Psyllid ID: psy3040

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFNHTI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccEEEEcc
Coil and Loop (DISEMBL)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETlrspstrlGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILlpiipgligshLTDIFEVFSRLaawnsdnprqlaSSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNmrcdnvnacnvfnhti
Flexible Loop (DISEMBL)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFNHTI
Low Complexity Region (SEG)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEvisallvlnillpiipgligshlTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFNHTI
Disordered region (IsUnstruct)
***WLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFN***
Disordered Region (DISOPRED)
***WLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYN***********FNHTI
Disordered Region (DISEMBL)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFNHTI
Disordered Region (DISPRO)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVNACNVFNHTI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9EP53	1161	Hamartin OS=Mus musculus	yes	N/A	0.910	0.148	0.433	2e-38
Q9Z136	1163	Hamartin OS=Rattus norveg	yes	N/A	0.910	0.147	0.433	4e-38
Q92574	1164	Hamartin OS=Homo sapiens	yes	N/A	0.910	0.147	0.439	5e-37

>sp|Q9EP53|TSC1_MOUSE Hamartin OS=Mus musculus GN=Tsc1 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct: 39  PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKINEYVGKAATRLSILSLLGHVVR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

In complex with TSC2, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling (By similarity). Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling.
Mus musculus (taxid: 10090)

>sp|Q9Z136|TSC1_RAT Hamartin OS=Rattus norvegicus GN=Tsc1 PE=1 SV=1

 Score =  157 bits (397), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 118/173 (68%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct: 39  PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNEYVGKAATRLSILSLLGHVVR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

In complex with TSC2, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling (By similarity). Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q92574|TSC1_HUMAN Hamartin OS=Homo sapiens GN=TSC1 PE=1 SV=2

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 120/173 (69%), Gaps = 1/173 (0%)

Query: 3   PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
           P LVN LVDY+L ++S  A+ +L  ++EPHDK L DR+ E +   +TRL  L+LLGH+++
Sbjct: 39  PMLVNTLVDYYLETSSQPALHILTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIR 98

Query: 63  RQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEV 122
            QP+W +K+   P L+  LLK LK ++D+V + + +LVL  +LP+IP     HL D F++
Sbjct: 99  LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query: 123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           F RL++W    P  +A  +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct: 158 FGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

In complex with TSC2, inhibits the nutrient-mediated or growth factor-stimulated phosphorylation of S6K1 and EIF4EBP1 by negatively regulating mTORC1 signaling. Seems not to be required for TSC2 GAP activity towards RHEB. Implicated as a tumor suppressor. Involved in microtubule-mediated protein transport, but this seems to be due to unregulated mTOR signaling.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
328718911	1018	PREDICTED: hamartin-like [Acyrthosiphon	0.957	0.177	0.560	4e-51
260802893	272	hypothetical protein BRAFLDRAFT_215496 [	0.973	0.676	0.492	9e-48
410930081	1266	PREDICTED: hamartin-like [Takifugu rubri	0.899	0.134	0.485	9e-44
41056033	1128	hamartin [Danio rerio] gi|32766372|gb|AA	0.920	0.154	0.488	7e-43
347969902	1213	AGAP003445-PA [Anopheles gambiae str. PE	0.968	0.150	0.455	8e-43
91078944	1047	PREDICTED: similar to Tsc1 CG6147-PA [Tr	0.962	0.173	0.494	8e-43
328790125	1044	PREDICTED: hamartin [Apis mellifera]	0.973	0.176	0.5	1e-42
380018485	1023	PREDICTED: LOW QUALITY PROTEIN: hamartin	0.973	0.179	0.5	1e-42
326677762	1228	PREDICTED: hamartin-like [Danio rerio]	0.899	0.138	0.479	2e-42
157167749	969	hypothetical protein AaeL_AAEL002548 [Ae	0.968	0.188	0.455	3e-42

>gi|328718911|ref|XP_001942982.2| PREDICTED: hamartin-like [Acyrthosiphon pisum]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 142/189 (75%), Gaps = 8/189 (4%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
           KEPWL+NG+ DYF+++ S RAV+VLV +REPHDK+LFDR+ + LRS + RL ALTLLGH+
Sbjct: 36  KEPWLLNGMYDYFMSTGSQRAVEVLVAVREPHDKYLFDRLVDGLRS-TNRLQALTLLGHV 94

Query: 61  VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIF 120
           V+RQPTWL KI +H  L + L+K+LK+E++++ + SALL LN+LL +IP LI S L DIF
Sbjct: 95  VKRQPTWLIKITNHHLLKE-LIKLLKSENEIITITSALLALNVLLTVIPALISSFLPDIF 153

Query: 121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
           E FSRLAAWN+    ++   H+ HLQ++LY LF QLY M+PC+F+ YLKQ+Y+       
Sbjct: 154 EGFSRLAAWNTSQKNKVPEIHLFHLQISLYVLFVQLYSMYPCSFVLYLKQQYST------ 207

Query: 181 ACNVFNHTI 189
              VF HTI
Sbjct: 208 PDLVFTHTI 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260802893|ref|XP_002596326.1| hypothetical protein BRAFLDRAFT_215496 [Branchiostoma floridae] gi|229281581|gb|EEN52338.1| hypothetical protein BRAFLDRAFT_215496 [Branchiostoma floridae]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 94/191 (49%), Positives = 143/191 (74%), Gaps = 7/191 (3%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLR--SPSTRLGALTLLG 58
           +EPWL+N LV++++A+N+  A++VLV IREPHDK L  ++ + +     ++RL ALTLLG
Sbjct: 38  REPWLLNCLVEFYVATNNQPALEVLVGIREPHDKHLLSKLQQYVARGCQASRLAALTLLG 97

Query: 59  HIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTD 118
           H+V++ P+WLYKI  H ++M  LLK+LK E+D+  V+S +L++  LLP++P LI  +LT 
Sbjct: 98  HVVRKHPSWLYKITQH-SIMATLLKLLKRETDIPNVMSGVLIITTLLPMVPALIAPYLTS 156

