinic acetylcholine receptor alpha 8	0.784	0.170	0.717	3e-34
118781886	520	AGAP002971-PA [Anopheles gambiae str. PE	0.818	0.182	0.708	5e-34
215274049	531	nicotinic acetylcholine receptor alpha 8	0.913	0.199	0.626	6e-33
289191360	537	nicotinic acetylcholine receptor alpha 8	0.801	0.173	0.666	1e-32
307180997	461	Acetylcholine receptor subunit beta-like	0.931	0.234	0.592	1e-32
350400600	540	PREDICTED: acetylcholine receptor subuni	0.913	0.196	0.603	1e-32
58585100	537	nicotinic acetylcholine receptor alpha8	0.810	0.175	0.648	3e-32

>gi|375004967|gb|AFA28130.1| nicotinic acetylcholine receptor alpha8 subunit [Periplaneta americana]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 82/93 (88%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           H+S+ D+DN +PRQL+P++LSA +GVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFL V
Sbjct: 428 HSSVTDSDNTLPRQLSPDVLSALQGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLWV 487

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
           FT AC+ GTCGIIFQAPSLYD   PID +++ I
Sbjct: 488 FTLACIGGTCGIIFQAPSLYDKRKPIDQELSDI 520

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2764509|emb|CAA04053.1| nicotinic acetylcholine receptor, alpha2 subunit [Locusta migratoria]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 82/97 (84%)

Query: 6   NTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFF 65
           N  H+S+ D+DN +PR L+P+ILSA EGVRFIAQHIKDADKDNE++EDWKYVSMVLDRFF
Sbjct: 400 NQPHSSVTDSDNTLPRNLSPDILSALEGVRFIAQHIKDADKDNEVIEDWKYVSMVLDRFF 459

Query: 66  LCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRIT 102
           L +FT AC+ GTCGIIFQAPSLYD   PID Q + I+
Sbjct: 460 LWIFTLACIAGTCGIIFQAPSLYDKRIPIDQQKSAIS 496

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|218175578|gb|ACK75719.1| nicotinic acetylcholine receptor alpha 8 subunit [Nilaparvata lugens]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 81/93 (87%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           H+S+ D +N +PRQ++P++L+A +GVRFIAQHIKDADKDNE++EDWKY+SMVLDRFFL V
Sbjct: 428 HSSMVDPENTLPRQMSPDVLAALQGVRFIAQHIKDADKDNEVIEDWKYISMVLDRFFLWV 487

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
           FT AC+ GTCGIIFQAPSLYD   PID Q++ I
Sbjct: 488 FTIACIGGTCGIIFQAPSLYDQRIPIDQQLSDI 520

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195547831|gb|ACG49259.1| nicotinic acetylcholine receptor alpha 8 subunit [Liposcelis bostrychophila]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 81/92 (88%), Gaps = 1/92 (1%)

Query: 14  DADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAAC 73
           D++N++PR L+PE+LSA +GVRFIAQHIKDADKDNE++EDWKYVSMVLDRFFL +FT AC
Sbjct: 431 DSENMLPRHLSPEVLSALQGVRFIAQHIKDADKDNEVIEDWKYVSMVLDRFFLWIFTLAC 490

Query: 74  VLGTCGIIFQAPSLYDNTAPIDIQMTRITQYG 105
           + GTCGIIFQAPSLYD   PID +++ I Q+G
Sbjct: 491 IGGTCGIIFQAPSLYDQRIPIDQEISLI-QFG 521

Source: Liposcelis bostrychophila

Species: Liposcelis bostrychophila

Genus: Liposcelis

Family: Liposcelidae

Order: Psocoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118781886|ref|XP_311925.3| AGAP002971-PA [Anopheles gambiae str. PEST] gi|51873093|gb|AAU12512.1| nicotinic acetylcholine receptor subunit alpha 8 [Anopheles gambiae] gi|116129306|gb|EAA08126.4| AGAP002971-PA [Anopheles gambiae str. PEST]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 82/96 (85%), Gaps = 1/96 (1%)

Query: 6   NTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFF 65
           N  H S+ +A+NVIP+QL+PE+LSA + VRFIAQHIKDADKDNEIVEDWK+VSMVLDRFF
Sbjct: 407 NLSHGSV-EAENVIPKQLSPEVLSAIQAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFF 465

Query: 66  LCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
           L VFT +C+ GT GIIFQ+PSLYD  AP+D Q++ I
Sbjct: 466 LWVFTISCIFGTFGIIFQSPSLYDTRAPVDQQLSEI 501

