Psyllid ID: psy3048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSVAKRNSTA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccEEEEEccccHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEEccccccccccccccHHHcccccccccccccccccccccccEEEEEEccHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccHHHcHHHHHHHHHHEEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHcccEEEEEEEHHcccccccHHHHHHHccHHEccccccccccEEEEEccccEEEEcccHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHcHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEEEEEccccHHHHHHHHHHHHcccEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MVSILAAKRKKILdltsagptvsendIKSRLVAYAsdqsnssveksaiigdvpvrqlrsddngvlRGDALLTAVKEDLAKglipcclvatlgttgtcafdnleelgpicqeynIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNAnhltntfftdrvylkhtdapmntqspdytVMNWLGkalglpeeflncskgpgggviqhwqTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVekddrfelvcppsmglvcfrlkgdndLTNQLYERLMSHKQIYIIKAsfqgrpflrfvvtspetnqcdvAFAWneishqssemnlprgsssvakrnsta
Flexible Loop (DISEMBL)
mvsilaakrkkildltsagptvsendIKSRLVAYAsdqsnssveksaiigdvpvrqlrsddngVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIShqssemnlprgsssvakrnsta
Low Complexity Region (SEG)
MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSVAKRNSTA
Disordered region (IsUnstruct)
***********************************************IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI***********************
Disordered Region (DISOPRED)
MVSILAAKRKKILDLTSAGP**S*NDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE*****************
Disordered Region (DISEMBL)
********RKKILDLTSAGPTVSENDIKSRLVAYA*********KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ********************
Disordered Region (DISPRO)
MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSVAKRNSTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
P18486	510	Alpha-methyldopa hypersen	no	N/A	0.907	0.652	0.468	5e-98
O96569	439	Alpha-methyldopa hypersen	N/A	N/A	0.866	0.724	0.472	3e-96
P27718	487	Aromatic-L-amino-acid dec	yes	N/A	0.907	0.683	0.448	2e-85
P80041	486	Aromatic-L-amino-acid dec	yes	N/A	0.850	0.641	0.455	3e-85
O88533	480	Aromatic-L-amino-acid dec	yes	N/A	0.871	0.666	0.450	1e-84
P20711	480	Aromatic-L-amino-acid dec	no	N/A	0.871	0.666	0.450	1e-84
O96571	403	Aromatic-L-amino-acid dec	N/A	N/A	0.869	0.791	0.437	1e-84
O96567	510	Aromatic-L-amino-acid dec	N/A	N/A	0.871	0.627	0.443	3e-84
P05031	510	Aromatic-L-amino-acid dec	no	N/A	0.871	0.627	0.440	5e-84
P14173	480	Aromatic-L-amino-acid dec	yes	N/A	0.871	0.666	0.444	6e-84

>sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2

 Score =  358 bits (918), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Participates in catecholamine metabolism. It plays a vital role in cuticle development.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|O96569|L2AM_DROLE Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila lebanonensis GN=amd PE=3 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 164/347 (47%), Positives = 236/347 (68%), Gaps = 29/347 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + +  + ++ P +SE+DI+ +LVAY+SDQSNS +EK+ ++  +P++ L + 
Sbjct: 82  LVAVLAAREQAVCRVRASHPELSESDIRGKLVAYSSDQSNSCIEKAGVLAAMPIKLLPAG 141

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ +LRG AL +A+++D+  GLIP   +ATLGTTGTCA+D+++ L  +C++YN+WLHVDA
Sbjct: 142 EDLILRGAALRSAIEQDVTAGLIPVICIATLGTTGTCAYDDVDSLATVCEQYNVWLHVDA 201

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L+RGLE VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 202 AYAGGAFALDECSELRRGLERVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 261

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      TQ PD+                            +HWQ PL RRFRALK+W
Sbjct: 262 LKH-KYEGQTQIPDF----------------------------RHWQIPLGRRFRALKVW 292

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+A++RKHI LAKKF   V  D RFELV P ++GLVCFR KG+N++T QL
Sbjct: 293 ITFRTLGAEGLRAHVRKHIELAKKFEVFVLADARFELVAPRALGLVCFRAKGENEITAQL 352

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ 347
            +RLM  K+IY++KA  +G+ FLRF V   +    D+ FAW EI  Q
Sbjct: 353 LQRLMERKKIYMVKAEHRGQLFLRFAVCGMDPKPSDIEFAWTEIGTQ 399

Participates in catecholamine metabolism. It plays a vital role in cuticle development.

Drosophila lebanonensis (taxid: 7225)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2

 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/366 (44%), Positives = 216/366 (59%), Gaps = 33/366 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K    L +A P + +  I  +LVAYASDQ++SSVEK+ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGGVRLKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
               +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E  +WLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEGLWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPVY 332

Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           L+H+  D+ + T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LRHSHQDSGLIT---DY----------------------------RHWQLPLGRRFRSLK 361

Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+  F  LV +D RFE+     +GLVCFRLKG N L  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHAFEALVRQDTRFEICAEVILGLVCFRLKGSNKLNE 421

Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSS 358
            L E + S K+I+++  S + R  LRF + S       V  AW  I   ++ +   +G  
Sbjct: 422 ALLESINSAKKIHLVPCSLRDRFVLRFAICSRTVELAHVQLAWEHIQEMAATVLRAQGEE 481

Query: 359 SVAKRN 364
               +N
Sbjct: 482 KAEIKN 487

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2

 Score =  315 bits (808), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/347 (45%), Positives = 213/347 (61%), Gaps = 35/347 (10%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K +  L +A P +++  +  +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
               +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI---QHWQTPLSRRFRAL 237
           LKH+                                  G G+I   +HWQ PL RRFR+L
Sbjct: 333 LKHSHQ--------------------------------GSGLITDYRHWQLPLGRRFRSL 360

Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLT 297
           K+W   R YG+KGLQAY+RKH+ L+ +F   V +D RFE+    ++GLVCFRLKG + L 
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN 420

Query: 298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
             L ER+ S ++I+++    +G+  LRF + S +     V  AW  I
Sbjct: 421 EALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/353 (45%), Positives = 215/353 (60%), Gaps = 33/353 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K I  L +A P  ++  I  +LVAY SDQ++SSVE++ +IG + ++ + SD
Sbjct: 153 LVALLAARTKVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC +  +WLH+DA
Sbjct: 213 GNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ +L  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVY 332

Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           LKH+  D+   T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGFIT---DY----------------------------RHWQIPLGRRFRSLK 361

Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+ +F  LV +D RFE+     +GLVCFRLKG N+L  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNELNE 421

Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            L +R+ S K+I+++    + +  LRF V +       V  AW  IS  +S +
Sbjct: 422 TLLQRINSAKKIHLVPCRLRDKFVLRFAVCARTVESAHVQLAWEHISDLASSV 474

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/353 (45%), Positives = 217/353 (61%), Gaps = 33/353 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K I  L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC + +IWLHVDA
Sbjct: 213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D  Y
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332

Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           LKH+  D+ + T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361

Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+ +F  LV +D RFE+     +GLVCFRLKG N +  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNE 421

Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            L +R+ S K+I+++    + +  LRF + S       V  AW  I   ++++
Sbjct: 422 ALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADV 474

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O96571|DDC_DROLE Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis GN=Ddc PE=3 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 220/350 (62%), Gaps = 31/350 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++L AK KK+ ++    P   ++ I S+LV Y+S Q++SSVE++ ++G V +R + +D
Sbjct: 79  LVALLGAKAKKMKEVRETHPDWDDHTIISKLVGYSSAQAHSSVERAGLLGGVKLRSVPAD 138

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           +   LRG+AL  A+++DLA GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct: 139 EQNRLRGEALEKAIEQDLADGLIPFYAVVTLGTTNSCAFDRLDECGPVANKHNVWVHVDA 198

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PEY HL +G+E  DSF FN HKW+L N DCSAMW+K+ + + N F  D +Y
Sbjct: 199 AYAGSAFICPEYRHLMKGIETADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 258

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH    M   +PDY                            +HWQ P+ RRFRALKLW
Sbjct: 259 LKHD---MQGSAPDY----------------------------RHWQIPIGRRFRALKLW 287

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++ LQA++R+H + A++FA+L  +D RFEL    +MGLVCFRLKG N+    L
Sbjct: 288 FVLRLYGVENLQAHIRRHCTYAQQFAELCVQDSRFELAAEVNMGLVCFRLKGSNERNEAL 347

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE 350
            +R+    +I+++ A  +   FLR  V S  T   D+ ++W E+S  + E
Sbjct: 348 LKRINGRGKIHLVPAKIRDVYFLRMAVCSRFTRPEDMEYSWQEVSAAADE 397

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Drosophila lebanonensis (taxid: 7225)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2

 Score =  312 bits (800), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 218/352 (61%), Gaps = 32/352 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++L AK KK+ ++    P   E+ I  +LV Y SDQ++SSVE++ ++G V +R ++S+
Sbjct: 188 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE 247

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +RG AL  A+++DLA+GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct: 248 -NHRMRGAALEKAIEQDLAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 306

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PEY HL +G+E  DSF FN HKW+L N DCSAMW+K+ + + N F  D +Y
Sbjct: 307 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 366

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH    M   +PDY                            +HWQ PL RRFRALKLW
Sbjct: 367 LKHD---MQGSAPDY----------------------------RHWQIPLGRRFRALKLW 395

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++ LQA++R+H + AK+F DL   D RFEL    +MGLVCFRLKG N+    L
Sbjct: 396 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 455

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN 352
            +R+     I+++ A  +   FLR  + S  T   D+ ++W E+S  + EM 
Sbjct: 456 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 507

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span.

Drosophila simulans (taxid: 7240)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4

 Score =  311 bits (797), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 155/352 (44%), Positives = 218/352 (61%), Gaps = 32/352 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++L AK KK+ ++    P   E+ I  +LV Y SDQ++SSVE++ ++G V +R ++S+
Sbjct: 188 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE 247

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +RG AL  A+++D+A+GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct: 248 -NHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 306

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PEY HL +G+E  DSF FN HKW+L N DCSAMW+K+ + + N F  D +Y
Sbjct: 307 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 366

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH    M   +PDY                            +HWQ PL RRFRALKLW
Sbjct: 367 LKHD---MQGSAPDY----------------------------RHWQIPLGRRFRALKLW 395

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++ LQA++R+H + AK+F DL   D RFEL    +MGLVCFRLKG N+    L
Sbjct: 396 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 455

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN 352
            +R+     I+++ A  +   FLR  + S  T   D+ ++W E+S  + EM 
Sbjct: 456 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 507

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1

 Score =  311 bits (796), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 157/353 (44%), Positives = 214/353 (60%), Gaps = 33/353 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K I  L +A P +++  +  +LVAY SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +R  AL  A++ D A GLIP  +V TLGTT  C+FDNL E+GPIC +  +WLH+DA
Sbjct: 213 GNYSMRAAALREALERDKAAGLIPFFVVVTLGTTSCCSFDNLLEVGPICNQEGVWLHIDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ +L  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTEAFNMDPVY 332

Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           L+H+  D+ + T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LRHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361

Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+ +F  LV +D RFE+     +GLVCFRLKG N L  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVKLSHEFESLVRQDPRFEICTEVILGLVCFRLKGSNQLNE 421

Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            L +R+ S K+I+++    + +  LRF V S       V  AW  I   +S +
Sbjct: 422 TLLQRINSAKKIHLVPCRLRDKFVLRFAVCSRTVESAHVQLAWEHIRDLASSV 474

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
383858387	512	PREDICTED: aromatic-L-amino-acid decarbo	0.871	0.625	0.512	1e-100
193603599	517	PREDICTED: aromatic-L-amino-acid decarbo	0.888	0.630	0.501	1e-100
350418517	512	PREDICTED: alpha-methyldopa hypersensiti	0.869	0.623	0.491	3e-98
195580089	510	alpha methyl dopa-resistant [Drosophila	0.907	0.652	0.471	1e-96
60677853	510	RE33280p [Drosophila melanogaster]	0.907	0.652	0.468	3e-96
260166753	510	RE22070p [Drosophila melanogaster]	0.907	0.652	0.468	3e-96
24585135	510	alpha methyl dopa-resistant, isoform B [	0.907	0.652	0.468	3e-96
17136190	510	alpha methyl dopa-resistant, isoform A [	0.907	0.652	0.468	3e-96
270006966	501	hypothetical protein TcasGA2_TC013401 [T	0.869	0.636	0.501	3e-96
194879744	510	amd [Drosophila erecta] gi|190657479|gb|	0.877	0.631	0.481	4e-96

>gi|383858387|ref|XP_003704683.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Megachile rotundata]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/351 (51%), Positives = 232/351 (66%), Gaps = 31/351 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V +LAAK +    L    P   E  IKS+LVAY SDQSNSSVEK+ I+  V ++ L +D
Sbjct: 153 LVCLLAAKEQTTRRLKHLHPDWDEASIKSKLVAYTSDQSNSSVEKAGILASVTMKLLPAD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           D  V RG+ LL A+KEDL KGLIPCC++ATLGTTGTCAFDNLEELGPIC EYN+WLHVDA
Sbjct: 213 DKCVFRGETLLKAIKEDLVKGLIPCCVIATLGTTGTCAFDNLEELGPICNEYNVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG+A + PEY +L  G+EY DSF  N HKWLL N DCSA+WVK++  L   F  DR+Y
Sbjct: 273 AYAGAAFVCPEYRYLMSGVEYADSFNINPHKWLLVNFDCSALWVKDSRRLVEAFSVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           L H    +   +PDY                            ++WQ PL RRFR+LKLW
Sbjct: 333 LAHDKQGL---APDY----------------------------RNWQIPLGRRFRSLKLW 361

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++GLQ ++R  I  A+ F + V+ D RFELV   SMGL+CFR+KGDN LT +L
Sbjct: 362 FVLRLYGVEGLQQHIRHTIKFAEMFEEYVKSDSRFELVTDRSMGLICFRMKGDNQLTKEL 421

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
             RL + K+IY++ A++  +  +RFV+ S  T + D+ FAWNEI+ Q++E+
Sbjct: 422 LNRLTAEKKIYVVAATYCEKLVVRFVICSRLTTEEDIIFAWNEITKQATEI 472

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193603599|ref|XP_001950143.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Acyrthosiphon pisum]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/355 (50%), Positives = 240/355 (67%), Gaps = 29/355 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
            V +LAAK +    + +  P++++ +IK++LVAY SDQSNSSVEK+ ++G +P+R L++D
Sbjct: 153 FVCLLAAKDRTTKRIKALDPSMTDGEIKAKLVAYTSDQSNSSVEKAGLLGSMPMRMLKAD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            +G + G  L  A+ ED+A+GLIPC +VATLGTTGTCAFD LEELGPIC E +IWLHVDA
Sbjct: 213 KSGRMTGPILAEAMAEDIARGLIPCYVVATLGTTGTCAFDCLEELGPICNENDIWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG+A +LPEY +L  G+++ DSF  N HKWLL N DCSA+WVKNA +L + F  DRVY
Sbjct: 273 AYAGAAFVLPEYRYLMAGVQFADSFDVNLHKWLLVNFDCSALWVKNATYLVDAFNVDRVY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH+    + Q PDY                            +HWQ PL RRFR+LK+W
Sbjct: 333 LKHSYQSQDPQVPDY----------------------------RHWQIPLGRRFRSLKMW 364

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++GLQA+++K + LA  F  LV +D RFE++   +MGLVCFRLKG+ND T  L
Sbjct: 365 FVLRLYGVEGLQAHIKKQVHLADLFGKLVNQDPRFEVITV-TMGLVCFRLKGNNDWTKSL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR 355
           YERLM+  QIY++  + + +  +RFVV S  T + DV FAW+EI  Q+  ++  R
Sbjct: 424 YERLMASGQIYLVTTTVRSKLVIRFVVCSRLTEEVDVQFAWDEIRGQADRVDSER 478

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418517|ref|XP_003491883.1| PREDICTED: alpha-methyldopa hypersensitive protein-like [Bombus impatiens]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/352 (49%), Positives = 233/352 (66%), Gaps = 33/352 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++L AK +    +    P + E  IK++LVAY SDQSNSS+EK  I+  +PVR L +D
Sbjct: 153 LIALLTAKEQTTRRMKHLHPDLDEATIKNKLVAYGSDQSNSSIEKGGILASIPVRLLPTD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           D  VLRG+ LL AVKEDL KGLIPCC+++TLGTTGTCAFD L+ELGPIC+EYN+WLHVDA
Sbjct: 213 DKCVLRGETLLKAVKEDLEKGLIPCCVISTLGTTGTCAFDKLDELGPICKEYNMWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG+A + PEY +L  G+EY DSF  NAHKW+L N DCS  WVK++  L  TF  +R+Y
Sbjct: 273 AYAGAAFICPEYRYLMSGVEYSDSFVVNAHKWMLVNFDCSLFWVKDSRKLIETFNVERIY 332

Query: 181 LKHT-DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL 239
           L+H    P+    PDY                            +HWQ  L RRFR+LK+
Sbjct: 333 LEHNKKGPV----PDY----------------------------RHWQISLGRRFRSLKI 360

Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQ 299
           W  LR YG +G++ Y+R  I +A+ F + V+ DDRFEL    SM LVCFRL+GD+ LT +
Sbjct: 361 WFVLRIYGSEGIEQYIRNMIQMAEMFENYVKSDDRFELATERSMSLVCFRLRGDDRLTKE 420

Query: 300 LYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
           L +RL   +++Y+I A+ +GR  +RFVV S  + + D+ FAW EI+ Q++E+
Sbjct: 421 LIDRLTERRKLYVIAATHRGRLIVRFVVGSRISREEDITFAWKEITSQATEI 472

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195580089|ref|XP_002079888.1| alpha methyl dopa-resistant [Drosophila simulans] gi|194191897|gb|EDX05473.1| alpha methyl dopa-resistant [Drosophila simulans]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 172/365 (47%), Positives = 242/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + +     + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVASYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDND+T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNDITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60677853|gb|AAX33433.1| RE33280p [Drosophila melanogaster]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260166753|gb|ACX32988.1| RE22070p [Drosophila melanogaster]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANRVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585135|ref|NP_724162.1| alpha methyl dopa-resistant, isoform B [Drosophila melanogaster] gi|22946805|gb|AAF53759.2| alpha methyl dopa-resistant, isoform B [Drosophila melanogaster] gi|201066153|gb|ACH92486.1| FI09231p [Drosophila melanogaster]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136190|ref|NP_476592.1| alpha methyl dopa-resistant, isoform A [Drosophila melanogaster] gi|17380407|sp|P18486.2|L2AM_DROME RecName: Full=Alpha-methyldopa hypersensitive protein gi|7298541|gb|AAF53760.1| alpha methyl dopa-resistant, isoform A [Drosophila melanogaster] gi|374858090|gb|AEZ68802.1| FI18657p1 [Drosophila melanogaster]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 243/365 (66%), Gaps = 32/365 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct: 213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++   +   S+
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDL---QAEQSL 480

Query: 361 AKRNS 365
             R S
Sbjct: 481 VARKS 485

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006966|gb|EFA03414.1| hypothetical protein TcasGA2_TC013401 [Tribolium castaneum]

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/351 (50%), Positives = 229/351 (65%), Gaps = 32/351 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
            V++LAAK K + D+    P +SE +IK +LVAY+S+QSNSSVEKS ++G +P+R L  D
Sbjct: 153 FVALLAAKEKTVRDIQKLHPELSEAEIKGKLVAYSSNQSNSSVEKSGLLGSMPMRLLPVD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           + G LRGDAL  A+++D  +GLIPC +VA LGTT TCAFD LEELGP+CQ  N+WLH+DA
Sbjct: 213 EKGQLRGDALEEAIRKDKEQGLIPCYVVANLGTTPTCAFDKLEELGPVCQRENVWLHIDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA   PEY +L +G+EY DSF FN HKW+L N DCSAMWV++A HL   F  +R+Y
Sbjct: 273 AYAGSAFACPEYRYLMKGVEYADSFNFNPHKWMLVNFDCSAMWVRDARHLVEAFNVERIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LK     +   +P+Y                            +HWQ  L RRFRALKLW
Sbjct: 333 LKDQHKGL---APEY----------------------------RHWQISLGRRFRALKLW 361

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG+ G+Q ++R  ISLA++F +LV  D RFE VC  SMGLVCF+LKGD+ LT +L
Sbjct: 362 FVLRIYGVDGIQKHIRHQISLAQRFEELVRGDQRFE-VCSSSMGLVCFKLKGDDALTVKL 420

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            ER+   K+IY+I   F     +RF V S  T +  V +AWNE + Q+ E+
Sbjct: 421 LERVQQRKKIYVIAGHFGESHVIRFAVCSRLTEKRHVDYAWNEFASQADEI 471

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194879744|ref|XP_001974292.1| amd [Drosophila erecta] gi|190657479|gb|EDV54692.1| amd [Drosophila erecta]

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 169/351 (48%), Positives = 236/351 (67%), Gaps = 29/351 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ + +     + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct: 153 LVAVLAAREQAVASYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++ VLRGD L  A+ ED+A G IP   VATLGTTGTCA+D++E L  +C+EY +WLHVDA
Sbjct: 213 EDFVLRGDTLREAIGEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEYKVWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct: 273 AYAGGAFALDECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH      +Q PD+                            +HWQ PL RRFRALK+W
Sbjct: 333 LKHKHEG-QSQIPDF----------------------------RHWQIPLGRRFRALKVW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
           +T R+ G +GL+ ++RKHI LAK+F  LV KD RFELV P ++GLVCFR KGDN++T QL
Sbjct: 364 ITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDNEITTQL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            +RLM  K+IY++KA   GR FLRFVV   +T   D+ FAW EI  Q +++
Sbjct: 424 LQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWKEIESQLTDL 474

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
FB|FBgn0000075	510	amd "alpha methyl dopa-resista	0.528	0.380	0.487	1.1e-91
UNIPROTKB|O96569	439	amd "Alpha-methyldopa hypersen	0.528	0.441	0.487	3e-89
UNIPROTKB|P80041	486	DDC "Aromatic-L-amino-acid dec	0.501	0.378	0.543	1.9e-81
UNIPROTKB|P27718	487	DDC "Aromatic-L-amino-acid dec	0.501	0.377	0.543	4e-81
MGI|MGI:94876	480	Ddc "dopa decarboxylase" [Mus	0.501	0.383	0.527	8.3e-81
FB|FBgn0000422	510	Ddc "Dopa decarboxylase" [Dros	0.520	0.374	0.492	8.3e-81
UNIPROTKB|P20711	480	DDC "Aromatic-L-amino-acid dec	0.501	0.383	0.543	2.2e-80
UNIPROTKB|E7EU95	402	DDC "Aromatic-L-amino-acid dec	0.501	0.457	0.543	2.2e-80
RGD|2494	480	Ddc "dopa decarboxylase (aroma	0.501	0.383	0.516	3.6e-80
UNIPROTKB|F1PFV0	480	DDC "Uncharacterized protein"	0.498	0.381	0.513	9.5e-80

FB|FBgn0000075 amd "alpha methyl dopa-resistant" [Drosophila melanogaster (taxid:7227)]

 Score = 531 (192.0 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 95/195 (48%), Positives = 143/195 (73%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ + + +   + P +SE++++ RLVAY+SDQSNS +EK+ ++  +P+R L + 
Sbjct:   153 LVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPAG 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
             ++ VLRGD L  A++ED+A G IP   VATLGTTGTCA+D++E L  +C+E+ +WLHVDA
Sbjct:   213 EDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAG A  L E + L++GL+ VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct:   273 AYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 332

Query:   181 LKHTDAPMNTQSPDY 195
             LKH     + Q PD+
Sbjct:   333 LKHKHEGQS-QIPDF 346

GO:0040003 "chitin-based cuticle development" evidence=NAS;IMP

GO:0006584 "catecholamine metabolic process" evidence=NAS;IMP

GO:0042417 "dopamine metabolic process" evidence=NAS

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0019239 "deaminase activity" evidence=IDA

GO:0016831 "carboxy-lyase activity" evidence=IDA

UNIPROTKB|O96569 amd "Alpha-methyldopa hypersensitive protein" [Scaptodrosophila lebanonensis (taxid:7225)]

 Score = 537 (194.1 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 95/195 (48%), Positives = 146/195 (74%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ + +  + ++ P +SE+DI+ +LVAY+SDQSNS +EK+ ++  +P++ L + 
Sbjct:    82 LVAVLAAREQAVCRVRASHPELSESDIRGKLVAYSSDQSNSCIEKAGVLAAMPIKLLPAG 141

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
             ++ +LRG AL +A+++D+  GLIP   +ATLGTTGTCA+D+++ L  +C++YN+WLHVDA
Sbjct:   142 EDLILRGAALRSAIEQDVTAGLIPVICIATLGTTGTCAYDDVDSLATVCEQYNVWLHVDA 201

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAG A  L E + L+RGLE VDS  FN HK++L N DCSAMW+++AN + ++F  DR+Y
Sbjct:   202 AYAGGAFALDECSELRRGLERVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIY 261

Query:   181 LKHTDAPMNTQSPDY 195
             LKH      TQ PD+
Sbjct:   262 LKHKYEGQ-TQIPDF 275

GO:0005575 "cellular_component" evidence=ND

GO:0006584 "catecholamine metabolic process" evidence=ISS

GO:0040003 "chitin-based cuticle development" evidence=ISS

UNIPROTKB|P80041 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)]

 Score = 526 (190.2 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
 Identities = 100/184 (54%), Positives = 131/184 (71%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K +  L +A P +++  +  +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct:   153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
                 +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E +IWLHVDA
Sbjct:   213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct:   273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332

Query:   181 LKHT 184
             LKH+
Sbjct:   333 LKHS 336

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)]

 Score = 518 (187.4 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
 Identities = 100/184 (54%), Positives = 128/184 (69%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K    L +A P + +  I  +LVAYASDQ++SSVEK+ +IG V ++ + SD
Sbjct:   153 LVALLAARTKVTRHLQAASPELMQAAIMEKLVAYASDQAHSSVEKAGLIGGVRLKAIPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
                 +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E  +WLHVDA
Sbjct:   213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEGLWLHVDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct:   273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPVY 332

Query:   181 LKHT 184
             L+H+
Sbjct:   333 LRHS 336

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)]

 Score = 514 (186.0 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 97/184 (52%), Positives = 129/184 (70%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K I  L +A P  ++  I  +LVAY SDQ++SSVE++ +IG + ++ + SD
Sbjct:   153 LVALLAARTKVIRQLQAASPEFTQAAIMEKLVAYTSDQAHSSVERAGLIGGIKLKAVPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
              N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC +  +WLH+DA
Sbjct:   213 GNFSMRASALREALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICNQEGVWLHIDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ +L  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct:   273 AYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFNMDPVY 332

Query:   181 LKHT 184
             LKH+
Sbjct:   333 LKHS 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IDA

GO:0015842 "synaptic vesicle amine transport" evidence=ISO

GO:0016597 "amino acid binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0042416 "dopamine biosynthetic process" evidence=ISO

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

FB|FBgn0000422 Ddc "Dopa decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 512 (185.3 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 96/195 (49%), Positives = 137/195 (70%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++L AK KK+ ++    P   E+ I  +LV Y SDQ++SSVE++ ++G V +R ++S+
Sbjct:   188 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE 247

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
              N  +RG AL  A+++D+A+GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct:   248 -NHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 306

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PEY HL +G+E  DSF FN HKW+L N DCSAMW+K+ + + N F  D +Y
Sbjct:   307 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 366

Query:   181 LKHTDAPMNTQSPDY 195
             LKH    M   +PDY
Sbjct:   367 LKHD---MQGSAPDY 378

GO:0006585 "dopamine biosynthetic process from tyrosine" evidence=IMP

GO:0006587 "serotonin biosynthetic process from tryptophan" evidence=IMP

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=NAS;IMP;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0006584 "catecholamine metabolic process" evidence=NAS

GO:0008062 "eclosion rhythm" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0048085 "adult chitin-containing cuticle pigmentation" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI

UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 521 (188.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
 Identities = 100/184 (54%), Positives = 131/184 (71%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K I  L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct:   153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
              N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC + +IWLHVDA
Sbjct:   213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D  Y
Sbjct:   273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332

Query:   181 LKHT 184
             LKH+
Sbjct:   333 LKHS 336

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0010259 "multicellular organismal aging" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046684 "response to pyrethroid" evidence=IEA

GO:0052314 "phytoalexin metabolic process" evidence=IEA

GO:0071312 "cellular response to alkaloid" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046219 "indolalkylamine biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E7EU95 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 521 (188.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
 Identities = 100/184 (54%), Positives = 131/184 (71%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K I  L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct:    75 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 134

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
              N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC + +IWLHVDA
Sbjct:   135 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 194

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D  Y
Sbjct:   195 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 254

Query:   181 LKHT 184
             LKH+
Sbjct:   255 LKHS 258

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)]

 Score = 510 (184.6 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 95/184 (51%), Positives = 129/184 (70%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K I  L +A P +++  +  +LVAY SDQ++SSVE++ +IG V ++ + SD
Sbjct:   153 LVALLAARTKMIRQLQAASPELTQAALMEKLVAYTSDQAHSSVERAGLIGGVKIKAIPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
              N  +R  AL  A++ D A GLIP  +V TLGTT  C+FDNL E+GPIC +  +WLH+DA
Sbjct:   213 GNYSMRAAALREALERDKAAGLIPFFVVVTLGTTSCCSFDNLLEVGPICNQEGVWLHIDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGSA + PE+ +L  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct:   273 AYAGSAFICPEFRYLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTEAFNMDPVY 332

Query:   181 LKHT 184
             L+H+
Sbjct:   333 LRHS 336

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0010259 "multicellular organismal aging" evidence=IEP

GO:0015842 "synaptic vesicle amine transport" evidence=IDA

GO:0016597 "amino acid binding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030170 "pyridoxal phosphate binding" evidence=IDA;TAS

GO:0030424 "axon" evidence=IDA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042416 "dopamine biosynthetic process" evidence=IEA;IDA

GO:0042417 "dopamine metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0042427 "serotonin biosynthetic process" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046684 "response to pyrethroid" evidence=IEP

GO:0052314 "phytoalexin metabolic process" evidence=IEP

GO:0071312 "cellular response to alkaloid" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
 Identities = 94/183 (51%), Positives = 129/183 (70%)

Query:     1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
             +V++LAA+ K    L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct:   153 LVALLAARTKVTRRLQAASPGLTQGAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212

Query:    61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
                 +R  AL  A++ D A+GLIP  +VATLGTT  C+FDNL E+GPIC + ++WLH+DA
Sbjct:   213 GKFAMRASALQEALERDKAEGLIPFFVVATLGTTSCCSFDNLLEVGPICNKEDMWLHIDA 272

Query:   121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
             AYAGS+ + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    L   F  D +Y
Sbjct:   273 AYAGSSFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLIGAFKLDPLY 332

Query:   181 LKH 183
             LKH
Sbjct:   333 LKH 335

GO:0009636 "response to toxic substance" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88533	DDC_MOUSE	4, ., 1, ., 1, ., 2, 8	0.4504	0.8719	0.6666	yes	N/A
P80041	DDC_PIG	4, ., 1, ., 1, ., 2, 8	0.4553	0.8501	0.6419	yes	N/A
Q8RY79	TYDC1_ARATH	4, ., 1, ., 1, ., 2, 5	0.3767	0.8528	0.6387	yes	N/A
P22781	DDC_CAVPO	4, ., 1, ., 1, ., 2, 8	0.4475	0.8719	0.6666	yes	N/A
P27718	DDC_BOVIN	4, ., 1, ., 1, ., 2, 8	0.4480	0.9073	0.6837	yes	N/A
P14173	DDC_RAT	4, ., 1, ., 1, ., 2, 8	0.4447	0.8719	0.6666	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	367
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	1e-107
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	3e-84
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	7e-67
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	2e-60
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	5e-50
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	5e-28
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	3e-15
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	8e-13
PRK02769	380	PRK02769, PRK02769, histidine decarboxylase; Provi	4e-10
TIGR01788	431	TIGR01788, Glu-decarb-GAD, glutamate decarboxylase	8e-09
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	2e-08
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	2e-08
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	3e-06
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	1e-05
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	3e-05
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	1e-04
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	5e-04
TIGR03531	444	TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec)	5e-04
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	6e-04
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	0.003

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  320 bits (821), Expect = e-107
 Identities = 133/291 (45%), Positives = 178/291 (61%), Gaps = 34/291 (11%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++LAA+ K I  + +AG          +LVAY SDQ++SS+EK+A+I  V +R++ +D
Sbjct: 117 LLALLAARTKWIRRMKAAGK--PSLG---KLVAYTSDQAHSSIEKAALIAGVELREIPTD 171

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           +NG +RG  L  A++ED   GLIP  + ATLGTTG+ AFD L+ELG IC +Y++WLHVDA
Sbjct: 172 ENGKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDA 231

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ H   G+E  DSF+FN HKW+L   DCSA+WV++   L      +  Y
Sbjct: 232 AYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEY 291

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           L H D   +  + DY                              WQ PLSRRFR LKLW
Sbjct: 292 LGHNDKQSDV-AVDY----------------------------GDWQIPLSRRFRILKLW 322

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLK 291
             LRSYG++GLQ  +R+H+ LAK F  LV KD RFE+     +GLVCFRLK
Sbjct: 323 FVLRSYGVEGLQNQIRRHVELAKYFEALVRKDSRFEICAERGLGLVCFRLK 373

Length = 373

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  263 bits (674), Expect = 3e-84
 Identities = 145/363 (39%), Positives = 199/363 (54%), Gaps = 49/363 (13%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV---PVRQL 57
           +V +LAA+ +    L   G    E     +LV YASDQ++S+++K+  I  +     R L
Sbjct: 160 LVVLLAARDRV---LRKVGKNALE-----KLVVYASDQTHSALQKACQIAGIHPENCRLL 211

Query: 58  RSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIW 115
           ++D   N  L  + L  A+  DL+ GLIP  L AT+GTT + A D L ELG I +   +W
Sbjct: 212 KTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMW 271

Query: 116 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF 175
            HVDAAYAGSA + PEY H   G+E  DSF  NAHKW LTN DCS +WVK+ N L  +  
Sbjct: 272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLS 331

Query: 176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR 235
           T+  +LK      N  S   +V+++                       + WQ PL RRFR
Sbjct: 332 TNPEFLK------NKASQANSVVDY-----------------------KDWQIPLGRRFR 362

Query: 236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRL---KG 292
           +LKLWM LR YG++ LQ+Y+R HI LAK+F  LV +D RFE+V P    LVCFRL   K 
Sbjct: 363 SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKN 422

Query: 293 DNDLTNQLYERLM----SHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS 348
           + D  N+L   L+    S  +I+I      G+  LRF V +P T +  V  AW  +  ++
Sbjct: 423 NEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEA 482

Query: 349 SEM 351
           S++
Sbjct: 483 SKL 485

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  219 bits (560), Expect = 7e-67
 Identities = 141/363 (38%), Positives = 193/363 (53%), Gaps = 49/363 (13%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV---PVRQL 57
           +V +LAA R +IL     G T     +  +LV Y SDQ++SS  K+ +IG +    +R L
Sbjct: 208 LVVVLAA-RDRIL--KKVGKT-----LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLL 259

Query: 58  RSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIW 115
           ++D   N  +  ++L  A+  DLAKG IP  + AT+GTT + A D L  LG I ++Y IW
Sbjct: 260 KTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIW 319

Query: 116 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF 175
           LHVDAAYAG+A + PEY     G+E  DSF  NAHKWL  N  CS +WVK+   L +   
Sbjct: 320 LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALK 379

Query: 176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR 235
           T+  YL+         S   TV+N+                       + WQ  LSRRFR
Sbjct: 380 TNPEYLEFK------VSKKDTVVNY-----------------------KDWQISLSRRFR 410

Query: 236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRL---KG 292
           +LKLWM LR YG + L+ ++R H++LAK F D V +D  FE+V      LVCFRL    G
Sbjct: 411 SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDG 470

Query: 293 DNDLTNQLYERLM----SHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS 348
           D D  N+    L+    S  +I+I   +  G+  LRF V +P T +  V  AW  I   +
Sbjct: 471 DEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHA 530

Query: 349 SEM 351
           S+ 
Sbjct: 531 SKF 533

Length = 539

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  197 bits (503), Expect = 2e-60
 Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 5/165 (3%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++LAA+ +    L + G          +LV   SDQ++ SVEK+A   DV VR +  D
Sbjct: 71  LLALLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVD 125

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++G +  +AL  A+ ED A+GL P  +VAT GTT T A D LEE+  + ++Y++WLHVDA
Sbjct: 126 EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA 185

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVK 165
           AY G  L  PE  HL  G+E VDS + + HK+ L    CSA+ V+
Sbjct: 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score =  173 bits (441), Expect = 5e-50
 Identities = 84/314 (26%), Positives = 128/314 (40%), Gaps = 57/314 (18%)