Query: 119 IFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDN 178
           IFEVFSRLAAWN++ P  +   ++LHL +A+YALF++LY M+PC FL+YL+  Y+ R D+
Sbjct: 157 IFEVFSRLAAWNTNKPGPIPDVYLLHLHIAVYALFHRLYSMYPCNFLAYLRAYYSTR-DH 215

Query: 179 VNACNVFNHTI 189
           +   +VF +TI
Sbjct: 216 I---DVFEYTI 223

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410930081|ref|XP_003978427.1| PREDICTED: hamartin-like [Takifugu rubripes]

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 83/171 (48%), Positives = 127/171 (74%), Gaps = 1/171 (0%)

Query: 5   LVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQ 64
           L+NGLVDYFL +NS++A+ +L  +REPHDK L D++ E +   S RL  LTLLGH+V++Q
Sbjct: 42  LLNGLVDYFLETNSMQAMHILSSVREPHDKHLLDKMNECMTKQSCRLPTLTLLGHVVRKQ 101

Query: 65  PTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFS 124
           P+W++KI  +P L+  L   LKT++D+V +I+ +LVL  LLP+IP     HL + F++F 
Sbjct: 102 PSWIHKIARYPLLLSLLKC-LKTDTDVVVLITGVLVLITLLPMIPQAAKQHLWEYFDIFG 160

Query: 125 RLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           RLA+WN  NP Q++  +++HL  ++Y+LF++LYGM+PC F+SYL+  Y+M+
Sbjct: 161 RLASWNLKNPGQVSEVYLIHLHASVYSLFHRLYGMYPCNFVSYLRSHYSMK 211

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41056033|ref|NP_956346.1| hamartin [Danio rerio] gi|32766372|gb|AAH55190.1| Tuberous sclerosis 1a [Danio rerio]

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 86/176 (48%), Positives = 125/176 (71%), Gaps = 2/176 (1%)

Query: 5   LVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQ 64
           L+N LVDYFL +NS +AVD+L  +REPHDK+L D++ E +   S RL  +TLLGH+V++Q
Sbjct: 42  LLNSLVDYFLQTNSSQAVDILSSVREPHDKYLLDKMNECMGKQSCRLSTITLLGHVVRKQ 101

Query: 65  PTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFS 124
           P W++KI   P L+  LLK LKT+SD+V +I+ +LVL  L+P+IP      L D F++F 
Sbjct: 102 PPWIHKIARFPLLVS-LLKCLKTDSDVVVLITGVLVLITLMPMIPQTNKQLLCDYFDIFG 160

Query: 125 RLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
           RLAAWN  +P        +HL  ++Y+LF++LYGM+PC F+SYL+  Y+M+ +NV+
Sbjct: 161 RLAAWNQRHPGHAQGVFAVHLHASVYSLFHRLYGMYPCNFVSYLRAYYSMK-ENVD 215

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|347969902|ref|XP_311735.5| AGAP003445-PA [Anopheles gambiae str. PEST] gi|333467643|gb|EAA07349.5| AGAP003445-PA [Anopheles gambiae str. PEST]

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 133/189 (70%), Gaps = 6/189 (3%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
           KE WL   +++YF  ++S+R V++LV +++PHDK +FDR++E +RS +++  ALTL GHI
Sbjct: 33  KESWLACNMMEYFAHTSSIRIVEILVKVQQPHDKHIFDRLSEWIRSGTSKTLALTLFGHI 92

Query: 61  VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIF 120
           +Q++P WLYK+ +H  L+K++LK+ K E D+  +I+A+L +  LLP+IP  +GS + D+F
Sbjct: 93  IQKRPLWLYKVGNH-QLVKEVLKLSKVEKDITSLINAVLCIIDLLPVIPLAMGSFVQDLF 151

Query: 121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
           +VF+ LA WN  N   L    ++HLQ  LY LF +LYGM+PC F+++LKQEY+    +  
Sbjct: 152 DVFNYLATWNQ-NESHLPEYQLIHLQFGLYELFTRLYGMYPCNFVAFLKQEYS----STG 206

Query: 181 ACNVFNHTI 189
              VF HTI
Sbjct: 207 RQAVFQHTI 215

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078944|ref|XP_974036.1| PREDICTED: similar to Tsc1 CG6147-PA [Tribolium castaneum] gi|270003690|gb|EFA00138.1| hypothetical protein TcasGA2_TC002959 [Tribolium castaneum]

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 135/192 (70%), Gaps = 10/192 (5%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPST---RLGALTLL 57
           K+ WLVNGL DY+L++NS   + VL+ I+EPH ++LFDR+++++   S    ++ ALTLL
Sbjct: 31  KDSWLVNGLYDYYLSTNSANTIVVLINIKEPHHQYLFDRLSDSIAKSSKTDVKVQALTLL 90

Query: 58  GHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLT 117
           GHIV+ QPTWLY++  H  L   L  + + E +++ +ISALLVL +L+P+IP  +G  L 
Sbjct: 91  GHIVRNQPTWLYRLSEHHLLKDLLRLLKE-EVEILPLISALLVLIVLIPMIPYSMGELLN 149

Query: 118 DIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCD 177
            +FE+FSRLA+WN  NP +L    ++H+QVALYALF +LYGMFPC FL+YL+ +Y    D
Sbjct: 150 HVFEIFSRLASWNC-NPGRLVEEQMIHMQVALYALFLRLYGMFPCNFLAYLRTQYK---D 205

Query: 178 NVNACNVFNHTI 189
              A  VF HTI
Sbjct: 206 KNRA--VFIHTI 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790125|ref|XP_001119992.2| PREDICTED: hamartin [Apis mellifera]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 143/210 (68%), Gaps = 26/210 (12%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLR---SPSTRLGALTLL 57
           K+ WLVNGL DY+L++NSLRAV+VL  +R+PHDK L DR++E L    S S R+  LTLL
Sbjct: 38  KDNWLVNGLFDYYLSTNSLRAVEVLAGVRDPHDKHLLDRLSEALSKSGSSSQRIQTLTLL 97

Query: 58  GHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLT 117
           GHI +RQPTWLYK+ SH TL +DLLK+LK E+D + ++SALL+L +LLP++P  +G +L+
Sbjct: 98  GHIARRQPTWLYKLASH-TLFRDLLKLLKMEADTLSLMSALLLLVMLLPMLPAALGPYLS 156