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215274049|gb|ACJ64922.1| nicotinic acetylcholine receptor alpha 8 [Leptinotarsa decemlineata]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 82/107 (76%), Gaps = 1/107 (0%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           H+S+  + N+ P+ L+  +L+AF+GVRFIAQHI+DADKDNEIVEDWK+VSMVLDRFFL V
Sbjct: 423 HSSMTGSSNMTPKMLSENVLAAFQGVRFIAQHIRDADKDNEIVEDWKFVSMVLDRFFLWV 482

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGI-SSPPTVAP 114
           FT AC+ GTCGIIFQAPSLYD   P+D Q++ I    I   PP   P
Sbjct: 483 FTIACIGGTCGIIFQAPSLYDTRIPVDQQLSEIPLNKIFQLPPKQVP 529

Source: Leptinotarsa decemlineata

Species: Leptinotarsa decemlineata

Genus: Leptinotarsa

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289191360|ref|NP_001166022.1| nicotinic acetylcholine receptor alpha 8 subunit precursor [Nasonia vitripennis] gi|267925257|gb|ACY82693.1| nicotinic acetylcholine receptor subunit alpha 8 [Nasonia vitripennis]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 80/93 (86%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           HAS+ D++N +PR LTP+I++A +GVRFIAQHIKDADKDNE++EDWK+V+MVLDRFFL +
Sbjct: 427 HASVTDSENTMPRHLTPDIVTALQGVRFIAQHIKDADKDNEVIEDWKFVAMVLDRFFLWI 486

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
           FT AC++GT GII QAPSLYD   P+D Q++ I
Sbjct: 487 FTLACIIGTAGIICQAPSLYDTREPLDRQVSSI 519

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180997|gb|EFN68771.1| Acetylcholine receptor subunit beta-like 2 [Camponotus floridanus]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 84/108 (77%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           HAS+ D++N +P+ L+P+++SA +GVRFIAQHIKDADKDNE++EDWK+V+MVLDRFFL V
Sbjct: 353 HASVTDSENTMPKHLSPDVISALKGVRFIAQHIKDADKDNEVIEDWKFVAMVLDRFFLWV 412

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAPRL 116
           FT AC+ GT GII QAPSLYD   P+D +++ I+      PP V   L
Sbjct: 413 FTIACIGGTLGIIGQAPSLYDTRHPVDQRLSGISLRNYMHPPNVTFNL 460

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400600|ref|XP_003485894.1| PREDICTED: acetylcholine receptor subunit beta-like 2-like [Bombus impatiens]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 82/106 (77%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           HAS+ D++N +PR L+P+++SA +GVRFIAQHIK+ADKDNE++EDWK+V+MVLDR FL V
Sbjct: 431 HASVTDSENTMPRHLSPDVISALKGVRFIAQHIKNADKDNEVIEDWKFVAMVLDRLFLWV 490

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVAP 114
           FT AC  GT GIIFQAPSLYD   P+D Q++ I+      P   AP
Sbjct: 491 FTLACTGGTLGIIFQAPSLYDTREPVDQQLSGISFRNYMYPNVNAP 536

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58585100|ref|NP_001011575.1| nicotinic acetylcholine receptor alpha8 subunit [Apis mellifera] gi|21397152|gb|AAM51823.1|AF514804_1 neuronal nicotinic acetylcholine receptor alpha-3 [Apis mellifera]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 79/94 (84%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
           HAS+ D++N +PR L+P+++SA +GVRFIAQHIK+ADKDNE++EDWK+V+MVLDR FL V
Sbjct: 429 HASVTDSENTVPRYLSPDVISALKGVRFIAQHIKNADKDNEVIEDWKFVAMVLDRLFLWV 488

Query: 69  FTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRIT 102
           FT AC  GT GIIFQAPSLYD   P+D Q++ I+
Sbjct: 489 FTLACTAGTLGIIFQAPSLYDTREPVDQQLSGIS 522