Query: 34  YASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLG 92
             S+ ++ S EK+A    + +R++ +   +  +  DAL  A+ E+   G     +V T G
Sbjct: 161 VCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAG 216

Query: 93  TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLEYVDSFAFNAHK 151
           TT T + D++EEL  I +EY IWLHVDAA+ G  L   E       GLE VDS   + HK
Sbjct: 217 TTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHK 276

Query: 152 WLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEF 211
           + L    C  +  ++   L                                         
Sbjct: 277 YGLAPIGCGVVLFRDEEAL------------------------------------RRILI 300

Query: 212 LNCSKGPGGGVIQ--HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV 269
                 PGGG+       +   R  +AL L+  LR  G +G +  L + + LA+  A+ +
Sbjct: 301 FADYYLPGGGIPNFTILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELARYLAEEL 358

Query: 270 EKDDRFELVCPPSMGLVCFRLKGDND-----------LTNQLYERLMSHKQIYIIKASFQ 318
           EK   FELV  P + +V FRLK D D              Q+  +L+      +      
Sbjct: 359 EKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVT 418

Query: 319 GRPFLRFVVTSPET 332
           GR  L+F+V +   
Sbjct: 419 GRQGLKFIVANLLI 432

Length = 460

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  111 bits (281), Expect = 5e-28
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD 293
            RALKLW TLR +G  G   ++ + + LAK  A+L+  D  FEL+  P++ LVCFRLK  
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPS 288

Query: 294 --NDLTNQ-LYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
              D  N  L +RL      ++   +  G   LRFVVT+P T + D      +I
Sbjct: 289 VKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDI 342

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 36  SDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLG 92
           S++ + S+ K+A    IG   +  +++D N  +  DAL     E   + + P  +V   G
Sbjct: 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAG 274

Query: 93  TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKW 152
           TT T   D L+E+  I QE     HVDAA+ G+ LL   Y HL +G+E  DS   +AHK 
Sbjct: 275 TTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQ 334

Query: 153 L 153
           L
Sbjct: 335 L 335

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 65.5 bits (160), Expect = 8e-13
 Identities = 35/146 (23%), Positives = 47/146 (32%), Gaps = 8/146 (5%)

Query: 21  TVSENDIKSRLVAYASDQSNSSVEKSAI-IGDVPVRQLRSDDNGVLRGDALLTAVKEDLA 79
                 +            + S    A  +       +  DD G      L  A+ E+L 
Sbjct: 32  AALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAG---YGGLDVAILEELK 88

Query: 80  KGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL 139
                  +V T  TT       L+E+  I +EY I L VDAA AG A   P         
Sbjct: 89  AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGV---LIPE 145

Query: 140 EYVDSFAFNAHKWLLTNHDCSAMWVK 165
              D   F+ HK L        + VK
Sbjct: 146 GGADVVTFSLHKNLGGE-GGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 32  VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATL 91
             Y S  ++ SV K A +  +  R + S  NG +  D L++ +KE+  +  I   + A +
Sbjct: 112 TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPI---IFANI 168

Query: 92  GTTGTCAFDNLEELGPICQEYNI---WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFN 148
           GTT T A DN++E+  I ++  I   ++H DAA +G  L            + +DS A +
Sbjct: 169 GTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAIS 228

Query: 149 AHKWLLTNHDC 159
            HK++ +   C
Sbjct: 229 GHKFIGSPMPC 239

Length = 380

>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 67/280 (23%), Positives = 113/280 (40%), Gaps = 66/280 (23%)

Query: 44  EKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL 102
           EK A   DV +R++  D    V+  + ++ AV E+         +V  LGTT T  ++++
Sbjct: 152 EKFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDV 205

Query: 103 EELGPICQEYN------IWLHVDAAYAG--SALLLPEYAHLKRGLEYVDSFAFNAHKWLL 154
           + L     EYN      I +HVDAA  G  +  + P+     R L  V S   + HK+ L
Sbjct: 206 KALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGL 264

Query: 155 TNHDCSAMWV--KNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTV--MNWLGKALGLPEE 210
                   WV  ++   L                      P+  +  +N+LG   G    
Sbjct: 265 VYPGVG--WVIWRDEEAL----------------------PEELIFHVNYLG---GDEPT 297

Query: 211 F-LNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV 269
           F LN S+     + Q++                    G +G +  ++  + +A+  A+ +
Sbjct: 298 FTLNFSRPANQVIAQYYN---------------FLRLGREGYRKIMQNSLDVARYLAEEI 342

Query: 270 EKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHK 308
            K   FE++     + LV F+LK D D    LY+  +SH+
Sbjct: 343 AKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYD--LSHR 380

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 62/265 (23%), Positives = 102/265 (38%), Gaps = 51/265 (19%)

Query: 42  SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN 101
           S +K+A +  V +R+   DD+   R D  + AV++ +    I   +V   GTT     D 
Sbjct: 116 SFDKAADMLGVELRRAPLDDD--YRVD--VKAVEDLIDDNTI--GIVGIAGTTELGQVDP 169

Query: 102 LEELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS 160
           + EL  I  E  I+LHVDAA+ G  +  L +  +    L  VDS   + HK  L      
Sbjct: 170 IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAG 229

Query: 161 AMWVKNANHLTNTFFTDRVYLKH--TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP 218
            +            F D  YL     D P  T     T+    G                
Sbjct: 230 GI-----------LFRDESYLDALAVDTPYLTSKKQATL---TGTR-------------S 262

Query: 219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELV 278
           G GV   +         A+     ++  G +G +  + + +   +  A+ +++   FE V
Sbjct: 263 GAGVAATY---------AV-----MKYLGREGYRKVVERCMENTRWLAEELKERG-FEPV 307

Query: 279 CPPSMGLVCFRLKGDNDLTNQLYER 303
             P + +V F     +++  +L ER
Sbjct: 308 IEPVLNIVAFDDPNPDEVREKLRER 332

Length = 371

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 14/116 (12%)

Query: 42  SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN 101
           S EK+A +  + +R    D++     D  +  V++ +    I   +V   GTT     D+
Sbjct: 118 SFEKAAEMLGLELRYAPLDED--YTVD--VKDVEDLIDDNTI--GIVGIAGTTELGQIDD 171

Query: 102 LEELGPICQEYNIWLHVDAAYAGSALLLP------EYAHLKRGLEYVDSFAFNAHK 151
           +EEL  I  E  I+LHVDAA+ G   ++P              L  V S   + HK
Sbjct: 172 IEELSKIALENGIYLHVDAAFGG--FVIPFLKKGYNPPPFDFSLPGVQSITIDPHK 225

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 54  VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
           VR +  DD+G+L  DAL   +     K L+   L      TGT     ++E+  +  E+ 
Sbjct: 139 VRVIPLDDDGLLDLDALEKLITPK-TK-LV--ALSHVSNVTGTVN--PVKEIAELAHEHG 192

Query: 114 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN 166
             + VDAA A   L +     ++      D  AF+ HKWLL       ++V+ 
Sbjct: 193 ALVLVDAAQAAGHLPID----VQE--LGCDFLAFSGHKWLLGPTGIGVLYVRK 239

Length = 405

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 39/157 (24%)

Query: 16  TSAGPTVSEND---IKSRLVAYASDQSN-----SSVEKSAIIGDVPVRQLRS-------- 59
           TS     +E++   IK   +AY + Q       S++E  A++     R L          
Sbjct: 67  TSGA---TESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLN--TCRYLERQGFEVTYL 121

Query: 60  --DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
             D NG++  + L  A++ D    L+   ++     TGT     + E+G IC+E  I  H
Sbjct: 122 PVDSNGLVDLEQLEEALRPDTI--LV--SIMHANNETGTIQ--PIAEIGEICKERGILFH 175

Query: 118 VDAAYAGSALLLPEYAHLKRGLE--YVDSFAFNAHKW 152
           VDA  A           +   LE   VD  +F+AHK+
Sbjct: 176 VDAVQA--------VGKIPIDLEELGVDLLSFSAHKF 204

Length = 386

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 47  AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-----GLIPCCLVATLGTT-GTC-AF 99
           A +G      L   + G L  + L  A++          GLI   L  T  +  G   + 
Sbjct: 91  AELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLI--SLENTHNSAGGQVVSL 148

Query: 100 DNLEELGPICQEYNIWLHVDAA---YAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN 156
           + L E+  I +E+ I LH+D A    A  AL +     +K    Y DS + +  K L   
Sbjct: 149 EELREIRAIAREHGIPLHLDGARLANAAVALGVI----VKEITSYADSVSMSLSKGLGAP 204

Length = 288

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 55/322 (17%), Positives = 92/322 (28%), Gaps = 75/322 (23%)

Query: 32  VAYASDQSNSSVEKSAIIGDVPVRQ--LRSDDNGVLRGDALLTAVKEDLA--KGLIPCCL 87
                  +  S  +   +    V +  L S ++  L  DAL  A+KE     K ++    
Sbjct: 92  AILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSP 151

Query: 88  VATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAF 147
               GT  T     LE+L  + +E+NI L VD AYAG                    F F
Sbjct: 152 HNPTGTVATLEE--LEKLLDLAKEHNILLLVDEAYAG--------------------FVF 189

Query: 148 NAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGL 207
            +                            R  L      +   S          KA GL
Sbjct: 190 GSLD----------------------AVATRALLAEGPNLLVVGS--------FSKAFGL 219

Query: 208 PEE---FLNCSKGPGGGVIQHWQTPLSRRF-------RALKLWMTLRSYGLKGLQAYLRK 257
                 ++  +       +      L+R F        A    ++        L+   ++
Sbjct: 220 AGWRVGYILGNA-----AVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQR 274

Query: 258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS- 316
                    D +E      ++   + G        D +    L + L+    +Y+   S 
Sbjct: 275 IKERRDYLRDGLEAAG-LSVLPSQA-GFFLLTG-LDPEAALALAQVLLEEVGVYVTPGSS 331

Query: 317 FQGRPFLRFVVTSPETNQCDVA 338
           F G  +LR  V      + +  
Sbjct: 332 FGGPGWLRITVAGGTEEELEEL 353

Length = 357

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 2/28 (7%)

Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           VM+WL K LGLP+EFL    G GGGV+Q
Sbjct: 84  VMDWLAKMLGLPKEFL--GSGEGGGVLQ 109

Length = 373

>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium transferase

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 21/105 (20%)

Query: 64  VLRGDALLTAVK------EDLAKGLIPCCLVATLGTTGTC----AFDNLEELGPICQEYN 113
           VL GD L T V+      E++    I C L     +T +C    + D++EE+  IC  Y+
Sbjct: 181 VLDGDELTTDVEDIERAIEEIGPDNILCVL-----STTSCFAPRSPDDIEEIAKICANYD 235

Query: 114 IWLHVDAAYAGSALLLPEYAH-LKRGLEY--VDSFAFNAHKWLLT 155
           I   V+ AY    L   +Y   + + ++   VD+   +  K  + 
Sbjct: 236 IPHIVNNAY---GLQSNKYMELINKAIKVGRVDAVVSSTDKNFMV 277

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein [Protein synthesis, tRNA aminoacylation]. Length = 444

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 18/28 (64%), Positives = 21/28 (75%), Gaps = 2/28 (7%)

Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           V++WL K L LPE+FL  S G GGGVIQ
Sbjct: 127 VLDWLAKLLNLPEQFL--STGNGGGVIQ 152

Length = 490

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 57  LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWL 116
           ++ D+ G++  + +  A+K +         +V +  +  T     +EE+G + QE  I+ 
Sbjct: 117 VKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGELAQENGIFF 170

Query: 117 HVDAA-YAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL 154
            +DAA  AG   ++P    +      +D  AF  HK LL
Sbjct: 171 ILDAAQTAG---VIP----IDMTELAIDMLAFTGHKGLL 202

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
KOG0628|consensus	511		100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
KOG0629|consensus	510		100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	100.0
PLN02263	470	serine decarboxylase	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.96
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.96
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.96
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.95
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.95
KOG1383|consensus	491		99.95
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.95
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.95
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.95
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.95
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.95
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.95
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.95
PRK05367	954	glycine dehydrogenase; Provisional	99.95
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.94
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.94
PLN02651	364	cysteine desulfurase	99.94
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.94
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.93
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.93
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.92
PRK02948	381	cysteine desulfurase; Provisional	99.91
PRK14012	404	cysteine desulfurase; Provisional	99.91
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.91
PRK12566	954	glycine dehydrogenase; Provisional	99.91
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.91
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.91
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.9
PRK03080	378	phosphoserine aminotransferase; Provisional	99.9
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.9
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.89
KOG1549|consensus	428		99.88
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.87
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.87
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.87
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.87
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.86
PLN02724	805	Molybdenum cofactor sulfurase	99.86
PLN02721	353	threonine aldolase	99.86
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.86
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.85
KOG2862|consensus	385		99.85
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.85
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.85
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.85
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.84
PRK07179	407	hypothetical protein; Provisional	99.84
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.83
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.83
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.83
KOG1360|consensus	570		99.83
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.82
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.82
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.82
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.81
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.81
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.8
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.8
PLN02483	489	serine palmitoyltransferase	99.8
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.79
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.79
PRK13392	410	5-aminolevulinate synthase; Provisional	99.79
PLN02955	476	8-amino-7-oxononanoate synthase	99.79
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.79
PRK09064	407	5-aminolevulinate synthase; Validated	99.78
PLN02822	481	serine palmitoyltransferase	99.78
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.78
PRK06108	382	aspartate aminotransferase; Provisional	99.78
PRK05764	393	aspartate aminotransferase; Provisional	99.77
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.77
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.77
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.77
PRK08361	391	aspartate aminotransferase; Provisional	99.77
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.77
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.77
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.76
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.76
PRK13393	406	5-aminolevulinate synthase; Provisional	99.75
PRK05367	954	glycine dehydrogenase; Provisional	99.75
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.74
PRK07324	373	transaminase; Validated	99.74
KOG1359|consensus	417		99.74
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.73
PRK05957	389	aspartate aminotransferase; Provisional	99.73
PRK15029	755	arginine decarboxylase; Provisional	99.73
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.73
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.73
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.73
PRK06207	405	aspartate aminotransferase; Provisional	99.73
PRK05968	389	hypothetical protein; Provisional	99.72
PRK06225	380	aspartate aminotransferase; Provisional	99.72
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.72
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.72
PLN02509	464	cystathionine beta-lyase	99.72
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.72
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.71
PRK06290	410	aspartate aminotransferase; Provisional	99.71
PRK08861	388	cystathionine gamma-synthase; Provisional	99.71
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.71
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.71
PRK06767	386	methionine gamma-lyase; Provisional	99.71
PRK08114	395	cystathionine beta-lyase; Provisional	99.71
PLN02271	586	serine hydroxymethyltransferase	99.71
PRK08776	405	cystathionine gamma-synthase; Provisional	99.7
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.7
PRK08064	390	cystathionine beta-lyase; Provisional	99.7
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.7
PLN00175	413	aminotransferase family protein; Provisional	99.7
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.7
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.7
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.7
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.7
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.7
PRK07682	378	hypothetical protein; Validated	99.7
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.7
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.7
PTZ00377	481	alanine aminotransferase; Provisional	99.69
PRK08912	387	hypothetical protein; Provisional	99.69
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
PRK07811	388	cystathionine gamma-synthase; Provisional	99.69
PRK07681	399	aspartate aminotransferase; Provisional	99.69
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.69
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.68
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.68
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.68
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.68
PLN02187	462	rooty/superroot1	99.68
PRK09082	386	methionine aminotransferase; Validated	99.68
PTZ00433	412	tyrosine aminotransferase; Provisional	99.68
PRK08363	398	alanine aminotransferase; Validated	99.68
PRK08249	398	cystathionine gamma-synthase; Provisional	99.68
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.67
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.67
PRK09265	404	aminotransferase AlaT; Validated	99.67
KOG1368|consensus	384		99.67
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.67
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.67
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.67
PRK08045	386	cystathionine gamma-synthase; Provisional	99.67
PRK07550	386	hypothetical protein; Provisional	99.67
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.66
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.66
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.66
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.66
PRK07568	397	aspartate aminotransferase; Provisional	99.66
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.66
PRK09028	394	cystathionine beta-lyase; Provisional	99.66
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.66
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.66
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.66
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.66
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.66
PRK07671	377	cystathionine beta-lyase; Provisional	99.66
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.66
KOG0259|consensus	447		99.66
PLN02656	409	tyrosine transaminase	99.65
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.65
PRK05942	394	aspartate aminotransferase; Provisional	99.65
PLN02452	365	phosphoserine transaminase	99.65
PRK08574	385	cystathionine gamma-synthase; Provisional	99.65
PRK06836	394	aspartate aminotransferase; Provisional	99.65
PRK07777	387	aminotransferase; Validated	99.65
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.65
PRK06348	384	aspartate aminotransferase; Provisional	99.65
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.64
PRK08068	389	transaminase; Reviewed	99.64
PRK07503	403	methionine gamma-lyase; Provisional	99.64
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.64
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.64
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.64
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.64
PRK12414	384	putative aminotransferase; Provisional	99.64
PLN02242	418	methionine gamma-lyase	99.64
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.64
PRK06234	400	methionine gamma-lyase; Provisional	99.64
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.63
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.63
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.63
PRK07050	394	cystathionine beta-lyase; Provisional	99.63
PRK06107	402	aspartate aminotransferase; Provisional	99.63
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.63
PRK08960	387	hypothetical protein; Provisional	99.63
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.63
PRK15400	714	lysine decarboxylase CadA; Provisional	99.63
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.63
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.63
PRK07582	366	cystathionine gamma-lyase; Validated	99.62
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.62
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.62
PRK07908	349	hypothetical protein; Provisional	99.62
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.62
PRK09105	370	putative aminotransferase; Provisional	99.62
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.62
PRK07337	388	aminotransferase; Validated	99.62
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.61
PRK10534	333	L-threonine aldolase; Provisional	99.61
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.61
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.61
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.61
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.61
PRK13578	720	ornithine decarboxylase; Provisional	99.61
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.61
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.61
PRK08636	403	aspartate aminotransferase; Provisional	99.6
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.6
PRK07683	387	aminotransferase A; Validated	99.59
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.59
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.59
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.59
PRK06460	376	hypothetical protein; Provisional	99.58
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.58
PRK07505	402	hypothetical protein; Provisional	99.58
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.58
KOG1357|consensus	519		99.57
PRK05939	397	hypothetical protein; Provisional	99.57
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.57
PLN02231	534	alanine transaminase	99.57
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.57
PRK08175	395	aminotransferase; Validated	99.57
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.57
KOG2040|consensus	1001		99.56
PRK05967	395	cystathionine beta-lyase; Provisional	99.55
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.55
PRK06855	433	aminotransferase; Validated	99.55
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.55
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.54
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.54
PRK03321	352	putative aminotransferase; Provisional	99.54
KOG3846|consensus	465		99.54
PRK09148	405	aminotransferase; Validated	99.54
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.54
PTZ00376	404	aspartate aminotransferase; Provisional	99.53
PRK04311	464	selenocysteine synthase; Provisional	99.52
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.52
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.51
PRK12462	364	phosphoserine aminotransferase; Provisional	99.51
PLN02672	1082	methionine S-methyltransferase	99.51
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.51
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.51
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.5
PLN02624	474	ornithine-delta-aminotransferase	99.5
PLN02397	423	aspartate transaminase	99.49
PRK06434	384	cystathionine gamma-lyase; Validated	99.49
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.49
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.48
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.48
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.48
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.48
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.47
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.46
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.46
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.45
PRK08637	388	hypothetical protein; Provisional	99.45
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.45
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.45
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.43
PRK13237	460	tyrosine phenol-lyase; Provisional	99.43
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.43
PRK08354	311	putative aminotransferase; Provisional	99.43
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.43
KOG0256|consensus	471		99.42
PRK05839	374	hypothetical protein; Provisional	99.42
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.42
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.42
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.41
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.41
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.41
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.41
PRK09275	527	aspartate aminotransferase; Provisional	99.4
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.4
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.4
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.39
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.39
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.38
PRK02627	396	acetylornithine aminotransferase; Provisional	99.38
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.38
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.36
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.36
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.35
PLN02368	407	alanine transaminase	99.35
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.34
PRK04260	375	acetylornithine aminotransferase; Provisional	99.31
KOG0053|consensus	409		99.31
PRK07049	427	methionine gamma-lyase; Validated	99.31
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.3
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.29
KOG0257|consensus	420		99.28
PRK12566	954	glycine dehydrogenase; Provisional	99.28
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.27
PRK06541	460	hypothetical protein; Provisional	99.27
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.27
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.26
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.25
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.23
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.2
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.2
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.16
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.14
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.14
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.14
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.13
PRK07678	451	aminotransferase; Validated	99.12
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.12
PLN00144	382	acetylornithine transaminase	99.11
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.11
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.1
PRK06062	451	hypothetical protein; Provisional	99.09
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.09
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.08
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.06
PRK06105	460	aminotransferase; Provisional	99.06
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.06
KOG1358|consensus	467		99.05
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.05
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.05
KOG0630|consensus	838		99.03
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.03
PRK12403	460	putative aminotransferase; Provisional	99.03
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.03
KOG0634|consensus	472		99.01
PRK07481	449	hypothetical protein; Provisional	99.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.99
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.99
KOG3843|consensus	432		98.98
PRK07483	443	hypothetical protein; Provisional	98.98
PRK07036	466	hypothetical protein; Provisional	98.98
PRK06149	972	hypothetical protein; Provisional	98.95
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.95
PRK05965	459	hypothetical protein; Provisional	98.94
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.94
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.93
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.93
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.92
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.91
KOG2467|consensus	477		98.91
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.91
PRK06148	1013	hypothetical protein; Provisional	98.9
PRK08297	443	L-lysine aminotransferase; Provisional	98.9
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.89
PRK07482	461	hypothetical protein; Provisional	98.89
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.89
PRK06917	447	hypothetical protein; Provisional	98.88
PRK07480	456	putative aminotransferase; Validated	98.88
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.87
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.85
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.83
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.82
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	98.8
KOG0633|consensus	375		98.79
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.79
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.76
KOG1402|consensus	427		98.76
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.6
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.57
PRK07046	453	aminotransferase; Validated	98.51
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.46
KOG1404|consensus	442		98.42
KOG0258|consensus	475		98.37
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.31
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.28
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.09
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.04
KOG1401|consensus	433		97.96
KOG1412|consensus	410		97.84
KOG2040|consensus	1001		97.82
KOG1405|consensus	484		97.66
KOG2790|consensus	370		97.62
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	97.55
COG4100	416	Cystathionine beta-lyase family protein involved i	95.71
KOG1411|consensus	427		95.48
KOG1403|consensus	452		95.23
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	93.61

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=2.6e-51  Score=402.96  Aligned_cols=318  Identities=41%  Similarity=0.724  Sum_probs=284.1

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc---ceEEEecC--CCCCcCHHHHHHHHH
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSD--DNGVLRGDALLTAVK   75 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~--~~~~~d~~~L~~~l~   75 (367)
                      |+||++||++++++.+..        ..++++||+|+.+|+|+.+++++.|+   .++.|+++  ++++||+++|+++|+
T Consensus       208 l~al~aAR~~~~~~~g~~--------~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~  279 (539)
T PLN02590        208 LVVVLAARDRILKKVGKT--------LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAIS  279 (539)
T ss_pred             HHHHHHHHHHHHhhhccc--------CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHH
Confidence            579999999988653211        14689999999999999999999988   58999997  468999999999999


Q ss_pred             HHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc
Q psy3048          76 EDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        76 ~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                      ++.++|..|.+|+.+.|+|.+|.+|||++|+++|++||+|+|||||+|+..+++++++..+.|++++|++++++|||++.
T Consensus       280 ~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~  359 (539)
T PLN02590        280 HDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFA  359 (539)
T ss_pred             HHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCc
Confidence            99999999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR  235 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (367)
                      |++||+++++++..+...+...+.|+...... .+...++                            .+|+++++++++
T Consensus       360 p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~-~~~~~d~----------------------------~d~~i~lsRr~r  410 (539)
T PLN02590        360 NQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK-KDTVVNY----------------------------KDWQISLSRRFR  410 (539)
T ss_pred             CcCEEEEEecCHHHHHHHhhcCHHHhCCcccc-cccCCCc----------------------------cccCCCCCCchH
Confidence            99999999999877777778888998553220 0112344                            778999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------chHHHHHHHHHhccC
Q psy3048         236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------NDLTNQLYERLMSHK  308 (367)
Q Consensus       236 ~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g  308 (367)
                      ++++|.+|+.+|.+|+++++++..++++|+.+.|++.++|+++.+|.+++|+|++.+.       +..+.++.++|.+.|
T Consensus       411 aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G  490 (539)
T PLN02590        411 SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTG  490 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999998652       345678999999999


Q ss_pred             cEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         309 QIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       309 ~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      .+++.++.+.|+.+||++++++.++++||+.+++.|.+...++.++.
T Consensus       491 ~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~~  537 (539)
T PLN02590        491 KIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRND  537 (539)
T ss_pred             CEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999999999999999999999999999988876654

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=2.6e-49  Score=388.62  Aligned_cols=316  Identities=44%  Similarity=0.759  Sum_probs=279.4

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcc---eEEEecCC--CCCcCHHHHHHHHH
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVP---VRQLRSDD--NGVLRGDALLTAVK   75 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~---v~~v~~~~--~~~~d~~~L~~~l~   75 (367)
                      |+||++||++++++.+..+        .++++||+|+.+|+|+.+++.+.|+.   ++.||++.  +++||+++|+++|+
T Consensus       160 l~al~~AR~~~~~~~g~~~--------~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~  231 (490)
T PLN02880        160 LVVLLAARDRVLRKVGKNA--------LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAIS  231 (490)
T ss_pred             HHHHHHHHHHHHHHhcccc--------cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHH
Confidence            5799999999886643221        35799999999999999999999984   88999974  68999999999999


Q ss_pred             HHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc
Q psy3048          76 EDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        76 ~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                      ++.++|..|.+|+.+.|+|.+|.+||+++|+++|++||+|+|||||||++.++.+.++..+.+++.+|++++++|||+++
T Consensus       232 ~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~  311 (490)
T PLN02880        232 TDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLT  311 (490)
T ss_pred             HHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCC
Confidence            99989999999999999999999999999999999999999999999999888888888899999999999999999999


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR  235 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (367)
                      |.+||++++++...+...+...+.|+...... .....++                            .+|+++++++++
T Consensus       312 P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~-~~~~~~~----------------------------~~~~i~~~rr~~  362 (490)
T PLN02880        312 NFDCSLLWVKDRNALIQSLSTNPEFLKNKASQ-ANSVVDY----------------------------KDWQIPLGRRFR  362 (490)
T ss_pred             CccEEEEEEeCHHHHHHHHccCHHHhcCcccc-ccCCCCh----------------------------hccCcCCCCccc
Confidence            99999999998776666677788888664320 0112233                            567888999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------chHHHHHHHHHhccC
Q psy3048         236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------NDLTNQLYERLMSHK  308 (367)
Q Consensus       236 ~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g  308 (367)
                      ++++|..++.+|.+|+++++++..++++++.+.|++.++++++.+|.+++++|++++.       +..+.++.++|.++|
T Consensus       363 alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g  442 (490)
T PLN02880        363 SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSG  442 (490)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999998752       334567888899999


Q ss_pred             cEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         309 QIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       309 ~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      .+++.++.+.++.++|+++.++.++++|++.+++.|+++.+++..
T Consensus       443 ~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        443 KIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             CEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888754

>KOG0628|consensus

Probab=100.00  E-value=7.5e-47  Score=348.21  Aligned_cols=321  Identities=53%  Similarity=0.940  Sum_probs=306.6

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      |.++++||..++.+.++..|...++...+++|+|||+.+|.|+.+++.+.|++++.++.+.++.|+.+.|.++|+++.++
T Consensus       153 lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~ar  232 (511)
T KOG0628|consen  153 LVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIAR  232 (511)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhC
Confidence            46899999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      |.+|.+++.|.|+|.++.+|+|++|+.+|+++|+|+|||+||+|..+.+++++...+|++.+|++.+++|||+..-..|+
T Consensus       233 GlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs  312 (511)
T KOG0628|consen  233 GLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCS  312 (511)
T ss_pred             CCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      .+|++++..+.+.++.+|-|+.+...   +..++|                            ++|++..+++|+++++|
T Consensus       313 ~lWvkd~~~~~~~~~vdp~yL~h~~~---~~~~Dy----------------------------rhwqipl~rRfRSLKlW  361 (511)
T KOG0628|consen  313 PLWVKDGTKLSRAFNVDPLYLKHAYQ---GSAPDY----------------------------RHWQIPLGRRFRSLKLW  361 (511)
T ss_pred             cceeecCceeeeeeecChHhhcchhh---ccCCCc----------------------------cccccccccchhhHHHH
Confidence            99999988888888999999988876   457777                            89999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                      ..++.+|.+++++.++++.++++++.+.+.+.+.|++..+...++|+||+.+.+..++++.+++...|.+.+.+...+|+
T Consensus       362 fv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~in~~g~i~l~~~~l~gk  441 (511)
T KOG0628|consen  362 FVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRLNSSGRIHLVPASLHGK  441 (511)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHHHhcCcEEEEEeeecce
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      -++|++++.+.++++||+...+.|.+...++.
T Consensus       442 ~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~  473 (511)
T KOG0628|consen  442 FVLRFAVCSPLTNESDIDEAWKIIFEAADELF  473 (511)
T ss_pred             EEEEEEecCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877643

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=1e-44  Score=356.85  Aligned_cols=309  Identities=25%  Similarity=0.352  Sum_probs=260.7

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccc--------cCceEEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHH
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDI--------KSRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDA   69 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~   69 (367)
                      |+|||+||+++++..+.. ..+.+.++        .++.+|++|+.+|+|+.++++..|.   +++.||++++++||+++
T Consensus       173 l~Al~~AR~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~  251 (522)
T TIGR03799       173 ITALWVARNRLLKADGDF-KGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDA  251 (522)
T ss_pred             HHHHHHHHHHhccccccc-cccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHH
Confidence            589999999988653211 12222222        3578999999999999999999988   79999999999999999


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecc
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNA  149 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~  149 (367)
                      |++++++..+++..|++|+.+.++|.+|.++|+++|+++|++||+|+|||+|||++.++.++++..+.+++.+|++++++
T Consensus       252 L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~  331 (522)
T TIGR03799       252 LRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDA  331 (522)
T ss_pred             HHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEECh
Confidence            99999988777888889999999999999999999999999999999999999998888888888888888999999999


Q ss_pred             ccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccc
Q psy3048         150 HKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTP  229 (367)
Q Consensus       150 hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (367)
                      |||+++|.|||+++++++..+ +.+...+.|+.....      .++                            .+++++
T Consensus       332 HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~~------~d~----------------------------~~~~le  376 (522)
T TIGR03799       332 HKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRKGS------KDL----------------------------GSHTLE  376 (522)
T ss_pred             hhcCCcCcccEEEEEeCHHHH-HHhccCcchhcCCCC------Ccc----------------------------ccceee
Confidence            999999999999999987654 344555677643211      112                            345677


Q ss_pred             ccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC----------------
Q psy3048         230 LSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD----------------  293 (367)
Q Consensus       230 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~----------------  293 (367)
                      +++++.++++|++++.+|.+|+++++++..++++|+.+.|++.|+|+++.+|.+++|+|++.+.                
T Consensus       377 gsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~  456 (522)
T TIGR03799       377 GSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREK  456 (522)
T ss_pred             cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhh
Confidence            8888889999999999999999999999999999999999999999999999999999997542                


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEEC-------CeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASFQ-------GRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~~-------~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                           +..+.++.+++.+.|..+++++...       +..++|++++++.++++||+.+++.-.
T Consensus       457 ~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~  520 (522)
T TIGR03799       457 INELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQR  520 (522)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhh
Confidence                 2244678888999999999877654       346899999999999999999887543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1e-42  Score=331.36  Aligned_cols=257  Identities=44%  Similarity=0.719  Sum_probs=222.4

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      |+||++||+++.++.+..+..  +   .++++||+|+.+|||+.+++.+.|+.++.|+++++++||+++|++++++..++
T Consensus       117 l~al~aAR~~~~~~~~~~~~~--~---~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~  191 (373)
T PF00282_consen  117 LYALLAARERALPRSKAKGVE--E---IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN  191 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT--H---CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhhhcccc--c---ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccc
Confidence            579999999999887666532  1   46899999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      |..|.+|+.+.|+|.+|.+||+++|+++|++|++|+|||+|+|+..++.+.++....+++++|++++++|||+++|++||
T Consensus       192 g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~  271 (373)
T PF00282_consen  192 GKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCG  271 (373)
T ss_dssp             TEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-E
T ss_pred             cccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccce
Confidence            99999999999999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      ++++|++..+...+...+.|+.....+. +...++                            .+++++++|++.++++|
T Consensus       272 ~~l~r~~~~l~~~~~~~~~Yl~~~~~~~-~~~~~~----------------------------~~~tl~~SR~~~alk~w  322 (373)
T PF00282_consen  272 VLLVRDKSDLRDAFSINADYLGNDDRES-DESYDY----------------------------GDYTLQGSRRFRALKLW  322 (373)
T ss_dssp             EEEESSGGGHHGGGEEEETCTT-S-SSS--GGGCE----------------------------EEGSSSSSGHHHHHHHH
T ss_pred             eEEeecccchHHHhccChhhhccccccc-cccccc----------------------------ccccccccccchHHHHH
Confidence            9999998888777777788987553210 111122                            56889999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEc
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLK  291 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~  291 (367)
                      ..++.+|.+|+++++++..++++++.++|++.++++++.+|.+++|+|+++
T Consensus       323 ~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k  373 (373)
T PF00282_consen  323 ATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK  373 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence            999999999999999999999999999999999999999999999999974

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG0629|consensus

Probab=100.00  E-value=1.8e-41  Score=309.39  Aligned_cols=316  Identities=27%  Similarity=0.445  Sum_probs=269.5

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCC---cceEEEecCCCCCcCHHHHHHHHHHH
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKED   77 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g---~~v~~v~~~~~~~~d~~~L~~~l~~~   77 (367)
                      |+||.+||.+..++.+..|-     .+.|..++|+|+.+|||+.+++.+.|   -.++.|++++.|.|++++||++|.++
T Consensus       173 ~Ya~~~Aryk~~Pe~K~~Gm-----~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~  247 (510)
T KOG0629|consen  173 MYAMNCARYKNFPEVKTKGM-----FALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEA  247 (510)
T ss_pred             HHHHHHHHhhcCchhhhhhh-----hcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHH
Confidence            58999999999998554442     23569999999999999999999988   48999999999999999999999999


Q ss_pred             hhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC
Q psy3048          78 LAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH  157 (367)
Q Consensus        78 ~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~  157 (367)
                      .++|..|.+|..|.|+|..|.+|||+.|+++|++|++|+|||+|+||+.+.+..++.++.|++++|++++++||++++|.
T Consensus       248 k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gapl  327 (510)
T KOG0629|consen  248 KAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPL  327 (510)
T ss_pred             HhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHH
Q psy3048         158 DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL  237 (367)
Q Consensus       158 g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (367)
                      .|+.++++....+.+..+..+.|++..+-                        ++..+.+.|     +-..++|++.+.+
T Consensus       328 qCsa~l~r~~gll~~Cn~~~A~YLFq~dK------------------------~YdvS~DTg-----dK~iQCGRh~D~F  378 (510)
T KOG0629|consen  328 QCSAFLTREEGLLQRCNQMSAIYLFQQDK------------------------FYDVSYDTG-----DKAIQCGRHVDVF  378 (510)
T ss_pred             hhhHHHHHHHHHHHhhcccchhhhhccCc------------------------eeecccccc-----cchhhcCccccHH
Confidence            99999999888888888888999987754                        122233332     3367889999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCC---------------chHHHHH
Q psy3048         238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGD---------------NDLTNQL  300 (367)
Q Consensus       238 ~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~---------------~~~~~~l  300 (367)
                      ++|..++.-|.+|+++.+.++.++|+|+.++|++-++++.+..  |+...++|++.+.               ..+...+
T Consensus       379 KlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkI  458 (510)
T KOG0629|consen  379 KLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKI  458 (510)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHH
Confidence            9999999999999999999999999999999999988776553  6778888876542               1133456


Q ss_pred             HHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         301 YERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       301 ~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      -.++.++|..++++.... .++++|..+.++-.+.+|+|.+++.|+.+.+.
T Consensus       459 K~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~  509 (510)
T KOG0629|consen  459 KERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD  509 (510)
T ss_pred             HHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence            667788887766543322 35699997777788899999999999988654