Query: 118 DIFEVFSRLAAWNSDNPRQLASS------------------HVLHLQVALYALFYQLYGM 159
           +IFEVF RLA++       + SS                  ++LHLQV LY+LF++LY M
Sbjct: 157 EIFEVFGRLASYYHHQSSSIFSSPMHFTSKTITGTIDKNHLYLLHLQVGLYSLFHRLYAM 216

Query: 160 FPCTFLSYLKQEYNMRCDNVNACNVFNHTI 189
           +PC F+SYLKQ+Y  R    +    F HTI
Sbjct: 217 YPCNFISYLKQQYIQR----DQLATFTHTI 242

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018485|ref|XP_003693158.1| PREDICTED: LOW QUALITY PROTEIN: hamartin-like [Apis florea]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 143/210 (68%), Gaps = 26/210 (12%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLR---SPSTRLGALTLL 57
           K+ WLVNGL DY+L++NSLRAV+VL  +R+PHDK L DR++E L    S S R+  LTLL
Sbjct: 16  KDNWLVNGLFDYYLSTNSLRAVEVLAGVRDPHDKHLLDRLSEALSKSGSSSQRIQTLTLL 75

Query: 58  GHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLT 117
           GHI +RQPTWLYK+ SH TL +DLLK+LK E+D + ++SALL+L +LLP++P  +G +L+
Sbjct: 76  GHIARRQPTWLYKLTSH-TLFRDLLKLLKMEADTLSLMSALLLLVMLLPMLPAALGPYLS 134

Query: 118 DIFEVFSRLAAWNSDNPRQLASS------------------HVLHLQVALYALFYQLYGM 159
           +IFEVF RLA++       + SS                  ++LHLQV LY+LF++LY M
Sbjct: 135 EIFEVFGRLASYYHHQSSSIFSSPMHFTSKTITGTIDKNHLYLLHLQVGLYSLFHRLYAM 194

Query: 160 FPCTFLSYLKQEYNMRCDNVNACNVFNHTI 189
           +PC F+SYLKQ+Y  R    +    F HTI
Sbjct: 195 YPCNFISYLKQQYIQR----DQLATFTHTI 220

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326677762|ref|XP_003200907.1| PREDICTED: hamartin-like [Danio rerio]

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/171 (47%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 5   LVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQ 64
           L+NGLVDYFL +NS + V +L  +REPHDK LFD++ E +     RL  LTLLGH+V++Q
Sbjct: 42  LLNGLVDYFLETNSAQTVHILSSVREPHDKHLFDKMNECMAKAPCRLPTLTLLGHVVRKQ 101

Query: 65  PTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFS 124
           P+W++KI  +P L+  L   LKT++D+V +I+ +LVL  LLP+IP     HL + F++F 
Sbjct: 102 PSWIHKIAHYPLLLSLLKC-LKTDTDVVVLITGVLVLITLLPMIPQAGKQHLYEFFDIFG 160

Query: 125 RLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
           RLA+WN  NP  +   +++HL  ++Y+LF++LYGM+PC F+SYL+  Y+M+
Sbjct: 161 RLASWNLRNPGHVPEVYLIHLHASVYSLFHRLYGMYPCNFVSYLRSHYSMK 211

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157167749|ref|XP_001655611.1| hypothetical protein AaeL_AAEL002548 [Aedes aegypti] gi|108882026|gb|EAT46251.1| AAEL002548-PA, partial [Aedes aegypti]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/189 (45%), Positives = 132/189 (69%), Gaps = 6/189 (3%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
           +EPW  + ++DYF  ++S+R VD+LV ++ PHDKF+ D++ E +RS S ++ ALTL GHI
Sbjct: 1   REPWFAHYMMDYFGQTSSIRVVDILVKVQTPHDKFILDKLTEWIRSGSNKMLALTLFGHI 60

Query: 61  VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIF 120
           +Q++PTWLYK+ +H  L+K++LK  K E +++ +ISA+L +  LLP+IP ++G  + D+F
Sbjct: 61  IQKRPTWLYKVGNH-LLVKEVLKQSKMEREIIPLISAVLCIIDLLPVIPLVMGMFVQDLF 119

Query: 121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
           E+F+ LA ++ +    L    ++HLQ  LY LF +LYGM+PC F+ +LKQEY  R D   
Sbjct: 120 EIFNYLATFDRNTSVSLPEDQLIHLQFVLYELFNRLYGMYPCNFVMFLKQEY--RGDKQ- 176

Query: 181 ACNVFNHTI 189
              VF HTI
Sbjct: 177 --AVFQHTI 183

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
ZFIN|ZDB-GENE-030131-9111	1128	tsc1a "tuberous sclerosis 1a"	0.941	0.157	0.433	5.3e-36
UNIPROTKB|E1C066	998	TSC1 "Uncharacterized protein"	0.910	0.172	0.410	3.5e-34
UNIPROTKB|Q92574	1164	TSC1 "Hamartin" [Homo sapiens	0.910	0.147	0.387	1.4e-31
MGI|MGI:1929183	1161	Tsc1 "tuberous sclerosis 1" [M	0.925	0.150	0.384	2.2e-31
RGD|620124	1163	Tsc1 "tuberous sclerosis 1" [R	0.925	0.150	0.384	3.6e-31
UNIPROTKB|F1MM99	1160	TSC1 "Uncharacterized protein"	0.910	0.148	0.375	1.6e-30
UNIPROTKB|E2QSP3	1167	TSC1 "Uncharacterized protein"	0.931	0.150	0.359	4.3e-30
FB|FBgn0026317	1100	Tsc1 "Tsc1" [Drosophila melano	0.973	0.167	0.354	6.8e-28
UNIPROTKB|E2RJC9	1116	TSC1 "Uncharacterized protein"	0.328	0.055	0.396	1.1e-17

ZFIN|ZDB-GENE-030131-9111 tsc1a "tuberous sclerosis 1a" [Danio rerio (taxid:7955)]

 Score = 400 (145.9 bits), Expect = 5.3e-36, P = 5.3e-36
 Identities = 78/180 (43%), Positives = 112/180 (62%)