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0004118	519	nAcRbeta-96A "nicotinic Acetyl	0.758	0.169	0.727	1.6e-30
FB|FBgn0000036	567	nAcRalpha-96Aa "nicotinic Acet	0.853	0.174	0.494	5.6e-20
WB|WBGene00006774	511	unc-38 [Caenorhabditis elegans	0.732	0.166	0.488	1.1e-17
FB|FBgn0015519	795	nAcRalpha-7E "nicotinic Acetyl	0.818	0.119	0.479	2e-17
WB|WBGene00006797	502	unc-63 [Caenorhabditis elegans	0.620	0.143	0.520	1.6e-16
FB|FBgn0037212	568	nAcRalpha-80B "nicotinic Acety	0.732	0.149	0.488	4.2e-15
RGD|2351	495	Chrnb4 "cholinergic receptor,	0.568	0.133	0.485	8.1e-15
UNIPROTKB|P12392	495	Chrnb4 "Neuronal acetylcholine	0.568	0.133	0.485	8.1e-15
UNIPROTKB|F1NWX4	470	CHRNB4 "Neuronal acetylcholine	0.577	0.142	0.507	1.3e-14
UNIPROTKB|P26153	470	CHRNB4 "Neuronal acetylcholine	0.577	0.142	0.507	1.3e-14

FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 64/88 (72%), Positives = 73/88 (82%)

Query:    14 DADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAAC 73
             D+DNVIPR LTPE+L A   VRFIAQHIKDADKDNEIVEDWK+VSMVLDRFFL +FT +C
Sbjct:   413 DSDNVIPRNLTPEVLQALRAVRFIAQHIKDADKDNEIVEDWKFVSMVLDRFFLWLFTLSC 472

Query:    74 VLGTCGIIFQAPSLYDNTAPIDIQMTRI 101
             V GT  II Q+PSLYD  +PID Q++ I
Sbjct:   473 VFGTLAIICQSPSLYDTRSPIDRQLSEI 500

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 49/99 (49%), Positives = 62/99 (62%)

Query:     5 PNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRF 64
             P    A+ AD      +    E+    EG RFIAQH+K+ DK   + EDWKYV+MVLDR 
Sbjct:   455 PAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRM 514

Query:    65 FLCVFTAACVLGTCGIIFQAPSLYDNTAPIDIQMTRITQ 103
             FL +F  ACV+GT  II QAPSLYD + PIDI  ++I +
Sbjct:   515 FLWIFAIACVVGTALIILQAPSLYDQSQPIDILYSKIAK 553

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00006774 unc-38 [Caenorhabditis elegans (taxid:6239)]

 Score = 223 (83.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 42/86 (48%), Positives = 61/86 (70%)

Query:    13 ADADNVIPRQL-TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTA 71
             A  D+ I +   +P ++ AFE + FIA+ +K  D+D++I EDWKYV+MVLDR FL +F+ 
Sbjct:   413 ATIDDTIQKMYYSPPVVKAFENICFIAELLKKKDRDDKIDEDWKYVAMVLDRLFLLIFSI 472

Query:    72 ACVLGTCGIIFQAPSLYDNTAPIDIQ 97
             AC +GT  I+ +AP+LYD   PID+Q
Sbjct:   473 ACFVGTVIILLRAPTLYDTRQPIDLQ 498

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/98 (47%), Positives = 63/98 (64%)

Query:    17 NVIPRQLT-PEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVL 75
             NV  R  T PE+  A +GV +IA   +  ++   + EDWKYV+MVLDR FL +FT A V+
Sbjct:   696 NVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRVKEDWKYVAMVLDRLFLWIFTIAVVV 755

Query:    76 GTCGIIFQAPSLYDNTAPIDIQMTRITQYGISSPPTVA 113
             GT GII QAP+LYD   PIDI+++ I     ++ P VA
Sbjct:   756 GTAGIILQAPTLYDTRMPIDIKLSEIAS--TTAKPNVA 791

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)]

 Score = 212 (79.7 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query:    19 IPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTC 78
             +PR  +P + SA E V +IA H+K+ + D +++EDWKY+S+V+DR FL  FT AC  GT 
Sbjct:   427 LPRDNSP-VRSAVESVAYIADHLKNEEDDKQVIEDWKYISVVMDRIFLITFTFACAFGTV 485

Query:    79 GIIFQAPSLYDNT 91
              II +APS+YDNT
Sbjct:   486 VIIARAPSIYDNT 498

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0006581 "acetylcholine catabolic process" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0034220 "ion transmembrane transport" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=ISS;IMP

GO:0022848 "acetylcholine-gated cation channel activity" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 44/90 (48%), Positives = 57/90 (63%)

Query:    25 PEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 84
             P+I  +   VRFIA+H K  +   ++ EDWKYV+MVLDR FL +FT A V+GT GII QA
Sbjct:   479 PKIHKSCFCVRFIAEHTKMQEDSTKVKEDWKYVAMVLDRLFLWIFTLAVVVGTAGIILQA 538

Query:    85 PSLYDNTAPI----DIQMTRITQYGISSPP 110
             P+LYD+  PI    D+  +  T  G   PP
Sbjct:   539 PTLYDDRIPIIEQKDLDFSG-TSAGRCRPP 567