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=1.6e-38  Score=307.13  Aligned_cols=299  Identities=22%  Similarity=0.279  Sum_probs=239.3

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhh
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLA   79 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~   79 (367)
                      ++||++||+++..+.+..+.      ...+++|++|+.+|+|+.++++..|++++.|+++++ +.+|+++|++++++++ 
T Consensus       115 ~~al~~ar~~~~~~~~~~g~------~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t-  187 (431)
T TIGR01788       115 MLGGLAMKWRWRKRMEAAGK------PTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDENT-  187 (431)
T ss_pred             HHHHHHHHHHHHHHHHhcCC------CCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhCC-
Confidence            36888898765543221111      113579999999999999999999999999999865 6999999999998765 


Q ss_pred             CCCccEEEEEecCCCcccccCChhhHHHHHhhc------CcEEEEeccccccccc--ChhhhhhhCCCCCcceeeecccc
Q psy3048          80 KGLIPCCLVATLGTTGTCAFDNLEELGPICQEY------NIWLHVDAAYAGSALL--LPEYAHLKRGLEYVDSFAFNAHK  151 (367)
Q Consensus        80 ~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~------gi~l~vD~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK  151 (367)
                           .+|++++++|.+|.++|+++|+++|+++      |+|+|||+||+++.++  .++.+..+. ...+|++++|+||
T Consensus       188 -----~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK  261 (431)
T TIGR01788       188 -----IGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHK  261 (431)
T ss_pred             -----eEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECchh
Confidence                 5899999999999999999999999999      9999999999987653  334444333 4578999999999


Q ss_pred             ccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccc
Q psy3048         152 WLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS  231 (367)
Q Consensus       152 ~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (367)
                      |+++|+|+|+++++++..+...+...+.|+.....                                      ++++.++
T Consensus       262 ~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~--------------------------------------~~t~~~s  303 (431)
T TIGR01788       262 YGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEP--------------------------------------TFTLNFS  303 (431)
T ss_pred             ccCCCCCcEEEEEeChHHcchhheecccccCCCCC--------------------------------------CcceecC
Confidence            99999999999998875454444445566643211                                      1233444


Q ss_pred             ccc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCC---chHHHHHHHHHhc
Q psy3048         232 RRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGD---NDLTNQLYERLMS  306 (367)
Q Consensus       232 ~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~---~~~~~~l~~~L~~  306 (367)
                      +++ .+++.|..++.+|.+|++++.++..++++++.++|+++++|+++.+ +.+++|+|++.+.   +..+.++.++|.+
T Consensus       304 R~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~  383 (431)
T TIGR01788       304 RPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRE  383 (431)
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHH
Confidence            543 5678999999999999999999999999999999999999999987 7899999999752   2346789999999


Q ss_pred             cCcEE---EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         307 HKQIY---IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       307 ~g~~~---~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +|+..   ..|....+..++|+++ .++.+.+.++.|++.|++++.++
T Consensus       384 ~G~~~~~~~~p~~~~~~~~lR~~~-~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       384 RGWIVPAYTLPKNAEDIVVMRIVV-REGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             CCCcccCCCCCCccCCeEEEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence            99753   3344567788999965 77888999999999999998765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=100.00  E-value=8.2e-37  Score=295.86  Aligned_cols=264  Identities=32%  Similarity=0.438  Sum_probs=213.7

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhh
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLA   79 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~   79 (367)
                      |+|+++||+++++......  ...   .+.++|++|..+|+|+.+++++.|.+++.++.+. ++++|+++|++++++++.
T Consensus       133 ~lal~aar~~~~~~~~~~~--~~~---~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~  207 (460)
T COG0076         133 LLALLAARERWRKRALAES--GKP---GGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTI  207 (460)
T ss_pred             HHHHHHHHHHHHHHhhhcc--ccc---CCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhcc
Confidence            5799999999986543211  111   2345999999999999999999999999999987 799999999999999986


Q ss_pred             CCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhh-hCCCCCcceeeeccccccccCCc
Q psy3048          80 KGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYVDSFAFNAHKWLLTNHD  158 (367)
Q Consensus        80 ~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p~g  158 (367)
                      .|    +|+.+.|+|++|.+|||++|+++|++||+|+|||+|+|++.++....... ..+++.+|++++++|||+++|+|
T Consensus       208 ~g----~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~  283 (460)
T COG0076         208 GG----VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIG  283 (460)
T ss_pred             Cc----eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCC
Confidence            43    59999999999999999999999999999999999999998866544444 46788899999999999999999


Q ss_pred             ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHH
Q psy3048         159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRAL  237 (367)
Q Consensus       159 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  237 (367)
                      ||++++++++.+.+......+|+....      .+++                               +..+++. ..++
T Consensus       284 ~G~il~rd~e~l~~~~~~~~~yl~~~~------~~~~-------------------------------ti~~sr~~~~~~  326 (460)
T COG0076         284 CGVVLFRDEEALRRILIFADYYLPGGG------IPNF-------------------------------TILGSRPGRQAL  326 (460)
T ss_pred             ceEEEEECHHHhhhhhhcccccCCCCC------cCce-------------------------------eEeeccchHHHH
Confidence            999999999777776666667765431      1222                               2222221 2578


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcE
Q psy3048         238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQI  310 (367)
Q Consensus       238 ~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~  310 (367)
                      ++|+.++.+|.+|+.++.+++.++++++.++|++.+.++++.+|..++|+|++++......+..+.+...|+.
T Consensus       327 ~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~~~gw~  399 (460)
T COG0076         327 ALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQ  399 (460)
T ss_pred             HHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHHhcCce
Confidence            9999999999999999999999999999999999977999999999999999954221133455555555543

>PLN02263 serine decarboxylase

Probab=100.00  E-value=8.9e-37  Score=293.16  Aligned_cols=273  Identities=19%  Similarity=0.225  Sum_probs=219.2

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      |+||++||+++.                 +.++|+|+.+|+|+.+++++.|++++.||++++++||+++|+++|.+++. 
T Consensus       166 L~Al~aARe~~~-----------------~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~-  227 (470)
T PLN02263        166 LHGILVGREVFP-----------------DGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANKD-  227 (470)
T ss_pred             HHHHHHHHhhcC-----------------CcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCCC-
Confidence            579999999631                 34899999999999999999999999999998999999999999987652 


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCc-----EEEEecccccccccChhhhhhhCCCCCcceeeecccccccc
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNI-----WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi-----~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                        .|.+|+.+.|+|++|.+|||++|+++|+++|+     |+|||||+||+.++.-+....+.....+|++++|+|||+++
T Consensus       228 --~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~  305 (470)
T PLN02263        228 --KPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGC  305 (470)
T ss_pred             --CcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCC
Confidence              48899999999999999999999999999997     99999999988764322222223334589999999999999


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-  234 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  234 (367)
                      |.+||++++++.. + ..+...+.|+...+.                                        ++.++|++ 
T Consensus       306 P~~cgvll~R~~~-~-~~~~~~~~Yl~~~d~----------------------------------------ti~gSR~g~  343 (470)
T PLN02263        306 PMPCGVQITRMEH-I-NVLSSNVEYLASRDA----------------------------------------TIMGSRNGH  343 (470)
T ss_pred             CcCEEEEEEehhh-H-hhhccChHhhCCCCC----------------------------------------CcCCCCCcH
Confidence            9999999998643 2 345566777755321                                        23345554 


Q ss_pred             cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE
Q psy3048         235 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK  314 (367)
Q Consensus       235 ~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~  314 (367)
                      .++++|..|+.+|.+|++++++++.++++++.++|+++ |++++..|.+++|+|+.+.     .+.    ..+|+. +..
T Consensus       344 ~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~-----~~~----~~~gW~-L~~  412 (470)
T PLN02263        344 APIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK-----DEE----FVRRWQ-LAC  412 (470)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc-----hHH----hhcceE-Ecc
Confidence            47999999999999999999999999999999999998 7888888889999997542     111    235642 322


Q ss_pred             eEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         315 ASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       315 ~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                         . +..+++++ .++.+.+.+|.|++.|++..+..
T Consensus       413 ---~-~~~~Hivv-mphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        413 ---Q-GNIAHVVV-MPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             ---C-CCcEEEEE-cCCCCHHHHHHHHHHHHHHHhhh
Confidence               1 23689955 67788999999999999987754

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=1.8e-35  Score=293.50  Aligned_cols=288  Identities=19%  Similarity=0.252  Sum_probs=221.8

Q ss_pred             EEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      ++++|+..|||+.+++.+.|+   .++.||+|++++||+++|+++|++..+++..|..||.+.|+|.+|.+|||++|+++
T Consensus       224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l  303 (608)
T TIGR03811       224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVAL  303 (608)
T ss_pred             EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHH
Confidence            899999999999999999998   59999999999999999999999988888888899999999999999999999999


Q ss_pred             H---hhcCc--EEEEeccccccc--ccC------------------------------hhhhhhhCCCCCcceeeecccc
Q psy3048         109 C---QEYNI--WLHVDAAYAGSA--LLL------------------------------PEYAHLKRGLEYVDSFAFNAHK  151 (367)
Q Consensus       109 ~---~~~gi--~l~vD~a~~~~~--~~~------------------------------~~~~~~~~~~~~~D~~~~~~hK  151 (367)
                      |   +++|+  |+|||||+|+..  ++.                              ++....+.+++++|++++++||
T Consensus       304 ~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK  383 (608)
T TIGR03811       304 RNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHK  383 (608)
T ss_pred             HHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCccc
Confidence            9   67898  699999999863  221                              2344567789999999999999


Q ss_pred             ccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccc
Q psy3048         152 WLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS  231 (367)
Q Consensus       152 ~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (367)
                      |++.|++||++++|++. +...+...+.|++....+    .+..                           +..+...++
T Consensus       384 ~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~----~p~~---------------------------~g~~~legS  431 (608)
T TIGR03811       384 MGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGAD----IPAL---------------------------LGAYILEGS  431 (608)
T ss_pred             ccccCCCeEEEEEeCHH-HHHHHhcCcchhcccccc----Cccc---------------------------ccccceecC
Confidence            99999999999999886 445567788898654321    1100                           022334444


Q ss_pred             cc-ccHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhcC------CCCeEE--eCCCCceeEEEEEcCC-------
Q psy3048         232 RR-FRALKLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEK------DDRFEL--VCPPSMGLVCFRLKGD-------  293 (367)
Q Consensus       232 ~~-~~~~~~~~~l~~~--~~~g~~~~~~~~~~la~~l~~~L~~------~~g~~~--~~~~~~~~v~f~~~~~-------  293 (367)
                      +. +.++++|++++.+  |.+|+.++++++.++++++.+.|++      .+.+++  +.+|.+++|+|++.+.       
T Consensus       432 R~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~  511 (608)
T TIGR03811       432 KAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVK  511 (608)
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHH
Confidence            42 5689999999998  9999999999999999999999988      456776  6788999999998642       


Q ss_pred             -chHHHHHHHHHh-ccC-----cEEEEEeEE--------------------------CCeeEEEEEecCCCCCH-HHHHH
Q psy3048         294 -NDLTNQLYERLM-SHK-----QIYIIKASF--------------------------QGRPFLRFVVTSPETNQ-CDVAF  339 (367)
Q Consensus       294 -~~~~~~l~~~L~-~~g-----~~~~~~~~~--------------------------~~~~~lRi~~~~~~~~~-edid~  339 (367)
                       +..++++++++. ..|     .++++.+.+                          ..-.++|.++++|+.++ +-++.
T Consensus       512 ~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~  591 (608)
T TIGR03811       512 MNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDE  591 (608)
T ss_pred             HHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHH
Confidence             223344555443 122     122222211                          12347999888887554 77788


Q ss_pred             HHHHHHHHHHHh
Q psy3048         340 AWNEISHQSSEM  351 (367)
Q Consensus       340 li~~l~~~~~~~  351 (367)
                      +++.|++..++.
T Consensus       592 ~~~~~~~~~~~~  603 (608)
T TIGR03811       592 YAPKIKAAMQEK  603 (608)
T ss_pred             HHHHHHHHHHHH
Confidence            888887766553

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=1.4e-34  Score=274.28  Aligned_cols=255  Identities=21%  Similarity=0.236  Sum_probs=202.9

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      +|++|..+|+|+.+++++.|.+++.||++.+|++|+++|++++++++.   .|.+|++++++|.+|.++|+++|+++|++
T Consensus       113 ~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~---~~~lvv~tagtt~tG~idpi~eI~~i~~~  189 (374)
T PLN03032        113 ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRD---KPAILNVNIGTTVKGAVDDLDRILRILKE  189 (374)
T ss_pred             EEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCC---CCEEEEEEecCcCCccCCCHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999987542   36789999999999999999999999999


Q ss_pred             cC-----cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         112 YN-----IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       112 ~g-----i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ||     +|+|||+|++++.++.......+.....+|++++|+|||+++|.|+|++++++.. + ..+...+.|+...  
T Consensus       190 ~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Yl~~~--  265 (374)
T PLN03032        190 LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEYLNSR--  265 (374)
T ss_pred             hCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcccCCC--
Confidence            96     5999999999877653211111111234799999999999999999999998643 3 2344556776442  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                            ++++.++|+ +.++++|+.|+.+|.+|+.++.+++.++++|+
T Consensus       266 --------------------------------------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l  307 (374)
T PLN03032        266 --------------------------------------DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYL  307 (374)
T ss_pred             --------------------------------------CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence                                                  234455554 57899999999999999999999999999999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .++|++. +++++..|.+++|+|+.+.    .+.    +. +|+. +..  .  +..+|+++ +++++++.+|.|++.|+
T Consensus       308 ~~~l~~~-~~~~~~~p~~~~V~f~~~~----~~~----~~-~~w~-l~~--~--~~~~hi~v-m~~~~~~~id~fi~dl~  371 (374)
T PLN03032        308 KDRLTEA-GLTCRLNELSSTVVFERPM----DEA----FI-KKWQ-LAC--E--GDIAHVVV-MPNVTVEKLDEFVEELV  371 (374)
T ss_pred             HHHHHhC-CCcEEECCCceEEEEcCCC----cHh----Hh-heee-ecc--c--CCEEEEEE-CCCCCHHHHHHHHHHHh
Confidence            9999986 8888888888999997653    112    22 4532 321  1  23899955 68888999999999987


Q ss_pred             HH
Q psy3048         346 HQ  347 (367)
Q Consensus       346 ~~  347 (367)
                      +.
T Consensus       372 ~~  373 (374)
T PLN03032        372 EV  373 (374)
T ss_pred             cc
Confidence            63

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=1e-33  Score=270.10  Aligned_cols=258  Identities=24%  Similarity=0.313  Sum_probs=204.2

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      .+|++|+.+|+|+.++++..|.+.+.|+++++|++|+++|+++++++   +..|.+|++++++|.+|.++|+++|+++|+
T Consensus       111 ~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~  187 (380)
T PRK02769        111 GTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILK  187 (380)
T ss_pred             cEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence            48999999999999999999999999999888999999999999876   334679999999999999999999999999


Q ss_pred             hcC---cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 EYN---IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~~g---i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +||   +|+|||+||+++.++.......+.....+|++++++|||+++|.|+|+++++++. +.. +.....|+...   
T Consensus       188 ~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~~~-~~~~~~yl~~~---  262 (380)
T PRK02769        188 KIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-VER-ISVDVDYIGSR---  262 (380)
T ss_pred             HhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-hhh-cccCccccCCC---
Confidence            998   7999999999987754221111121225799999999999999999999998643 322 22334454321   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                           +++..++++ +.++++|++|+.+|.+|++++.+++.++++|+.
T Consensus       263 -------------------------------------d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~  305 (380)
T PRK02769        263 -------------------------------------DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAV  305 (380)
T ss_pred             -------------------------------------CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence                                                 123344443 467999999999999999999999999999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      ++|++. |++++.+|.+++|+|+.+.     +++.     +|+. +.+.    +..+|+++ .++++++.||.|++.|.+
T Consensus       306 ~~L~~~-g~~~~~~p~~~~v~f~~~~-----~~~~-----~~w~-l~~~----~~~~hi~~-~~~~~~~~~~~f~~dl~~  368 (380)
T PRK02769        306 DRLQAN-GIPAWRNPNSITVVFPCPS-----ERIW-----KKWH-LATS----GNQAHIIT-MPHHNKQQIDSLIDELIF  368 (380)
T ss_pred             HHHHhC-CCEEEcCCCceEEEEcCCC-----HHHH-----hCee-Eccc----CCEEEEEE-CCCCCHHHHHHHHHHHHH
Confidence            999885 9999999999999997543     2332     4532 3221    23899954 788899999999999988


Q ss_pred             HHHH
Q psy3048         347 QSSE  350 (367)
Q Consensus       347 ~~~~  350 (367)
                      ....
T Consensus       369 ~~~~  372 (380)
T PRK02769        369 DLKN  372 (380)
T ss_pred             HHhc
Confidence            7653

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=3e-33  Score=265.67  Aligned_cols=270  Identities=41%  Similarity=0.629  Sum_probs=218.4

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      +++.++++++..+.+..+.     ...++.+|++++.+|+++.+++...|++++.+++++++.+|+++|++++++..+++
T Consensus        72 ~al~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~  146 (345)
T cd06450          72 LALLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEG  146 (345)
T ss_pred             HHHHHHHHHhhhhhhcccc-----cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCC
Confidence            4666776665544322110     01235799999999999999999999999999998788999999999998765555


Q ss_pred             CccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCccee
Q psy3048          82 LIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSA  161 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~  161 (367)
                      ..+.+|++++++|++|.++|+++|+++|++||+|+|+|+||+.+.++.+...........+|++++++|||+++|+|+|+
T Consensus       147 ~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~  226 (345)
T cd06450         147 LNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA  226 (345)
T ss_pred             CCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHH
Confidence            55678899999999999999999999999999999999999988765543333223344679999999999999999998


Q ss_pred             EEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHH
Q psy3048         162 MWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWM  241 (367)
Q Consensus       162 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (367)
                      ++++                                                                      .+++|+
T Consensus       227 ~~~~----------------------------------------------------------------------~~~~~~  236 (345)
T cd06450         227 VLVR----------------------------------------------------------------------ALKLWA  236 (345)
T ss_pred             HHHH----------------------------------------------------------------------HHHHHH
Confidence            7653                                                                      145677


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC---chHHHHHHHHHhccCcEEEEEeEEC
Q psy3048         242 TLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD---NDLTNQLYERLMSHKQIYIIKASFQ  318 (367)
Q Consensus       242 ~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~---~~~~~~l~~~L~~~g~~~~~~~~~~  318 (367)
                      +++.++.+|++++.++..++++++.+.|+++++++++.++..++++|++++.   +..+.++.++|.++|.+++.+..+.
T Consensus       237 ~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~  316 (345)
T cd06450         237 TLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLG  316 (345)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEEC
Confidence            7888889999999999999999999999999999988777889999998652   2345689999999976666655555


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      +..++|++++.++++++|+|+++++|++
T Consensus       317 ~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         317 GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            6779999887667799999999999976

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-33  Score=266.29  Aligned_cols=279  Identities=20%  Similarity=0.191  Sum_probs=212.3

Q ss_pred             cCceEEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          28 KSRLVAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .+.-.|++|+.+|.|.    ...++..|+++++++.+++|.++.+++++.+.+.|+      +|++++.+|.+|++.|++
T Consensus       109 ~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tk------lvais~vSn~tG~~~pv~  182 (405)
T COG0520         109 KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTK------LVALSHVSNVTGTVNPVK  182 (405)
T ss_pred             cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCce------EEEEECccccccccchHH
Confidence            3446788899999995    455566799999999998999999999999988885      999999999999999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|+++||++|++++||+||+.+.++.+...     + .||++++++|||+++|.|+|++|++++. +...    .++...
T Consensus       183 ~I~~la~~~ga~v~VDaaq~~~h~~idv~~-----l-~~Df~afsgHKwl~gP~GiGvLy~r~~~-l~~l----~P~~~g  251 (405)
T COG0520         183 EIAELAHEHGALVLVDAAQAAGHLPIDVQE-----L-GCDFLAFSGHKWLLGPTGIGVLYVRKEL-LEEL----EPFLGG  251 (405)
T ss_pred             HHHHHHHHcCCEEEEECccccCccCCCchh-----c-CCCEEEEcccccccCCCceEEEEEchHH-Hhhc----CCcccC
Confidence            999999999999999999999888765422     2 5699999999999999999999997643 3322    232222


Q ss_pred             CCC-CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         184 TDA-PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      +.. +..+....+        .+..++.-.++++.+              -...+.+.++++.+...|++++.++.++++
T Consensus       252 g~~~~~~~~~~~~--------~~~~~p~rfe~gTpn--------------~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~  309 (405)
T COG0520         252 GGMIEYVSRDEGV--------TLAELPLRFEAGTPN--------------IAGAIGLAAALDYLLEIGMEAIEAHERELT  309 (405)
T ss_pred             CCceeeecccccc--------cccCcchhhccCCch--------------HHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            221 000000000        111111122222221              123467778899999999999999999999


Q ss_pred             HHHHHHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECC---------eeEEEEEecCC
Q psy3048         263 KKFADLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQG---------RPFLRFVVTSP  330 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---------~~~lRi~~~~~  330 (367)
                      +|+.++|+++|+++++.++   ..++++|.+.+.  .+.++...|.++| +.+..+....         ...+|+|+ +.
T Consensus       310 ~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~--~~~dv~~~L~~~g-I~vr~g~~ca~p~~~~~~~~~~iR~S~-~~  385 (405)
T COG0520         310 EYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI--HPHDVATLLDEKG-IAVRAGHHCAQPLHRLLGVDATIRASL-HL  385 (405)
T ss_pred             HHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC--CHHHHHHHHHhCC-eEEEeccccccHHHHhcCCCCceEEEE-ee
Confidence            9999999999999999875   689999999763  3789999999999 4443332222         22399976 79


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~  349 (367)
                      |||+||||+|+++|+++.+
T Consensus       386 YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         386 YNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             cCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999864

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.96  E-value=5.2e-28  Score=231.93  Aligned_cols=264  Identities=20%  Similarity=0.257  Sum_probs=199.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +..|++++.+|+++.++++..|++++.|+.++++.+|+++|++++++++      .+|++++++|++|.+.|+++|.++|
T Consensus       104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~vi~~~~~~~tG~~~~l~~I~~l~  177 (371)
T PRK13520        104 KPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT------IGIVGIAGTTELGQVDPIPELSKIA  177 (371)
T ss_pred             CceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC------EEEEEEcCCcCCcccCCHHHHHHHH
Confidence            4578889999999999999999999999988888999999999998764      3677788889999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhh--hhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++|||++|+++.+......  ... ....+|++++++|||+.+|.++|+++++++..+.. +....+|+..... 
T Consensus       178 ~~~g~~livD~a~~~~~~~~~~~~~~~~~-~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~-l~~~~~~~~~~~~-  254 (371)
T PRK13520        178 LENGIFLHVDAAFGGFVIPFLDDPPNFDF-SLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDA-LAVDTPYLTSKKQ-  254 (371)
T ss_pred             HHcCCCEEEEecchhHHHHhhcCCCCccc-cCCCCceEEECCccccCccCCceEEEEcCHHHHHh-hcccCccccCCCC-
Confidence            999999999999987654321110  111 12346999999999999899999999876654432 2222233322110 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                             +                               ...+++ .....+++++++.++.+|++++.++..++++++.
T Consensus       255 -------~-------------------------------~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~  296 (371)
T PRK13520        255 -------A-------------------------------TLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLA  296 (371)
T ss_pred             -------c-------------------------------ceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHH
Confidence                   0                               000111 0224677888888888999999999999999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      ++|+++ |++++.++..++++|.+++    ..++.++|.++|+. +..  ..+..++|+++ ++++|++||+++++.|++
T Consensus       297 ~~L~~~-g~~~~~~~~~~~v~~~~~~----~~~v~~~L~~~gi~-v~~--~~~~~~iRis~-~~~~t~edi~~~~~~l~~  367 (371)
T PRK13520        297 EELKER-GFEPVIEPVLNIVAFDDPN----PDEVREKLRERGWR-VSV--TRCPEALRIVC-MPHVTREHIENFLEDLKE  367 (371)
T ss_pred             HHHHhC-CCEEecCCCceEEEEecCC----HHHHHHHHHHCCce-ecc--CCCCCEEEEEE-ECCCCHHHHHHHHHHHHH
Confidence            999988 8885556667888887652    56888899888843 332  23345899976 568999999999999998


Q ss_pred             HHH
Q psy3048         347 QSS  349 (367)
Q Consensus       347 ~~~  349 (367)
                      +++
T Consensus       368 ~~~  370 (371)
T PRK13520        368 VKK  370 (371)
T ss_pred             Hhh
Confidence            754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.96  E-value=2.5e-27  Score=227.44  Aligned_cols=258  Identities=20%  Similarity=0.277  Sum_probs=193.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|+++.++++..|++++.+++++++.+|+++|++++++.+      ..++.++++|++|.++|+++|.++||
T Consensus       107 ~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~~------~~vv~~~~~~~tG~~~~~~~i~~l~~  180 (373)
T TIGR03812       107 PNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDNT------IGIVGIAGTTELGQIDDIEELSKIAL  180 (373)
T ss_pred             cEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhCc------EEEEEECCCCCCCccCCHHHHHHHHH
Confidence            467788999999999999999999999998889999999999997754      24555557899999999999999999


Q ss_pred             hcCcEEEEecccccccccCh-------hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         111 EYNIWLHVDAAYAGSALLLP-------EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|+++|||+||+++.+...       .....   ...+|++++++|||+.+|.++|++++++++.+.. +....+|+..
T Consensus       181 ~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~---~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~-l~~~~~~~~~  256 (373)
T TIGR03812       181 ENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS---LPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKY-LSVDAPYLTV  256 (373)
T ss_pred             HcCCeEEEEcCchhHHHHHHhcCCCCCCcccc---CCCCCEEEECccccCCCcCCceEEEEeCHHHHhh-hcccCcccCC
Confidence            99999999999987654221       11111   1245999999999998898898888766654432 2222233322


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...                                       +...+++ .....+++++++.++.+|++++.++..+++
T Consensus       257 ~~~---------------------------------------~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~  297 (373)
T TIGR03812       257 KKQ---------------------------------------ATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENT  297 (373)
T ss_pred             CCC---------------------------------------cceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            110                                       0000111 123467788888888999999999999999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++++++|+++ |++.+.++..++++|++++    ..++.++|.++|++ +...  .++.++|+++ +++++++|+|++++
T Consensus       298 ~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~----~~~v~~~L~~~gi~-v~~~--~~~~~iRis~-~~~~t~edid~l~~  368 (373)
T TIGR03812       298 RYLVEELKKI-GFEPVIEPVLNIVAFEVDD----PEEVRKKLRDRGWY-VSVT--RCPKALRIVV-MPHVTREHIEEFLE  368 (373)
T ss_pred             HHHHHHHHhC-CCeEEcCCCceEEEEEeCC----HHHHHHHHHHCCce-eccC--CCCCEEEEEE-ECCCCHHHHHHHHH
Confidence            9999999998 5655555678888888753    35788899988853 4322  2456899976 56889999999999


Q ss_pred             HHHH
Q psy3048         343 EISH  346 (367)
Q Consensus       343 ~l~~  346 (367)
                      +|++
T Consensus       369 ~L~~  372 (373)
T TIGR03812       369 DLKE  372 (373)
T ss_pred             HHhh
Confidence            9976

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.96  E-value=3.6e-27  Score=218.88  Aligned_cols=264  Identities=17%  Similarity=0.155  Sum_probs=201.3

Q ss_pred             CceEEEecCCcchhHHHHHHhC---CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIG---DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~---g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .+-.|++|..+|.++.+.+++.   |++|.+++++.+|.+|+++|+++|+++|      .+|++.+.+|.+|++.||++|
T Consensus        90 ~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T------~LVSim~aNnE~G~IQpI~ei  163 (386)
T COG1104          90 KGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDT------ILVSIMHANNETGTIQPIAEI  163 (386)
T ss_pred             CCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCc------eEEEEEecccCeeecccHHHH
Confidence            3568999999999999999886   9999999999999999999999999987      699999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +++||++|+++|+|++|+.|-++.+...   .   .+|++++|+||+ .+|.|+|++|+++.-.+       .+.+..+.
T Consensus       164 ~~i~k~~~i~fHvDAvQa~Gkipi~~~~---~---~vD~ls~SaHK~-~GpkGiGaLyv~~~~~~-------~p~i~GGg  229 (386)
T COG1104         164 GEICKERGILFHVDAVQAVGKIPIDLEE---L---GVDLLSFSAHKF-GGPKGIGALYVRPGVRL-------EPLIHGGG  229 (386)
T ss_pred             HHHHHHcCCeEEEehhhhcCceeccccc---c---CcceEEeehhhc-cCCCceEEEEECCCCcc-------CceeccCc
Confidence            9999999999999999999888765322   1   259999999996 55999999999654322       23344443


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      +                          +.+.|+|+.-          -....++..+++ +..+.++....+...+.++|
T Consensus       230 Q--------------------------E~g~RsGTen----------v~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l  272 (386)
T COG1104         230 Q--------------------------ERGLRSGTEN----------VPGIVGFGKAAE-IAVEELEEENARLRKLRDRL  272 (386)
T ss_pred             C--------------------------CCCCCCCCcc----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            3                          1233444320          011233333333 24566777888899999999


Q ss_pred             HHHhcCC-CCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--------------------CCee
Q psy3048         266 ADLVEKD-DRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--------------------QGRP  321 (367)
Q Consensus       266 ~~~L~~~-~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------------~~~~  321 (367)
                      .+.|.+. |++.+.+.+   -.++++|.+++..  .+.+.-.|...| ++++.++.                    ....
T Consensus       273 ~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~--gE~ll~~L~~~g-I~vStGSACsS~~~~pShVL~AmG~~~e~a~~  349 (386)
T COG1104         273 EDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE--GESLLLALDLAG-IAVSTGSACSSGSLEPSHVLRAMGISEELAHG  349 (386)
T ss_pred             HHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCc--HHHHHHhccccC-eEEeccccccCCCCCccHHHHHcCCChHHhCc
Confidence            9999875 888887643   3467788877533  566777777777 44543211                    1246


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      .+|||+ ..+||++|+|++++.+++++++++.
T Consensus       350 siR~S~-g~~tt~eei~~~~~~l~~~i~~lr~  380 (386)
T COG1104         350 SIRFSL-GRFTTEEEIDAAAEALKEIIKRLRE  380 (386)
T ss_pred             cEEEEc-CCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            899987 6899999999999999999998764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.95  E-value=1.6e-26  Score=224.02  Aligned_cols=278  Identities=15%  Similarity=0.075  Sum_probs=198.5

Q ss_pred             CceEEEecCCcchh----HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s----~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|++++.+|++    +...++..|+++++++.+.++.+|++++++++++++      .+|++++++|++|.+.|+++
T Consensus       108 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t------~lv~i~~~~n~tG~~~~~~~  181 (401)
T PRK10874        108 PGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRT------RILALGQMSNVTGGCPDLAR  181 (401)
T ss_pred             CcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCc------EEEEEeCCcccccCcCCHHH
Confidence            34578888999977    445567789999999998788999999999997766      48889999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |+++|+++|+++++|++|+.+.++.+.     ... .+|++++++||+ ++|+|+|+++.++ +.++..    .++...+
T Consensus       182 i~~l~~~~g~~~ivD~a~~~g~~~~~~-----~~~-~~d~~~~s~~K~-~gp~G~G~l~~~~-~~~~~~----~~~~~~~  249 (401)
T PRK10874        182 AITLAHQAGMVVMVDGAQGAVHFPADV-----QAL-DIDFYAFSGHKL-YGPTGIGVLYGKS-ELLEAM----SPWQGGG  249 (401)
T ss_pred             HHHHHHHcCCEEEEECCcccccccCCc-----hhc-CCCEEEEecccc-cCCCccEEEEEch-HHHhcC----CCeecCC
Confidence            999999999999999999876654432     111 359999999995 5699999999864 333321    1122111


Q ss_pred             CCCCCCCCCCchhhhhhcccCC-CcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALG-LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ..   .....     |...... .|               ..+..........+++.+++..+...|++++.++..++++
T Consensus       250 ~~---~~~~~-----~~~~~~~~~~---------------~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~  306 (401)
T PRK10874        250 KM---LTEVS-----FDGFTPQSAP---------------WRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLAT  306 (401)
T ss_pred             cc---eEeec-----cCccCCCCCh---------------hhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            10   00000     0000000 00               1111111111244677778887777888888999999999


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCCH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~~  334 (367)
                      ++.+.|++++|++++.++..++++|.+++.  ...++.+.|.++|+. +..+..         ...+++|+|+ +.++|+
T Consensus       307 ~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~--~~~~~~~~L~~~gI~-v~~g~~~~~~~~~~~g~~~~iRiS~-~~~nt~  382 (401)
T PRK10874        307 LAEDALAKLPGFRSFRCQDSSLLAFDFAGV--HHSDLVTLLAEYGIA-LRAGQHCAQPLLAALGVTGTLRASF-APYNTQ  382 (401)
T ss_pred             HHHHHHhcCCCEEEeCCCCCcEEEEEECCc--CHHHHHHHHHHCCcE-EeccccchHHHHHHhCCCCEEEEEe-cccCCH
Confidence            999999999999988777778888887542  246888888888854 333221         1146899976 688999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy3048         335 CDVAFAWNEISHQSSEM  351 (367)
Q Consensus       335 edid~li~~l~~~~~~~  351 (367)
                      +||++++++|+++++.+
T Consensus       383 edid~ll~al~~~~~~~  399 (401)
T PRK10874        383 SDVDALVNAVDRALELL  399 (401)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999987754

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.95  E-value=2.4e-26  Score=222.61  Aligned_cols=278  Identities=14%  Similarity=0.055  Sum_probs=196.9

Q ss_pred             ceEEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++.+|++.    ...++..|++++.++.+.++.+|+++|++++++++      .+|++++++|++|.+.|+++|
T Consensus       106 gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t------~lv~i~~~~n~tG~~~~~~~i  179 (398)
T TIGR03392       106 GDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRT------RILALGQMSNVTGGCPDLARA  179 (398)
T ss_pred             CCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCc------eEEEEECccccccccCCHHHH
Confidence            34788889999873    44567789999999998778899999999997765      488899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +++||++|+++++|++|+.+....+...   .   .+|++++++||+ ++|.|+|+++.++. .++..    +++.....
T Consensus       180 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~---~~d~~~~s~~K~-~gp~G~G~l~~~~~-~~~~~----~~~~~~~~  247 (398)
T TIGR03392       180 ITLAHQYGAVVVVDGAQGVVHGPPDVQA---L---DIDFYAFSGHKL-YGPTGIGVLYGKTE-LLEAM----PPWQGGGK  247 (398)
T ss_pred             HHHHHHcCCEEEEEhhhhcCCCCCChhh---c---CCCEEEEecccc-cCCCceEEEEEcHH-HHhhC----CCeecCCc
Confidence            9999999999999999987655432211   1   359999999995 56889999987543 33221    11221111


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .........+       .....|               ..+..........+++.++++.+...|++++.++..++++++
T Consensus       248 ~~~~~~~~~~-------~~~~~~---------------~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l  305 (398)
T TIGR03392       248 MLSHVSFDGF-------IPQAVP---------------HRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLA  305 (398)
T ss_pred             eEeecccccc-------ccCCCh---------------hhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            0000000000       000001               011110111123467778888777778889999999999999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCCHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~~ed  336 (367)
                      .+.|++++|+++..++..++++|.+++.  ...++.+.|.++|+ .+..+..         ...+++|+|+ ++++|++|
T Consensus       306 ~~~l~~l~g~~~~~~~~~~i~~~~~~~~--~~~~l~~~L~~~gI-~v~~g~~~~~~~~~~~g~~~~iRvS~-~~~~t~~e  381 (398)
T TIGR03392       306 EERLAQLPGFRSFRCPGSSLLAFDFAGV--HHSDLAALLAESGI-ALRAGQHCAQPLMAALGVSGTLRASF-APYNTQQD  381 (398)
T ss_pred             HHHHhcCCCeEEeCCCCCcEEEEEeCCc--CHHHHHHHHHhCCE-EEecCccchHHHHHHhCCCCEEEEEe-eccCCHHH
Confidence            9999999999988766778888887642  25688888888874 4443321         1135899976 68899999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3048         337 VAFAWNEISHQSSEM  351 (367)
Q Consensus       337 id~li~~l~~~~~~~  351 (367)
                      |++++++|+++++++
T Consensus       382 i~~l~~~l~~~~~~~  396 (398)
T TIGR03392       382 VDALVDAVGAALELL  396 (398)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>KOG1383|consensus