Query:     1 KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
             K   L+N LVDYFL +NS +AVD+L  +REPHDK+L D++ E +   S RL  +TLLGH+
Sbjct:    38 KGTMLLNSLVDYFLQTNSSQAVDILSSVREPHDKYLLDKMNECMGKQSCRLSTITLLGHV 97

Query:    61 VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIF 120
             V++QP W++KI   P L+  LLK LKT+SD+V                         D F
Sbjct:    98 VRKQPPWIHKIARFPLLVS-LLKCLKTDSDVVVLITGVLVLITLMPMIPQTNKQLLCDYF 156

Query:   121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
             ++F RLAAWN  +P        +HL  ++Y+LF++LYGM+PC F+SYL+  Y+M+ +NV+
Sbjct:   157 DIFGRLAAWNQRHPGHAQGVFAVHLHASVYSLFHRLYGMYPCNFVSYLRAYYSMK-ENVD 215

GO:0003674 "molecular_function" evidence=ND

GO:0048793 "pronephros development" evidence=IGI;IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0032006 "regulation of TOR signaling cascade" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

UNIPROTKB|E1C066 TSC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 382 (139.5 bits), Expect = 3.5e-34, P = 3.5e-34
 Identities = 71/173 (41%), Positives = 109/173 (63%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L +NS +A+ +L  ++EPHDK L D++ E +   +TRL  L+LLGH+++
Sbjct:    39 PMLVNSLVDYYLETNSQQALHILSTLQEPHDKHLLDKINEYMGKAATRLPTLSLLGHVIR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
             RQP+W +K+   P L+  LLK LKT++D+V                         D F +
Sbjct:    99 RQPSWKHKLSQAPLLLS-LLKCLKTDTDVVVLTTGVLVLITMLPMIPQSGKQYLHDFFGI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
             F RL+AW   NP  +A  +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct:   158 FGRLSAWCLQNPGHVAEIYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

GO:0001822 "kidney development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0032862 "activation of Rho GTPase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IEA

GO:0045792 "negative regulation of cell size" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051492 "regulation of stress fiber assembly" evidence=IEA

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

UNIPROTKB|Q92574 TSC1 "Hamartin" [Homo sapiens (taxid:9606)]

 Score = 359 (131.4 bits), Expect = 1.4e-31, P = 1.4e-31
 Identities = 67/173 (38%), Positives = 106/173 (61%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L ++S  A+ +L  ++EPHDK L DR+ E +   +TRL  L+LLGH+++
Sbjct:    39 PMLVNTLVDYYLETSSQPALHILTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
              QP+W +K+   P L+  LLK LK ++D+V                         D F++
Sbjct:    99 LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
             F RL++W    P  +A  +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct:   158 FGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

GO:0001822 "kidney development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=IEA

GO:0032794 "GTPase activating protein binding" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0045792 "negative regulation of cell size" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0005938 "cell cortex" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0006407 "rRNA export from nucleus" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IMP

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0043234 "protein complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0001952 "regulation of cell-matrix adhesion" evidence=IMP

GO:0051492 "regulation of stress fiber assembly" evidence=IDA

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IDA

GO:0006417 "regulation of translation" evidence=IDA

GO:0007160 "cell-matrix adhesion" evidence=IMP

GO:0032862 "activation of Rho GTPase activity" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0033596 "TSC1-TSC2 complex" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050821 "protein stabilization" evidence=IDA

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

MGI|MGI:1929183 Tsc1 "tuberous sclerosis 1" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 68/177 (38%), Positives = 107/177 (60%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct:    39 PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKINEYVGKAATRLSILSLLGHVVR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
              QP+W +K+   P L+  LLK LK ++D+V                         D F++
Sbjct:    99 LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNV 179
             F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+ +NV
Sbjct:   158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK-ENV 213

GO:0001822 "kidney development" evidence=IMP

GO:0001843 "neural tube closure" evidence=IMP

GO:0001952 "regulation of cell-matrix adhesion" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0006407 "rRNA export from nucleus" evidence=ISO

GO:0006417 "regulation of translation" evidence=ISO

GO:0006813 "potassium ion transport" evidence=IGI;IMP

GO:0007160 "cell-matrix adhesion" evidence=ISO

GO:0007399 "nervous system development" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;IMP

GO:0009790 "embryo development" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0021766 "hippocampus development" evidence=IMP

GO:0021987 "cerebral cortex development" evidence=IMP

GO:0030027 "lamellipodium" evidence=ISO

GO:0030030 "cell projection organization" evidence=IMP

GO:0030426 "growth cone" evidence=ISO

GO:0030695 "GTPase regulator activity" evidence=ISO

GO:0032007 "negative regulation of TOR signaling cascade" evidence=ISO

GO:0032794 "GTPase activating protein binding" evidence=ISO

GO:0032862 "activation of Rho GTPase activity" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0033596 "TSC1-TSC2 complex" evidence=ISO

GO:0042552 "myelination" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=ISO

GO:0044430 "cytoskeletal part" evidence=ISO

GO:0045792 "negative regulation of cell size" evidence=IGI;IMP

GO:0045859 "regulation of protein kinase activity" evidence=IGI

GO:0047485 "protein N-terminus binding" evidence=ISO;IPI

GO:0050808 "synapse organization" evidence=IMP

GO:0050821 "protein stabilization" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051492 "regulation of stress fiber assembly" evidence=ISO

GO:0051893 "regulation of focal adhesion assembly" evidence=ISO

GO:0051894 "positive regulation of focal adhesion assembly" evidence=ISO

GO:0055007 "cardiac muscle cell differentiation" evidence=IMP

RGD|620124 Tsc1 "tuberous sclerosis 1" [Rattus norvegicus (taxid:10116)]

 Score = 355 (130.0 bits), Expect = 3.6e-31, P = 3.6e-31
 Identities = 68/177 (38%), Positives = 107/177 (60%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   +TRL  L+LLGH+V+
Sbjct:    39 PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNEYVGKAATRLSILSLLGHVVR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
              QP+W +K+   P L+  LLK LK ++D+V                         D F++
Sbjct:    99 LQPSWKHKLSQAP-LLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNV 179
             F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+ +NV
Sbjct:   158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK-ENV 213