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|2351 Chrnb4 "cholinergic receptor, nicotinic, beta 4 (neuronal)" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query:    26 EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
             ++  A EGV FIAQH++  D+D  ++EDWK+V+MV+DR FL VF   C+LGT G+    P
Sbjct:   426 DLQEALEGVSFIAQHLESDDRDQSVIEDWKFVAMVVDRLFLWVFVFVCILGTMGLFL--P 483

Query:    86 SLYDNTAP 93
              L+   AP
Sbjct:   484 PLFQIHAP 491

GO:0001508 "regulation of action potential" evidence=IEA;ISO

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;IC

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0005892 "acetylcholine-gated channel complex" evidence=ISO;IDA;TAS

GO:0006939 "smooth muscle contraction" evidence=IEA;ISO

GO:0006940 "regulation of smooth muscle contraction" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0008144 "drug binding" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0035094 "response to nicotine" evidence=ISO

GO:0035095 "behavioral response to nicotine" evidence=IEA;ISO

GO:0042166 "acetylcholine binding" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IDA

GO:0060084 "synaptic transmission involved in micturition" evidence=IEA;ISO

UNIPROTKB|P12392 Chrnb4 "Neuronal acetylcholine receptor subunit beta-4" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query:    26 EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAP 85
             ++  A EGV FIAQH++  D+D  ++EDWK+V+MV+DR FL VF   C+LGT G+    P
Sbjct:   426 DLQEALEGVSFIAQHLESDDRDQSVIEDWKFVAMVVDRLFLWVFVFVCILGTMGLFL--P 483

Query:    86 SLYDNTAP 93
              L+   AP
Sbjct:   484 PLFQIHAP 491

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|F1NWX4 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query:    22 QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 81
             + +PE+  A +GV FIA+H+K  D D  ++EDWKYV+MV+DR FL +F   CVLGT G+ 
Sbjct:   397 KFSPEVQEAIDGVSFIAEHMKSDDNDQSVIEDWKYVAMVVDRLFLWIFVLVCVLGTVGLF 456

Query:    82 FQAPSLYDN 90
              Q P L+ N
Sbjct:   457 LQ-P-LFQN 463

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|P26153 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query:    22 QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII 81
             + +PE+  A +GV FIA+H+K  D D  ++EDWKYV+MV+DR FL +F   CVLGT G+ 
Sbjct:   397 KFSPEVQEAIDGVSFIAEHMKSDDNDQSVIEDWKYVAMVVDRLFLWIFVLVCVLGTVGLF 456

Query:    82 FQAPSLYDN 90
              Q P L+ N
Sbjct:   457 LQ-P-LFQN 463

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P26153	ACHB4_CHICK	No assigned EC number	0.5161	0.5344	0.1319	yes	N/A
P25162	ACH4_DROME	No assigned EC number	0.7191	0.7672	0.1714	yes	N/A
Q8SPU6	ACHB4_BOVIN	No assigned EC number	0.5147	0.5689	0.1330	yes	N/A
P30926	ACHB4_HUMAN	No assigned EC number	0.5373	0.5603	0.1305	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	3e-21

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 83.9 bits (208), Expect = 3e-21
 Identities = 31/72 (43%), Positives = 45/72 (62%)

Query: 9   HASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCV 68
               + +    P +L+PE+  A EGVRFIA+H++  D+ +E+ EDWKYV+MV+DR    +
Sbjct: 156 LPGGSGSGLGSPFRLSPELKKALEGVRFIAEHLRSRDEFDEVKEDWKYVAMVIDRLSRWI 215

Query: 69  FTAACVLGTCGI 80
           F  A VLGT   
Sbjct: 216 FPIAFVLGTLVY 227

This family includes the four transmembrane helices that form the ion channel. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.31
KOG3646|consensus	486		99.22
TIGR00860	459	LIC Cation transporter family protein. selective w	99.17
KOG3645|consensus	449		98.34

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.31  E-value=4.4e-12  Score=89.43  Aligned_cols=61  Identities=41%  Similarity=0.784  Sum_probs=52.3

Q ss_pred             CCccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3030          21 RQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGII   81 (116)
Q Consensus        21 ~~~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~   81 (116)
                      ....+.++++.++++++++|++++++.++.++||+++|+|+||+|+|+|.+++++++++++
T Consensus       177 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~viDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  177 QSLSPSLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMVIDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             TTGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHhhhhcccceeecccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            3455678999999999999999999999999999999999999999999999999988764