Probab=99.95  E-value=5.6e-27  Score=217.59  Aligned_cols=298  Identities=20%  Similarity=0.222  Sum_probs=231.7

Q ss_pred             hHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCC
Q psy3048           3 SILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      ++++|+.++..+.++. +.      ...+.++++.+.|.++.+++++++.+++.|+++ .++++|+....+.+++++   
T Consensus       150 s~l~~~k~~~~~r~~~-k~------I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNt---  219 (491)
T KOG1383|consen  150 SGLAAKKSYRNRRKAQ-KG------IDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDENT---  219 (491)
T ss_pred             HHHHHHHHHHHHHHhc-cC------CCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccce---
Confidence            4456666666665543 21      446678889999999999999999999999998 679999999999999998   


Q ss_pred             CccEEEEEecCCCcccccCChhhHHHHHhh-cCcEEEEecccccccccC-----hhhhhhhCCCCCcceeeecccccccc
Q psy3048          82 LIPCCLVATLGTTGTCAFDNLEELGPICQE-YNIWLHVDAAYAGSALLL-----PEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~-~gi~l~vD~a~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                         ++++.+.+++++|.++|+++|+++..+ |++++|||+|.|++..+.     .+++++.++   +-+++.++||+..+
T Consensus       220 ---i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~---V~Sisa~~HKYGl~  293 (491)
T KOG1383|consen  220 ---IMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPG---VTSISADGHKYGLA  293 (491)
T ss_pred             ---EEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCC---ceeEeeccceeeee
Confidence               589999999999999999999999999 999999999999877641     244444444   49999999999999


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR  235 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (367)
                      |.|+|++++++.+.+...      |+.              ..+|.|..+.+|+.+.   +++|++              
T Consensus       294 ~~G~~~vl~r~k~~~~~q------~~~--------------~~~w~Gg~y~s~Tlng---SR~g~~--------------  336 (491)
T KOG1383|consen  294 PAGSSWVLYRNKELLPHQ------LFF--------------HTDWLGGIYASPTLNG---SRPGSQ--------------  336 (491)
T ss_pred             ecCcEEEEEcccccccce------EEE--------------eccccCccccCccccc---CCcccH--------------
Confidence            999999999887655322      121              2356666666665422   334432              


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe
Q psy3048         236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA  315 (367)
Q Consensus       236 ~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~  315 (367)
                      .++.|+++-.+|.+|+.+..+++.+.+.++++.|++++++.++.+|....+.|.-..  -.-.++.+.|...||+.... 
T Consensus       337 va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~--~~i~elsd~l~~~GW~lnal-  413 (491)
T KOG1383|consen  337 VAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND--VNIFELSDLLRKKGWILNAL-  413 (491)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc--cchhhhhHHHHhcCcCcccc-
Confidence            368899999999999999999999999999999999999999998765555553221  12358889999999865432 


Q ss_pred             EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy3048         316 SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSS  358 (367)
Q Consensus       316 ~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~~  358 (367)
                        +-+..+.++++..+..++-.|+|+..|+++++++....++.
T Consensus       414 --q~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~~~  454 (491)
T KOG1383|consen  414 --QFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLPESK  454 (491)
T ss_pred             --CCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence              22235555555555567778999999999999987666544

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.95  E-value=4.7e-26  Score=221.13  Aligned_cols=276  Identities=14%  Similarity=0.088  Sum_probs=195.5

Q ss_pred             ceEEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++.+|.+.    ...++..|++++.++.++++.+|+++|++++++++      .+|++++++|++|.+.|+++|
T Consensus       113 gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t------~lv~l~~~~n~tG~~~~~~~i  186 (406)
T PRK09295        113 GDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERT------RLLAITHVSNVLGTENPLAEM  186 (406)
T ss_pred             cCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCc------EEEEEecchhcccccCCHHHH
Confidence            44678888898874    44556689999999998889999999999997655      489999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +++||++|+++++|++|+.+..+.+..     . ..+|++++++|| +++|.|+|+++++++ .+...    +++.....
T Consensus       187 ~~~~~~~~~~vivD~a~~~g~~~~~~~-----~-~~~D~~~~s~~K-~~gp~G~G~l~~~~~-~~~~~----~~~~~g~~  254 (406)
T PRK09295        187 IALAHQHGAKVLVDGAQAVMHHPVDVQ-----A-LDCDFYVFSGHK-LYGPTGIGILYVKEA-LLQEM----PPWEGGGS  254 (406)
T ss_pred             HHHHHHcCCEEEEEcccccCccccCch-----h-cCCCEEEeehhh-ccCCCCcEEEEEchH-hHhhC----CCcccCCc
Confidence            999999999999999998876544321     1 135999999999 556999999999653 23221    22222211


Q ss_pred             C-CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         186 A-PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      . ........+   .+    ...|               ..+..........+++.++++.+...|++++.++..+++++
T Consensus       255 ~~~~~~~~~~~---~~----~~~~---------------~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  312 (406)
T PRK09295        255 MIATVSLTEGT---TW----AKAP---------------WRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHY  312 (406)
T ss_pred             eeeeeecCCcc---cc----CCch---------------hhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            0 000000000   00    0000               11111111112346777888888777999999999999999


Q ss_pred             HHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCCH
Q psy3048         265 FADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~~  334 (367)
                      +.+.|++++|++++.+ +..++++|.+++  ....++.+.|.++|+ .+..+..         ..++++|+|+ +.+||+
T Consensus       313 l~~~l~~~~~~~~~~~~~~~~iv~~~~~~--~~~~~~~~~L~~~gI-~v~~g~~c~~~~~~~~~~~~~iRiS~-~~ynt~  388 (406)
T PRK09295        313 ALSQLESVPDLTLYGPQNRLGVIAFNLGK--HHAYDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASL-AMYNTH  388 (406)
T ss_pred             HHHHHhcCCCEEEeCCCCCceEEEEEECC--cCHHHHHHHHHhCCe-EEeccccchHHHHHHHCCCCEEEEEc-cCCCCH
Confidence            9999999999999875 346888998864  235678888877774 4432211         1135799976 799999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQSS  349 (367)
Q Consensus       335 edid~li~~l~~~~~  349 (367)
                      +|||+++++|+++.+
T Consensus       389 ~did~l~~~l~~i~~  403 (406)
T PRK09295        389 EEVDRLVAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999854

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.95  E-value=6.5e-26  Score=217.87  Aligned_cols=271  Identities=16%  Similarity=0.198  Sum_probs=194.3

Q ss_pred             CceEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|+++..+|.++...    ++..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++
T Consensus        85 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~------~~v~~~~~~n~tG~~~~~~~  158 (376)
T TIGR01977        85 EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNT------KLIVVSHASNVTGTILPIEE  158 (376)
T ss_pred             CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCC------eEEEEECCCCCccccCCHHH
Confidence            345677788899886543    44569999999988788999999999996644      58889999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |.++||++|+++++|++|+.+..+.+..      ...+|++++++|||+++|.|+|++++++...+.........+. ..
T Consensus       159 i~~l~~~~~~~livD~a~~~g~~~~~~~------~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~-~~  231 (376)
T TIGR01977       159 IGELAQENGIFFILDAAQTAGVIPIDMT------ELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSH-SA  231 (376)
T ss_pred             HHHHHHHcCCEEEEEhhhccCccCCCch------hcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccc-cc
Confidence            9999999999999999998877654321      1246999999999999999999999976542221110000000 00


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                               .+          ..+.. +.          ..+..........+++..+++.+...|++++.++..+++++
T Consensus       232 ---------~~----------~~~~~-~~----------~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       232 ---------LI----------DQPSE-LP----------DRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             ---------cc----------ccccc-ch----------hhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence                     00          00000 00          00110001112236667788888888999999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE-----------CCeeEEEEEec
Q psy3048         265 FADLVEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF-----------QGRPFLRFVVT  328 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-----------~~~~~lRi~~~  328 (367)
                      +.+.|.+++|++++.+.    ..++++|.+++.  ...++.+.|.++ | +.+..+.+           .....+|+++ 
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~L~~~~g-i~v~~g~~~~~~~~~~~g~~~~~~iRis~-  357 (376)
T TIGR01977       282 LLNGLREINKVKIYGPADPANRVGVVSFTVEGI--DSEEVADILDEKFD-IATRTGLHCAPLAHKTIGTFATGTIRLSL-  357 (376)
T ss_pred             HHHHHhcCCCeEEeCCCCccccCCeEEEEECCC--CHHHHHHHHhccCC-EEEEcccccchHHHHHhCCCCCCeEEEec-
Confidence            99999999999988642    357888888642  356888889887 5 44443221           1346899975 


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy3048         329 SPETNQCDVAFAWNEISH  346 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~  346 (367)
                      +.++|++||++++++|++
T Consensus       358 ~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       358 GYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            789999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.95  E-value=1.6e-25  Score=218.55  Aligned_cols=278  Identities=12%  Similarity=0.062  Sum_probs=195.3

Q ss_pred             ceEEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++.+|.+.    ...++..|++++.++++.++.+|+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus       122 gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t------~lv~i~~~~n~tG~~~~~~~I  195 (424)
T PLN02855        122 GDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKT------KLVATHHVSNVLGSILPVEDI  195 (424)
T ss_pred             cCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCc------eEEEEeCccccccccCCHHHH
Confidence            44688888889874    34456689999999987777899999999997654      488999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +++||++|+++++|++|+.+..+.+.     ... .+|++++++|| +++|.|+|+++++.. .+.+.    ++++....
T Consensus       196 ~~l~~~~g~~vivD~a~~~g~~~~~~-----~~~-~~d~~~~s~~K-~~gp~G~G~l~~~~~-~~~~~----~p~~~g~~  263 (424)
T PLN02855        196 VHWAHAVGAKVLVDACQSVPHMPVDV-----QTL-GADFLVASSHK-MCGPTGIGFLWGKSD-LLESM----PPFLGGGE  263 (424)
T ss_pred             HHHHHHcCCEEEEEhhhhcCCcCCCc-----hhc-CCCEEEeeccc-ccCCCccEEEEEchh-hhhcC----CCEecCCC
Confidence            99999999999999999876554321     111 35999999999 567999999999643 33221    22221111


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .    ....+  .++.. ....+               ..|..........+++.++++.+...|++++.++..++++++
T Consensus       264 ~----~~~~~--~~~~~-~~~~~---------------~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l  321 (424)
T PLN02855        264 M----ISDVF--LDHST-YAPPP---------------SRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYL  321 (424)
T ss_pred             c----eeeee--cCccc-cCCCh---------------hhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            0    00000  00000 00001               011111111123366677788777779999999999999999


Q ss_pred             HHHhcCCCCeEEeCCC------CceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---------CCeeEEEEEecC
Q psy3048         266 ADLVEKDDRFELVCPP------SMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---------QGRPFLRFVVTS  329 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~------~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---------~~~~~lRi~~~~  329 (367)
                      .+.|++++|++++.+.      ..++++|.+++.  ...++.+.|.++ | +.+..+.+         .-..++|+|+ +
T Consensus       322 ~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~--~~~~v~~~L~~~~g-I~v~~g~~c~~~~~~~~g~~~~iRiS~-~  397 (424)
T PLN02855        322 YEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI--HPTDLSTFLDQQHG-VAIRSGHHCAQPLHRYLGVNASARASL-Y  397 (424)
T ss_pred             HHHHhcCCCEEEeCCCcccccCcccEEEEEECCc--CHHHHHHHhcccCC-EEEechhhhhHHHHHHhCCCCeEEEEe-c
Confidence            9999999999998642      347888988642  256788888887 6 44442221         1135799976 7


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~  351 (367)
                      ++||++||++++++|+++++.+
T Consensus       398 ~ynt~~di~~l~~~l~~~~~~~  419 (424)
T PLN02855        398 FYNTKEEVDAFIHALKDTIAFF  419 (424)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999998764

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.95  E-value=2.8e-25  Score=214.03  Aligned_cols=263  Identities=14%  Similarity=0.160  Sum_probs=190.0

Q ss_pred             ceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|+++..+|+++....   +..|++++.+++++++.+|+++|++++++.+      .++++++++|++|.+.|+++|.
T Consensus        90 ~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t------~lv~~~~~~n~tG~~~~~~~I~  163 (382)
T TIGR03403        90 KNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKT------ALVSVMWANNETGMIFPIKEIG  163 (382)
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccCC------eEEEEEcccCCCccccCHHHHH
Confidence            346888889999987664   3479999999998889999999999997655      4888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|+++|+++++|++|+.+..+.+..   ..   .+|++++++||| ++|+|+|+++++++..+      .+ .+.....
T Consensus       164 ~la~~~g~~~ivD~a~~~g~~~~~~~---~~---~~D~~~~s~~K~-~gp~G~g~l~vr~~~~~------~p-~~~g~~~  229 (382)
T TIGR03403       164 EICKERGVLFHTDAVQAIGKIPVDVQ---KA---GVDFLSFSAHKF-HGPKGVGGLYIRKGVEL------TP-LFHGGEH  229 (382)
T ss_pred             HHHHHcCCEEEEechhhcCCCccCcc---cc---CCCEEEEcchhh-CCCCceEEEEECCCCCC------CC-cccCCCC
Confidence            99999999999999998766544321   11   359999999998 56999999999765321      11 1111110


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           ..                     ..++|+       .   .....+++..+++.. .++++...++..++++++.
T Consensus       230 -----~~---------------------~~~~gt-------~---~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~  272 (382)
T TIGR03403       230 -----MG---------------------GRRSGT-------L---NVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLE  272 (382)
T ss_pred             -----CC---------------------CcccCC-------c---ChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence                 00                     000111       0   001123555666544 3457888899999999999


Q ss_pred             HHhcCCCCeEEeCCC--C-ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------------C-----CeeEE
Q psy3048         267 DLVEKDDRFELVCPP--S-MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------------Q-----GRPFL  323 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~--~-~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------------~-----~~~~l  323 (367)
                      +.|++++|+++..++  . .++++|.+++  ....++...|.++|+ .+..+..               .     ....+
T Consensus       273 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gI-~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i  349 (382)
T TIGR03403       273 DALLELPDVFVVGDREHRVPNTILISIKG--VEGEAMLWDLNKAGI-AASTGSACASEDLEANPVMVAIGADKELAHTAI  349 (382)
T ss_pred             HHHhcCCCEEEECCCCCCcCCEEEEEeCC--CCHHHHHHhhccCCE-EEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence            999999999998753  2 3567777754  235677778887774 4432110               0     12579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      |+|+ +++||++|||+++++|++++++++.
T Consensus       350 R~s~-~~~~t~~did~~~~~l~~~~~~~~~  378 (382)
T TIGR03403       350 RLSL-SRFTTEEEIDYTIEVFKKAVQRLRA  378 (382)
T ss_pred             EEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9975 7899999999999999999887653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.95  E-value=1.3e-25  Score=217.83  Aligned_cols=279  Identities=13%  Similarity=0.102  Sum_probs=195.9

Q ss_pred             CceEEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|++++.+|.+..    ..++..|++++.+++++++.+|+++|++++.+++      .+|++++++|++|.+.|+++
T Consensus       107 ~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~------~lv~~~~~~~~tG~~~~~~~  180 (403)
T TIGR01979       107 AGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT------KLVAITHVSNVLGTVNPVEE  180 (403)
T ss_pred             CCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC------eEEEEEcccccccccCCHHH
Confidence            3457888899998853    4566789999999998889999999999997655      58899999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |.++||+||+++++|++|+.+..+.+.     ... .+|++++++||++ +|.|+|++++++. .+...    .++....
T Consensus       181 i~~~~~~~~~~~ivD~a~~~g~~~~~~-----~~~-~~d~~~~s~~K~~-gp~G~g~l~~~~~-~~~~~----~~~~~g~  248 (403)
T TIGR01979       181 IAKLAHQVGAKVLVDGAQAVPHMPVDV-----QAL-DCDFYVFSGHKMY-GPTGIGVLYGKEE-LLEQM----PPFLGGG  248 (403)
T ss_pred             HHHHHHHcCCEEEEEchhhcCccccCc-----ccc-CCCEEEEeccccc-CCCCceEEEEchH-HHhcC----CCeecCC
Confidence            999999999999999999877654321     111 3599999999976 6999999998643 23221    1122111


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ...   ....+   .  ...+..+.              ..+..........+++.++++.+...|++++.++..+++++
T Consensus       249 ~~~---~~~~~---~--~~~~~~~~--------------~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~  306 (403)
T TIGR01979       249 EMI---AEVSF---E--ETTYNEAP--------------HKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY  306 (403)
T ss_pred             Cce---eeccc---C--ccccCCCh--------------hhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            000   00000   0  00000000              01111011112346667777777677889999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE---------ECCeeEEEEEecCCC
Q psy3048         265 FADLVEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS---------FQGRPFLRFVVTSPE  331 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------~~~~~~lRi~~~~~~  331 (367)
                      +.+.|++++|++++.++    ..++++|.+++.  ...++.+.|.++|+ .+..+.         ....+++|+|+ +++
T Consensus       307 l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~L~~~gI-~v~~g~~~~~~~~~~~~~~~~iRiS~-~~~  382 (403)
T TIGR01979       307 ALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV--HPHDVGTILDEEGI-AVRSGHHCAQPLMRRFGVPATCRASF-YIY  382 (403)
T ss_pred             HHHHHhcCCCEEEeCCCCccccCceEEEEeCCc--CHHHHHHHHhhCCE-EEcchhhhhHHHHHHhCCCCEEEEEe-ccC
Confidence            99999999999998653    367888887642  24578888887874 443221         11246899976 688


Q ss_pred             CCHHHHHHHHHHHHHHHHHh
Q psy3048         332 TNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~  351 (367)
                      ++++|+++++++|+++++.+
T Consensus       383 ~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       383 NTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988764

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.95  E-value=1.4e-25  Score=215.91  Aligned_cols=262  Identities=15%  Similarity=0.136  Sum_probs=189.5

Q ss_pred             ceEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-+|+++..+|+++.....   ..|++++.++.++++.+|+++|++++++++      .++++++++|++|.+.|+++|.
T Consensus        86 ~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~------~lv~i~~~~n~tG~~~~~~~I~  159 (379)
T TIGR03402        86 KRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDT------ALVSVMWANNETGTIFPIEEIG  159 (379)
T ss_pred             CCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCc------EEEEEEcccCCeeecccHHHHH
Confidence            4578888999999765543   369999999988788999999999997655      4888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||++|+++++|++|+.+..+.+..     . ..+|++++++|| +++|.|+|++++++...+      .+ ++..+..
T Consensus       160 ~l~~~~g~~vivD~~~~~g~~~~~~~-----~-~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~------~p-~~~g~~~  225 (379)
T TIGR03402       160 EIAKERGALFHTDAVQAVGKIPIDLK-----E-MNIDMLSLSGHK-LHGPKGVGALYIRKGTRF------RP-LLRGGHQ  225 (379)
T ss_pred             HHHHHcCCEEEEECcccccccccCcc-----c-CCCCEEEEcHHH-cCCCCceEEEEECCCCCC------CC-cccCCcc
Confidence            99999999999999998876544321     1 145999999999 678999999999754211      11 1111100


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           .                     ...+.|+          ......+++.++++.. .++++++.++..++.+++.
T Consensus       226 -----~---------------------~~~~~gt----------~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~  268 (379)
T TIGR03402       226 -----E---------------------RGRRAGT----------ENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLE  268 (379)
T ss_pred             -----C---------------------CCcCCCC----------ccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence                 0                     0000111          0001224455556554 4567888899999999999


Q ss_pred             HHhcC-CCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--------------------CCeeE
Q psy3048         267 DLVEK-DDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--------------------QGRPF  322 (367)
Q Consensus       267 ~~L~~-~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------------~~~~~  322 (367)
                      +.|++ ++++++..++.   .++++|.+...+  ..++...|.++|+ .+..+..                    ...+.
T Consensus       269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gI-~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~  345 (379)
T TIGR03402       269 AGLLARIPDARLNGDPTKRLPNTVNISFEYIE--GEAILLLLDMEGI-CASSGSACTSGSLEPSHVLRAMGVPHTAAHGS  345 (379)
T ss_pred             HHHHhhCCCEEEeCCCccCCCCEEEEEecCCC--HHHHHHhhccCCE-EEEchhhcCCCCCCcCHHHHHcCCChhhcCce
Confidence            99986 89999876532   357777765422  5688888877774 4432211                    01358


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +|+|+ +.+||++|||++++.|+++++++.
T Consensus       346 vR~S~-~~~~t~~di~~~~~~l~~~~~~~~  374 (379)
T TIGR03402       346 IRFSL-SRYNTEEDIDYVLEVLPPIIARLR  374 (379)
T ss_pred             EEEEc-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99976 789999999999999999988754

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=1.7e-25  Score=229.46  Aligned_cols=294  Identities=14%  Similarity=0.088  Sum_probs=208.0

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      ++|+++|.|...+           +..+|.+|++|.+.|.+....+...|++++.|+++++|.+|+++|++++++.   +
T Consensus       561 agL~aiR~y~~~r-----------ge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~---~  626 (939)
T TIGR00461       561 AGLRVIRSYHESR-----------GENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH---G  626 (939)
T ss_pred             HHHHHHHHHHHhc-----------CCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc---C
Confidence            5788999877433           1134788999999999998889999999999999889999999999999752   2


Q ss_pred             CccEEEEEecCCCcccccCC-hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-----c
Q psy3048          82 LIPCCLVATLGTTGTCAFDN-LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-----T  155 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~d-l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-----~  155 (367)
                      ..+.+|++++++| +|.++| +++|+++||++|.+++||+|+.........     .+.-.+|++++|.||+|+     +
T Consensus       627 ~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~-----Pg~~GaDi~~~s~HKtf~~P~G~G  700 (939)
T TIGR00461       627 DELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS-----PGDLGADVCHLNLHKTFCIPHGGG  700 (939)
T ss_pred             CceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC-----ccccCCCEEEecCCccCCCCCCCC
Confidence            2356899999988 799977 999999999999999999999653332211     122246999999999999     5


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccc-cccc
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPL-SRRF  234 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  234 (367)
                      |+|+|++.+++.  +.       +|+.....   ..+.+.                 ....    +.++.....+ +...
T Consensus       701 GPg~G~i~vr~~--L~-------~~lPg~~v---~~t~d~-----------------~gre----q~Iga~s~~~~g~a~  747 (939)
T TIGR00461       701 GPGMGPIGVKSH--LI-------PFLPKHDV---VSMITG-----------------IGGS----KSIGSVSAAPYGSAS  747 (939)
T ss_pred             CCCeEEEEEhhh--ch-------hhcCCCcc---cccccC-----------------CCCc----cccccccccccCcHH
Confidence            556699999742  32       12211110   000000                 0000    0000000001 1112


Q ss_pred             cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC----CCceeEEEEEcCC----chHHHHHHHHHhc
Q psy3048         235 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCFRLKGD----NDLTNQLYERLMS  306 (367)
Q Consensus       235 ~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~----~~~~~~l~~~L~~  306 (367)
                      .++..|++++.+|.+|+.+..+....+++|+.++|++  +++++.+    +.++.++|++++.    +..+.++.++|.+
T Consensus       748 ~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d  825 (939)
T TIGR00461       748 ILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQD  825 (939)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHh
Confidence            3488999999999999999999999999999999987  5576654    3567788887631    2346789999999


Q ss_pred             cCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         307 HKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       307 ~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      .|......+ ...+...+|.+   -.++++|||+|++++.++.+++..
T Consensus       826 ~G~hapt~~~pv~g~lmiepT---E~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       826 YGFHAPTLSFPVPGTLMVEPT---ESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             CCeeccccCCccCCeEEEEee---ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            996543322 12344456653   366899999999999999888765

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.95  E-value=1.5e-25  Score=233.58  Aligned_cols=292  Identities=17%  Similarity=0.132  Sum_probs=202.1

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      ++|+++|.+...+           +..++.+|++++..|.|...++...|++++.|+++.+|.+|+++|++++++..   
T Consensus       573 agL~a~r~~~~~~-----------G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~---  638 (954)
T PRK05367        573 AGLLAIRAYHESR-----------GEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEHA---  638 (954)
T ss_pred             HHHHHHHHHhhcc-----------CCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhccC---
Confidence            5677777765432           11246789999999999999999999999999998889999999999997642   


Q ss_pred             CccEEEEEecCCCccccc-CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc-
Q psy3048          82 LIPCCLVATLGTTGTCAF-DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC-  159 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i-~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-  159 (367)
                      ..+.+|+++++++. |.+ +|+++|+++||++|+++|||+||..+.+....     .+.-.+|++++++||||+.|.|. 
T Consensus       639 ~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~-----pg~~GADi~~~s~HK~f~~P~G~G  712 (954)
T PRK05367        639 DNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLAR-----PGDIGADVSHLNLHKTFCIPHGGG  712 (954)
T ss_pred             CCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCC-----hhhcCCCEEEecCcccCCCCcCCC
Confidence            12567889998775 665 79999999999999999999999755443221     11124699999999999877664 


Q ss_pred             ----eeEEEecchhhhhhccCCccccccCCCCCC--CCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc
Q psy3048         160 ----SAMWVKNANHLTNTFFTDRVYLKHTDAPMN--TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR  233 (367)
Q Consensus       160 ----g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (367)
                          |++++++  .+.       +|+........  .....+                     ...    ..++    ..
T Consensus       713 GPg~G~l~vr~--~l~-------p~lpg~~v~~~~~~~~~g~---------------------v~t----a~~g----~a  754 (954)
T PRK05367        713 GPGVGPIGVKA--HLA-------PFLPGHPVQIAGGETGIGA---------------------VSA----APFG----SA  754 (954)
T ss_pred             CCceEEEeecc--ccc-------ccCCCCccCcCCCCCCcCc---------------------chh----HHHH----HH
Confidence                4888863  222       22222111000  000000                     000    0010    01


Q ss_pred             ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCC----chHHHHHHHHHhcc
Q psy3048         234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGD----NDLTNQLYERLMSH  307 (367)
Q Consensus       234 ~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~----~~~~~~l~~~L~~~  307 (367)
                      ..+...|+.++.+|.+|+++..++...+++|+.++|++..++....+  +..+...|++...    +..+.++.++|.+.
T Consensus       755 l~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~  834 (954)
T PRK05367        755 SILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDY  834 (954)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHC
Confidence            13355788899999999999999999999999999987533222222  3355556655321    12357899999999


Q ss_pred             CcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         308 KQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       308 g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      |..... ..+...+.++|++ +.+++++|+|+|+++++.+.+++..
T Consensus       835 G~~~~t-~~~pv~~~l~i~p-tE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        835 GFHAPT-MSFPVAGTLMVEP-TESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             CCeEee-cCCccCCEEEEEe-eecCCHHHHHHHHHHHHHHHHHHHH
Confidence            865433 2233456789976 5688999999999999999888765

>TIGR01814 kynureninase kynureninase

Probab=99.94  E-value=3.1e-25  Score=215.35  Aligned_cols=277  Identities=12%  Similarity=0.090  Sum_probs=188.7

Q ss_pred             ceEEEecCCcchhHHH----HHHhCCcce----EEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC
Q psy3048          30 RLVAYASDQSNSSVEK----SAIIGDVPV----RQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN  101 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~----~~~~~g~~v----~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d  101 (367)
                      +.+|++++.+|.+...    .++..|+++    +.++.++++.++++++++.++..+.   ...+|+++++++.+|.+.|
T Consensus       113 ~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~---~t~lv~~~~v~~~tG~~~~  189 (406)
T TIGR01814       113 RYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGD---DIAVILLSGVQYYTGQLFD  189 (406)
T ss_pred             ccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCC---CeEEEEEeccccccceecC
Confidence            4478889999998544    345568887    5666666788999999998864221   1358999999999999999


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      +++|+++||++|++++||++|+.+.++.+...   .   .+|++++++||||++|+| |++++..+.. ........++.
T Consensus       190 ~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~---~---gvD~~~~s~hK~l~g~pG-~~l~v~~~~~-~~~~p~~~g~~  261 (406)
T TIGR01814       190 MAAITRAAHAKGALVGFDLAHAVGNVPLDLHD---W---GVDFACWCTYKYLNAGPG-AGAFVHEKHA-HTERPRLAGWW  261 (406)
T ss_pred             HHHHHHHHHHcCCEEEEEcccccCCccccccc---C---CCCEEEEcCccccCCCCC-eEEEEehhhh-hhcCCCCCccc
Confidence            99999999999999999999999877654211   1   459999999999988888 7777755432 11111111111


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      .....      ..+..           ...+  ...+     ..+.....+.....++.++++.+...|++++.++..++
T Consensus       262 ~~~~~------~~~~~-----------~~~~--~~~~-----~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l  317 (406)
T TIGR01814       262 GHARP------TRFKM-----------DNTL--GLIP-----CGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLL  317 (406)
T ss_pred             CCCCc------ccccc-----------cccc--CCCc-----cceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            11000      00000           0000  0000     00111111112335666788888788999999999999


Q ss_pred             HHHHHHHhcCC----CCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCC
Q psy3048         262 AKKFADLVEKD----DRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       262 a~~l~~~L~~~----~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~  333 (367)
                      ++++++.|+++    +|++++.+.    ..++++|.++ .  ...++.+.|.++|+ ++.   ..+...+|+|+++.+||
T Consensus       318 ~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~--~~~~~~~~L~~~gi-~v~---~~~~~~iRiS~~~~~nt  390 (406)
T TIGR01814       318 TDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V--PGKAVFQALIKRGV-IGD---KREPSVIRVAPVPLYNT  390 (406)
T ss_pred             HHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C--CHHHHHHHHHHCCE-EEe---ccCCCeEEEechhccCC
Confidence            99999999875    468888752    3467888876 1  25678888988884 332   23345899976568999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQS  348 (367)
Q Consensus       334 ~edid~li~~l~~~~  348 (367)
                      ++|||+++++|++++
T Consensus       391 ~~did~l~~~l~~~~  405 (406)
T TIGR01814       391 FVDVYDAVNVLEEIL  405 (406)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998864

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.94  E-value=1.8e-25  Score=214.49  Aligned_cols=269  Identities=17%  Similarity=0.140  Sum_probs=190.6

Q ss_pred             cCceEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          28 KSRLVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .++-.|+++..+|++...+    ++..|++++.++.+.++.+|+++++++++++++      +|++++.+|.+|.+.|++
T Consensus        86 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~------lv~~~~~~~~tG~~~pi~  159 (371)
T PF00266_consen   86 KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTR------LVSISHVENSTGVRNPIE  159 (371)
T ss_dssp             TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTES------EEEEESBETTTTBBSSHH
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccc------eEEeecccccccEEeeec
Confidence            3455777888999998743    345799999999988899999999999987764      999999999999999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|+++||++|+++++|++|+.+..+.+.-     .. .+|++++++|| |++|+|+|+++++++. ..+..+...+   .
T Consensus       160 ~I~~~~~~~~~~~~vD~~~~~g~~~id~~-----~~-~~D~~~~s~~K-l~gp~G~g~l~v~~~~-~~~~~p~~~~---~  228 (371)
T PF00266_consen  160 EIAKLAHEYGALLVVDAAQSAGCVPIDLD-----EL-GADFLVFSSHK-LGGPPGLGFLYVRPEA-IERLRPAKPG---G  228 (371)
T ss_dssp             HHHHHHHHTTSEEEEE-TTTTTTSS--TT-----TT-TESEEEEESTS-TTSSSTEEEEEEEHHH-HHHHHTSSSS---S
T ss_pred             eehhhhhccCCceeEechhcccccccccc-----cc-ccceeeecccc-cCCCCchhhheehhhh-hhcccccccc---c
Confidence            99999999999999999999888765421     11 46999999999 9999999999998743 3332111111   1


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ...      .......+.  ....+               ..+......-...+++..+++.+...|++++.++..++++
T Consensus       229 ~~~------~~~~~~~~~--~~~~~---------------~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~  285 (371)
T PF00266_consen  229 GYL------DFPSLQEYG--LADDA---------------RRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAE  285 (371)
T ss_dssp             STT------THHHHHHHC--HHSTT---------------TGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc------ccccchhcc--ccccc---------------ccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHH
Confidence            000      000000000  00001               0011001111233667778888888899999999999999


Q ss_pred             HHHHHhcCCCCeEEeCC----CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECC---------eeEEEEEecCC
Q psy3048         264 KFADLVEKDDRFELVCP----PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQG---------RPFLRFVVTSP  330 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---------~~~lRi~~~~~  330 (367)
                      ++.+.|++++++.++.+    ...++++|.+++.  ..+++.+.|.++| +.+..+....         .+++|+|+ ++
T Consensus       286 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~L~~~~-I~~~~G~~~~~~~~~~~~~~~~iRvS~-~~  361 (371)
T PF00266_consen  286 YLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS--DADDVVKYLEERG-IAVSTGSACAGPSLDILGMGGVIRVSL-HY  361 (371)
T ss_dssp             HHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS--SHHHHHHHHHHHT-EEEEESTTTCHHHHHHHHTTTEEEEE--GT
T ss_pred             HHHhhhhcCCceeEeeecccccccceEEEeecCC--CHHHHHHHHhhcC-EEEeccCcccHHHHHHhCCCCEEEEec-cC
Confidence            99999999999998763    2567889988653  3578899999887 4444322111         26999975 79


Q ss_pred             CCCHHHHHHH
Q psy3048         331 ETNQCDVAFA  340 (367)
Q Consensus       331 ~~~~edid~l  340 (367)
                      +||++|||+|
T Consensus       362 ~nt~~dv~~l  371 (371)
T PF00266_consen  362 YNTEEDVDRL  371 (371)
T ss_dssp             TSSHHHHHHH
T ss_pred             CCCHHHHhhC
Confidence            9999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02651 cysteine desulfurase

Probab=99.94  E-value=4.3e-25  Score=211.32  Aligned_cols=248  Identities=16%  Similarity=0.151  Sum_probs=179.7

Q ss_pred             ceEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|++++.+|.++.....   ..|++++.++.++++.+|+++|++++++++      .++++++++|++|.+.|+++|+
T Consensus        88 g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t------~lv~v~~~~n~tG~~~~l~~I~  161 (364)
T PLN02651         88 KKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDT------ALVSVMAVNNEIGVIQPVEEIG  161 (364)
T ss_pred             CCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCc------EEEEEECCCCCceecccHHHHH
Confidence            4578889999999766543   468999999988889999999999997765      4889999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||++|++++||++|+.+.++.+...   .   .+|++++++||| ++|+|+|+++++++. ..+   ..+.+.... .
T Consensus       162 ~~~~~~g~~~~vD~a~~~g~~~~~~~~---~---~~D~~~~s~hK~-~gp~G~g~l~v~~~~-~~~---l~p~~~g~~-~  229 (364)
T PLN02651        162 ELCREKKVLFHTDAAQAVGKIPVDVDD---L---GVDLMSISGHKI-YGPKGVGALYVRRRP-RVR---LEPLMSGGG-Q  229 (364)
T ss_pred             HHHHHcCCEEEEEcchhhCCcccCccc---C---CCCEEEechhhh-CCCCceEEEEEcCCC-CCC---CCccccCCC-c
Confidence            999999999999999998876554211   2   359999999998 689999999998643 211   111111111 0


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           ..                     ...+|+.          +....+++.++++.+.. +.+++.++..++++++.
T Consensus       230 -----~~---------------------~~~~GT~----------~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~  272 (364)
T PLN02651        230 -----ER---------------------GRRSGTE----------NTPLVVGLGAACELAMK-EMDYDEKHMKALRERLL  272 (364)
T ss_pred             -----cC---------------------CccCCCc----------cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence                 00                     0011110          11224667777777654 45888999999999999


Q ss_pred             HHhcC-CCCeEEeCC--CC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--------------------CCe
Q psy3048         267 DLVEK-DDRFELVCP--PS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--------------------QGR  320 (367)
Q Consensus       267 ~~L~~-~~g~~~~~~--~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------------~~~  320 (367)
                      +.|++ ++|++++.+  +.   .++++|.+++.  ...++.++|.+   +.+..+..                    ...
T Consensus       273 ~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~L~~---i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~  347 (364)
T PLN02651        273 NGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV--EGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVPEEMAH  347 (364)
T ss_pred             HHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC--CHHHHHHHhCC---EEEEchhhcCCCCCCcCHHHHHcCCChHHhC
Confidence            99985 689999875  22   45888888642  35678888854   44432211                    013


Q ss_pred             eEEEEEecCCCCCHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid  338 (367)
                      +.+|+|+ +++||++|||
T Consensus       348 ~~vR~S~-~~~~t~~did  364 (364)
T PLN02651        348 GSLRLGV-GRFTTEEEVD  364 (364)
T ss_pred             ceEEEEc-CCCCCHHHcC
Confidence            6899976 7899999985