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0001952 "regulation of cell-matrix adhesion" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0005884 "actin filament" evidence=IEA;ISO

GO:0005938 "cell cortex" evidence=IEA;ISO

GO:0006407 "rRNA export from nucleus" evidence=IEA;ISO

GO:0006417 "regulation of translation" evidence=ISO

GO:0006813 "potassium ion transport" evidence=IEA;ISO

GO:0007160 "cell-matrix adhesion" evidence=IEA;ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0009790 "embryo development" evidence=ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0017148 "negative regulation of translation" evidence=IEA;ISO

GO:0021766 "hippocampus development" evidence=IEA;ISO

GO:0021987 "cerebral cortex development" evidence=IEA;ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030030 "cell projection organization" evidence=IEA;ISO

GO:0030426 "growth cone" evidence=IDA

GO:0030695 "GTPase regulator activity" evidence=IMP

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA;ISO

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0032862 "activation of Rho GTPase activity" evidence=IEA;ISO

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0033596 "TSC1-TSC2 complex" evidence=IEA;ISO

GO:0042552 "myelination" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043234 "protein complex" evidence=ISO;IDA

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IEA;ISO

GO:0044430 "cytoskeletal part" evidence=IDA

GO:0045792 "negative regulation of cell size" evidence=IEA;ISO

GO:0045859 "regulation of protein kinase activity" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=ISO;IPI

GO:0050808 "synapse organization" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0051291 "protein heterooligomerization" evidence=IDA

GO:0051492 "regulation of stress fiber assembly" evidence=ISO;IMP

GO:0051893 "regulation of focal adhesion assembly" evidence=IMP

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IEA;ISO

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA;ISO

UNIPROTKB|F1MM99 TSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 65/173 (37%), Positives = 104/173 (60%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L +NS   + +L  ++EPHDK L D++ E +   ++RL AL LLGH+V+
Sbjct:    39 PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNEYVGKAASRLSALLLLGHVVR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
              QP+W +K+   P L+  LLK LK ++D++                         D F++
Sbjct:    99 LQPSWKHKLSQAP-LLPSLLKCLKMDTDVIVLTTGVLVLITMLPMIPQSGKQHLHDFFDI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMR 175
             F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+
Sbjct:   158 FGRLSSWCLKKPGHVTEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK 210

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IEA

GO:0051492 "regulation of stress fiber assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045792 "negative regulation of cell size" evidence=IEA

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0032862 "activation of Rho GTPase activity" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

UNIPROTKB|E2QSP3 TSC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 4.3e-30, P = 4.3e-30
 Identities = 64/178 (35%), Positives = 108/178 (60%)

Query:     3 PWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQ 62
             P LVN LVDY+L +NS   + +L  ++EPHDK L D++ + +   ++RL AL+LLGH+++
Sbjct:    39 PMLVNTLVDYYLETNSQPVLHILTTLQEPHDKHLLDKMNDCMGRAASRLPALSLLGHVIR 98

Query:    63 RQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIFEV 122
              QP W +K+   P L+  LLK LK ++D++                         D F++
Sbjct:    99 LQPPWKHKLSQAP-LLPSLLKCLKMDTDVIVLTTGVLVLITMLPMIPQSGKQHLHDFFDI 157

Query:   123 FSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
             F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+ +N++
Sbjct:   158 FGRLSSWCLKKPGHVTEIYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK-ENLD 214

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IEA

GO:0051492 "regulation of stress fiber assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045792 "negative regulation of cell size" evidence=IEA

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0032862 "activation of Rho GTPase activity" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

FB|FBgn0026317 Tsc1 "Tsc1" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 6.8e-28, P = 6.8e-28
 Identities = 67/189 (35%), Positives = 104/189 (55%)

Query:     1 KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
             KE W+V  ++DYF  + S R ++VLV  + PHD ++FD++ + L+    R+ +L +   I
Sbjct:    33 KEQWVVKFMLDYFFTTGSQRILEVLVKAQAPHDGYIFDKLDDCLKQSQHRVQSLQVFCFI 92

Query:    61 VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEXXXXXXXXXXXXXXXXXXXXXXXTDIF 120
             V+  PTWLYKI  H  L+K + K++  E ++V                         D+F
Sbjct:    93 VRHHPTWLYKIEKH-RLIKSVFKLMTHEKEIVPLMSALLCIITLLPIIPNSVPNFLNDLF 151

Query:   121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
             EVF  LA+W   N  +L    ++HLQ+ L  LF++LYGM+PC+F++YL  E+  R    N
Sbjct:   152 EVFGHLASWKLQNSNKLPDEKLVHLQLGLQMLFHRLYGMYPCSFIAYLV-EFIKRG---N 207

Query:   181 ACNVFNHTI 189
                +F HTI
Sbjct:   208 GGGIFQHTI 216

GO:0008285 "negative regulation of cell proliferation" evidence=IGI;IMP

GO:0051726 "regulation of cell cycle" evidence=IMP;TAS

GO:0030308 "negative regulation of cell growth" evidence=IGI;IMP;TAS

GO:0046621 "negative regulation of organ growth" evidence=IGI;IMP

GO:0046620 "regulation of organ growth" evidence=NAS

GO:0008286 "insulin receptor signaling pathway" evidence=NAS

GO:0045792 "negative regulation of cell size" evidence=IGI;IMP;NAS;TAS

GO:0046627 "negative regulation of insulin receptor signaling pathway" evidence=IGI

GO:0001558 "regulation of cell growth" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007165 "signal transduction" evidence=IGI

GO:0007584 "response to nutrient" evidence=IMP

GO:0019900 "kinase binding" evidence=IPI

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0042325 "regulation of phosphorylation" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

UNIPROTKB|E2RJC9 TSC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 25/63 (39%), Positives = 46/63 (73%)

Query:   118 DIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCD 177
             D F++F RL++W    P  +   +++HL  ++YALF++LYGM+PC F+S+L+  Y+M+ +
Sbjct:   102 DFFDIFGRLSSWCLKKPGHVTEIYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMK-E 160

Query:   178 NVN 180
             N++
Sbjct:   161 NLD 163

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0051894 "positive regulation of focal adhesion assembly" evidence=IEA