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>KOG3646|consensus

Probab=99.22  E-value=3.1e-11  Score=100.85  Aligned_cols=61  Identities=33%  Similarity=0.658  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030          26 EILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY   88 (116)
Q Consensus        26 el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~   88 (116)
                      ++..+.+.++.+.++++++++++++++||||+|||+||+||.+|.++++++  +++..+|++.
T Consensus       425 ~~~~i~~~~~~~~~r~~~~~~~~~~~~dWkFAAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~  485 (486)
T KOG3646|consen  425 ELHLILKELRAILDRMEEDDKEEALQSDWKFAAMVVDRLCLLAFSVFIVMC--GILLSAPHLV  485 (486)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence            567888999999999999999999999999999999999999999998888  8888888764

>TIGR00860 LIC Cation transporter family protein

Probab=99.17  E-value=2.7e-11  Score=101.12  Aligned_cols=58  Identities=26%  Similarity=0.494  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy3030          24 TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIF   82 (116)
Q Consensus        24 ~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~   82 (116)
                      .++++++.+++++| +|++++++.++.++|||++|+|+||+|+|+|.++++++++++++
T Consensus       400 ~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~W~~~a~viDr~~~~~f~~~~~~~~~~~~~  457 (459)
T TIGR00860       400 DLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWM  457 (459)
T ss_pred             CHHHHHHHhhhhHH-HHHHhhhhhhcccchhhhccchhhHHHHHHHHHHHHHhhhhheE
Confidence            46899999999999 99999999999999999999999999999999999999999876

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=98.34  E-value=4.6e-07  Score=75.69  Aligned_cols=48  Identities=58%  Similarity=0.998  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFT   70 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifl   70 (116)
                      ..++++++.+.+++|+++++.++..++..+||+++|+|+||+|||+|+
T Consensus       401 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~w~~va~v~dr~~l~~f~  448 (449)
T KOG3645|consen  401 LSPELRKAIEGVDFIAEHLKSEDNFQEIREDWKYVAMVLDRLLLWIFL  448 (449)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhhheEe
Confidence            667889999999999999999999999999999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
1oed_A	227	Structure Of Acetylcholine Receptor Pore From Elect		2e-12
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		4e-12
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		1e-11
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		4e-09
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		5e-09
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		6e-09
1oed_C	260	Structure Of Acetylcholine Receptor Pore From Elect		2e-04
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		3e-04

>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  
Sbjct: 155 PLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVS 214
Query: 80  I 80
           +
Sbjct: 215 V 215

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)
Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  
Sbjct: 389 PLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVS 448
Query: 80  I 80
           +
Sbjct: 449 V 449

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 24  TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80
           +P   SA EGV++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  +
Sbjct: 302 SPSTHSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSV 358

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL +F   C +GT  
Sbjct: 418 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFS 477
Query: 80  IIFQA 84
           I   A
Sbjct: 478 IFLDA 482

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 24  TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ 83
           +P    A E +++IA+ ++ A + +++ +DW+YV+MV DR FL +F   C +GT  I   
Sbjct: 299 SPNTHEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLD 358
Query: 84  A 84
           A
Sbjct: 359 A 359

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL VF   C +GT  
Sbjct: 178 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFS 237
Query: 80  IIFQA 84
           I   A
Sbjct: 238 IFLDA 242

>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 22  QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80
           QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  I
Sbjct: 190 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFI 248

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 22  QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80
           QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  I
Sbjct: 435 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFI 493

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	2e-19
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-19
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	3e-19
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	4e-19
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	4e-17
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	6e-16
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	2e-15
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	6e-15
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	1e-14
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	3e-14
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	2e-13
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	1e-12

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 80.9 bits (199), Expect = 2e-19
 Identities = 18/75 (24%), Positives = 26/75 (34%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
                PEI S  E   FIA+  K+ +      E+W  +  V+D+    +      LGT  
Sbjct: 405 LANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLA 464

Query: 80  IIFQAPSLYDNTAPI 94
           I            P 
Sbjct: 465 IFLTGHLNQVPEFPF 479

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 81.0 bits (199), Expect = 2e-19
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
             QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  
Sbjct: 433 SDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIF 492

Query: 80  IIFQAPSLYDNTAPIDIQ 97
           I            P +  
Sbjct: 493 IFVMGNFNRPPAKPFEGD 510

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 80.6 bits (198), Expect = 3e-19
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL +F   C +GT  
Sbjct: 418 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFS 477