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.94  E-value=6.4e-25  Score=216.67  Aligned_cols=292  Identities=18%  Similarity=0.127  Sum_probs=196.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~dl~~I~~l  108 (367)
                      +..|++++..|.+....+...|++++.++++.++.+|+++|++++++++      .+|++++++ ++|.+ +|+++|+++
T Consensus       161 ~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t------~~V~v~~Pn-~tG~~~~dl~eI~~~  233 (481)
T PRK04366        161 RTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGEDT------AALMLTNPN-TLGLFERNILEIAEI  233 (481)
T ss_pred             CCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcccCC------eEEEEeCCC-CccccchHHHHHHHH
Confidence            4578888999999999999999999999998789999999999997766      367778876 79988 599999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-----ceeEEEecchhhhhhccCCcccccc
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-----CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-----~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ||++|++++||+|+..+.+..  ...   +--.+|++++++||||++|.|     +|++++++. .... +.  +..+..
T Consensus       234 a~~~gal~iVD~a~~~~~~g~--~~~---~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~-~~~~-lp--~~~v~~  304 (481)
T PRK04366        234 VHEAGGLLYYDGANLNAILGK--ARP---GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEE-LAPF-LP--VPVVEK  304 (481)
T ss_pred             HHHcCCEEEEEecChhhhccc--CCc---cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhh-hHhh-CC--CCeeec
Confidence            999999999999997543311  111   112469999999999997755     457777643 2222 11  111111


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .     ..  .|.+.             +.   ++  +.++......+....+++.|..+..+|.+|++++.++...+++
T Consensus       305 ~-----g~--~~~l~-------------~~---r~--~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~  359 (481)
T PRK04366        305 D-----GD--RYRLD-------------YD---RP--KSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNAN  359 (481)
T ss_pred             c-----CC--ceeec-------------cc---cc--ccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0     00  11000             00   00  0000000000111334677888899999999999999999999


Q ss_pred             HHHHHhcCCCCeEEeC-CCCceeEEEEEcC---CchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELVC-PPSMGLVCFRLKG---DNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~---~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid  338 (367)
                      |++++|+++  +++.. .+.++.+.|....   .+....++.++|.++|+....... ......+|+++ +.++|++|||
T Consensus       360 ~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~-~e~~t~edid  436 (481)
T PRK04366        360 YLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEP-TETESKETLD  436 (481)
T ss_pred             HHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcc-cCCCCHHHHH
Confidence            999999987  33332 2344455554321   112467899999999954221111 01245899976 5788999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCcccccC
Q psy3048         339 FAWNEISHQSSEMNLPRGSSSVAKRNS  365 (367)
Q Consensus       339 ~li~~l~~~~~~~~~~~~~~~~~~~~~  365 (367)
                      +++++|+++.+++..+...-..|+|+.
T Consensus       437 ~l~~~l~~i~~~~~~~~~~~~~~p~~~  463 (481)
T PRK04366        437 AFIAAMKQIAEEAKENPELVKEAPHNT  463 (481)
T ss_pred             HHHHHHHHHHHHHHhCcHhHhhCCCCC
Confidence            999999999998877655445555554

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.93  E-value=1.7e-24  Score=207.83  Aligned_cols=272  Identities=15%  Similarity=0.117  Sum_probs=189.7

Q ss_pred             CceEEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|++++.+|++..    ..++..|++++.|+.++++.+|+++|++++.+.+      .+|++++++|++|.+.|+++
T Consensus        87 ~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~~~tG~~~~~~~  160 (373)
T cd06453          87 PGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT------KLVAVTHVSNVLGTINPVKE  160 (373)
T ss_pred             CCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc------eEEEEeCcccccCCcCCHHH
Confidence            3456778889999853    3455789999999998889999999999997644      58889999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |.++|+++|+++++|++|+.+..+.+.   ...   .+|++++++|||++. +|+|+++.++ ..+...    .++....
T Consensus       161 i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~---~~d~~~~s~~K~~~~-~g~g~~~~~~-~~~~~~----~~~~~g~  228 (373)
T cd06453         161 IGEIAHEAGVPVLVDGAQSAGHMPVDV---QDL---GCDFLAFSGHKMLGP-TGIGVLYGKE-ELLEEM----PPYGGGG  228 (373)
T ss_pred             HHHHHHHcCCEEEEEhhhhcCceeeec---ccc---CCCEEEeccccccCC-CCcEEEEEch-HHhhcC----CCeecCC
Confidence            999999999999999999866553221   111   359999999999887 7899888854 333221    1111111


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ...   ....+....|    ...+               ..+.....+....++++.+++.+..+|++++.++..+++++
T Consensus       229 ~~~---~~~~~~~~~~----~~~~---------------~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~  286 (373)
T cd06453         229 EMI---EEVSFEETTY----ADLP---------------HKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAY  286 (373)
T ss_pred             Ccc---cccccccccc----CCCc---------------cccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            000   0000000000    0000               11111111122356778888888888999999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC--CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCC
Q psy3048         265 FADLVEKDDRFELVCPP--SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETN  333 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~  333 (367)
                      +.+.|+++++++++.++  ..++++|.+++  ....++.++|.++|+. +.++..         ....++|+++ ++++|
T Consensus       287 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l~~~gi~-i~~g~~~~~~~~~~~~~~~~iRis~-~~~~t  362 (373)
T cd06453         287 ALERLSEIPGVRVYGDAEDRAGVVSFNLEG--IHPHDVATILDQYGIA-VRAGHHCAQPLMRRLGVPGTVRASF-GLYNT  362 (373)
T ss_pred             HHHHHhcCCCeEEeCCccccCCeEEEEECC--cCHHHHHHHHHHCCEE-eccCccchhHHHHHhCCCCeEEEEe-cCCCC
Confidence            99999999999987542  45677887754  2356888999888853 432221         1246899976 68899


Q ss_pred             HHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEI  344 (367)
Q Consensus       334 ~edid~li~~l  344 (367)
                      ++|+|+++++|
T Consensus       363 ~~di~~~~~~l  373 (373)
T cd06453         363 EEEIDALVEAL  373 (373)
T ss_pred             HHHHHHHHhhC
Confidence            99999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.93  E-value=3.4e-24  Score=207.76  Aligned_cols=263  Identities=15%  Similarity=0.204  Sum_probs=181.6

Q ss_pred             CceEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          29 SRLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      ++-.|+++..+|.++..++.   ..|++++.|++++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus        91 ~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~------~lv~v~~~~n~tG~~~~~~~I  164 (402)
T TIGR02006        91 KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDT------ILVSIMHVNNEIGVIQDIAAI  164 (402)
T ss_pred             CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCC------EEEEEECCCcCceecccHHHH
Confidence            34578888999999877654   359999999998889999999999987654      588999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      .++||++|++++||++|+.+..+.+..     . ..+|++++++||++ +|+|+|+++++++....    ..+ ....+.
T Consensus       165 ~~l~~~~g~~livD~a~a~g~~~~~~~-----~-~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~----~~~-~~~g~~  232 (402)
T TIGR02006       165 GEICRERKVFFHVDAAQSVGKIPINVN-----E-LKVDLMSISGHKIY-GPKGIGALYVRRKPRVR----LEA-LIHGGG  232 (402)
T ss_pred             HHHHHHcCCEEEEEcchhcCCcccCcc-----c-cCCCEEEEehhhhc-CCCceEEEEEccCCCCC----CCc-eecCCC
Confidence            999999999999999998876654321     1 14599999999965 69999999998643221    011 111110


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .     ...+                     .+|+          ......+++..+++.+ .++++++.++..++++++
T Consensus       233 ~-----~~~~---------------------~~gt----------~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l  275 (402)
T TIGR02006       233 H-----ERGM---------------------RSGT----------LPTHQIVGMGEAFRIA-KEEMAQDTAHVLALRDRL  275 (402)
T ss_pred             c-----cCCc---------------------cCCC----------ccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence            0     0000                     0011          0111234555666654 357888889999999999


Q ss_pred             HHHhcCCCCeEEeCCC--Cc-e--eEEEEEcCCchHHHHHHHHHhc----cCcEEEEEeEE--------------CCeeE
Q psy3048         266 ADLVEKDDRFELVCPP--SM-G--LVCFRLKGDNDLTNQLYERLMS----HKQIYIIKASF--------------QGRPF  322 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~--~~-~--~v~f~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~--------------~~~~~  322 (367)
                      .+.|++++++.+..++  .. +  .++|...  .  .+++...|..    .|.. +.+...              ...++
T Consensus       276 ~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~--~--~~~~~~~l~~i~v~~G~~-c~~~~~~~~~~l~~lg~~~~~~~~~  350 (402)
T TIGR02006       276 LNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV--E--GESLIMALKDLAVSSGSA-CTSASLEPSYVLRALGINDELAHSS  350 (402)
T ss_pred             HHHHhcCCCEEEeCCccccCCCeEEEEEeCc--C--HHHHHHhcCCEEEechhh-cCCCCCCccHHHHHcCCChhhcCce
Confidence            9999999999887532  22 2  3455421  1  3345544421    1111 111100              11368


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +|+|+ +++||++|||+++++|+++.++++
T Consensus       351 vR~S~-~~~~t~edid~l~~~l~~~~~~~~  379 (402)
T TIGR02006       351 IRFTI-GRFTTEEEIDYAVKLVKSAIDKLR  379 (402)
T ss_pred             EEEEe-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99976 788999999999999999988764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=4.6e-24  Score=206.61  Aligned_cols=281  Identities=14%  Similarity=0.050  Sum_probs=196.8

Q ss_pred             eEEEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      -.|++++..|++.  ...++..|++++.++.+.+..+|+++|++++++.+.  ..+.+|++++++|+||.+.|+++|.++
T Consensus        85 d~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~k~v~~~~~~~~tG~~~~~~~i~~l  162 (401)
T PLN02409         85 DKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKIKAVCVVHNETSTGVTNDLAGVRKL  162 (401)
T ss_pred             CEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCccEEEEEeecccccccCCHHHHHHH
Confidence            3566677889775  566777899999999876667899999999986320  013588999999999999999999999


Q ss_pred             --HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC--CccccccC
Q psy3048         109 --CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT--DRVYLKHT  184 (367)
Q Consensus       109 --~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~--~~~yl~~~  184 (367)
                        ||++|++++||++|+.+..+.+...   .   .+|++++++|||+++|+|+|+++++++ .+++....  .+.|+...
T Consensus       163 ~~~~~~g~~~vvD~v~s~g~~~id~~~---~---~~D~~~~s~~K~l~~P~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~  235 (401)
T PLN02409        163 LDCAQHPALLLVDGVSSIGALDFRMDE---W---GVDVALTGSQKALSLPTGLGIVCASPK-ALEASKTAKSPRVFFDWA  235 (401)
T ss_pred             HhhhccCcEEEEEcccccCCccccccc---c---CccEEEEcCccccCcCCCcceeEECHH-HHHHHhcCCCCCeecCHH
Confidence              9999999999999987665443211   1   359999999999999999999998644 33332111  11111100


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      .              +..        +.+.+..      ..++   .+....+++..+++.+...|++++.+++.+++++
T Consensus       236 ~--------------~~~--------~~~~g~~------~~~T---p~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~  284 (401)
T PLN02409        236 D--------------YLK--------FYKLGTY------WPYT---PSIQLLYGLRAALDLIFEEGLENVIARHARLGEA  284 (401)
T ss_pred             H--------------HHH--------HHhcCCC------CCCC---ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            0              000        0000000      0011   1111235677788888888999999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC---Cc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPP---SM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~---~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~  339 (367)
                      +++.|+++ |++++.++   .+ .+++|+++. .....++.+.|.++..+.+.++... ....+||+ ++++++.+|+.+
T Consensus       285 l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~-~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig-~~g~~~~~~~~~  361 (401)
T PLN02409        285 TRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPE-GIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIG-HLGNVNELQLLG  361 (401)
T ss_pred             HHHHHHHc-CCeeccCChhhcccceEEEeCCC-CCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEc-CCCCCCHHHHHH
Confidence            99999887 89987642   24 445676653 2234678877776655666655433 34689995 567999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q psy3048         340 AWNEISHQSSEMNLP  354 (367)
Q Consensus       340 li~~l~~~~~~~~~~  354 (367)
                      ++++|++++.++...
T Consensus       362 ~~~~~~~~l~~~g~~  376 (401)
T PLN02409        362 ALAGVEMVLKDVGYP  376 (401)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999998876533

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.93  E-value=4.2e-24  Score=206.84  Aligned_cols=258  Identities=14%  Similarity=0.067  Sum_probs=179.7

Q ss_pred             ceEEEecCCcchhHH----HHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVE----KSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .-.|++++.+|++..    ..++..|++++.+++++ ++.+|+++|++++++.+      .+|++++++|++|.+.|+++
T Consensus       104 gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~------~lv~i~~~~n~tG~~~~~~~  177 (397)
T TIGR01976       104 GDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRT------RLVAVTAASNTLGSIVDLAA  177 (397)
T ss_pred             CCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCc------eEEEEeCCCCCCCccCCHHH
Confidence            446778888998864    44567899999999875 68999999999997655      48999999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |+++||+||+++++|++|+.+..+.+..+   .   .+|++++++|||++ | ++|+++++++ .+.........+....
T Consensus       178 i~~~~~~~~~~~ivD~a~~~~~~~~~~~~---~---~~d~~~~s~~K~~g-~-~~G~l~~~~~-~~~~l~~~~~~~~~~~  248 (397)
T TIGR01976       178 ITELVHAAGALVVVDAVHYAPHGLIDVQA---T---GADFLTCSAYKFFG-P-HMGILWGRPE-LLMNLPPYKLTFSYDT  248 (397)
T ss_pred             HHHHHHHcCCEEEEehhhhccccCCCHHH---c---CCCEEEEechhhcC-C-ceEEEEEcHH-HHhhCCCccccCccCC
Confidence            99999999999999999976544332111   1   35999999999984 4 4888888543 3322211111111110


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHH--------------
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLK--------------  249 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--------------  249 (367)
                      ..                      .. ++.+               ++. ...+++.++++.+...              
T Consensus       249 ~~----------------------~~-~~~g---------------t~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~  290 (397)
T TIGR01976       249 GP----------------------ER-FELG---------------TPQYELLAGVVAAVDYLAGLGESANGSRRERLVA  290 (397)
T ss_pred             Cc----------------------ch-hcCC---------------CCCHHHHHHHHHHHHHHHHhCcccccchhhhhhH
Confidence            00                      00 0111               111 1224455556555333              


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC----CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EE-------
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SF-------  317 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~-------  317 (367)
                      +++++.++..+++++++++|+++++++++.+    +..+++.|.+.+  ....++.++|.++|+. +... ..       
T Consensus       291 ~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~-v~~~~~~~~~~~~~  367 (397)
T TIGR01976       291 SFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHG--LPPQRVVRRLADQGID-AWAGHFYAVRLLRR  367 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCC--cCHHHHHHHHHHCCeE-EEeCccchHHHHHH
Confidence            3677888899999999999999888998764    256788887754  2356899999988854 4322 11       


Q ss_pred             ----CCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         318 ----QGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       318 ----~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                          .+..++|+|+ ++++|++|+++++++|
T Consensus       368 ~~~~~~~~~iRis~-~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       368 LGLNDEGGVVRVGL-AHYNTAEEVDRLLEAL  397 (397)
T ss_pred             hCCCCCCCeEEEEe-eccCCHHHHHHHHHhC
Confidence                1345899976 6789999999999874

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.93  E-value=3.1e-24  Score=222.81  Aligned_cols=285  Identities=15%  Similarity=0.076  Sum_probs=197.7

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|.+|+++.++|.+....+...|++++.|+++++|.+|+++|++++++.+++   ..+|++++++|..|..+|+++|+++
T Consensus       615 ~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~---ta~V~vt~pSn~gg~e~~I~eI~~i  691 (993)
T PLN02414        615 HRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDN---LAALMVTYPSTHGVYEEGIDEICDI  691 (993)
T ss_pred             CCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCC---eEEEEEECCCccccccchHHHHHHH
Confidence            4668999999999999999999999999999889999999999999864321   2589999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-----ceeEEEecchhhhhhccCCcccccc
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-----CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-----~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ||++|+.++||+|+..+......  .   +--.+|++++++||||++|.|     +|+++++..  +...+   |+..-.
T Consensus       692 ah~~Galv~vDgAq~~a~~~l~~--p---~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p~l---Pg~~v~  761 (993)
T PLN02414        692 IHDNGGQVYMDGANMNAQVGLTS--P---GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVV  761 (993)
T ss_pred             HHHcCCEEEEEecCHHhccCcCC--c---cccCCCEEEecCCccCCcCcccCCCCeeeEEEchh--hcccC---CCCccc
Confidence            99999999999999765532211  1   111459999999999997654     899988642  22111   111100


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      . .      ..+ + +          + .  .+.+.+.  .+. ...+....+...|+.++.+|.+|+.+..++...+++
T Consensus       762 ~-~------~~~-~-~----------r-~--~~s~iGt--~~~-a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAn  816 (993)
T PLN02414        762 P-T------GGI-P-R----------P-E--KTQPLGT--ISA-APWGSALILPISYTYIAMMGSEGLTDASKIAILNAN  816 (993)
T ss_pred             c-C------CCc-c-c----------c-c--CCCCcCC--ccc-hhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHH
Confidence            0 0      000 0 0          0 0  0000000  000 000111233566788888999999999999999999


Q ss_pred             HHHHHhcCCCCeEEeCC--CCceeEEEEEcCC----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         264 KFADLVEKDDRFELVCP--PSMGLVCFRLKGD----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      |++++|++..++....+  +.++...+.+...    .....++.++|.+.|..... ..+...+.+|+++ +.+++++|+
T Consensus       817 Yl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt-~~~pv~~~lmiep-TE~~skeel  894 (993)
T PLN02414        817 YMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT-MSWPVPGTLMIEP-TESESKAEL  894 (993)
T ss_pred             HHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEee-eccccCCEEEEEe-eeeCCHHHH
Confidence            99999987544443333  3445555554421    12347899999988854333 2244567899976 578899999


Q ss_pred             HHHHHHHHHHHHHhhC
Q psy3048         338 AFAWNEISHQSSEMNL  353 (367)
Q Consensus       338 d~li~~l~~~~~~~~~  353 (367)
                      |+|+++|+.+.+++..
T Consensus       895 Drf~~al~~i~~e~~~  910 (993)
T PLN02414        895 DRFCDALISIREEIAD  910 (993)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.93  E-value=3.5e-24  Score=204.36  Aligned_cols=272  Identities=15%  Similarity=0.072  Sum_probs=187.1

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|+++..+|++  +...++..|++++.++.++++.+|++++++.+++ ++      .+|++++++|++|.+.|+++|.
T Consensus        74 g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~------~~v~i~~~~~~~G~~~~~~~i~  147 (356)
T cd06451          74 GDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDI------KAVTLTHNETSTGVLNPLEGIG  147 (356)
T ss_pred             CCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCC------CEEEEeccCCCcccccCHHHHH
Confidence            3456666678887  4566778899999999887789999999999976 43      4888889999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhcc--CCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF--TDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~--~~~~yl~~~  184 (367)
                      ++|+++|+++++|++|+.+..+.+...   .   .+|+++.++|||+++|.|+|+++.+++ .......  ....+....
T Consensus       148 ~~a~~~~~~li~D~~~~~g~~~~~~~~---~---~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~  220 (356)
T cd06451         148 ALAKKHDALLIVDAVSSLGGEPFRMDE---W---GVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDL  220 (356)
T ss_pred             HHHHhcCCEEEEeeehhccCccccccc---c---CccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecH
Confidence            999999999999999876544322111   1   359999999999999999999998653 3332211  000110000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .             .+..        +..          ..+....+..+ ...++.++++.+...|++++.++..++++
T Consensus       221 ~-------------~~~~--------~~~----------~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~  269 (356)
T cd06451         221 L-------------LLLK--------YWG----------EGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAK  269 (356)
T ss_pred             H-------------HHHh--------hhc----------ccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            0             0000        000          00000011111 13455677777778889999999999999


Q ss_pred             HHHHHhcCCCCeEEeCCC--CceeE-EEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPP--SMGLV-CFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~--~~~~v-~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|.++ |+++..++  ..+.+ +++++. .....++.+.|.++ |+ .+.++. ...+.++|+++ +++++++|++
T Consensus       270 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~gI-~~~~g~~~~~~~~iRis~-~~~~~~e~v~  345 (356)
T cd06451         270 ALREGLEAL-GLKLLAKPELRSPTVTAVLVPE-GVDGDEVVRRLMKRYNI-EIAGGLGPTAGKVFRIGH-MGEATREDVL  345 (356)
T ss_pred             HHHHHHHHc-CCeeccCcccCCCceEEEECCC-CCCHHHHHHHHHHhCCE-EEecccccccCCEEEEec-CCCCCHHHHH
Confidence            999999987 88887543  23444 344443 23356899999988 74 444332 22345999976 6778999999


Q ss_pred             HHHHHHHHHHH
Q psy3048         339 FAWNEISHQSS  349 (367)
Q Consensus       339 ~li~~l~~~~~  349 (367)
                      +++++|+++++
T Consensus       346 ~~~~~l~~~~~  356 (356)
T cd06451         346 GVLSALEEALK  356 (356)
T ss_pred             HHHHHHHHHhC
Confidence            99999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=1.8e-23  Score=200.07  Aligned_cols=276  Identities=13%  Similarity=0.069  Sum_probs=189.0

Q ss_pred             CceEEEecCCcchh-HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          29 SRLVAYASDQSNSS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        29 ~~~~v~~s~~~H~s-~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      ++.+|+++...|.+ +...++..|++++.++.++++.+|++++++++++.++    ..++.+++++|++|.+.|+++|++
T Consensus        78 ~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~i~~I~~  153 (363)
T TIGR02326        78 DGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGILNPIEAVAK  153 (363)
T ss_pred             CCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCccccCcHHHHHH
Confidence            35566666666655 3566778899999999988899999999999976432    246888899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcc-ccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRV-YLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~-yl~~~~~  186 (367)
                      +||+||++++||++|+.+..+.+...   .   .+|++++++|||+++|+|+|+++++.+ .+.+......+ ++...  
T Consensus       154 l~~~~g~~livD~~~~~g~~~~~~~~---~---~~D~~~~s~~K~l~~p~G~G~l~~~~~-~~~~~~~~~~~~~~~~~--  224 (363)
T TIGR02326       154 LAHRHGKVTIVDAMSSFGGIPIDIAE---L---HIDYLISSANKCIQGVPGFGFVIARQA-ELAACKGNARSLSLDLY--  224 (363)
T ss_pred             HHHHcCCEEEEEccccccCcccchhh---c---CccEEEecCccccccCCcceEEEECHH-HHHHhhcCCCceeecHH--
Confidence            99999999999999987655433211   1   359999999999999999999999654 23322111111 10000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l  265 (367)
                                 ..|..         .  ...++.   ..|+.   +.....++..+++.+..+ |++++.++..++++++
T Consensus       225 -----------~~~~~---------~--~~~~~~---~~ft~---~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l  276 (363)
T TIGR02326       225 -----------DQWRC---------M--EDNHGK---WRFTS---PTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTL  276 (363)
T ss_pred             -----------HHHHH---------H--hccCCC---CCCCC---cHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence                       00000         0  000000   11221   112345666777776565 5888999999999999


Q ss_pred             HHHhcCCCCeEEeCCC--Ccee-EEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPP--SMGL-VCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~--~~~~-v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      ++.|+++ |++++.++  ..+. ++|.+++. .....++.+.|.++|+ .+.++...+..++|++. +.+++.+|+++++
T Consensus       277 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi-~v~~g~~~~~~~iRi~~-~~~~~~edv~~~l  353 (363)
T TIGR02326       277 VAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGF-VIYPGKVSQVDCFRIGN-IGEVDAADITRLL  353 (363)
T ss_pred             HHHHHHc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCE-EEECCcCCCCCEEEEec-CCCCCHHHHHHHH
Confidence            9999887 88876543  3443 46766542 1234678889988885 44444323346899964 4678999999999


Q ss_pred             HHHHHHH
Q psy3048         342 NEISHQS  348 (367)
Q Consensus       342 ~~l~~~~  348 (367)
                      ++|++++
T Consensus       354 ~~l~~~l  360 (363)
T TIGR02326       354 TAIGKAM  360 (363)
T ss_pred             HHHHHHh
Confidence            9998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=6.7e-23  Score=197.70  Aligned_cols=270  Identities=14%  Similarity=0.100  Sum_probs=184.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec--CCCCCcCHHHHHHHHHHHhh-CCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLA-KGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~~~~d~~~L~~~l~~~~~-~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|++...+++..|++++.+++  ++++.+|+++|++++++..+ .+..+.+|+++++++++|.+.|+++|+
T Consensus       102 gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~  181 (387)
T PRK09331        102 GDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVA  181 (387)
T ss_pred             CCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHH
Confidence            456788899999999999999999999998  66789999999999976421 122357899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||+||++++||++|+.+.++.+...   .+   +|++++++|||+++|+|+|++++++ +.+........+|..... 
T Consensus       182 ~la~~~g~~livD~a~~~g~~~~~~~~---~g---~D~~~~s~~K~l~~~~~~G~l~~~~-~~i~~~~~~~~~~~~~~~-  253 (387)
T PRK09331        182 KVAHEYGIPFLLNGAYTVGRMPVDGKK---LG---ADFIVGSGHKSMAASAPSGVLATTE-EYADKVFRTSRKFGVKEV-  253 (387)
T ss_pred             HHHHHcCCEEEEECCcccCCcCCCHHH---cC---CCEEEeeCcccccCCCCEEEEEECH-HHHhhcccccCCCcccce-
Confidence            999999999999999998766543221   23   4999999999999999999988854 334332222222211100 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                             .+                              +... .....+..+.+++..+. +.+ +..++..+++++++
T Consensus       254 -------~~------------------------------~~~~-~~~~~~~~~~aal~~~~-~~~-~~~~~~~~~~~~l~  293 (387)
T PRK09331        254 -------EL------------------------------LGCT-LRGAPLVTLMASFPHVV-ERV-KRWDEEVKKARWFV  293 (387)
T ss_pred             -------ee------------------------------ecee-cCchHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHH
Confidence                   00                              0000 00011233344444322 112 34566788999999


Q ss_pred             HHhcCCCCeEEeCC--CCceeEEEEEcCC-------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         267 DLVEKDDRFELVCP--PSMGLVCFRLKGD-------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       267 ~~L~~~~g~~~~~~--~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      +.|++++|++++.+  ...+++.+..+..       .....++.+.|.++|+...   ......++|+. + ...+++|+
T Consensus       294 ~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~---~~~~~~i~ri~-~-~g~t~~di  368 (387)
T PRK09331        294 DELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGI---KPGATKEFKLS-T-YGLTWEQV  368 (387)
T ss_pred             HHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEE---ccCCceEEEEE-e-ccCCHHHH
Confidence            99999999999853  2445566654421       1112468888988885311   11233467773 3 33589999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy3048         338 AFAWNEISHQSSEMN  352 (367)
Q Consensus       338 d~li~~l~~~~~~~~  352 (367)
                      ++++++|+++.++..
T Consensus       369 ~~l~~aL~~i~~~~~  383 (387)
T PRK09331        369 EYVADAFKEIAEKYG  383 (387)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999988654

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.92  E-value=2.1e-23  Score=195.21  Aligned_cols=282  Identities=16%  Similarity=0.110  Sum_probs=203.5

Q ss_pred             eEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      -.|++..++-++  |.+.++..|++++.+..+.+-.+|+++++++++++..    ...|.++|+.|+||+.+|+++|+++
T Consensus        81 dkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~~  156 (383)
T COG0075          81 DKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAKA  156 (383)
T ss_pred             CeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHHH
Confidence            344445566666  6777888999999999998999999999999985542    3589999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC-c-cccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD-R-VYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~-~yl~~~~~  186 (367)
                      ||+||+.++||+.-+.+....+..+   .|+   |+++.+++|++++|+|.|++.++++. ++...... + .|+.-   
T Consensus       157 ~k~~g~l~iVDaVsS~Gg~~~~vd~---wgi---Dv~itgSQK~l~~PPGla~v~~S~~a-~e~~~~~~~~~~ylDL---  226 (383)
T COG0075         157 AKEHGALLIVDAVSSLGGEPLKVDE---WGI---DVAITGSQKALGAPPGLAFVAVSERA-LEAIEERKHPSFYLDL---  226 (383)
T ss_pred             HHHcCCEEEEEecccCCCcccchhh---cCc---cEEEecCchhccCCCccceeEECHHH-HHHHhcCCCCceeecH---
Confidence            9999999999997665544433222   366   99999999999999999999997653 33322222 2 23211   


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                 ..|...+-.           .+.   ..++...   ...+++..+|+.+..+|++++++|++.++++++
T Consensus       227 -----------~~~~~~~~~-----------~~~---~p~Tppv---~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r  278 (383)
T COG0075         227 -----------KKWLKYMEK-----------KGS---TPYTPPV---NLIYALREALDLILEEGLEARIARHRRLAEALR  278 (383)
T ss_pred             -----------HHHHHHHhh-----------cCC---CCCCCCH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                       122111000           000   1222211   234788899999999999999999999999999


Q ss_pred             HHhcCCCCeEEeCCC--Cc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP--SM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~--~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.+..+ |++++.++  .+ ++.++.++. ....+++...+.+++.+.+.++... ....+||. +..+.+.+|+...+.
T Consensus       279 ~~~~al-Gl~~~~~~~~~s~tvta~~~P~-g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIG-hMG~~~~~dv~~~l~  355 (383)
T COG0075         279 AGLEAL-GLELFADPERRSPTVTAIKVPE-GVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIG-HMGNVRPEDVLAALA  355 (383)
T ss_pred             HHHHHc-CCccccCcccCCCceEEEECCC-CCCcHHHHHHHHHhCCEEecccccccCccEEEEe-cCccCCHHHHHHHHH
Confidence            999998 99988733  33 455666654 2223445557777766666544322 23589995 456899999999999


Q ss_pred             HHHHHHHHhhCCCCC
Q psy3048         343 EISHQSSEMNLPRGS  357 (367)
Q Consensus       343 ~l~~~~~~~~~~~~~  357 (367)
                      +|+.++.++..+...
T Consensus       356 ale~~L~~~g~~~~~  370 (383)
T COG0075         356 ALEAALRELGVKVEA  370 (383)
T ss_pred             HHHHHHHHcCCcccc
Confidence            999999988765443

>PRK02948 cysteine desulfurase; Provisional

Probab=99.91  E-value=1.2e-22  Score=195.53  Aligned_cols=263  Identities=14%  Similarity=0.166  Sum_probs=183.7

Q ss_pred             ceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-+|+++..+|.++....   +..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.
T Consensus        88 g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~------~lv~~~~~~n~tG~~~~~~~I~  161 (381)
T PRK02948         88 KKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPDT------VLASIQHANSEIGTIQPIAEIG  161 (381)
T ss_pred             CCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCC------EEEEEECCcCCcEeehhHHHHH
Confidence            457888899999976654   4579999999998889999999999987654      5899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|+++|+++++|++|+.+..+.+.     .. ..+|+++.++||++ +|+|+|++++++......      . ......
T Consensus       162 ~l~~~~~~~vivD~~~~~g~~~~~~-----~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~------~-~~~~~~  227 (381)
T PRK02948        162 ALLKKYNVLFHSDCVQTFGKLPIDV-----FE-MGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKP------V-FPGTTH  227 (381)
T ss_pred             HHHHHcCCEEEEEChhhccccccCc-----cc-CCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCC------c-ccCCCC
Confidence            9999999999999998776543321     11 13599999999975 599999999865421110      0 000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           ...+                     .++       +   ......+++.++++... ++++++.++..++++++.
T Consensus       228 -----~~~~---------------------~~~-------t---~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~  270 (381)
T PRK02948        228 -----EKGF---------------------RPG-------T---VNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFL  270 (381)
T ss_pred             -----CCCc---------------------CCC-------C---ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence                 0000                     000       0   01112345555565542 467888899999999999


Q ss_pred             HHhcCCCCeEEeC--CC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--------------------CCee
Q psy3048         267 DLVEKDDRFELVC--PP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--------------------QGRP  321 (367)
Q Consensus       267 ~~L~~~~g~~~~~--~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------------~~~~  321 (367)
                      +.|+++ |+++..  ++   ...++.|.+++.+  ..++...|.++|+ .+..+..                    ....
T Consensus       271 ~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~gI-~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~  346 (381)
T PRK02948        271 EQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGIE--GQYTMLECNRRGI-AISTGSACQVGKQEPSKTMLAIGKTYEEAKQ  346 (381)
T ss_pred             HHHhcC-CCCEEEeCCCccCcCCEEEEEeCCCC--HHHHHHhcccCCE-EEEchHhcCCCCCCCCHHHHHcCCChHHhCc
Confidence            999987 554432  11   1346677765422  4667778877774 4442221                    1136


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      ++|+|+ +.++|++|+|+++++|+++++++.+.
T Consensus       347 ~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~~  378 (381)
T PRK02948        347 FVRFSF-GQQTTKDQIDTTIHALETIGNQFYRG  378 (381)
T ss_pred             eEEEEc-CCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            899976 68999999999999999998876554

>PRK14012 cysteine desulfurase; Provisional

Probab=99.91  E-value=1.6e-22  Score=196.20  Aligned_cols=263  Identities=16%  Similarity=0.151  Sum_probs=178.4

Q ss_pred             ceEEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|.+...++..   .|++++.++.++++.+|+++|++++++++      .+|++++++|++|.+.|+++|.
T Consensus        94 gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t------~lv~~~~~~n~tG~~~~~~~I~  167 (404)
T PRK14012         94 GKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT------ILVSIMHVNNEIGVIQDIAAIG  167 (404)
T ss_pred             CCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC------EEEEEECcCCCccchhhHHHHH
Confidence            34677888999998766543   59999999998889999999999997765      4899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||++|+++++|++|+.+..+.+..     . ..+|++++++||++ +|.|+|++++++.... +   ..+.+...+..
T Consensus       168 ~la~~~g~~vivD~a~~~g~~~~~~~-----~-~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~-~---~~~~~~g~~~~  236 (404)
T PRK14012        168 EICRERGIIFHVDAAQSVGKVPIDLS-----K-LKVDLMSFSAHKIY-GPKGIGALYVRRKPRV-R---LEAQMHGGGHE  236 (404)
T ss_pred             HHHHHcCCEEEEEcchhcCCcccCcc-----c-CCCCEEEEehhhcc-CCCceEEEEEecCCCC-C---CCceecCCCcc
Confidence            99999999999999998876643311     1 14699999999954 6889999999765322 1   11111111100


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..+                     ..|+          ......+++.+++... ..++.++.++..++++++.
T Consensus       237 ------~~~---------------------~~gt----------~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~  278 (404)
T PRK14012        237 ------RGM---------------------RSGT----------LPTHQIVGMGEAARIA-KEEMATENERIRALRDRLW  278 (404)
T ss_pred             ------CCc---------------------cCCC----------cCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence                  000                     0000          0001123444555543 3456778889999999999


Q ss_pred             HHhcCCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCc---EEEEEeE--------------ECCeeEEE
Q psy3048         267 DLVEKDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQ---IYIIKAS--------------FQGRPFLR  324 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~---~~~~~~~--------------~~~~~~lR  324 (367)
                      +.|++++++.+..++     ....++|.+.+    ..++...|...++   ..+.+..              ......+|
T Consensus       279 ~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR  354 (404)
T PRK14012        279 NGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE----GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIR  354 (404)
T ss_pred             HHHhcCCCEEEeCCccccCCCEEEEEEeCcC----HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEE
Confidence            999999998876431     22235555432    2355555532210   0011110              01236899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +++ ++++|++|+|+++++|++++++++
T Consensus       355 ls~-~~~~t~~dvd~~~~~l~~~~~~~~  381 (404)
T PRK14012        355 FSL-GRFTTEEEIDYAIELVRKSIGKLR  381 (404)
T ss_pred             EEe-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence            965 788999999999999999988764

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.91  E-value=3.1e-22  Score=191.87  Aligned_cols=277  Identities=14%  Similarity=0.099  Sum_probs=186.3

Q ss_pred             ceEEEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.+++.+ ..++..  ...++..|++++.++.++++.+|++++++++++.++    ..+|.+++++|++|.+.|+++|.+
T Consensus        81 ~~vlv~~-~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~~~~i~~  155 (368)
T PRK13479         81 GKVLVPD-NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPR----ITHVALVHCETTTGILNPLDEIAA  155 (368)
T ss_pred             CeEEEEe-CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCC----CcEEEEEcccCccccccCHHHHHH
Confidence            4445444 455554  467788999999999987788999999999875432    247889999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +||++|+++++|++|+.+..+.+.     ... .+|++++++|||+++|+|+|+++++.+ .++.......++...    
T Consensus       156 l~~~~~~~livDa~~~~g~~~~~~-----~~~-~~d~~v~s~~K~l~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~----  224 (368)
T PRK13479        156 VAKRHGKRLIVDAMSSFGAIPIDI-----AEL-GIDALISSANKCIEGVPGFGFVIARRS-ELEACKGNSRSLSLD----  224 (368)
T ss_pred             HHHHcCCEEEEEcccccCCccccc-----ccc-CceEEEecCccccccCCCceEEEECHH-HHHHhhcCCCCeeec----
Confidence            999999999999988765443221     111 359999999999999999999998643 333221111111000    