GO:0051492 "regulation of stress fiber assembly" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0050808 "synapse organization" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045792 "negative regulation of cell size" evidence=IEA

GO:0043666 "regulation of phosphoprotein phosphatase activity" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0033596 "TSC1-TSC2 complex" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0032862 "activation of Rho GTPase activity" evidence=IEA

GO:0032007 "negative regulation of TOR signaling cascade" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006407 "rRNA export from nucleus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
pfam04388	667	pfam04388, Hamartin, Hamartin protein	6e-67

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score =  215 bits (550), Expect = 6e-67
 Identities = 93/189 (49%), Positives = 130/189 (68%), Gaps = 5/189 (2%)

Query: 1   KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHI 60
           +   LVN LVDYFL +NS +A+ +L  I+EPHDK+L D++ E L  P TRL  LTLLGH+
Sbjct: 36  RGQMLVNSLVDYFLETNSQQALHILSSIQEPHDKYLLDKLNECLGKPPTRLPTLTLLGHV 95

Query: 61  VQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIF 120
           V+RQP WL+KI   P L+  LLK LKT++D+V +I+ALLVL  LLP+IP     HL D+F
Sbjct: 96  VRRQPPWLHKISRTP-LLDSLLKCLKTDTDVVVLITALLVLITLLPMIPQSGKQHLYDLF 154

Query: 121 EVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMFPCTFLSYLKQEYNMRCDNVN 180
           ++F RLA+WN  NP      H++HL  ++Y+LF++LYGM+PC F+SYL+  Y+M+     
Sbjct: 155 DIFGRLASWNLQNPGHANDVHLVHLHASVYSLFHRLYGMYPCNFVSYLRSHYSMK----E 210

Query: 181 ACNVFNHTI 189
             + F   +
Sbjct: 211 NVDTFQEVV 219

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	100.0
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.95
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.45
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	85.39
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	81.01

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=100.00  E-value=1.2e-64  Score=483.69  Aligned_cols=184  Identities=52%  Similarity=1.004  Sum_probs=180.8

Q ss_pred             CchhhhhHHHHHHhccCcHHHHHHHHhhcCCCchhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccChhHHHH
Q psy3040           1 KEPWLVNGLVDYFLASNSLRAVDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKD   80 (189)
Q Consensus         1 ~~~~l~~~lvdy~~~t~s~~~~~iL~~~g~~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~   80 (189)
                      |||||||+|||||++|||++|++||+++++||+|+||++||+||++|++|+++|+|||+|||+||+|+|+|++|| ||++
T Consensus        36 ~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~-Lf~~  114 (668)
T PF04388_consen   36 REPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTP-LFKS  114 (668)
T ss_pred             chHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcCh-hHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHhcccccCCCCCCccchhhhHHhHHHHHHHHHhcc
Q psy3040          81 LLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAAWNSDNPRQLASSHVLHLQVALYALFYQLYGMF  160 (189)
Q Consensus        81 LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~Rl~~W~~~~~~~~~e~~l~hl~~~~~~lFt~LYGly  160 (189)
                      |||||++|+|++++++|+++|+||||+||+++++|||+||+||+|+++|+.+++++++|++++|++.+++.|||+|||||
T Consensus       115 LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~LYGly  194 (668)
T PF04388_consen  115 LLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTRLYGLY  194 (668)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhhhccCCcccccccccC
Q psy3040         161 PCTFLSYLKQEYNMRCDNVNACNVFNHTI  189 (189)
Q Consensus       161 P~NFl~fLR~~y~~k~~~~~~~~~f~~~~  189 (189)
                      ||||++|||++|+++ +|   .++|+|+|
T Consensus       195 P~NF~~flr~~y~~~-~~---~~~~~~~i  219 (668)
T PF04388_consen  195 PCNFLSFLRQHYSSK-EN---FDIFQEVI  219 (668)
T ss_pred             cchHHHHHHHHHhcc-cC---hhhHHHHH
Confidence            999999999999998 88   88899875

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.95  E-value=0.26  Score=39.88  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=81.4

Q ss_pred             HHHHHHHhhcCCCch---hHHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHH
Q psy3040          20 RAVDVLVIIREPHDK---FLFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEV   94 (189)
Q Consensus        20 ~~~~iL~~~g~~~pk---~l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv   94 (189)
                      |+.-++.....++|.   .+...+-.++..+  .-|..|+..|.+++....-    -.+.. +|..+++|+ .|.+..+-
T Consensus         7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~-l~~~~l~~l-~D~~~~Ir   80 (178)
T PF12717_consen    7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQ-LFSRILKLL-VDENPEIR   80 (178)
T ss_pred             HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhh-hhHHHHHHH-cCCCHHHH
Confidence            455566666666665   5666777777754  6899999999999886433    33455 889999998 89999999


Q ss_pred             HHHHHHHHHHhcc-cccchhhhHHHHHHHHHHHhccc
Q psy3040          95 ISALLVLNILLPI-IPGLIGSHLTDIFEVFSRLAAWN  130 (189)
Q Consensus        95 ~~al~~LimLLP~-ip~~l~~~Lp~Lf~If~Rl~~W~  130 (189)
                      ..|..++.-+.-. -|+.+.+++|++...+.....|.
T Consensus        81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~  117 (178)
T PF12717_consen   81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHP  117 (178)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccc
Confidence            9999999998888 88999999999988776655554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.45  E-value=1.4  Score=35.42  Aligned_cols=96  Identities=22%  Similarity=0.315  Sum_probs=73.0

Q ss_pred             CCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccc
Q psy3040          31 PHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPII  108 (189)
Q Consensus        31 ~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~i  108 (189)
                      ..=..+.++++..+++  +..|-.++.|++..++..+ |---+.+..+.+..+++.|+.+.+..+..+|+.++..++-.+
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            3446788999999998  7899999999999988654 333323333489999999999999999999999888887665


Q ss_pred             ccc-------hhhhHHHHHHHHHHHh
Q psy3040         109 PGL-------IGSHLTDIFEVFSRLA  127 (189)
Q Consensus       109 p~~-------l~~~Lp~Lf~If~Rl~  127 (189)
                      -..       ..+.+|.+..-+..+.
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~  125 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLL  125 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHH
Confidence            543       3467777776666654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=85.39  E-value=5  Score=29.87  Aligned_cols=77  Identities=21%  Similarity=0.239  Sum_probs=59.3