Query: 80  IIFQAPSLYDNTAP 93
           I   A        P
Sbjct: 478 IFLDASHNVPPDNP 491

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 79.9 bits (197), Expect = 4e-19
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 31  FEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDN 90
            E +++IA+ ++ A + +++ +DW+YV+MV DR FL +F   C +GT  I   A      
Sbjct: 306 VEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPP 365

Query: 91  TAP 93
             P
Sbjct: 366 DNP 368

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 73.0 bits (178), Expect = 4e-17
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 14  DADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAAC 73
           + +     QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   
Sbjct: 182 NENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVM 241

Query: 74  VLGTCGIIFQAP 85
           VLGT  I     
Sbjct: 242 VLGTIFIFVMGN 253

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 70.3 bits (171), Expect = 6e-16
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
                PEI S  E   FIA+  K+ +      E+W  +  V+D+    +      +GT  
Sbjct: 188 LANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLA 247

Query: 80  IIFQAP 85
           I     
Sbjct: 248 IFLTGH 253

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 68.4 bits (166), Expect = 2e-15
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL VF   C +GT  
Sbjct: 178 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFS 237

Query: 80  IIFQAP 85
           I   A 
Sbjct: 238 IFLDAS 243

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 68.1 bits (166), Expect = 6e-15
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 1   MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMV 60
           +     +      +     P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV
Sbjct: 370 IDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMV 429

Query: 61  LDRFFLCVFTAACVLGTCGIIFQA 84
           +D   LCVF   C++GT  +    
Sbjct: 430 IDHILLCVFMLICIIGTVSVFAGR 453

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 34  VRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAP 93
             FIA+  K+ +      E+W  +  V+D+    +      LGT  I       + N  P
Sbjct: 313 CNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTG---HLNQVP 369

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 34  VRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA 84
           V++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  +    
Sbjct: 312 VKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 362

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 62.9 bits (152), Expect = 2e-13
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query: 1   MVTHPNTYHASLADADNVIPRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMV 60
           +     +      +     P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV
Sbjct: 136 IDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMV 195

Query: 61  LDRFFLCVFTAACVLGTCGIIFQA 84
           +D   LCVF   C++GT  +    
Sbjct: 196 IDHILLCVFMLICIIGTVSVFAGR 219

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 31  FEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDN 90
            +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  I         N
Sbjct: 308 IDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG---NFN 364

Query: 91  TAP 93
             P
Sbjct: 365 RPP 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.76
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.74
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.73
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.73
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.69
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.69
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.62
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.57
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.39
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.3
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.25
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.08
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	98.15
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	97.36

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.76  E-value=7.6e-20  Score=141.46  Aligned_cols=69  Identities=33%  Similarity=0.681  Sum_probs=32.0

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCC
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNT   91 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~   91 (116)
                      ..++++++++++++|++|++++|+++++++|||+||||+||+|||+|++++++||++||+++|+.+++.
T Consensus       181 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~~  249 (250)
T 1oed_B          181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNVPPD  249 (250)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            456899999999999999999999999999999999999999999999999999999999999987753

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.74  E-value=6.4e-20  Score=142.57  Aligned_cols=68  Identities=28%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccC
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDN   90 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~   90 (116)
                      ..++++++++++++|++|++++|+.+++++|||+||||+||+|||+|++++++||++||+++|+.+++
T Consensus       191 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~  258 (260)
T 1oed_C          191 LHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHPP  258 (260)
T ss_dssp             -----------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC
Confidence            45689999999999999999999999999999999999999999999999999999999999987654

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.73  E-value=8e-19  Score=145.72  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=60.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchh
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPID   95 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~   95 (116)
                      ..+++++++++++||++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|+.
T Consensus       408 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~  480 (488)
T 4aq5_E          408 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP  480 (488)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred             cCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence            5678999999999999999999999999999999999999999999999999999999999998887777664

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.73  E-value=1.7e-19  Score=140.18  Aligned_cols=67  Identities=24%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD   89 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~   89 (116)
                      ..++++++++++++|++|++++|+.+++++|||+||||+||+|||+|++++++||++||+++|+.++
T Consensus       191 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~  257 (260)
T 1oed_E          191 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQV  257 (260)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            4468999999999999999999999999999999999999999999999999999999999988764

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.69  E-value=3e-18  Score=142.42  Aligned_cols=73  Identities=32%  Similarity=0.691  Sum_probs=62.7

Q ss_pred             CccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCch
Q psy3030          22 QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPI   94 (116)
Q Consensus        22 ~~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~   94 (116)
                      ...++++++++++++|++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|+
T Consensus       420 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~  492 (493)
T 4aq5_B          420 TLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNPF  492 (493)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSSTTC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999999998877776664