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~  266 (367)
                             + ...| .           ...+.+.   ..++.   .....+++.++++.+..+ ++++..++..++++++.
T Consensus       225 -------~-~~~~-~-----------~~~~~~~---~~~t~---~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~  278 (368)
T PRK13479        225 -------L-YDQW-A-----------YMEKTGQ---WRFTP---PTHVVAAFYQALLELEEEGGVPARGARYANNQRTLV  278 (368)
T ss_pred             -------H-HHHH-h-----------hhcccCC---CCCCC---cHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence                   0 0000 0           0000000   11111   112335666777766555 48888899999999999


Q ss_pred             HHhcCCCCeEEeCCC--Cc-eeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP--SM-GLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~--~~-~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|+++ |++++.++  .. .+++|.++... ....++.+.|.++|++ +.+.......++|++. ..+++++|++++++
T Consensus       279 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~-v~~g~~~~~~~iRis~-~~~~t~edi~~~l~  355 (368)
T PRK13479        279 AGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFV-IYPGKLTQVDTFRIGC-IGDVDAADIRRLVA  355 (368)
T ss_pred             HHHHHc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEE-EecCCCCCCCEEEEec-CCCCCHHHHHHHHH
Confidence            999988 88876543  22 34667665321 2356899999999854 4333222245899964 46889999999999


Q ss_pred             HHHHHHHHh
Q psy3048         343 EISHQSSEM  351 (367)
Q Consensus       343 ~l~~~~~~~  351 (367)
                      +|+++++++
T Consensus       356 ~L~~~l~~~  364 (368)
T PRK13479        356 AIAEALYWM  364 (368)
T ss_pred             HHHHHHHHc
Confidence            999998765

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.91  E-value=2.3e-22  Score=205.38  Aligned_cols=296  Identities=14%  Similarity=0.048  Sum_probs=196.7

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      .++++.|.|...+           |...|-+|+++...|.+....+...|++++.|+++++|.+|+++|++++++..   
T Consensus       574 A~Lmair~yh~~~-----------Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~---  639 (954)
T PRK12566        574 AGLLAIRRYHRSR-----------GQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAG---  639 (954)
T ss_pred             HHHHHHHHHHHhc-----------CCCCCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccC---
Confidence            4667777766655           22347788899999988877788899999999998889999999999997321   


Q ss_pred             CccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCccee
Q psy3048          82 LIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSA  161 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~  161 (367)
                      ....+|+++++++..+..+|+++|+++||++|+++++|+|+..........     +--.+|++++++||||+.|.|.|+
T Consensus       640 ~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P-----g~~GADi~~~s~HKtf~~P~G~GG  714 (954)
T PRK12566        640 DRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP-----ADIGADVSHMNLHKTFCIPHGGGG  714 (954)
T ss_pred             CCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh-----hhcCCCEEEecCCcccCcCccCCC
Confidence            113578889887765555779999999999999999999997544433210     112469999999999999999999


Q ss_pred             EEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHH
Q psy3048         162 MWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLW  240 (367)
Q Consensus       162 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  240 (367)
                      .++..-...+.    -.+|+.....-  +....                    ..+.|+.     ...+.. ...+...|
T Consensus       715 P~vG~iav~~~----L~pfLp~~P~~--d~~G~--------------------~~r~ga~-----S~~~~gsa~~l~~A~  763 (954)
T PRK12566        715 PGMGPIGVRAH----LAPFVANHPVV--PVEGP--------------------DPNNGAV-----SAAPWGSASILPISW  763 (954)
T ss_pred             Cccchhhhhhh----hhhhccCCCCc--CCCCC--------------------CCCCCce-----eecccchHHHHHHHH
Confidence            88854111110    01222211000  00000                    0000110     001111 11245667


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC---CCceeEEEEEc---CC-chHHHHHHHHHhccCcEEEE
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP---PSMGLVCFRLK---GD-NDLTNQLYERLMSHKQIYII  313 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~---~~~~~v~f~~~---~~-~~~~~~l~~~L~~~g~~~~~  313 (367)
                      ..++.+|.+ +.+..+....+++|+.++|.+..++.. .+   +.++...+++.   .. .....++.++|.+.|.....
T Consensus       764 ~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~-~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt  841 (954)
T PRK12566        764 MYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLY-RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPT  841 (954)
T ss_pred             HHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCc-CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeE
Confidence            778888888 777777778999999999987433322 22   22343333332   11 12346899999988854333


Q ss_pred             EeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         314 KASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       314 ~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                       ..+...+.+|+++ +.+++++|||+|+++|+.+.+++
T Consensus       842 -~~fPv~~~LmIep-TE~eskeEIDrf~eAL~~I~~e~  877 (954)
T PRK12566        842 -MSFPVPGTLMVEP-TESESKAELDRFVEAMLSIRAEI  877 (954)
T ss_pred             -EeeccCCEEEEEe-eeeCCHHHHHHHHHHHHHHHHHH
Confidence             3444567899976 67889999999999999998885

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.91  E-value=6.3e-22  Score=188.49  Aligned_cols=274  Identities=14%  Similarity=0.111  Sum_probs=183.6

Q ss_pred             ceEEEecCCcchh-HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s-~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.+|+.+...|.+ +...++..|++++.++.++++.+|++++++++++.++    ..++++++++|++|.+.|+++|.++
T Consensus        75 ~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~~G~~~~~~~i~~l  150 (355)
T TIGR03301        75 GKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPD----ITHVATVHHETTTGILNPLEAIAKV  150 (355)
T ss_pred             CeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCC----ceEEEEEecCCcccchhHHHHHHHH
Confidence            4556555555443 4566778999999999877789999999999976432    3577788899999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |++||+++++|++++.+..+.+   ....   .+|++++++|||+++|+|+|+++++++ .++.......++...     
T Consensus       151 ~~~~~~~livD~~~s~g~~~~~---~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~-----  218 (355)
T TIGR03301       151 ARSHGAVLIVDAMSSFGAIPID---IEEL---DVDALIASANKCLEGVPGFGFVIARRD-LLEASAGNARSLYLD-----  218 (355)
T ss_pred             HHHcCCEEEEEeccccCCcccc---hhhc---CccEEEecCCcccccCCceeEEEECHH-HHHHhhCCCCCceee-----
Confidence            9999999999998876544322   1111   359999999999999999999998653 333321111111100     


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~  267 (367)
                            + ...| ..        .   .+.+.   ..++   .......++..+++.+..+| +++..++.+++++++.+
T Consensus       219 ------~-~~~~-~~--------~---~~~~~---~~~t---~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~  273 (355)
T TIGR03301       219 ------L-YDQW-AY--------M---EKTGK---WRFT---PPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVD  273 (355)
T ss_pred             ------H-HHHH-HH--------h---hhcCC---CCCC---CcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence                  0 0000 00        0   00000   0111   01112345566777776666 88889999999999999


Q ss_pred             HhcCCCCeEEeCCC--Cce-eEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPP--SMG-LVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~--~~~-~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ |++++.++  ..+ +++|+++.. .....++.++|.++|+ .+.++......++|+++ +.+++++|++++++.
T Consensus       274 ~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~i~~~~~~~~~~iRis~-~~~~~~~~i~~~~~~  350 (355)
T TIGR03301       274 GLRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGF-VIYPGKLTLADTFRIGT-IGEIDAADIERLLEA  350 (355)
T ss_pred             HHHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCE-EEECCccccccEEEEec-CCCCCHHHHHHHHHH
Confidence            99887 88876543  223 456666531 1234688899998885 44443322236899965 577899999999999


Q ss_pred             HHHH
Q psy3048         344 ISHQ  347 (367)
Q Consensus       344 l~~~  347 (367)
                      |+++
T Consensus       351 l~~~  354 (355)
T TIGR03301       351 IKDA  354 (355)
T ss_pred             HHhh
Confidence            9875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.91  E-value=1.4e-22  Score=196.16  Aligned_cols=280  Identities=14%  Similarity=0.068  Sum_probs=180.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCC----cceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh-hh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD----VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL-EE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g----~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl-~~  104 (367)
                      .-+|++++..|.+...++...|    ++++.+++++++.+|+++|++++.+++      .+|++++++ ++|.+.|+ ++
T Consensus       108 gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t------~~viv~~~~-~~G~~~~~l~~  180 (398)
T cd00613         108 RNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV------AALMVQYPN-TLGVFEDLIKE  180 (398)
T ss_pred             CCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe------EEEEEECCC-CCceecchHHH
Confidence            3467778999999988888776    899999987778899999999986655      477788875 78999885 99


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-----CcceeEEEecchhhhhhccCCcc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-----HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      |+++|++||+++++|++|+.+....+...   .   .+|++++++|||+ .|     +++|++++++ ..... +.  +.
T Consensus       181 i~~la~~~g~~livD~~~~~~~~~~~~~~---~---~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~-~~~~~-~~--~~  249 (398)
T cd00613         181 IADIAHSAGALVYVDGDNLNLTGLKPPGE---Y---GADIVVGNLQKTG-VPHGGGGPGAGFFAVKK-ELVRF-LP--GR  249 (398)
T ss_pred             HHHHHHhcCCEEEEEeccccccCCCChHH---c---CCCEEEeeccccC-CCCCCCCCceeEEEEhh-hhHhh-CC--CC
Confidence            99999999999999999876554332211   1   3599999999999 55     5677888754 22321 11  11


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      ........  .....+.. .+..  .....++ +    .++    . .+..+........++.+..++.+|++++.++..
T Consensus       250 ~~~~~~~~--~~~~~~~~-~~~~--~~~~~r~-e----~~~----~-~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~  314 (398)
T cd00613         250 LVGVTKDA--EGNRAFRL-ALQT--REQHIRR-E----KAT----S-NICTGQALLALMAAMYIVYLGPEGLKEIAERAH  314 (398)
T ss_pred             eecccccc--CCCcceEE-eccc--chhhccc-c----ccc----c-cceecHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            11000000  00000000 0000  0000000 0    000    0 000111122344555667778889999999999


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++++++.++|+++++..+...+....++|+++.. .....++.++|.++|+. +....+.+...+|+++ +.++|++|||
T Consensus       315 ~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~-~~~~~~~~~~~lRis~-~~~~t~edid  392 (398)
T cd00613         315 LNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFH-APTMYLPVDGTLMIEP-TETETKEELD  392 (398)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcc-ccccccCCCCeEEEEc-CCCCCHHHHH
Confidence            9999999999998655422223445667776531 23467899999988854 3222223457899975 7899999999


Q ss_pred             HHHHHH
Q psy3048         339 FAWNEI  344 (367)
Q Consensus       339 ~li~~l  344 (367)
                      +++++|
T Consensus       393 ~~~~~L  398 (398)
T cd00613         393 ALLEAL  398 (398)
T ss_pred             HHHHhC
Confidence            999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=2.4e-21  Score=185.82  Aligned_cols=267  Identities=13%  Similarity=0.119  Sum_probs=179.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhC-CCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAK-GLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~-~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|+++...|++...+++..|++++.++.+  .++.+|+++|++++++.+++ ...+.+|+++++++++|.+.|+++|.
T Consensus        90 gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~  169 (370)
T TIGR02539        90 GDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVA  169 (370)
T ss_pred             CCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHH
Confidence            4567778999999999999999999999986  35889999999999764321 12356888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|++||+++++|+||+.+.+..+...   .   .+|+++.++|||+..+.++|+++.+ +..++.......+|..... 
T Consensus       170 ~la~~~~~~livDea~~~g~~~~~~~~---~---~~di~v~s~sK~~~~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~-  241 (370)
T TIGR02539       170 KVCREKGVPLLLNCAYTVGRMPVSAKE---I---GADFIVGSGHKSMAASGPCGVLGMS-EEWEDIVLRKSRYSPVKEV-  241 (370)
T ss_pred             HHHHHcCCeEEEECccccCCcCCCHHH---c---CCCEEEeeCcccccCCCCEEEEEEC-HHHHhhhcccccCCcccee-
Confidence            999999999999999987643322111   1   3599999999999877778888875 3434332222222211100 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                             .+    |                  +       ..  .....+..+.+++... .+.++ .+++..+++++++
T Consensus       242 -------~~----~------------------~-------~~--~~~~~~~~~~~al~~~-~~~l~-~~~~~~~~~~~l~  281 (370)
T TIGR02539       242 -------EL----L------------------G-------CT--SRGAPIVTMMASFPHV-VERVK-RWDEEVKKTRWFV  281 (370)
T ss_pred             -------ee----e------------------c-------cc--ccccHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHH
Confidence                   00    0                  0       00  0001122333333321 22222 2344556678999


Q ss_pred             HHhcCCCCeEEeC--CCCceeEEEEEcCC-------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         267 DLVEKDDRFELVC--PPSMGLVCFRLKGD-------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       267 ~~L~~~~g~~~~~--~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      +.|+++ |++++.  ++..+++.++++..       ......+.++|.++|++.+.+   ....++|+++ .. .+++|+
T Consensus       282 ~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~---~~~~~iRis~-~~-~t~e~i  355 (370)
T TIGR02539       282 AELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRS---GQTKYFKLSV-YG-LTKEQV  355 (370)
T ss_pred             HHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccC---CcceEEEEEe-cC-CCHHHH
Confidence            999997 788753  56778888876421       112346888999998641222   2245899976 33 379999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         338 AFAWNEISHQSSE  350 (367)
Q Consensus       338 d~li~~l~~~~~~  350 (367)
                      ++++++|+++.++
T Consensus       356 ~~l~~~L~~~~~~  368 (370)
T TIGR02539       356 EYVVDSFEEIVEE  368 (370)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998765

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.90  E-value=2.1e-22  Score=193.42  Aligned_cols=267  Identities=15%  Similarity=-0.014  Sum_probs=177.2

Q ss_pred             CCcchhHHH--HHHhCCc-ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcC
Q psy3048          37 DQSNSSVEK--SAIIGDV-PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN  113 (367)
Q Consensus        37 ~~~H~s~~~--~~~~~g~-~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~g  113 (367)
                      ...|.+-..  .++..|+ +++.++.+.++.+|+++++.     +      ..|+++|.+|.+|.+.|+++|++  |++|
T Consensus        98 ~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~~-----~------~~V~~~h~~t~tG~~~pi~~I~~--~~~g  164 (378)
T PRK03080         98 WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVDF-----D------RDVVFTWNGTTTGVRVPVARWIG--ADRE  164 (378)
T ss_pred             eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcCC-----C------CCEEEEecCCccceeccchhhcc--ccCC
Confidence            356666333  2355788 99999887777888777442     2      25889999999999999999999  8999


Q ss_pred             cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCC
Q psy3048         114 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSP  193 (367)
Q Consensus       114 i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  193 (367)
                      ++++||++|+.+..+.+-.        .+|++++++||||++|+|+|+++++++ .+.+......++   ...    ...
T Consensus       165 ~~~vVDa~qs~G~~pidv~--------~iD~~~~s~~K~l~~P~G~g~l~v~~~-~~~~~~p~~~~~---~~~----~~~  228 (378)
T PRK03080        165 GLTICDATSAAFALPLDWS--------KLDVYTFSWQKVLGGEGGHGMAILSPR-AVERLESYTPAR---PIP----KFF  228 (378)
T ss_pred             CeEEEecccccccCCCCHH--------HCcEEEEehhhhCCCCCceEEEEECHH-HHHhhhcccCCC---CCc----hhh
Confidence            9999999999988876532        249999999999999999999999754 333221111000   000    000


Q ss_pred             Cchh-hhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhc
Q psy3048         194 DYTV-MNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVE  270 (367)
Q Consensus       194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L~  270 (367)
                      ++.. -.+      .+ ..++.    +        ...+.. ....++.++++.+... |++++.+|++++++++++.|+
T Consensus       229 ~~~~~~~~------~~-~~~~~----~--------t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~  289 (378)
T PRK03080        229 RLTKGGKA------IE-NSFKG----Q--------TINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAE  289 (378)
T ss_pred             eeccchHH------hh-hhhcC----C--------cccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            0000 000      00 00000    0        001111 1224556788888887 899999999999999999999


Q ss_pred             CCCCeEEeCC-C--Cc-eeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         271 KDDRFELVCP-P--SM-GLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       271 ~~~g~~~~~~-~--~~-~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      ++++++++.+ +  .. .+++|++++.+ ....++..+|.+++++...+........+|+| .+.+++++||++++++|+
T Consensus       290 ~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis-~~~~~t~~di~~l~~al~  368 (378)
T PRK03080        290 KTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIW-CGPTVEPADVEALTPWLD  368 (378)
T ss_pred             hCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEe-cCCCCCHHHHHHHHHHHH
Confidence            9977777642 2  23 57888875410 23345666776676432221111124689997 478999999999999999


Q ss_pred             HHHHHhh
Q psy3048         346 HQSSEMN  352 (367)
Q Consensus       346 ~~~~~~~  352 (367)
                      ++++++.
T Consensus       369 ~~~~~~~  375 (378)
T PRK03080        369 WAFERLK  375 (378)
T ss_pred             HHHHHHh
Confidence            9888764

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.90  E-value=5e-21  Score=183.09  Aligned_cols=266  Identities=13%  Similarity=0.128  Sum_probs=176.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCC--CCcCHHHHHHHHHHHhhC-CCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAK-GLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~--~~~d~~~L~~~l~~~~~~-~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|++...+++..|++++.++.+.+  +.+|+++|++++++..+. +..+.+|++++++|++|.+.|+++|.
T Consensus        83 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~  162 (361)
T cd06452          83 GDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIA  162 (361)
T ss_pred             CCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHH
Confidence            345777889999999889999999999998754  489999999999754321 12356888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||++|+++++|+||+.+.+..+...   .+   +|+++.++||++++|.++|+++.++ ..+.+......+| .... 
T Consensus       163 ~~~~~~~~~vivD~a~~~g~~~~~~~~---~~---~d~~~~s~~K~l~~~~~~G~l~~~~-~~~~~l~~~~~~~-~~~~-  233 (361)
T cd06452         163 KVCHEYGVPLLLNGAYTVGRMPVSGKE---LG---ADFIVGSGHKSMAASAPIGVLATTE-EWADIVFRTSQMF-KIKE-  233 (361)
T ss_pred             HHHHHcCCeEEEECCcccCCcCCCHHH---cC---CCEEEecCCccccCCCCeEEEEECH-HHHHHHhcccccc-ccce-
Confidence            999999999999999986654332111   12   4999999999999888999888753 3343321111111 0000 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..+                              +. ...+......+++++... .+.+ +..++..+.++++.
T Consensus       234 ------~~~------------------------------~~-~~~~~~~~~~~~~al~~~-~~~~-~~~~~~~~~~~~l~  274 (361)
T cd06452         234 ------VEL------------------------------LG-CTLRGAPLVTLMASFPHV-KERV-KRWDEEVEKARWFV  274 (361)
T ss_pred             ------eee------------------------------ec-cccCchHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHH
Confidence                  000                              00 000001123334444332 2223 34455567789999


Q ss_pred             HHhcCCCCeEEeC--CCCceeEEEEEcCC-------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         267 DLVEKDDRFELVC--PPSMGLVCFRLKGD-------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       267 ~~L~~~~g~~~~~--~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      +.|++++|++++.  +...+++.++....       .....++.+.|.++|+. +.  ......++|++.  ...+++|+
T Consensus       275 ~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~-~~--~~~~~~~~ri~~--~g~~~e~~  349 (361)
T cd06452         275 AELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIH-GI--KPGLTRYFKLST--YGLTWEQV  349 (361)
T ss_pred             HHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCce-EE--cCCCceEEEEEe--cCCCHHHH
Confidence            9999999999874  33556666665421       11123688999888854 21  112234889954  23579999


Q ss_pred             HHHHHHHHHHH
Q psy3048         338 AFAWNEISHQS  348 (367)
Q Consensus       338 d~li~~l~~~~  348 (367)
                      +.++++|+++.
T Consensus       350 ~~l~~al~~~~  360 (361)
T cd06452         350 EYVVDAFKEIA  360 (361)
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.89  E-value=5.3e-22  Score=191.47  Aligned_cols=261  Identities=17%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecC-CCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i~dl~~  104 (367)
                      ++.+|+ ++.+|+|+.+++.+.|++++.|++   ++++.+|+++|+++|++.+.  . .++++++.+ ++.+|..+|+++
T Consensus       151 gd~VI~-p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~--k-ai~~Vv~Tp~t~~~g~~ddL~e  226 (444)
T TIGR03531       151 AKYVIW-PRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGP--D-NILCVLSTTSCFAPRSPDDIEE  226 (444)
T ss_pred             CCEEEE-ECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccC--C-CEEEEEEcCCcCCCcchhCHHH
Confidence            355554 557899999999999999999995   35699999999999986431  1 134444443 345568999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCC--CCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRG--LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~--~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |+++|++||+|+|+|+||+.+........  ..+  .+++|++++++||++..|.++|++++++++.++...   ..|..
T Consensus       227 Ia~la~k~gI~lIvDaAyg~~~~~~~~~~--~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~---~~y~g  301 (444)
T TIGR03531       227 IAKICANYDIPHIVNNAYGLQSNKYMELI--NKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEIS---KSYPG  301 (444)
T ss_pred             HHHHHHHcCCEEEEECcCcCcChhhhhhh--hccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHH---HhccC
Confidence            99999999999999999986432211110  012  235799999999999999888888887776554321   11111


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                               .......+|+.+..+|.+|+++++++..+++
T Consensus       302 ~~-----------------------------------------------~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a  334 (444)
T TIGR03531       302 RA-----------------------------------------------SASPSLDVLITLLSLGSKGYLELLKERKEMY  334 (444)
T ss_pred             CC-----------------------------------------------CChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            00                                               0012356788888999999999999999999


Q ss_pred             HHHHHHhcCCC---CeEEeCCCCceeEE--EEEcCC-chHHHHHHHHHhccCc---EEEEEeE---ECC-----------
Q psy3048         263 KKFADLVEKDD---RFELVCPPSMGLVC--FRLKGD-NDLTNQLYERLMSHKQ---IYIIKAS---FQG-----------  319 (367)
Q Consensus       263 ~~l~~~L~~~~---g~~~~~~~~~~~v~--f~~~~~-~~~~~~l~~~L~~~g~---~~~~~~~---~~~-----------  319 (367)
                      +++.++|+++.   |..++..|. |.++  +.+... +.....+-..|..+++   -.+.++.   ..+           
T Consensus       335 ~~l~~~L~~l~~~~~~~~~~~~~-n~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~  413 (444)
T TIGR03531       335 KYLKELLQKLAERHGERLLDTPE-NPISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTS  413 (444)
T ss_pred             HHHHHHHHHHHHhhCcEeecCCC-CceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeeccccccc
Confidence            99999998753   566765432 2222  222211 1224466667766552   1121111   011           


Q ss_pred             ---eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         320 ---RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       320 ---~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                         ..++-++ +...++++|||.|++.|+++
T Consensus       414 ~~~~~y~~~~-~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       414 NYPCPYITAA-AAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             CCCchhHHHH-HHhCCcHHHHHHHHHHHhhc
Confidence               1133332 34567899999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>KOG1549|consensus

Probab=99.88  E-value=2.2e-21  Score=181.07  Aligned_cols=264  Identities=16%  Similarity=0.118  Sum_probs=172.0

Q ss_pred             EEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|++.+.+|.+....++.   .|++|+++|+++++..|.+.|++.+++.|+      +|.+.+.+|..|++.|+++|+++
T Consensus       133 ~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~------lv~I~~Vnn~~gv~~Pv~EI~~i  206 (428)
T KOG1549|consen  133 HIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTR------LVSIMHVNNEIGVLQPVKEIVKI  206 (428)
T ss_pred             eEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCce------EEEEEecccCccccccHHHHHHH
Confidence            888999999999888765   689999999998899999999999999884      89999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |+++|+.+|+|+||+.|-...|--+     + .+|++++++|||++.| |+|++|++.....   ....+++.+++..+ 
T Consensus       207 cr~~~v~v~~DaAQavG~i~vDV~e-----l-n~D~~s~s~HK~ygp~-~iGaLYvr~~~~~---~~~~p~~~GGgq~r-  275 (428)
T KOG1549|consen  207 CREEGVQVHVDAAQAVGKIPVDVQE-----L-NADFLSISAHKIYGPP-GIGALYVRRKRPR---LRVEPPLSGGGQER-  275 (428)
T ss_pred             hCcCCcEEEeehhhhcCCccccHHH-----c-CchheeeecccccCCC-cceEEEEccCCCc---ccccCcccCCcccc-
Confidence            9999999999999999888765432     2 4599999999998855 5999999862211   12345555444321 


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG--LKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~~~~~~~la~~l~  266 (367)
                                                +.++|+.   +.       ..++.+-.+.+...  ..+.+.+.+   .+...+.
T Consensus       276 --------------------------~~rsGT~---~~-------~~~~~~gsA~e~~~~~~~~~~~~~~---~~~~~ll  316 (428)
T KOG1549|consen  276 --------------------------GLRSGTV---AT-------PLAVGLGSAAEFVNKEMAYDEAIIK---RLSEKLL  316 (428)
T ss_pred             --------------------------ccccCCc---Cc-------hhhhhhHHHHHHHHhhcchhHHHHH---HHHHHHH
Confidence                                      1222221   00       12233444444332  223444433   3555555


Q ss_pred             HHhc-CCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCcEEE----EEe---------EECCeeEEEEEe
Q psy3048         267 DLVE-KDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYI----IKA---------SFQGRPFLRFVV  327 (367)
Q Consensus       267 ~~L~-~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~----~~~---------~~~~~~~lRi~~  327 (367)
                      .++. .++++.+.+++     ..-.+.|.+.....+..++.+.-...|....    .++         ....+..+||++
T Consensus       317 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~  396 (428)
T KOG1549|consen  317 MGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISI  396 (428)
T ss_pred             HHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEee
Confidence            5553 35555555432     2333334321211111222222222221100    011         112356899976


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         328 TSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       328 ~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       ..||+++|++++++.+++.+....
T Consensus       397 -G~y~t~~di~~~~~~i~~~v~~~~  420 (428)
T KOG1549|consen  397 -GRYTTEEDIDYLVDAIKKLVSLLR  420 (428)
T ss_pred             -eeeCcHHHHHHHHHHHHHHHHhcc
Confidence             689999999999999999877643

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.87  E-value=1.1e-20  Score=180.25  Aligned_cols=226  Identities=15%  Similarity=0.156  Sum_probs=162.1

Q ss_pred             ceEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +.+|+++..+|.++.....   ..|++++.++.++++.+|+++|++++++++      .+|++++++|++|.+.|+++|.
T Consensus        88 ~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~------~lv~~~~~~n~tG~~~~~~~I~  161 (353)
T TIGR03235        88 KKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDT------LLVSIMHVNNETGSIQPIREIA  161 (353)
T ss_pred             CCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCC------EEEEEEcccCCceeccCHHHHH
Confidence            3678889999999876643   469999999998889999999999986544      5888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||++|+++++|++|+.+..+.+...      ..+|++++++|||+ +|+|+|+++++++....  ....+.+......
T Consensus       162 ~l~~~~~~~~ivD~a~~~g~~~~~~~~------~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~--~~~~~~~~~~~~~  232 (353)
T TIGR03235       162 EVLEAHEAFFHVDAAQVVGKITVDLSA------DRIDLISCSGHKIY-GPKGIGALVIRKRGKPK--APLKPIMFGGGQE  232 (353)
T ss_pred             HHHHHcCCEEEEEchhhcCCccccccc------cCCCEEEeehhhcC-CCCceEEEEEccCcccc--cccCceeeCCCCc
Confidence            999999999999999998776544211      14699999999985 69999999997652111  0111211111100


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..+                     .+|+          ......+++.++++.+ .++.+++.++..+++++++
T Consensus       233 ------~~~---------------------~~gt----------~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~  274 (353)
T TIGR03235       233 ------RGL---------------------RPGT----------LPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLR  274 (353)
T ss_pred             ------Ccc---------------------ccCC----------CChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence                  000                     0000          0112235566667654 4688999999999999999


Q ss_pred             HHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEE
Q psy3048         267 DLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYII  313 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~  313 (367)
                      +.|++ +|++++.++   ..++++|.+++  ...+++.+.|.+ + +.+.
T Consensus       275 ~~l~~-~g~~~~~~~~~~~~~i~~~~~~~--~~~~~v~~~L~~-~-i~v~  319 (353)
T TIGR03235       275 DALQT-LGVKLNGDPAETIPHILNFSIDG--VNSEALIVNLRA-D-AAVS  319 (353)
T ss_pred             HHhcc-CCeEEeCCcccccCCEEEEEeCC--cCHHHHHHHHhC-C-eEEE
Confidence            99988 799988643   24577887754  235678888864 5 4444

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.87  E-value=8.6e-21  Score=186.36  Aligned_cols=263  Identities=14%  Similarity=0.100  Sum_probs=173.5

Q ss_pred             ceEEEecCCcchhHHHHHHh----------CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc
Q psy3048          30 RLVAYASDQSNSSVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF   99 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----------~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i   99 (367)
                      .-.|++++..|.+....+..          .+.++..++++.+|.+|+++|++++++..     |.+|+++  .+.+|..
T Consensus       124 gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~~--~s~~g~~  196 (452)
T PTZ00094        124 HDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIAG--ASAYPRD  196 (452)
T ss_pred             CCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEEe--CCCCCCc
Confidence            45777788899876544321          11344455566679999999999997532     2355443  4569999


Q ss_pred             CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcc
Q psy3048         100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       100 ~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      .|+++|.++||++|++++||++|+.+.+..+....   .+..+|++++++||||.+|.| |++++++. ...........
T Consensus       197 ~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~-~~~~l~~~~~~  271 (452)
T PTZ00094        197 IDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTHKSLRGPRS-GLIFYRKK-VKPDIENKINE  271 (452)
T ss_pred             cCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCccCCCCCCc-eEEEEecc-cchHHHHhhcc
Confidence            99999999999999999999999998886543221   223569999999999999997 88887643 11110000000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      .++..          +                      .|+          .......++.++++.+...+.+++.++..
T Consensus       272 ~~~p~----------~----------------------~G~----------~~~~~iaal~~al~~~~~~~~~~~~~~i~  309 (452)
T PTZ00094        272 AVFPG----------L----------------------QGG----------PHNHQIAAIAVQLKEVQSPEWKEYAKQVL  309 (452)
T ss_pred             ccCCC----------C----------------------CCC----------chHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            00000          0                      000          00112356667777776678888889999


Q ss_pred             HHHHHHHHHhcCCCCeEEeCC---CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EE-----CCeeEEEEEecCC
Q psy3048         260 SLAKKFADLVEKDDRFELVCP---PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SF-----QGRPFLRFVVTSP  330 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~---~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~-----~~~~~lRi~~~~~  330 (367)
                      ++++++.+.|++. |+++..+   +...++.|...  +....++...|.+.|+ ++... .+     ..++.+|+++ +.
T Consensus       310 ~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI-~vs~~~~p~~~~~~~~~~vRis~-~~  384 (452)
T PTZ00094        310 KNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPF--GITGSKMEKLLDAVNI-SVNKNTIPGDKSALNPSGVRLGT-PA  384 (452)
T ss_pred             HHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcC--CCCHHHHHHHHHHCCc-EEecccCCCCCcCCCCCeEEECC-HH
Confidence            9999999999886 8888753   22334444332  2234577777766674 44321 11     1236899965 55


Q ss_pred             CCC----HHHHHHHHHHHHHHHHHh
Q psy3048         331 ETN----QCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       331 ~~~----~edid~li~~l~~~~~~~  351 (367)
                      +|+    ++||+++++.|.++++..
T Consensus       385 ~tt~g~~~~di~~l~~~l~~~~~~~  409 (452)
T PTZ00094        385 LTTRGAKEKDFKFVADFLDRAVKLA  409 (452)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            665    999999999999998853

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.87  E-value=4.8e-20  Score=170.25  Aligned_cols=294  Identities=17%  Similarity=0.151  Sum_probs=200.2

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      +++|+++|+|-..+           +...|-++++++++|=.....+.+.|.+|+.|+++++|.+|+++|++++.+++  
T Consensus       139 ~aGll~Ir~YHe~r-----------G~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~--  205 (496)
T COG1003         139 YAGLLAIRAYHESR-----------GEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNL--  205 (496)
T ss_pred             hHHHHHHHHHHHHc-----------CCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhccce--
Confidence            57899999998866           22458899999999999999999999999999999999999999999999777  


Q ss_pred             CCccEEEEEecCCCccccc-CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          81 GLIPCCLVATLGTTGTCAF-DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i-~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                          ..+.+|+|+| .|++ .+|.+|+++.|++|..++.|||.--..+-  ..++-..|.   |++-+|.||.|..|.|.
T Consensus       206 ----AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG--~~rPGd~G~---DV~HlNLHKTF~iPHGG  275 (496)
T COG1003         206 ----AALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVG--LARPGDMGF---DVVHLNLHKTFCIPHGG  275 (496)
T ss_pred             ----eEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhc--ccccccccc---ceEEeecccccccCCCC
Confidence                4888999877 8999 59999999999999999999985321111  111111234   99999999999888554


Q ss_pred             e-----eEEEecchhhhhhccCCccccccC----CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccc
Q psy3048         160 S-----AMWVKNANHLTNTFFTDRVYLKHT----DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPL  230 (367)
Q Consensus       160 g-----~l~~~~~~~~~~~~~~~~~yl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (367)
                      |     -+.++  .++       .+|+...    ...  ....++                 . ...+++.+    ....
T Consensus       276 GGPG~GPvgVk--~~L-------~pfLP~p~~~~~~~--~y~~~~-----------------~-~~~s~g~~----~a~~  322 (496)
T COG1003         276 GGPGAGPVGVK--AHL-------APFLPGPVVYHDVG--EYRLDY-----------------D-GKKSIGVS----AAPY  322 (496)
T ss_pred             CCCCCCceehH--hhc-------cccCCCCcccCCCc--cccccC-----------------C-CCccceee----cccc
Confidence            4     45443  222       2333221    110  001111                 0 00001100    0001


Q ss_pred             cccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCC---CceeEEEEEcCC----chHHHHHHHH
Q psy3048         231 SRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPP---SMGLVCFRLKGD----NDLTNQLYER  303 (367)
Q Consensus       231 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~----~~~~~~l~~~  303 (367)
                      +....-...|+.++.+|.+|+++.-+...-+++|+..+|+.  .++++..+   ..+...+...+.    .....+++++
T Consensus       323 Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKr  400 (496)
T COG1003         323 GSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKR  400 (496)
T ss_pred             CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHH
Confidence            11112255788999999999999999999999999999987  46665433   345555554421    2335689999


Q ss_pred             HhccCcEEEEEeEECC---eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         304 LMSHKQIYIIKASFQG---RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       304 L~~~g~~~~~~~~~~~---~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      |++.|..  .|+....   .+.+=|=+ .-.-+++++|+|++++.++.++.....
T Consensus       401 LlD~GfH--aPT~~FPliV~~tLMIEP-TEsEsk~eLDrf~dami~I~~Ea~~~~  452 (496)
T COG1003         401 LLDYGFH--APTMYFPLIVAGTLMIEP-TESESKEELDRFIDAMIAIREEADAVP  452 (496)
T ss_pred             HHhcCCC--CCcccCccccccceeecC-CCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999932  3332221   22333322 334568999999999999999876553

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.87  E-value=9.9e-21  Score=186.09  Aligned_cols=279  Identities=14%  Similarity=0.086  Sum_probs=177.4

Q ss_pred             CceEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      ++..|++++..|.+...+++.    .|++++.++++++ .+|+++|++++++++      .+|+++++ |++|.++|+++
T Consensus       153 ~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~t------~~v~l~~p-n~tG~v~~l~~  224 (447)
T PRK00451        153 KRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDDT------AAVVVQYP-NFFGVIEDLEE  224 (447)
T ss_pred             CCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCCe------EEEEEECC-CCCCeeCCHHH
Confidence            345688889999998887664    6999999999877 999999999997665      47788887 88999999999