Q ss_pred             hHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHhc
Q psy3040          49 TRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFSRLAA  128 (189)
Q Consensus        49 ~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~Rl~~  128 (189)
                      +|..+|+=|.++...=+..+.+..++  +++.+|+|+. |.|.-|=-.|.-+|..+.=.....+-++++++|+...|+..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~--Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE--ILPPVLKCFD-DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH--HHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            57778888887766666665444432  7888888864 88888888888888888877777788899999999999764

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.14  E-value=15  Score=27.14  Aligned_cols=71  Identities=20%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             CchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Q psy3040          47 PSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGLIGSHLTDIFEVFS  124 (189)
Q Consensus        47 ~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~l~~~Lp~Lf~If~  124 (189)
                      ++-|-.+|.+|.++|+++.   ..+.+-+ -.-.++.....|.|+-+--.|+-++..|.-..|..   .+|.|.+.|.
T Consensus        17 ~PvRa~gL~~L~~Li~~~~---~~~~~~~-~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~---vl~~L~~~y~   87 (92)
T PF10363_consen   17 PPVRAHGLVLLRKLIESKS---EPVIDIP-KILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE---VLPILLDEYA   87 (92)
T ss_pred             cchHHHHHHHHHHHHHcCC---cchhhHH-HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH---HHHHHHHHHh
Confidence            5799999999999999887   4444555 44445566677888888888988888887777763   4555555554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.01  E-value=11  Score=33.10  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             HHHHHhhcCCCchhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccCh-----hHHHHHHHHhccCccHHHHHH
Q psy3040          22 VDVLVIIREPHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHP-----TLMKDLLKILKTESDMVEVIS   96 (189)
Q Consensus        22 ~~iL~~~g~~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~-----~L~~~LLkcL~~D~s~~vv~~   96 (189)
                      .+++..-|+..-+-|++.++..-.+++..--+|++++.+++..|.....+.+..     ..|..+++.+..+ |..+...
T Consensus        46 ~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~  124 (312)
T PF03224_consen   46 RELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLK  124 (312)
T ss_dssp             ----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHH
T ss_pred             HHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHH
Confidence            347777788888888888888867788999999999999999998865555422     1688899955555 8888899


Q ss_pred             HHHHHHHHhcccccchh----hhHHHHHHHHHH
Q psy3040          97 ALLVLNILLPIIPGLIG----SHLTDIFEVFSR  125 (189)
Q Consensus        97 al~~LimLLP~ip~~l~----~~Lp~Lf~If~R  125 (189)
                      |..+++.++..-+....    ..++.+|.....
T Consensus       125 a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~  157 (312)
T PF03224_consen  125 AAFILTSLLSQGPKRSEKLVKEALPKLLQWLSS  157 (312)
T ss_dssp             HHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence            99999999999887655    467777666554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.47
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	90.18
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	88.27
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	87.49

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=91.47  E-value=0.69  Score=36.68  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=66.8

Q ss_pred             CCchhHHHHHHhhccCCchHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040          31 PHDKFLFDRVAETLRSPSTRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG  110 (189)
Q Consensus        31 ~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~  110 (189)
                      +-|..+++.+++  .+...|..++.-|+.++...|.....- -.. +++.|.+.+..|.+..+...|+.++..+......
T Consensus        15 ~l~~~l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~-i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~   90 (242)
T 2qk2_A           15 KMPKDFYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGE-YGA-LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK   90 (242)
T ss_dssp             GSCTTHHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCC-CHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             cCCHHHHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCC-HHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence            345567777653  355799999999999999866432111 134 7777777776699999999999999999877776


Q ss_pred             chhhhHHHHHHHHHH
Q psy3040         111 LIGSHLTDIFEVFSR  125 (189)
Q Consensus       111 ~l~~~Lp~Lf~If~R  125 (189)
                      .+.+|.+.++.....
T Consensus        91 ~~~~~~~~ilp~ll~  105 (242)
T 2qk2_A           91 RFSNYASACVPSLLE  105 (242)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            677777777666655

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=90.18  E-value=2  Score=35.09  Aligned_cols=113  Identities=12%  Similarity=0.199  Sum_probs=81.2

Q ss_pred             hhhHHHHHHhccCcH---HHHHHHHhhcC--------CCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCc---h
Q psy3040           5 LVNGLVDYFLASNSL---RAVDVLVIIRE--------PHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTW---L   68 (189)
Q Consensus         5 l~~~lvdy~~~t~s~---~~~~iL~~~g~--------~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~---l   68 (189)
                      ++..+++.+-+....   .+...|.++-+        ++...+++.+-+.+..  |..|.+++..++.++...+..   +
T Consensus       105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l  184 (249)
T 2qk1_A          105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL  184 (249)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence            567777877554321   12333333333        2256788888888874  679999999999999988753   2


Q ss_pred             hhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhcccccc-hhhhHHHH
Q psy3040          69 YKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPGL-IGSHLTDI  119 (189)
Q Consensus        69 ~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~-l~~~Lp~L  119 (189)
                      -.-..-+ +++.+.+++ .|++..+=..|.-++..+.-.+... +.+++++|
T Consensus       185 ~~~l~~~-iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          185 QRYLKDE-VVPIVIQIV-NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             HHHHTTT-HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred             HHHHHHH-HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            2222234 888888888 6899999999999999988888875 88888875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=88.27  E-value=1.3  Score=36.24  Aligned_cols=90  Identities=11%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CCchhHHHHHHhhccCCchHhhHHHHHHH-HHhcCCCchhhhcc-ChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccc
Q psy3040          31 PHDKFLFDRVAETLRSPSTRLGALTLLGH-IVQRQPTWLYKIMS-HPTLMKDLLKILKTESDMVEVISALLVLNILLPII  108 (189)
Q Consensus        31 ~~pk~l~~~ln~~~~~~~~Rl~~L~LL~~-~v~~qp~~l~~I~~-t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~i  108 (189)
                      +=|++|.+.+..  .+...|.+++.=|+. ++...|.-.....+ .. +++.|.+++..|.++.++..|+.++..+--..
T Consensus        16 kl~~~f~~~l~s--~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l   92 (249)
T 2qk1_A           16 KLPKDFQERITS--SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-LLGIYGHIIQKDANIQAVALAAQSVELICDKL   92 (249)
T ss_dssp             GSCTTHHHHHTC--SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hCChhHHHHhhc--CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence            556788888743  467899999999999 88765542221233 35 88899999989999999999998887765434