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.69  E-value=1.4e-18  Score=145.35  Aligned_cols=73  Identities=27%  Similarity=0.446  Sum_probs=62.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCchh
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPID   95 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~~   95 (116)
                      ..+++++++++++||++|++++++.+++++|||+||||+||+|||+|++++++||++||+++++.+.++.|++
T Consensus       436 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~  508 (522)
T 4aq5_C          436 LHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPFE  508 (522)
T ss_dssp             ------CCTTTTTHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC---
T ss_pred             cCHHHHHHHHHHHHHHHHHhhhhhhhhhccceeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence            4578999999999999999999999999999999999999999999999999999999999999888877775

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.62  E-value=5.3e-17  Score=123.97  Aligned_cols=61  Identities=41%  Similarity=0.926  Sum_probs=25.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy3030          24 TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA   84 (116)
Q Consensus        24 ~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~   84 (116)
                      +++++++++++++|++|++++|++++.++|||++|+|+||+|||+|++++++||++||+++
T Consensus       159 ~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~vA~VlDRl~l~iF~~~~i~gT~~i~~~~  219 (227)
T 1oed_A          159 NPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR  219 (227)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4689999999999999999999999999999999999999999999999999999999874

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.57  E-value=3.1e-16  Score=129.46  Aligned_cols=66  Identities=38%  Similarity=0.810  Sum_probs=57.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY   88 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~   88 (116)
                      ..++++++++++++|++|++++++.+++++|||+||+|+||+|||+|++++++||++||+++++.+
T Consensus       392 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~v~Dr~~l~~f~~~~~~gt~~i~~~~~~~~  457 (461)
T 4aq5_A          392 KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGRLIEL  457 (461)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            457899999999999999999999999999999999999999999999999999999999876543

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.39  E-value=1.2e-13  Score=110.58  Aligned_cols=65  Identities=34%  Similarity=0.737  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCCCch
Q psy3030          30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNTAPI   94 (116)
Q Consensus        30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~~~~   94 (116)
                      +++++++|+++++++++.++.++||+++|+|+||+|||+|+++++++|++|++++|+.++++.|+
T Consensus       305 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~~~~~~  369 (370)
T 2bg9_B          305 AVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNPF  369 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCCC
T ss_pred             chhhHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence            67789999999999999999999999999999999999999999999999999999998887765

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.30  E-value=9.7e-13  Score=105.28  Aligned_cols=62  Identities=24%  Similarity=0.409  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccCC
Q psy3030          30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDNT   91 (116)
Q Consensus        30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~~   91 (116)
                      +++++++|+++++++++.++.++||+++|+|+||+|||+|+++++++|++|++++|+.++++
T Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~~~  368 (369)
T 2bg9_C          307 GIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPA  368 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            57789999999999999999999999999999999999999999999999999999887654

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.25  E-value=3.1e-12  Score=102.30  Aligned_cols=60  Identities=22%  Similarity=0.333  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030          30 AFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD   89 (116)
Q Consensus        30 i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~   89 (116)
                      +++++++|+++++++++.++.++||+++|+|+||+|||+|.++++++|++||+++|+.++
T Consensus       309 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~  368 (370)
T 2bg9_E          309 CVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQV  368 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chhhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence            677899999999999999999999999999999999999999999999999999888754

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.08  E-value=3.4e-11  Score=96.22  Aligned_cols=55  Identities=44%  Similarity=0.959  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy3030          29 SAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQ   83 (116)
Q Consensus        29 ~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~   83 (116)
                      ++.+++++|+++++++++.++.++||+++|+|+||+|||+|.++++++|+++|++
T Consensus       307 ~~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~  361 (370)
T 2bg9_A          307 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG  361 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678899999999999999999999999999999999999999999999999975

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=98.15  E-value=8.6e-07  Score=64.47  Aligned_cols=34  Identities=47%  Similarity=0.906  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q psy3030          54 WKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLY   88 (116)
Q Consensus        54 Wk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~   88 (116)
                      +|++|+|+||+|+|+|.++++++|++|+++ |+.+
T Consensus       129 ~k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~  162 (164)
T 2ksr_A          129 GGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQ  162 (164)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHheec-cccc
Confidence            599999999999999999999999999988 6654