Q ss_pred             HHHHHhhcCcEEEE--ecccccccccChhhhhhhCCCCCcceeeeccccc----cccCCcceeEEEecchhhhhhccCCc
Q psy3048         105 LGPICQEYNIWLHV--DAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKW----LLTNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       105 I~~l~~~~gi~l~v--D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~----l~~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      |+++||++|+|+++  |.. +.+.+..+       +.-.+|++++++|||    ..+++|+|+++++. ......   .+
T Consensus       225 I~~~a~~~~~~~iv~~d~~-~~g~~~~~-------~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~-~~~~~~---~~  292 (447)
T PRK00451        225 IAEIAHAGGALFIVGVDPV-SLGLLKPP-------GEYGADIVVGEGQPLGIPLSFGGPYLGFFATRK-KLVRQM---PG  292 (447)
T ss_pred             HHHHHHHCCCEEEEEcChH-HhccCCCc-------ccCCCCEEEECCCcCCCCCCCCCCCchHHHhhH-HHHhhC---CC
Confidence            99999999999998  543 22222111       112459999999997    23445899988854 223221   11


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccc-cccccc-ccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQ-TPLSRR-FRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                      ..+......  .....|.+.               ...+.....-...+ ..+++. ..+++...+++.++.+|++++.+
T Consensus       293 ~~~g~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~  355 (447)
T PRK00451        293 RLVGETVDA--DGKRGFVLT---------------LQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAE  355 (447)
T ss_pred             CEeeeeccc--CCCeeeEee---------------ccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            111110000  000001000               00000000000000 001110 11234444566678899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEE-E--EEeEECCeeEEEEEecCCCCC
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIY-I--IKASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~-~--~~~~~~~~~~lRi~~~~~~~~  333 (367)
                      +..++++++.++|++++|++++..+.+..++++++.   ...++.++|.++|++. +  .+.......++|+++ +.++|
T Consensus       356 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~---~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~-~~~~t  431 (447)
T PRK00451        356 QNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPK---PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCV-TEKRT  431 (447)
T ss_pred             HHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCC---CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEec-CCCCC
Confidence            999999999999999989988743334444455431   2578999999888542 1  111111135899976 56789


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQS  348 (367)
Q Consensus       334 ~edid~li~~l~~~~  348 (367)
                      ++|+++++++|++++
T Consensus       432 ~e~i~~l~~~L~~~~  446 (447)
T PRK00451        432 KEDIDALVAALGEVL  446 (447)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998763

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.86  E-value=7.3e-20  Score=172.91  Aligned_cols=259  Identities=19%  Similarity=0.135  Sum_probs=189.5

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      ++-+|+.++.+|.|+.++++..+++++.++++     |+++||+.+++....+..+++|++....++.|.+.||++|+++
T Consensus       122 ~~dli~~D~lnHASiidG~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L  196 (388)
T COG0156         122 KGDLIFSDELNHASIIDGIRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVEL  196 (388)
T ss_pred             CCcEEEEechhhhhHHHHHHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHH
Confidence            46889999999999999999999999999875     9999999998854322245789999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccCh-hhhhhhCCC--CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLP-EYAHLKRGL--EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      |++||++++||+||+.|.+-.. ..-....|+  +..|+++.+..|.|+   ..|..+..+........+..++|+++..
T Consensus       197 ~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG---s~Gg~v~g~~~~~d~L~~~ar~~ifSta  273 (388)
T COG0156         197 AEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG---SSGGYIAGSAALIDYLRNRARPFIFSTA  273 (388)
T ss_pred             HHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc---ccCceeeCcHHHHHHHHHhCCceeccCC
Confidence            9999999999999998876421 111111233  345999999999998   4666666666555544456677776643


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .      +.                                       ..+.+...+++.+.  ...+..++..++..++
T Consensus       274 l------pP---------------------------------------~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~  306 (388)
T COG0156         274 L------PP---------------------------------------AVAAAALAALRILE--EGPERRERLQELAAFF  306 (388)
T ss_pred             C------CH---------------------------------------HHHHHHHHHHHHHH--hCHHHHHHHHHHHHHH
Confidence            2      00                                       12234445555443  2345566788888999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeEECCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KASFQGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~~~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      ++.++.. |+.+ .+..++++.+.+.+ +..+.++.+.|.++| +++.    |+...+...+|++++ ...|++||++++
T Consensus       307 ~~~~~~~-~~~~-~~s~s~I~pv~~gd-~~~a~~~s~~l~~~G-i~v~~i~~PTVp~gtarlRi~lt-a~ht~~~I~~l~  381 (388)
T COG0156         307 RSLLKAL-GLVL-LPSESPIIPVILGD-EERALEASRALLEEG-IYVSAIRPPTVPKGTARLRITLT-AAHTEEDIDRLA  381 (388)
T ss_pred             HHHHHhc-CCcc-CCCCCCeeeeEeCC-HHHHHHHHHHHHHCC-eeEeeecCCCCCCCcceEEEEec-CCCCHHHHHHHH
Confidence            8666654 5554 34566777666654 566778888999997 4443    566678889999874 566899999999


Q ss_pred             HHHHHH
Q psy3048         342 NEISHQ  347 (367)
Q Consensus       342 ~~l~~~  347 (367)
                      ++|.++
T Consensus       382 ~~l~~~  387 (388)
T COG0156         382 EALSEV  387 (388)
T ss_pred             HHHHhh
Confidence            999875

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.86  E-value=4e-20  Score=192.81  Aligned_cols=288  Identities=11%  Similarity=-0.036  Sum_probs=180.2

Q ss_pred             eEEEecCCcchhHHHH---HHhCCcceEEEecC--------CCCCcCH--HHHHHHHHHHh----hCCCccEEEEEecCC
Q psy3048          31 LVAYASDQSNSSVEKS---AIIGDVPVRQLRSD--------DNGVLRG--DALLTAVKEDL----AKGLIPCCLVATLGT   93 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~---~~~~g~~v~~v~~~--------~~~~~d~--~~L~~~l~~~~----~~~~~~~~vv~~~~~   93 (367)
                      -.|+++...|.|....   ++..|++++.++++        ..+.+++  ++|++.+.+..    ..+....+|++++.+
T Consensus       123 d~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vs  202 (805)
T PLN02724        123 SHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSEC  202 (805)
T ss_pred             CeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccc
Confidence            3566688899886543   33469999999876        3344544  66776542100    011123599999999


Q ss_pred             CcccccCChhhHHHHHhhc--------CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEe
Q psy3048          94 TGTCAFDNLEELGPICQEY--------NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVK  165 (367)
Q Consensus        94 t~~G~i~dl~~I~~l~~~~--------gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~  165 (367)
                      |.+|.+.|++.|..+++..        +++++||+||+++.++.+..+     + .+|++++++|||+++|.|+|++|++
T Consensus       203 N~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~-----~-~~Dfl~~S~HK~~GgP~G~G~L~vr  276 (805)
T PLN02724        203 NFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSR-----Y-PADFVVVSFYKIFGYPTGLGALLVR  276 (805)
T ss_pred             cCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhh-----c-CCCEEEEecceeccCCCCceEEEEe
Confidence            9999999999876655532        367999999999888765322     1 4699999999999999999999998


Q ss_pred             cchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH
Q psy3048         166 NANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS  245 (367)
Q Consensus       166 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (367)
                      ++. +..   ..+.+.+.+..........|.     ......|+. ++.++.              .....+++.++++.
T Consensus       277 ~~~-~~~---l~p~~~GGg~~~~~~~~~~~~-----~~~~~~~~r-fE~GT~--------------n~~~i~~l~aal~~  332 (805)
T PLN02724        277 RDA-AKL---LKKKYFGGGTVAASIADIDFV-----KRRERVEQR-FEDGTI--------------SFLSIAALRHGFKL  332 (805)
T ss_pred             hhh-hhh---hcCCccCCCceEEEeccccee-----eccccHHHH-hcCCCc--------------chhHHHHHHHHHHH
Confidence            642 221   123333332110000000010     000001111 111111              11234667778888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCC------CeEEeCCC--------CceeEEEEEcCCc--hH-HHHHHHHHhccC
Q psy3048         246 YGLKGLQAYLRKHISLAKKFADLVEKDD------RFELVCPP--------SMGLVCFRLKGDN--DL-TNQLYERLMSHK  308 (367)
Q Consensus       246 ~~~~g~~~~~~~~~~la~~l~~~L~~~~------g~~~~~~~--------~~~~v~f~~~~~~--~~-~~~l~~~L~~~g  308 (367)
                      +...|++++.++..+|++|+.+.|++++      +++++++.        ..++++|.+.+.+  .+ ..++...+...|
T Consensus       333 l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~g  412 (805)
T PLN02724        333 LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSG  412 (805)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcC
Confidence            8777999999999999999999999886      58887642        4689999987532  12 122332223334


Q ss_pred             cEE-----EEEeEE-----------------------------C-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         309 QIY-----IIKASF-----------------------------Q-GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       309 ~~~-----~~~~~~-----------------------------~-~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +..     |.+...                             . ..+.+|+|+ .++||.+|||+|+++|++.-.
T Consensus       413 I~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~-g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        413 IQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSF-GYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             cEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEc-CccCCHHHHHHHHHHHHHHhh
Confidence            221     111100                             0 137899986 689999999999999999644

>PLN02721 threonine aldolase

Probab=99.86  E-value=5.7e-20  Score=175.01  Aligned_cols=262  Identities=15%  Similarity=0.146  Sum_probs=165.4

Q ss_pred             ceEEEecCCcchhHHH---HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC-CccEEEEEec-CCCcccccCC---
Q psy3048          30 RLVAYASDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG-LIPCCLVATL-GTTGTCAFDN---  101 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~---~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~-~~~~~vv~~~-~~t~~G~i~d---  101 (367)
                      .-.|++++.+|+++.+   .+...|++++.++.++++.+|+++|++++++..+.+ ..+.+|+++. +++++|.+.|   
T Consensus        80 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~  159 (353)
T PLN02721         80 GSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY  159 (353)
T ss_pred             CCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence            3457778899998877   466789999999988788999999999997421111 1235677755 4566788755   


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      +++|.++|++||+++++|++|..+.......... .....+|++++++||++.+|.|  ++++.+++.+.....     +
T Consensus       160 l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~-~~~~~~d~~~~s~sK~l~~~~G--~~~~~~~~~~~~~~~-----~  231 (353)
T PLN02721        160 TDKVGELAKRHGLKLHIDGARIFNASVALGVPVH-RLVKAADSVSVCLSKGLGAPVG--SVIVGSKSFIRKAKR-----L  231 (353)
T ss_pred             HHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHH-HHhhhCCEEEEecccccCCcee--eEEecCHHHHHhHHH-----H
Confidence            7899999999999999999985432110000110 0122469999999999987643  444444444332110     0


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      .....    .....                                      . .....+++..  .+...+.+++..++
T Consensus       232 ~~~~~----~~~~~--------------------------------------~-~~~~~~~~~~--l~~~~~~~~~~~~~  266 (353)
T PLN02721        232 RKTLG----GGMRQ--------------------------------------V-GVLAAAALVA--LQENVPKLEDDHKK  266 (353)
T ss_pred             HHhcC----CCeeh--------------------------------------h-HHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            00000    00000                                      0 0011111111  11112234455677


Q ss_pred             HHHHHHHhcCCCCeEE-eCCCCceeEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHH
Q psy3048         262 AKKFADLVEKDDRFEL-VCPPSMGLVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~-~~~~~~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      ++++.+.|++++++++ +.++..+.++++++.. .....+++++|.++|+. +.+   .+..++|+++ +.+++++|+++
T Consensus       267 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~-v~~---~~~~~lR~~~-~~~~~~~~i~~  341 (353)
T PLN02721        267 AKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVL-LMP---GNSSRIRVVT-HHQISDSDVQY  341 (353)
T ss_pred             HHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcE-Eec---CCCceEEEEe-cCcCCHHHHHH
Confidence            8899999999888876 5566677788887531 12357899999988854 332   2446899976 56789999999


Q ss_pred             HHHHHHHHHH
Q psy3048         340 AWNEISHQSS  349 (367)
Q Consensus       340 li~~l~~~~~  349 (367)
                      ++++|++++.
T Consensus       342 ~~~~l~~~~~  351 (353)
T PLN02721        342 TLSCFQQAAL  351 (353)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.86  E-value=1.2e-19  Score=158.02  Aligned_cols=285  Identities=13%  Similarity=0.139  Sum_probs=194.8

Q ss_pred             HHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCC-Cc
Q psy3048           7 AKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKG-LI   83 (367)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~-~~   83 (367)
                      ||..+..-+-+.++       .++ .|..+.++||+.+-+++..|++|.+||..  +.+.++++.+.+.|++.++.+ ..
T Consensus        85 ARe~KfavMhal~~-------~gd-~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~  156 (382)
T COG1103          85 AREAKFAVMHALCK-------EGD-WVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDP  156 (382)
T ss_pred             chhhHHHHHHHhcc-------CCC-EEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCC
Confidence            45555555444432       234 44558899999999999999999999974  579999999999999888765 66


Q ss_pred             cEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEE
Q psy3048          84 PCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMW  163 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~  163 (367)
                      |.+.++||+....|.+.|.++|+++|++||+++++.+||..+-++...-     .+ .+|+++.|+||.+.+...+|++-
T Consensus       157 ~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~k-----e~-g~DFiVgSGHKsmAAs~PiGvl~  230 (382)
T COG1103         157 PALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGK-----EI-GADFIVGSGHKSMAASAPIGVLA  230 (382)
T ss_pred             ceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccc-----cc-CCCEEEecCccchhccCCeeEEe
Confidence            8899999999999999999999999999999999999999887765321     11 46999999999999988899999


Q ss_pred             EecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH
Q psy3048         164 VKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL  243 (367)
Q Consensus       164 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (367)
                      ++.+. ....+..+..+......                       ..+.|..+..               ....+.+++
T Consensus       231 ~~eE~-ae~V~r~Sg~~~~~KEv-----------------------ellGCT~rGa---------------pivTlmASf  271 (382)
T COG1103         231 MSEEW-AEIVLRRSGRAFPKKEV-----------------------ELLGCTVRGA---------------PIVTLMASF  271 (382)
T ss_pred             ehhHH-HHHHHhhccccccccee-----------------------eeecccccCc---------------hHHHHHhcC
Confidence            86542 22233223222222211                       0233332211               012222222


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-C-CceeEEEEEcCCchHH-------HHHHHHHhccCcEEEEE
Q psy3048         244 RSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-P-SMGLVCFRLKGDNDLT-------NQLYERLMSHKQIYIIK  314 (367)
Q Consensus       244 ~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~-~~~~v~f~~~~~~~~~-------~~l~~~L~~~g~~~~~~  314 (367)
                      -.. .+. -+.+....+.++++.++|.++.|+..++. | ..-.+.|..+...+.+       .-+++.|.++|++-+.+
T Consensus       272 P~V-~eR-VkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~  349 (382)
T COG1103         272 PHV-VER-VKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQP  349 (382)
T ss_pred             HHH-HHH-HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcccccc
Confidence            211 222 33455677889999999999988887763 3 4456666554422222       13555666676543332


Q ss_pred             eEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         315 ASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       315 ~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +   -..++.+|+  ...++|+++++++++++++++.
T Consensus       350 G---~Tk~~K~sv--yGl~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         350 G---QTKYFKLSV--YGLSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             C---ceeEEEEEe--ecCCHHHHHHHHHHHHHHHHhc
Confidence            2   234777754  5678999999999999998863

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.85  E-value=2.9e-20  Score=179.76  Aligned_cols=256  Identities=15%  Similarity=0.046  Sum_probs=172.0

Q ss_pred             CCcchhHHHHHHhCC--cceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcC
Q psy3048          37 DQSNSSVEKSAIIGD--VPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN  113 (367)
Q Consensus        37 ~~~H~s~~~~~~~~g--~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~g  113 (367)
                      .-.|.+......+.|  .+++..+++ +++.+|++++++.+.+.++      .|++++.++. |...|+++|.++|++||
T Consensus       176 ~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~p------lvii~g~S~~-~~~~dl~~i~eia~~~g  248 (493)
T PRK13580        176 SGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKP------LILVAGYSAY-PRRVNFAKLREIADEVG  248 (493)
T ss_pred             CCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCC------EEEEeCcccc-CCCcCHHHHHHHHHHcC
Confidence            334555432333333  355556665 4699999999999988763      6777787777 55779999999999999


Q ss_pred             cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCC
Q psy3048         114 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSP  193 (367)
Q Consensus       114 i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  193 (367)
                      ++++||+||+.|.+..+...........+|++++++||+|.+|.| |++++++. ..+. +....+|++++..       
T Consensus       249 A~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~-l~~~-L~~a~P~i~gg~l-------  318 (493)
T PRK13580        249 AVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKE-YADA-VDKGCPLVLGGPL-------  318 (493)
T ss_pred             CEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHH-HHHH-HhhCCCcccCCCc-------
Confidence            999999999998886443221112234679999999999998875 77777543 2322 2222345444321       


Q ss_pred             CchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3048         194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD  273 (367)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~  273 (367)
                                                           ..  ...+...++..+......++.++..+++++|++.|.+. 
T Consensus       319 -------------------------------------~p--~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-  358 (493)
T PRK13580        319 -------------------------------------PH--VMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-  358 (493)
T ss_pred             -------------------------------------cH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-
Confidence                                                 00  01222334444433345677889999999999999987 


Q ss_pred             CeEEeC-CCCceeEEEEEcCCchHH-HHHHHHHhccCcEEEE----EeEECC---eeEEEEEecCC---CCCHHHHHHHH
Q psy3048         274 RFELVC-PPSMGLVCFRLKGDNDLT-NQLYERLMSHKQIYII----KASFQG---RPFLRFVVTSP---ETNQCDVAFAW  341 (367)
Q Consensus       274 g~~~~~-~~~~~~v~f~~~~~~~~~-~~l~~~L~~~g~~~~~----~~~~~~---~~~lRi~~~~~---~~~~edid~li  341 (367)
                      |+.++. ...++++.+.+.+ ...+ ..+.+.|.+.|+ ++.    |+...+   ...||++.+..   ..+++|+++++
T Consensus       359 G~~vv~ggTdshIV~V~lg~-~~~~g~~a~~~L~e~GI-~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~ia  436 (493)
T PRK13580        359 GARLVTGGTDNHLVLIDVTS-FGLTGRQAESALLDAGI-VTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVA  436 (493)
T ss_pred             CCCccCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHCCe-EEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHH
Confidence            888764 2467888888865 3333 366678888884 443    344444   66899965321   34699999999


Q ss_pred             HHHHHHHHHh
Q psy3048         342 NEISHQSSEM  351 (367)
Q Consensus       342 ~~l~~~~~~~  351 (367)
                      +.|.++++..
T Consensus       437 d~l~~~l~~~  446 (493)
T PRK13580        437 ELIVKVLSNT  446 (493)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>KOG2862|consensus

Probab=99.85  E-value=2.8e-19  Score=158.51  Aligned_cols=261  Identities=17%  Similarity=0.143  Sum_probs=187.3

Q ss_pred             HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC-hhhHHHHHhhcCcEEEEeccccc
Q psy3048          46 SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN-LEELGPICQEYNIWLHVDAAYAG  124 (367)
Q Consensus        46 ~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d-l~~I~~l~~~~gi~l~vD~a~~~  124 (367)
                      .++-.|++|..|+.+.+....++.+++++.+++     |.+|.++++.++||+..| ++.+.++||+|+++++||+.-+.
T Consensus       110 ~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~-----p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSl  184 (385)
T KOG2862|consen  110 CARRYGAEVDVVEADIGQAVPLEEITEKLSQHK-----PKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASL  184 (385)
T ss_pred             HHHhhCceeeEEecCcccCccHHHHHHHHHhcC-----CceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhc
Confidence            345578999999888889999999999998876     689999999999999999 88899999999999999986554


Q ss_pred             cc--ccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC----ccccccCCCCCCCCCCCchhh
Q psy3048         125 SA--LLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD----RVYLKHTDAPMNTQSPDYTVM  198 (367)
Q Consensus       125 ~~--~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~----~~yl~~~~~~~~~~~~~~~~~  198 (367)
                      +.  +.+|+     .++   |+.-..++|.+++|+|.+++.+.+.. .+......    ..|+...              
T Consensus       185 ggt~F~mDe-----wgV---DvaytgSQKaL~aP~GLsiisfS~ka-~~~~~~rK~~~~~~yFd~~--------------  241 (385)
T KOG2862|consen  185 GGTEFEMDE-----WGV---DVAYTGSQKALGAPAGLSIISFSDKA-LEAIRDRKTKPVSFYFDIL--------------  241 (385)
T ss_pred             CCccceehh-----hcc---cEEEecchhhcCCCCCcceeecCHHH-HHHHhhccCCceEEEEeHH--------------
Confidence            43  33333     355   99999999999999999997775543 32221111    1222221              


Q ss_pred             hhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy3048         199 NWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELV  278 (367)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~  278 (367)
                       |.++       +|.|...++.   .+++...   .....+.++|..+.++|+++.++++++++++++..|+++ |+++.
T Consensus       242 -~~~~-------~wgc~~e~~~---yhhT~pv---~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~f  306 (385)
T KOG2862|consen  242 -RLGN-------FWGCDGEPRA---YHHTPPV---QLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLF  306 (385)
T ss_pred             -hhcc-------hhccCCcccc---cccCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cccce
Confidence             1111       2344433321   2222221   123677889999999999999999999999999999997 88876


Q ss_pred             CC---CCceeE-EEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         279 CP---PSMGLV-CFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       279 ~~---~~~~~v-~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ..   +..+.+ +...+. ...-+++..++.+++.+.+.++.- -..-++||.+....-+.+.|+..++.|+..+++
T Consensus       307 v~~e~~rlptvttv~vp~-gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  307 VVDEELRLPTVTTVKVPY-GVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             ecChhhccCcceeeecCC-CCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            42   233333 333332 344678999999998766653321 124589998877777899999999999888765

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.85  E-value=4.3e-20  Score=175.12  Aligned_cols=244  Identities=13%  Similarity=0.010  Sum_probs=164.0

Q ss_pred             HHHHHhCCcceEEEecCC----CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEe
Q psy3048          44 EKSAIIGDVPVRQLRSDD----NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVD  119 (367)
Q Consensus        44 ~~~~~~~g~~v~~v~~~~----~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD  119 (367)
                      .+.++..|+ +..+..++    +-.+++++++.  +++      +.+|.++|.+|+||+..|     ++++.++++++||
T Consensus        96 ~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVD  161 (349)
T TIGR01364        96 AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SED------AAYVHYCANETIHGVEFR-----ELPDVKNAPLVAD  161 (349)
T ss_pred             HHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CCC------CCEEEEcCCCCcccEecc-----eecccCCCeEEEE
Confidence            334445677 66666542    23456565552  222      458999999999999876     7777889999999


Q ss_pred             cccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhh
Q psy3048         120 AAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMN  199 (367)
Q Consensus       120 ~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~  199 (367)
                      ++++.+..+.+-.+        .|++++++||+++ |+|+|+++++++. +++.....+.|.            +|    
T Consensus       162 avss~g~~~id~~~--------~d~~~~ssqK~lg-P~Glg~l~~s~~~-~~~~~~~~~~~~------------~~----  215 (349)
T TIGR01364       162 MSSNILSRPIDVSK--------FGLIYAGAQKNIG-PAGLTVVIVRKDL-LGRASRITPSML------------NY----  215 (349)
T ss_pred             ccccccCccCCHHH--------ccEEEEecccccC-CCceEEEEECHHH-HhhcccCCCCcc------------hH----
Confidence            99998877665322        2799999999986 9999999997643 332211111111            01    


Q ss_pred             hhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy3048         200 WLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEKDDRFELV  278 (367)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L~~~~g~~~~  278 (367)
                       ...        ......+++          .+-...+++.++|+.+..+ |++++.+++.++++++++.|++++|+...
T Consensus       216 -~~~--------~~~~~~~~T----------p~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~  276 (349)
T TIGR01364       216 -KIH--------AENDSMYNT----------PPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRN  276 (349)
T ss_pred             -HHH--------HhcCCCCCC----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeecc
Confidence             000        000000011          1112347778889988888 79999999999999999999999887655


Q ss_pred             CC-C--Cc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         279 CP-P--SM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       279 ~~-~--~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .. +  .+ .+++|.+++. ....++.+.+.++|. +..+... ..+.+|+|+ .++++++|||+|+++|+++.++
T Consensus       277 ~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi-~~~~~~~-~~g~vRvS~-~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       277 PVDPRNRSRMNVVFTLGNE-ELEKRFLKEAEERGL-VSLKGHR-SVGGMRASI-YNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             CCCHHHcCCeEEEEecCCh-hHhHHHHHHHHHCCC-cccCCcc-ccCeeEEEC-cCCCCHHHHHHHHHHHHHHHHh
Confidence            32 2  34 5678887652 233567677788886 4432222 235899976 7899999999999999998664

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.85  E-value=2.3e-20  Score=177.83  Aligned_cols=256  Identities=12%  Similarity=-0.005  Sum_probs=168.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHH-HHHHHhhCCCccEEEEEecCCCcccccC-ChhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLT-AVKEDLAKGLIPCCLVATLGTTGTCAFD-NLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~-~l~~~~~~~~~~~~vv~~~~~t~~G~i~-dl~~I~~l  108 (367)
                      +|..+..+|.. .+.++..|.. ..+..+. .+..+..++++ ++++++      .+|.++|.+|+||+.+ ||++|   
T Consensus        96 ~i~~G~fg~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~------~~V~~th~eTstGv~~~~i~~i---  164 (360)
T PRK05355         96 YVDTGSWSKKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDA------AYVHYTSNETIDGTEFHELPDT---  164 (360)
T ss_pred             EEECCHHHHHH-HHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCC------CEEEEccCCCcceEecCccccc---
Confidence            33333333333 3334445654 5555543 45556556655 665433      5899999999999998 77777   


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                         ||++++||++++.+..+.+-.        ..|++++++||+++ |+|+|+++++++. +++.....+.|+....   
T Consensus       165 ---~g~l~vVDavss~g~~~idv~--------~~d~~~~ssqK~lg-P~Glg~l~~s~~~-l~~~~~~~~~~~~~~~---  228 (360)
T PRK05355        165 ---GDVPLVADMSSDILSRPIDVS--------KFGLIYAGAQKNIG-PAGLTIVIVREDL-LGRALPSIPSMLDYKT---  228 (360)
T ss_pred             ---CCCcEEEEcCccccCccCCHH--------HccEEEEecccccc-CCceEEEEECHHH-HhhcccCCChHHHHHH---
Confidence               899999999999887766432        22899999999985 9999999997643 3322110111111100   


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~  267 (367)
                                 +..           ....+++          .+-...+++.++|+.+..+ |++++.+++.++++++++
T Consensus       229 -----------~~~-----------~~~~~~T----------p~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~  276 (360)
T PRK05355        229 -----------HAD-----------NDSMYNT----------PPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYD  276 (360)
T ss_pred             -----------HHh-----------cCCccCC----------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                       000           0000011          1112347788899998888 899999999999999999


Q ss_pred             HhcCCCCeEEeCC--CCc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCP--PSM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       268 ~L~~~~g~~~~~~--~~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      .|++++.+..+.+  ..+ .+++|++++. ....++.+.+.++|.+ +.... ...+.+|+|+ .++||++|||+|+++|
T Consensus       277 ~l~~~~~~~~~~~~~~rs~~v~sf~~~~~-~~~~~~~~~~~~~Gi~-~~~~~-~~~g~vRiS~-~~~nt~eei~~l~~~l  352 (360)
T PRK05355        277 AIDSSDFYRNPVAPEDRSRMNVPFTLADE-ELDKKFLAEAKAAGLV-GLKGH-RSVGGMRASI-YNAMPLEGVQALVDFM  352 (360)
T ss_pred             HHHhCCCcccCCChhhcCCcEEEEEcCCh-HHHHHHHHHHHHCCCc-ccCCC-CccCcEEEEC-CCCCCHHHHHHHHHHH
Confidence            9999863333332  234 5688888652 3335676777888865 33222 2246899976 7899999999999999


Q ss_pred             HHHHHH
Q psy3048         345 SHQSSE  350 (367)
Q Consensus       345 ~~~~~~  350 (367)
                      ++++++
T Consensus       353 ~~~~~~  358 (360)
T PRK05355        353 KEFERR  358 (360)
T ss_pred             HHHHHh
Confidence            998764

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.85  E-value=1.3e-19  Score=172.45  Aligned_cols=262  Identities=14%  Similarity=0.118  Sum_probs=170.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +-.|+++..+|.+...++...|++++.++.++ ++.+|+++|++++++.+      .+|++++   ++|.+.|+++|.++
T Consensus        58 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~---~~G~~~~~~~i~~l  128 (352)
T cd00616          58 GDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPRT------KAIIPVH---LYGNPADMDAIMAI  128 (352)
T ss_pred             CCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcCC------eEEEEEC---CCCCcCCHHHHHHH
Confidence            44688899999999999999999999999976 78999999999986544      3566553   58999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeec--cccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFN--AHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |+++|+++++|++|+.+.......   + + ...|+.+++  .+||+.+| ..|++++++++...+...    +...+..
T Consensus       129 ~~~~~i~li~D~a~~~g~~~~~~~---~-~-~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~----~~~~~~~  198 (352)
T cd00616         129 AKRHGLPVIEDAAQALGATYKGRK---V-G-TFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARL----LRNHGRD  198 (352)
T ss_pred             HHHcCCeEEEECCCCCCCeECCEE---c-c-cCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHH----HHHcCCC
Confidence            999999999999998665432210   0 1 113555555  56999544 346666665444332210    0000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                         .....+                            ........  +....+.+++.....++++++.++.+++++++.
T Consensus       199 ---~~~~~~----------------------------~~~~~~~~--~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~  245 (352)
T cd00616         199 ---RDRFKY----------------------------EHEILGYN--YRLSEIQAAIGLAQLEKLDEIIARRREIAERYK  245 (352)
T ss_pred             ---CCCCcc----------------------------ccceeeec--cCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence               000000                            00000000  011122333333345677888899999999999


Q ss_pred             HHhcCCCCeEEeCCC-----CceeEEEEEcCC-chHHHHHHHHHhccCcEEEE----EeEECC-----------------
Q psy3048         267 DLVEKDDRFELVCPP-----SMGLVCFRLKGD-NDLTNQLYERLMSHKQIYII----KASFQG-----------------  319 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-----~~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~----~~~~~~-----------------  319 (367)
                      +.|++++|++++.++     ...++.|.+++. .....++.+.|.++|+. +.    +.....                 
T Consensus       246 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  324 (352)
T cd00616         246 ELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIE-TRVHYPPLHHQPPYKKLLGYPPGDLPNAE  324 (352)
T ss_pred             HHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCC-eeeecCccccCHhhhhccCCCcCCChHHH
Confidence            999999999987643     235677777531 23356889999888852 22    111100                 


Q ss_pred             ---eeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         320 ---RPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       320 ---~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                         ...+|++ .++++|++||++++++|+
T Consensus       325 ~~~~~~l~l~-~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         325 DLAERVLSLP-LHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHhCeEEcc-CCCCCCHHHHHHHHHHhC
Confidence               2589994 588999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.84  E-value=8.2e-19  Score=169.66  Aligned_cols=262  Identities=14%  Similarity=0.091  Sum_probs=172.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|.+...+++..+.+...++     .+|+++|++++++..+.+..+.+|++.+..|++|.+.|+++|+++|+
T Consensus       123 d~vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~  197 (393)
T TIGR01822       123 DAIISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLAD  197 (393)
T ss_pred             CEEEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHH
Confidence            4677789999999999888887775543     36999999999875332223467888888899999999999999999


Q ss_pred             hcCcEEEEecccccccccCh-hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLP-EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +||+++++|++|+.+.+... .......++ ..+|+++.+.||++.++ ..|+++.+ +............+......  
T Consensus       198 ~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~~~~-~~~~~~l~~~~~~~~~~~~~--  273 (393)
T TIGR01822       198 KYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA-SGGFTTAR-KEVVELLRQRSRPYLFSNSL--  273 (393)
T ss_pred             HcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC-CcEEEEeC-HHHHHHHHHhCccceecCCC--
Confidence            99999999999975543211 000001122 24699999999998765 55877653 33332211111111111000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                                                                 ......++..+++.+  +..++..++..++.+++.+.
T Consensus       274 -------------------------------------------~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~  308 (393)
T TIGR01822       274 -------------------------------------------PPAVVGASIKVLEML--EASNELRDRLWANTRYFRER  308 (393)
T ss_pred             -------------------------------------------CHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHH
Confidence                                                       000112233344332  23566778889999999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      |+++ |+++. ++..+.+.+.+.+ .....++.+.|.++|+ ++.+..+    .+...+|+++ +.+++++||++++++|
T Consensus       309 L~~~-g~~~~-~~~~~~~~i~~~~-~~~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~iRis~-~~~~t~edi~~~~~~l  383 (393)
T TIGR01822       309 MEAA-GFDIK-PADHPIIPVMLYD-AVLAQRFARRLLEEGI-YVTGFFYPVVPKGQARIRVQI-SAAHTEEQLDRAVEAF  383 (393)
T ss_pred             HHHc-CCCCC-CCCCCEEEEEeCC-HHHHHHHHHHHHHCCe-eEeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHH
Confidence            9886 77764 3334555555543 2345789999998884 4443221    2345799976 5778899999999999


Q ss_pred             HHHHHHh
Q psy3048         345 SHQSSEM  351 (367)
Q Consensus       345 ~~~~~~~  351 (367)
                      +++.+++
T Consensus       384 ~~~~~~~  390 (393)
T TIGR01822       384 TRIGREL  390 (393)
T ss_pred             HHHHHHh
Confidence            9987754

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK07179 hypothetical protein; Provisional

Probab=99.84  E-value=7.6e-19  Score=170.67  Aligned_cols=259  Identities=12%  Similarity=0.057  Sum_probs=171.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++...|.+...++...|++++.++.     .|+++|++++++..     +.+|++.+++|++|.+.|+++|.++|+
T Consensus       139 ~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~-----~~lV~v~~v~n~tG~i~pl~~I~~l~~  208 (407)
T PRK07179        139 TPVYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIERHG-----PGIIVVDSVYSTTGTIAPLADIVDIAE  208 (407)
T ss_pred             CEEEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCccccHHHHHHHHH
Confidence            45777899999999998888888766643     49999999997632     357888889999999999999999999


Q ss_pred             hcCcEEEEecccccccccCh-hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLP-EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +||+++++|++|+.+..... ..-....++ ..+|+++.+.||+++.  ++|+++.+. +..........++......  
T Consensus       209 ~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~--~~G~l~~~~-~~~~~~~~~~~~~~~~~t~--  283 (407)
T PRK07179        209 EFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG--RAGIITCPR-ELAEYVPFVSYPAIFSSTL--  283 (407)
T ss_pred             HcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc--cCeEEEeCH-HHHHHHHHhCcCeeeCCCC--
Confidence            99999999999986533111 000001122 2469999999999974  477877643 3222111111111111000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                                                                . .....++.++++.+.  ...+..++..++++++++.
T Consensus       284 ------------------------------------------~-~~~~aa~~aal~~~~--~~~~~~~~l~~~~~~l~~~  318 (407)
T PRK07179        284 ------------------------------------------L-PHEIAGLEATLEVIE--SADDRRARLHANARFLREG  318 (407)
T ss_pred             ------------------------------------------C-HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence                                                      0 001122333444331  2245677889999999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEE---EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIY---IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~---~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      |+++ |+++..  ..+++.+.+.. ......+.+.|.++|++.   +.+....+..++|+++ +..+|++|+++++++|+
T Consensus       319 L~~~-g~~v~~--~~~i~~l~~~~-~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~-~~~~t~edi~~~~~~l~  393 (407)
T PRK07179        319 LSEL-GYNIRS--ESQIIALETGS-ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSL-NADLTASDLDRVLEVCR  393 (407)
T ss_pred             HHHc-CCCCCC--CCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHH
Confidence            9987 777653  34666666543 234567888898888541   1111222357999976 56788999999999999


Q ss_pred             HHHHHhhCC
Q psy3048         346 HQSSEMNLP  354 (367)
Q Consensus       346 ~~~~~~~~~  354 (367)
                      +++++....
T Consensus       394 ~~~~~~~~~  402 (407)
T PRK07179        394 EARDEVDLW  402 (407)
T ss_pred             HHHHhhCCC
Confidence            998876544

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.83  E-value=9.5e-20  Score=173.69  Aligned_cols=257  Identities=12%  Similarity=0.006  Sum_probs=163.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCc-C-HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVL-R-GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~-d-~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .+|++....|.+ .+.++..|++++.+++++++.. + ++..+..+++++      .+|+++|.+|.+|...     .++
T Consensus        91 ~~i~~g~~~~~~-~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~lV~~~h~~t~tG~~~-----~~i  158 (355)
T cd00611          91 DYVVTGAWSAKA-AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDA------AYVHYCSNETIHGVEF-----DEV  158 (355)
T ss_pred             EEEECCHHHHHH-HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCC------CEEEEeCCcccccEEc-----cee
Confidence            344444444433 2344556889999988654333 4 233333344444      4899999999999972     245