Q ss_pred             -----c-cchhhhHHHHHHHH
Q psy3040         109 -----P-GLIGSHLTDIFEVF  123 (189)
Q Consensus       109 -----p-~~l~~~Lp~Lf~If  123 (189)
                           . ......||.+++.+
T Consensus        93 ~~~~f~~~y~~~llp~ll~~l  113 (249)
T 2qk1_A           93 KTPGFSKDYVSLVFTPLLDRT  113 (249)
T ss_dssp             CTTTSCHHHHHHHHHHHHHGG
T ss_pred             ccccccHHHHHHHHHHHHHHH
Confidence                 3 44445555555443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=87.49  E-value=2.2  Score=33.65  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=74.2

Q ss_pred             hhhHHHHHHhccCcH---HHHHHHHhhcC-CCchhHHHHHHhhccC--CchHhhHHHHHHHHHhcCCCc-h-hhhccChh
Q psy3040           5 LVNGLVDYFLASNSL---RAVDVLVIIRE-PHDKFLFDRVAETLRS--PSTRLGALTLLGHIVQRQPTW-L-YKIMSHPT   76 (189)
Q Consensus         5 l~~~lvdy~~~t~s~---~~~~iL~~~g~-~~pk~l~~~ln~~~~~--~~~Rl~~L~LL~~~v~~qp~~-l-~~I~~t~~   76 (189)
                      ++..+++.+-+++..   .+.+.|.++.+ ...+.++..+-+.+..  |.-|..++..++.++.+..+. . ..-. .. 
T Consensus        99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~-  176 (242)
T 2qk2_A           99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KL-  176 (242)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HH-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HH-
Confidence            566666666554321   23333443333 3456778888888774  568999999999998876432 1 1111 24 


Q ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHhcccccc-hhhhHHHH
Q psy3040          77 LMKDLLKILKTESDMVEVISALLVLNILLPIIPGL-IGSHLTDI  119 (189)
Q Consensus        77 L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~~-l~~~Lp~L  119 (189)
                      +++.|.++| .|.+..+=..|..++..+.-.+... +.+++++|
T Consensus       177 l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L  219 (242)
T 2qk2_A          177 LTTSLVKTL-NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV  219 (242)
T ss_dssp             HHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred             HHHHHHHHh-cCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence            888888887 4888888888888888877777765 66777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	84.78
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	84.0
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	81.42

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.45  Score=43.01  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=80.4

Q ss_pred             HHHHHHhhcCCCchhHHHHHHhhccCC--chHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHH
Q psy3040          21 AVDVLVIIREPHDKFLFDRVAETLRSP--STRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISAL   98 (189)
Q Consensus        21 ~~~iL~~~g~~~pk~l~~~ln~~~~~~--~~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al   98 (189)
                      +.++|.+.....|+.++..+.+++..+  ..|..++..+..++...+...-.. =.+ ++..++++| .|.|..+-..|+
T Consensus       948 ~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~-l~~-li~~ll~~l-~d~~~~vR~~al 1024 (1207)
T d1u6gc_         948 VAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL-LKN-CIGDFLKTL-EDPDLNVRRVAL 1024 (1207)
T ss_dssp             HHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHH-HHH-HSTTTHHHH-SSSSTHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHH-HHH-HHHHHHHHh-CCCCHHHHHHHH
Confidence            446666677788899999999999865  478888888888888777653322 233 667777775 488999999999


Q ss_pred             HHHHHHhcccccchhhhHHHHHHHHHHH
Q psy3040          99 LVLNILLPIIPGLIGSHLTDIFEVFSRL  126 (189)
Q Consensus        99 ~~LimLLP~ip~~l~~~Lp~Lf~If~Rl  126 (189)
                      .++..++=.-|..+.+||+.+.......
T Consensus      1025 ~~l~~~~~~~p~li~~~l~~llp~l~~~ 1052 (1207)
T d1u6gc_        1025 VTFNSAAHNKPSLIRDLLDTVLPHLYNE 1052 (1207)
T ss_dssp             HHHHHHHHHCGGGTGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            9999999999988899999888766543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=4.3  Score=31.11  Aligned_cols=88  Identities=16%  Similarity=0.249  Sum_probs=56.6

Q ss_pred             chhHHHHHHhhccCCc--hHhhHHHHHHHHHhcCCCchhhhccChhHHHHHHHHhccCccHHHHHHHHHHHHHHhccccc
Q psy3040          33 DKFLFDRVAETLRSPS--TRLGALTLLGHIVQRQPTWLYKIMSHPTLMKDLLKILKTESDMVEVISALLVLNILLPIIPG  110 (189)
Q Consensus        33 pk~l~~~ln~~~~~~~--~Rl~~L~LL~~~v~~qp~~l~~I~~t~~L~~~LLkcL~~D~s~~vv~~al~~LimLLP~ip~  110 (189)
                      -..++..+.+.+.+++  .|-.++..||.+...-..-..+-.-.. +++.++++++ |.+..|-..|+.++.-+...+|.
T Consensus       363 ~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~-i~~~l~~~l~-d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         363 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ-AMPTLIELMK-DPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTT-HHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHH-HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhhc
Confidence            3456667777777654  788899999998643111111111234 7777777775 78888889998888877666654


Q ss_pred             c--hhhhHHHHHHH
Q psy3040         111 L--IGSHLTDIFEV  122 (189)
Q Consensus       111 ~--l~~~Lp~Lf~I  122 (189)
                      .  -..+++-++..
T Consensus       441 ~~~~~~~l~~ll~~  454 (458)
T d1ibrb_         441 AAINDVYLAPLLQC  454 (458)
T ss_dssp             GCCSTTTHHHHHHH
T ss_pred             ccchhhHHHHHHHH
Confidence            3  23556655544