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=97.36  E-value=0.00013  Score=51.34  Aligned_cols=31  Identities=39%  Similarity=0.741  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q psy3030          58 SMVLDRFFLCVFTAACVLGTCGIIFQAPSLYD   89 (116)
Q Consensus        58 A~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~   89 (116)
                      ++|+||+|+|+|.+++++||++++++ |+.++
T Consensus       106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~  136 (137)
T 2lly_A          106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG  136 (137)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence            48999999999999999999999998 77654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	7e-21
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	1e-20
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	3e-19
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	4e-16

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 81.7 bits (201), Expect = 7e-21
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P  L  ++  A E +++IA+ ++ A + +++ +DW+YV+MV DR FL VF   C +GT  
Sbjct: 178 PVTLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFS 237

Query: 80  IIFQAPSLY 88
           I   A    
Sbjct: 238 IFLDASHNV 246

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 81.4 bits (200), Expect = 1e-20
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
             QL  EI S  +   +I + IK+ +  +E V +W  V   +DR  + + T   VLGT  
Sbjct: 188 SDQLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIF 247

Query: 80  IIFQA 84
           I    
Sbjct: 248 IFVMG 252

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 77.9 bits (191), Expect = 3e-19
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 21  RQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGI 80
               PEI S  E   FIA+  K+ +      E+W  +  V+D+    +      +GT  I
Sbjct: 189 ANFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAI 248

Query: 81  IFQAPSLYDNTAP 93
                  + N  P
Sbjct: 249 FLTG---HFNQVP 258

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 69.0 bits (168), Expect = 4e-16
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 20  PRQLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCG 79
           P    P++ SA EGV++IA+H+K  ++ +   E+WKYV+MV+D   LCVF   C++GT  
Sbjct: 155 PLIKNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVS 214

Query: 80  IIFQ 83
           +   
Sbjct: 215 VFAG 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.54
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.47
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.27
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.07

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.54  E-value=4.7e-16  Score=115.29  Aligned_cols=68  Identities=34%  Similarity=0.691  Sum_probs=30.6

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccC
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPSLYDN   90 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~~~~~   90 (116)
                      ..+.++++.+++++++++++++++.++.++||+++|+|+||+|||+|+++++++|++||+++|+...+
T Consensus       181 ~~~~~~~i~~~v~~i~~~~~~~~~~~~~~~EW~~vA~VlDRlfl~lF~l~~vi~t~~i~l~ap~~~~~  248 (250)
T d1oedb_         181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNVPP  248 (250)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence            34567999999999999999999999999999999999999999999999999999999999987543

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.47  E-value=2.1e-15  Score=111.76  Aligned_cols=65  Identities=31%  Similarity=0.488  Sum_probs=26.6

Q ss_pred             CccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q psy3030          22 QLTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQAPS   86 (116)
Q Consensus        22 ~~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~p~   86 (116)
                      ...++++++.+++++|+++++++++.++.++||++||+|+||+|||+|+++++++|+++|+++.+
T Consensus       190 ~~~~~l~~~~~~v~~i~~~~~~~~~~~~~~~EWk~vA~ViDRlfl~lF~i~~vi~ti~ifl~~~~  254 (260)
T d1oedc_         190 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF  254 (260)
T ss_dssp             ------------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            34457888999999999999999999999999999999999999999999999999999987543

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.27  E-value=2.8e-13  Score=100.59  Aligned_cols=62  Identities=26%  Similarity=0.470  Sum_probs=25.6

Q ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy3030          23 LTPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA   84 (116)
Q Consensus        23 ~~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~   84 (116)
                      ..+.++++.+++++++++++++++.++.++||+++|+|+||+|||+|.++++++|+++|+++
T Consensus       191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~eW~~vA~viDR~~l~vF~~~~~i~t~~i~l~~  252 (260)
T d1oede_         191 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTG  252 (260)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34467889999999999999999999999999999999999999999999999999999865

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.07  E-value=1.3e-11  Score=90.32  Aligned_cols=61  Identities=41%  Similarity=0.926  Sum_probs=25.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q psy3030          24 TPEILSAFEGVRFIAQHIKDADKDNEIVEDWKYVSMVLDRFFLCVFTAACVLGTCGIIFQA   84 (116)
Q Consensus        24 ~~el~~i~~~vr~I~~~~~~~d~~~~~~~EWk~vA~VlDRlfl~ifll~~~v~tl~i~~~~   84 (116)
                      .++.+.+.++++.++++++++++.++.++||+.+|.|+||+||++|.++++++++++|++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eW~~vA~viDRi~~~~F~l~~ii~~i~if~~~  219 (227)
T d1oeda_         159 NPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR  219 (227)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888899999999999999999999999999999999999999999999999999853