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ++.||++++||++++.+..+.+-.+        .|+..+++||++ +|+|+|+++++.+. +.+.....+.+.       
T Consensus       159 ~~~~g~~~~VDa~qs~g~~~idv~~--------~~~~~ss~~K~l-GP~G~g~l~~~~~~-~~~~~~~~~~~~-------  221 (355)
T cd00611         159 PDTGGVPLVADMSSNILSRPIDVSK--------FGVIYAGAQKNL-GPAGVTVVIVRKDL-LGKARKITPSML-------  221 (355)
T ss_pred             cccCCCeEEEEccccccCCCCCHHH--------hCEEEeeccccc-CCCceEEEEECHHH-HhhcccCCCCcc-------
Confidence            5669999999999999888765322        255556699987 59999999997543 322211111111       


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~  267 (367)
                           ++     ..    .    .......++          .+-...+++.++++.+..+ |++++.++++++++++++
T Consensus       222 -----~~-----~~----~----~~~~~~~~T----------pn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~  273 (355)
T cd00611         222 -----NY-----KT----H----ADNNSLYNT----------PPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYD  273 (355)
T ss_pred             -----cH-----HH----H----HhcCCCCCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                 00     00    0    000000111          1112347788899998888 799999999999999999


Q ss_pred             HhcCCCCeE-EeCC--CCc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFE-LVCP--PSM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~-~~~~--~~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++||+. ...+  ... .+++|++++. ....++.+.+.+.|.+ . +..++..+.+|+|+ .++||++|||+|+++
T Consensus       274 ~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~-~l~~~~~~~~~r~G~~-~-~~~~~~~g~vR~S~-~~~nt~edi~~l~~a  349 (355)
T cd00611         274 TIDNSNGFYRGPVDKRARSRMNVPFRLGKE-ELEKEFLKEAEAAGMI-G-LKGHRSVGGIRASI-YNALSLEGVQALADF  349 (355)
T ss_pred             HHHhCccccccCCCHHHcCceEEEEEcCCh-hhhHHHHHHHHHCCCc-c-cCCCcccCeEEEEc-cCCCCHHHHHHHHHH
Confidence            999998863 2112  134 4588887652 2334555666778854 3 22222236899976 789999999999999


Q ss_pred             HHHHH
Q psy3048         344 ISHQS  348 (367)
Q Consensus       344 l~~~~  348 (367)
                      |+++.
T Consensus       350 l~~~~  354 (355)
T cd00611         350 MKEFQ  354 (355)
T ss_pred             HHHHh
Confidence            99863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.83  E-value=1.8e-18  Score=165.97  Aligned_cols=260  Identities=13%  Similarity=0.045  Sum_probs=166.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|+++...|.|+..+++......+.++     ..|+++|++++++..+......+|+++++++++|.+.|+++|.++|
T Consensus        95 ~d~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~  169 (370)
T PRK05937         95 TDYVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALS  169 (370)
T ss_pred             CCEEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHH
Confidence            45777789999999999887543333333     3589999999986432222235677889999999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +++|++++||++|+.+.+..+-... ...+....+....+.+|.++ |.|+|+++.++  ..........++.+...   
T Consensus       170 ~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~~vl~~~~--~~~~~~~~~~~~~~s~~---  243 (370)
T PRK05937        170 KKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGAALLSSSE--VKQDLMLNSPPLRYSTG---  243 (370)
T ss_pred             HHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCceEEEcCHH--HHHHHHHhCCCCeecCC---
Confidence            9999999999999876554321000 01122222455667779775 67877766532  11111111112221110   


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                                                                .......++.++++.+...+ +...++..++.+++.+.
T Consensus       244 ------------------------------------------~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~  280 (370)
T PRK05937        244 ------------------------------------------LPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQK  280 (370)
T ss_pred             ------------------------------------------CCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHh
Confidence                                                      00112244556666655555 45667888999999988


Q ss_pred             hcCC-CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         269 VEKD-DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       269 L~~~-~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      |... ++.         .+.+.+++  ....++.+.|.++|+ ++....+...+++|+++ +.++|++|||+++++|+++
T Consensus       281 l~~~~~~~---------~~~i~~~~--~~~~~~~~~L~~~gi-~v~~~~~~~~~~iRis~-~~~~t~edid~l~~~L~~~  347 (370)
T PRK05937        281 FSSAAPGC---------VQPIFLPG--ISEQELYSKLVETGI-RVGVVCFPTGPFLRVNL-HAFNTEDEVDILVSVLATY  347 (370)
T ss_pred             cCCCCCCC---------EEEEEeCC--hhHHHHHHHHHHCCe-eEEeeCCCCCCEEEEEc-CCCCCHHHHHHHHHHHHHH
Confidence            8653 111         12244443  234678888888884 44432223345899976 7889999999999999999


Q ss_pred             HHHhhCCCC
Q psy3048         348 SSEMNLPRG  356 (367)
Q Consensus       348 ~~~~~~~~~  356 (367)
                      ++++.++..
T Consensus       348 ~~~~~~~~~  356 (370)
T PRK05937        348 LEKYQKNVV  356 (370)
T ss_pred             HHHhCCCcc
Confidence            998876654

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.83  E-value=5.2e-19  Score=167.50  Aligned_cols=259  Identities=14%  Similarity=0.043  Sum_probs=170.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCH--HHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH-
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRG--DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG-  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~--~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~-  106 (367)
                      .-+|++++.+|.++..+++..|.+++.++.++++..+.  +.+++..++.      +.+|+++++++++|.+.|++++. 
T Consensus        83 g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~v~i~~~~~~tG~~~~~~~l~~  156 (350)
T cd00609          83 GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK------TKLLYLNNPNNPTGAVLSEEELEE  156 (350)
T ss_pred             CCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc------ceEEEEECCCCCCCcccCHHHHHH
Confidence            34677889999999999999999999999987776665  5666554443      35888888999999998766555 


Q ss_pred             --HHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccc
Q psy3048         107 --PICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       107 --~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                        ++|+++|+++++|+||+++........ ....+...+|+++.+.||+++ .+.++|+++.+++....... ....+..
T Consensus       157 l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~-~~~~~~~  235 (350)
T cd00609         157 LAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLK-KLLPYTT  235 (350)
T ss_pred             HHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHH-HHHHhcc
Confidence              899999999999999987654322110 000112235899999999998 55678888886533333211 0000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                                                    ...+......+..+++... +++++..++..+++
T Consensus       236 ----------------------------------------------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  268 (350)
T cd00609         236 ----------------------------------------------SGPSTLSQAAAAAALDDGE-EHLEELRERYRRRR  268 (350)
T ss_pred             ----------------------------------------------cCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHH
Confidence                                                          0001112233444444332 67888888999999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +++.+.|++++...+..++....+++.+... ...+.+.+.|.+.|+.......+.  +..++|++++..   ++|++++
T Consensus       269 ~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~---~~~i~~~  344 (350)
T cd00609         269 DALLEALKELGPLVVVKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP---EEELEEA  344 (350)
T ss_pred             HHHHHHHHhcCCccccCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC---HHHHHHH
Confidence            9999999998655433344455666666542 224455666666674332222222  567999977543   9999999


Q ss_pred             HHHHHH
Q psy3048         341 WNEISH  346 (367)
Q Consensus       341 i~~l~~  346 (367)
                      +++|++
T Consensus       345 ~~al~~  350 (350)
T cd00609         345 LERLAE  350 (350)
T ss_pred             HHHhhC
Confidence            999863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>KOG1360|consensus

Probab=99.83  E-value=7.4e-19  Score=160.36  Aligned_cols=269  Identities=16%  Similarity=0.152  Sum_probs=198.7

Q ss_pred             cccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          26 DIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        26 ~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .+.|+.+||.++.+|.|+..+++..+++-..+..+     |+++|+++++...+  ..|++|.+....++.|.+.||++|
T Consensus       253 k~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHN-----D~~hL~~lL~~~~~--svPKivAFEtVhSM~Gavcpleel  325 (570)
T KOG1360|consen  253 KKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHN-----DLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCPLEEL  325 (570)
T ss_pred             HHCCCcEEeccccchHHHHHHhhhcCCcceeeccC-----CHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCCHHHH
Confidence            35689999999999999999999999877777766     99999999987654  358899999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccCh-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecchhhhhh-ccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT-FFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~-~~~~~~yl~  182 (367)
                      ++++|+||+..++|+.|+.+.+-.. ..-..-.| +.++|+++...-|.|+.    -.-|+.....+... .+..++|++
T Consensus       326 cDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~~LvDmiRSyAaGFIF  401 (570)
T KOG1360|consen  326 CDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATRKLVDMIRSYAAGFIF  401 (570)
T ss_pred             HHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhhhHHHHHHHhcCceEE
Confidence            9999999999999999988766321 00000123 36789999999998864    23344333323333 366677776


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISL  261 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~l  261 (367)
                      ...-      +..                                      . ......+.+.+ ..+| ....+.++..
T Consensus       402 TTSL------PP~--------------------------------------v-l~GAleaVr~lk~~eg-~~lR~~hqrn  435 (570)
T KOG1360|consen  402 TTSL------PPM--------------------------------------V-LAGALEAVRILKSEEG-RVLRRQHQRN  435 (570)
T ss_pred             ecCC------ChH--------------------------------------H-HHhHHHHHHHHhhhhh-HHHHHHHHHH
Confidence            5421      110                                      1 12223344443 3445 4445667888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeEECCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+|+++.|.++ |+.++.. .+.++-.++.+ ...+.++.+-|+.+..+|+.    |+...|...+||++ .++.|++.+
T Consensus       436 v~~~kq~l~~~-GiPVi~~-pSHIiPv~vgd-a~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaP-TP~HT~~mm  511 (570)
T KOG1360|consen  436 VKYVKQLLMEL-GIPVIPN-PSHIIPVRVGD-AALAKQASDILISKHNIYVQAINYPTVARGTERLRIAP-TPHHTPQMM  511 (570)
T ss_pred             HHHHHHHHHHc-CCcccCC-CcceeeeeccC-HHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCC-CCCCCHHHH
Confidence            99999999997 8888754 46777777754 56778999999998888875    56667888999976 566689999


Q ss_pred             HHHHHHHHHHHHHhhCCC
Q psy3048         338 AFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       338 d~li~~l~~~~~~~~~~~  355 (367)
                      +.|++++..+.+++.-..
T Consensus       512 ~~lv~~l~~vw~~v~l~~  529 (570)
T KOG1360|consen  512 NILVNALLDVWNEVGLPR  529 (570)
T ss_pred             HHHHHHHHHHHHHcCCcc
Confidence            999999999999876554

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.82  E-value=3.1e-18  Score=163.61  Aligned_cols=250  Identities=12%  Similarity=0.043  Sum_probs=159.8

Q ss_pred             EEEecCCcchhH-----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          32 VAYASDQSNSSV-----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~-----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .|+++. .|+..     ..++...|+++++++.  ++.+|++++++++.++++     .++.++++++++|.+.|+++|+
T Consensus       101 eVi~~~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~  172 (363)
T TIGR01437       101 EVVLPK-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAA  172 (363)
T ss_pred             eEEEEC-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHH
Confidence            355554 55543     4566778999999986  356999999999998874     3444667778899999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||+||+++++|+||+...   ....    .. .+|++++++||++.+|. .|+++. +++.+....    ........
T Consensus       173 ~~a~~~gi~vivD~a~~~~~---~~~~----~~-g~D~~~~S~~K~l~gp~-~G~l~~-~~~~i~~~~----~~~~~~~~  238 (363)
T TIGR01437       173 QVAQEHNLPLIVDAAAEEDL---QKYY----RL-GADLVIYSGAKAIEGPT-SGLVLG-KKKYIEWVK----LQSKGIGR  238 (363)
T ss_pred             HHHHHcCCeEEEECCCCCch---HHHH----Hc-CCCEEEEeCCcccCCCc-eEEEEE-cHHHHHHHH----hccCCCcc
Confidence            99999999999999997211   1100    11 35999999999999887 677665 333333210    00000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                             .+                            +..+      ...+++.+++..+...+.+.+. +..+.++++.
T Consensus       239 -------~~----------------------------~~~~------~~~~gl~aAl~~~~~~~~~~~~-~~~~~~~~l~  276 (363)
T TIGR01437       239 -------AM----------------------------KVGK------ENILGLTAALEQYLSTGKESGA-EMVAKLTPFI  276 (363)
T ss_pred             -------ee----------------------------ccCH------HHHHHHHHHHHHHHccCcccHH-HHHHHHHHHH
Confidence                   00                            0000      1134555666655443433333 3445677899


Q ss_pred             HHhcCCCCeEEeCCC-------CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP-------SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      ++|++++|+++..++       ....+.|.....+....++.+.|.+.+.-..........+.+|+.+.  .++++|+++
T Consensus       277 ~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~--~~~~~e~~~  354 (363)
T TIGR01437       277 EALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPR--SVTGGQLDI  354 (363)
T ss_pred             HHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEee--cCCHHHHHH
Confidence            999999999887421       12345555422223467899999876632222222334557787653  367999999


Q ss_pred             HHHHHHHH
Q psy3048         340 AWNEISHQ  347 (367)
Q Consensus       340 li~~l~~~  347 (367)
                      ++++|+++
T Consensus       355 ~~~~l~~~  362 (363)
T TIGR01437       355 IVERIREI  362 (363)
T ss_pred             HHHHHHHh
Confidence            99999876

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.2e-18  Score=155.40  Aligned_cols=246  Identities=18%  Similarity=0.207  Sum_probs=182.1

Q ss_pred             CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          62 NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        62 ~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      .+.+.|+++++++++++      .+|++++.+..||+..|+.+|.+++|++|+++..|-||+++.++.+...      ..
T Consensus       151 ~~~~~P~~~~~~~~dd~------AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~------~g  218 (407)
T COG3844         151 EGVIAPRALEEAITDDV------AVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHA------AG  218 (407)
T ss_pred             eeeeChHHHHHhhccce------EEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecc------cC
Confidence            35678889999999987      4899999999999999999999999999999999999999999876543      34


Q ss_pred             cceeeeccccccccCCcc-eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDC-SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      +|+.++++||+|++.+|. +++|+.+ ...+........+..+...        |           ..+..++  ..+|.
T Consensus       219 aDfaigcsyKYLNgGPGapa~l~v~~-~h~e~~~~~lsgW~gha~p--------f-----------~m~~~y~--p~~ga  276 (407)
T COG3844         219 ADFAIGCSYKYLNGGPGAPAGLFVAP-RHRERSWPPLSGWWGHARP--------F-----------AMEEVYA--PGPGA  276 (407)
T ss_pred             CCeeeeeeceeccCCCCCceeEEecc-ccccccccccccccCCCCc--------c-----------hhhhccC--cCccc
Confidence            599999999999987775 4555543 3333333333344432221        0           0011111  11221


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-C--CeEEeCCC----CceeEEEEEcCC
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-D--RFELVCPP----SMGLVCFRLKGD  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~--g~~~~~~~----~~~~v~f~~~~~  293 (367)
                         ..|.-....-.++.++-.+|..+..-++.+..++...++.|+.+.++.. +  ++++..|.    .-..|+|..+. 
T Consensus       277 ---~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~-  352 (407)
T COG3844         277 ---RRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH-  352 (407)
T ss_pred             ---cceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc-
Confidence               3333333333455666677888888889999999999999999999764 3  67777663    45677887654 


Q ss_pred             chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                         ..++++.|+++|++    +.++.+..+|+.++..|++-+||-..++.|+++++...
T Consensus       353 ---~~~V~qaLi~rGVi----gD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a  404 (407)
T COG3844         353 ---GYQVMQALIDRGVI----GDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLA  404 (407)
T ss_pred             ---HHHHHHHHHHcCcc----ccccCCCeeeecCccceechhHHHHHHHHHHHHHHhhc
Confidence               57899999999954    56677889999988889999999999999999988653

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=4.5e-18  Score=159.69  Aligned_cols=271  Identities=13%  Similarity=0.110  Sum_probs=193.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .=.|+++..++.+..+++...|+++++|++| +.+.||++.||++|.+.+|      .|+..|   ..|...|+++|.+|
T Consensus        74 GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tK------AIipVh---l~G~~~dm~~i~~l  144 (374)
T COG0399          74 GDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTK------AIIPVH---LAGQPCDMDAIMAL  144 (374)
T ss_pred             CCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCe------EEEEeh---hccCCCCHHHHHHH
Confidence            3477888999999999999999999999998 4599999999999999875      555553   47999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |++||++++.|+||+.|...-++.   .-.++.+-+++|.++|.+.+. ..|++++++++..++..    .+...+..  
T Consensus       145 a~~~~l~vIEDaAqa~Ga~y~gk~---vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~----~lr~hG~~--  214 (374)
T COG0399         145 AKRHGLPVIEDAAQAHGATYKGKK---VGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKAR----SLRNHGLS--  214 (374)
T ss_pred             HHHcCCeEEEEcchhccCeecCcc---cccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHH----HHHHhCcC--
Confidence            999999999999998776543221   122455688999999999987 77888888876655432    11111111  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                        ....+                            +.+....|-+++...+.+++...+.+.++++.++.+++++++.+.
T Consensus       215 --~~~~~----------------------------~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~  264 (374)
T COG0399         215 --RDAVF----------------------------KYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEA  264 (374)
T ss_pred             --CCccc----------------------------cceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000                            122333445566777888888888899999999999999999999


Q ss_pred             hcCCCCeEEeCCCC-----ceeEEEEEcCCchHHHHHHHHHhccCcE---EEEEeEEC--------------------Ce
Q psy3048         269 VEKDDRFELVCPPS-----MGLVCFRLKGDNDLTNQLYERLMSHKQI---YIIKASFQ--------------------GR  320 (367)
Q Consensus       269 L~~~~g~~~~~~~~-----~~~v~f~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~--------------------~~  320 (367)
                      |++++++.+..++.     ......+++.....-+++.+.|.++|+.   +..|....                    ..
T Consensus       265 l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~  344 (374)
T COG0399         265 LKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSE  344 (374)
T ss_pred             hhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhh
Confidence            99998766544331     2233334443212335788888888532   22221000                    12


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ..+.+ +.++..+++|+++++++|++++.+
T Consensus       345 r~l~L-P~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         345 RILSL-PLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CeEEc-cCCCCCCHHHHHHHHHHHHHHhcc
Confidence            35677 678999999999999999998653

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.81  E-value=6.4e-18  Score=160.59  Aligned_cols=257  Identities=12%  Similarity=0.003  Sum_probs=168.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++..|.+...+++..|++++.++.     +|++++++++++.. +...+.++++++++|++|...|+++|+++|+
T Consensus        86 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~  159 (349)
T cd06454          86 DLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAK  159 (349)
T ss_pred             CEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHH
Confidence            35777889999999888889999988753     48899999987643 1123467888888999999999999999999


Q ss_pred             hcCcEEEEecccccccccCh-hhhhhhC-CCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLP-EYAHLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~-~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ++|+++++|++|+.+.+... ....... .....|+++.++||+++. +| |+++.+ +..+.........+....    
T Consensus       160 ~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~~-~~~~~~~~~~~~~~~~~~----  232 (349)
T cd06454         160 KYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAGS-KELIDYLRSYARGFIFST----  232 (349)
T ss_pred             HcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-CEEECC-HHHHHHHHHhchhhhccC----
Confidence            99999999999975544211 0000000 122459999999999986 34 555543 333322111111111000    


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                         ..                                      .......+.++++....  .++..++..++++++.+.
T Consensus       233 ---~~--------------------------------------~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~  269 (349)
T cd06454         233 ---SL--------------------------------------PPAVAAAALAALEVLQG--GPERRERLQENVRYLRRG  269 (349)
T ss_pred             ---CC--------------------------------------CHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence               00                                      00112344445554322  466778889999999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      |.++ |+++..++......+.... .....++.+.|.++|+ .+.+...    .+..++|+++ +.+++++|+++++++|
T Consensus       270 l~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gI-~~~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l  345 (349)
T cd06454         270 LKEL-GFPVGGSPSHIIPPLIGDD-PAKAVAFSDALLERGI-YVQAIRYPTVPRGTARLRISL-SAAHTKEDIDRLLEAL  345 (349)
T ss_pred             HHhc-CCcccCCCCCcEEEEeCCC-hHHHHHHHHHHHhCCc-eEEEecCCccCCCCCeEEEEE-eCCCCHHHHHHHHHHH
Confidence            9886 7776655444444443332 2346789999998875 4433221    1246899976 6778999999999999


Q ss_pred             HHH
Q psy3048         345 SHQ  347 (367)
Q Consensus       345 ~~~  347 (367)
                      +++
T Consensus       346 ~~~  348 (349)
T cd06454         346 KEV  348 (349)
T ss_pred             HHh
Confidence            875

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.81  E-value=9e-19  Score=167.13  Aligned_cols=226  Identities=12%  Similarity=0.032  Sum_probs=149.1

Q ss_pred             cEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEE
Q psy3048          84 PCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMW  163 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~  163 (367)
                      +.+|+++|.+|.+|.+.|+++|   +|++|++++||++++.+..+.+-.        .+|++++++||+++.|+|.++++
T Consensus       129 ~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~--------~~D~~~~s~~K~lg~~~Gl~~~~  197 (361)
T TIGR01366       129 VDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA--------ETDVYYFAPQKNFASDGGLWLAI  197 (361)
T ss_pred             CCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHH--------HCCEEEEEchhhcCCCCceEEEE
Confidence            3589999999999999999998   589999999999999988766531        25999999999999998888877


Q ss_pred             EecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHH
Q psy3048         164 VKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMT  242 (367)
Q Consensus       164 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  242 (367)
                      ++++ .+++...    ....+..     .+.|  .+|       +..... ....+        ...+.. ...+++..+
T Consensus       198 ~s~~-~~~~~~~----~~~~~~~-----~p~~--~d~-------~~~~~~-~~~~~--------t~~tp~i~~i~~l~~a  249 (361)
T TIGR01366       198 MSPA-ALERIEA----IAASGRW-----VPEF--LSL-------PTAVDN-SLKNQ--------TYNTPAIATLALLAEQ  249 (361)
T ss_pred             ECHH-HHhhhhc----ccCCCCC-----Cchh--hhH-------HHHHhc-cccCC--------CCCCchHHHHHHHHHH
Confidence            7653 3332211    0001000     0001  000       000000 00000        001111 123477788


Q ss_pred             HHHhhHH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-C--Ccee-EEEEEcCCchHHHHHHHHHhccCcEEEEEeE-
Q psy3048         243 LRSYGLK-GLQAYLRKHISLAKKFADLVEKDDRFELVCP-P--SMGL-VCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-  316 (367)
Q Consensus       243 l~~~~~~-g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~--~~~~-v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-  316 (367)
                      ++.+..+ |++.+.+++.++++++++.|.++++++++.+ +  .+.. .++.+.. +....++.+.|.++|+. +.+.. 
T Consensus       250 l~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~-g~~~~~v~~~L~~~gI~-i~~~~~  327 (361)
T TIGR01366       250 IDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVD-DIDAATVAKILRANGIV-DTEPYR  327 (361)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCC-ccCHHHHHHHHHHCCCe-eccCcc
Confidence            8888777 6999999999999999999999976776642 2  1222 2333332 34467888899888754 33221 


Q ss_pred             ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 ~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .-+...+|++. +.++|.+||++++++|+++++++
T Consensus       328 ~l~~~~vRis~-~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       328 KLGRNQLRVAM-FPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             ccCCCcEEEEc-CCCCCHHHHHHHHHHHHHHHhhC
Confidence            11245899965 67999999999999999987753

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.80  E-value=2.7e-18  Score=156.61  Aligned_cols=259  Identities=20%  Similarity=0.198  Sum_probs=169.5

Q ss_pred             cCceEEEecCCcchhHHHHH--Hh-CCcceEEEecCCCCCcCHHHHHHHHHHHh-hCCCccEEEEEecCCCcccccC---
Q psy3048          28 KSRLVAYASDQSNSSVEKSA--II-GDVPVRQLRSDDNGVLRGDALLTAVKEDL-AKGLIPCCLVATLGTTGTCAFD---  100 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~--~~-~g~~v~~v~~~~~~~~d~~~L~~~l~~~~-~~~~~~~~vv~~~~~t~~G~i~---  100 (367)
                      .+.-.|+|.+.+|...+++.  .+ .+...+.+....+|.++++++++++.+.- .+...|.++..+.. |..|.+.   
T Consensus        72 ~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~GtVy~l~  150 (342)
T COG2008          72 QPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGGTVYPLD  150 (342)
T ss_pred             CCCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCceecCHH
Confidence            45678999999999988863  33 34555555445789999999999998632 34455666666654 4779985   


Q ss_pred             ChhhHHHHHhhcCcEEEEeccccc---ccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         101 NLEELGPICQEYNIWLHVDAAYAG---SALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       101 dl~~I~~l~~~~gi~l~vD~a~~~---~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      .|++|.++||++|+++|+|||--+   ..+. +..+...+   .+|++++++.|.++.|  .|.+++.+.+..++.    
T Consensus       151 el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~---~~D~v~~~~tK~g~~~--~gAiv~gn~~~~~~a----  220 (342)
T COG2008         151 ELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIKS---YVDSVSFCLTKGGGAP--VGAIVFGNRDFAKRA----  220 (342)
T ss_pred             HHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHHh---hCCEEEEecccCCcce--eeeEEEcCHHHHHHH----
Confidence            456677789999999999997432   2222 22333333   4599999999999987  456666666655432    


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                       .|.....                                 |++      + ...++.+.+.   +-.+...-+....++
T Consensus       221 -~~~rK~~---------------------------------Ggl------~-~k~r~laA~~---~~~l~~~~~~~~~~H  256 (342)
T COG2008         221 -RRWRKRA---------------------------------GGL------M-RKARFLAAQG---LYALEDDVWRLAADH  256 (342)
T ss_pred             -HHHHHHh---------------------------------ccc------H-hhhhHHHHHH---HHHHhccHHHHHHHH
Confidence             1111110                                 000      0 0011222222   222333345666677


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe-eEEEEEecCCCCCHHH
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR-PFLRFVVTSPETNQCD  336 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-~~lRi~~~~~~~~~ed  336 (367)
                      ..+++++|.+.+...+|+++..|++.|+|.++++.      ...+.|...+..+..+...... ..+|+ ++++-++++|
T Consensus       257 an~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~------~~i~~l~~~~~~~~~~~~~~~~~~~vRf-vts~a~~~ed  329 (342)
T COG2008         257 ANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPE------SAIEALRLAGALFYRGVLIGAHGEIVRF-VTSWATSEED  329 (342)
T ss_pred             HHHHHHHHHHhhhhcCCceeccCCcccEEEEECCh------HHHHHHHhhchhheeeeeccCCCceEEE-EeeccCCHHH
Confidence            88899999999998899999988999999998863      2225555555433221111222 47999 6789999999


Q ss_pred             HHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQS  348 (367)
Q Consensus       337 id~li~~l~~~~  348 (367)
                      |++++..++++.
T Consensus       330 v~~~~~~~~~~~  341 (342)
T COG2008         330 VDELVAAIKALL  341 (342)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998763

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.80  E-value=1.1e-18  Score=165.25  Aligned_cols=255  Identities=17%  Similarity=0.126  Sum_probs=161.3

Q ss_pred             ceEEEecCCcchhHHH---HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC-CCccEEEEEecCCCcccc---cCCh
Q psy3048          30 RLVAYASDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-GLIPCCLVATLGTTGTCA---FDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~---~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~-~~~~~~vv~~~~~t~~G~---i~dl  102 (367)
                      .-.|++++.+|.+...   .+...|++++.++.+. +.+|+++|++++++..+. ...+.+|++++++|+ |.   .+++
T Consensus        71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l  148 (338)
T cd06502          71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL  148 (338)
T ss_pred             CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence            3456678899988654   3455899999999854 789999999999753110 112468888888885 54   3678


Q ss_pred             hhHHHHHhhcCcEEEEecccccccc--cChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~--~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      ++|+++|++||+++++|+||..+..  .........   ..+|+++.++|||++.|.  |.+++.+++...........+
T Consensus       149 ~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~  223 (338)
T cd06502         149 KAISALAKENGLPLHLDGARLANAAAALGVALKTYK---SGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQA  223 (338)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHH---hcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHh
Confidence            8899999999999999999853321  100111111   245999999999998774  334444444333221100000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                        ..         .+                                     ....+...+++..+...++.++.++..+
T Consensus       224 --~~---------~~-------------------------------------~~~~~~~~a~~~~L~~~~~~~~~~~~~~  255 (338)
T cd06502         224 --GG---------GM-------------------------------------RQSGFLAAAGLAALENDLWLRRLRHDHE  255 (338)
T ss_pred             --CC---------Ch-------------------------------------hhHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence              00         00                                     0111223333444444456777788889


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh---ccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM---SHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~---~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      +++++.+.|+++ |+.+ .++..+++.++++.......++.+.+.   ++|.. +.+.   +..++|+++ +.+++++|+
T Consensus       256 ~~~~l~~~L~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~-~~~~---~~~~lRi~~-~~~~~~~~i  328 (338)
T cd06502         256 MARRLAEALEEL-GGLE-SEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVL-FYAW---GEGGVRFVT-HWDTTEEDV  328 (338)
T ss_pred             HHHHHHHHHHhc-CCCc-ccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEE-EEec---CCCeEEEEe-ecCCCHHHH
Confidence            999999999987 5543 356678888877543333445555554   56643 3222   226899976 678889999


Q ss_pred             HHHHHHHHH
Q psy3048         338 AFAWNEISH  346 (367)
Q Consensus       338 d~li~~l~~  346 (367)
                      +++++++++
T Consensus       329 ~~~~~~l~~  337 (338)
T cd06502         329 DELLSALKA  337 (338)
T ss_pred             HHHHHHHhc
Confidence            999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02483 serine palmitoyltransferase

Probab=99.80  E-value=2.4e-17  Score=163.05  Aligned_cols=271  Identities=13%  Similarity=0.040  Sum_probs=173.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC-------CCccEEEEEecCCCcccccCCh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-------GLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~-------~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      .-.|++++.+|.+...+++..|++++.++.+     |+++|++.+++....       ....++|++....+++|.+.|+
T Consensus       185 Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l  259 (489)
T PLN02483        185 GGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKL  259 (489)
T ss_pred             CCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCH
Confidence            3467789999999999999999999999865     678888877643211       1112456666667889999999


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccC-hhhhhhhCCC--CCcceeeeccccccccCCcceeEEEecchhhhhhccCCcc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGL--EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      ++|+++|++||+++++|++|+.+.+.. ........++  ...|+++.+.+|.++. .| |+++. +++.+.........
T Consensus       260 ~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G-G~i~~-~~~li~~l~~~~~~  336 (489)
T PLN02483        260 PEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG-GYIAG-SKELIQYLKRTCPA  336 (489)
T ss_pred             HHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-Cc-eEEEc-CHHHHHHHHHhCcc
Confidence            999999999999999999998543311 0000001111  2459999999999975 34 66554 33333322111111


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-H---HHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-L---KGLQAYL  255 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~g~~~~~  255 (367)
                      +.....                                            ... .....+.++++.+. .   +...+..
T Consensus       337 ~~~~~~--------------------------------------------~~p-~~~~~~~aaL~~l~~~~g~~~~~~~~  371 (489)
T PLN02483        337 HLYATS--------------------------------------------MSP-PAVQQVISAIKVILGEDGTNRGAQKL  371 (489)
T ss_pred             ccccCC--------------------------------------------cCH-HHHHHHHHHHHHHHhCccccchHHHH
Confidence            111100                                            000 01112233344321 1   2234556


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCC
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPE  331 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~  331 (367)
                      ++.+++++++++.|+++ |+.+..+....++.+.+.. .....++.+.|.++|+... +..+    .+...+|+++ +..
T Consensus       372 ~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~-~~~~~~~~~~Ll~~GI~v~-~~~fp~~p~~~~~vRi~i-sa~  447 (489)
T PLN02483        372 AQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYN-PAKIPAFSRECLKQNVAVV-VVGFPATPLLLARARICI-SAS  447 (489)
T ss_pred             HHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECC-HHHHHHHHHHHHHCCcEEe-eeCCCCCCCCCceEEEEe-CCC
Confidence            78889999999999998 8877655555565555433 2334578888888885543 3322    2246899976 455


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy3048         332 TNQCDVAFAWNEISHQSSEMNLPRGS  357 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~~~~~~  357 (367)
                      .+++|+++++++|+++++.+.-+-++
T Consensus       448 ~t~edId~~l~~L~~~~~~~~~~~~~  473 (489)
T PLN02483        448 HSREDLIKALEVISEVGDLVGIKYFP  473 (489)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCceecc
Confidence            67999999999999999887655433

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.79  E-value=8.4e-18  Score=165.05  Aligned_cols=267  Identities=15%  Similarity=0.083  Sum_probs=167.5

Q ss_pred             CcchhHHHHHHhCCcceE----EEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhc
Q psy3048          38 QSNSSVEKSAIIGDVPVR----QLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEY  112 (367)
Q Consensus        38 ~~H~s~~~~~~~~g~~v~----~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~  112 (367)
                      .+|.+...+++..+..+.    .+.++ +++.+|+++|++++.+..     |.+|+++  .+.+|...|+++|.++|+++
T Consensus       138 l~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~-----pklIv~~--~S~~s~~~D~a~i~~ia~~~  210 (475)
T PLN03226        138 LSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFR-----PKLIIAG--ASAYPRDWDYARMRKIADKV  210 (475)
T ss_pred             hhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcC-----CeEEEEe--cCcCCCccCHHHHHHHHHHc
Confidence            444444444444433322    33444 579999999999986532     4455443  45578889999999999999


Q ss_pred             CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQS  192 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  192 (367)
                      |++++||+||+.+.+..+....   .+..+|++++++||||.+|.| |++++++. ...........+.           
T Consensus       211 ga~LlvD~AH~~Gli~~~~~~~---p~~~~Div~~t~hK~L~GP~G-g~I~~~~~-~~~~~~~g~~~~~-----------  274 (475)
T PLN03226        211 GALLMCDMAHISGLVAAQEAAS---PFEYCDVVTTTTHKSLRGPRG-GMIFFRKG-PKPPKGQGEGAVY-----------  274 (475)
T ss_pred             CCEEEEEchhhhCcccCCCCCC---CCCCCeEEEecCcccccCCCc-eEEEEchh-hcccccCCCccHH-----------
Confidence            9999999999998876543221   233579999999999999998 77777543 1211000000000           


Q ss_pred             CCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         193 PDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                       +|  ..... ....|                  ..+++. .....++.++++.+...+++++.++..+++++|++.|.+
T Consensus       275 -d~--~~~i~-~a~~~------------------~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~  332 (475)
T PLN03226        275 -DY--EDKIN-FAVFP------------------GLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS  332 (475)
T ss_pred             -HH--HHHhc-cccCC------------------ccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh
Confidence             00  00000 00000                  011111 123456677788877778888899999999999999998


Q ss_pred             CCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe----E--ECCeeEEEEEe---cCCCCCHHHHHHHH
Q psy3048         272 DDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA----S--FQGRPFLRFVV---TSPETNQCDVAFAW  341 (367)
Q Consensus       272 ~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~----~--~~~~~~lRi~~---~~~~~~~edid~li  341 (367)
                       .|++++.+ ...+++.+.+........++.+.|...|+. +...    .  .-.+..+|+..   ++...+++|++++.
T Consensus       333 -~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~-~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia  410 (475)
T PLN03226        333 -KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHIT-LNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVA  410 (475)
T ss_pred             -CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCE-ECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHH
Confidence             49999864 235666666543222345677777777743 2211    1  11234688722   45566799999999


Q ss_pred             HHHHHHHHHh
Q psy3048         342 NEISHQSSEM  351 (367)
Q Consensus       342 ~~l~~~~~~~  351 (367)
                      +.|.++++..
T Consensus       411 ~~i~~~~~~~  420 (475)
T PLN03226        411 EFLHRAVTIA  420 (475)
T ss_pred             HHHHHHHHHh
Confidence            9999988853

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.79  E-value=9.5e-18  Score=161.23  Aligned_cols=262  Identities=11%  Similarity=0.049  Sum_probs=181.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      .|++.+..+.+....+.+.|++++.++++   .++.+|+++|++++.+.++      ++++++|+||||.+   +.+++|
T Consensus       115 eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk------~i~ln~P~NPTGav~~~~~l~~i  188 (393)
T COG0436         115 EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTK------AIILNSPNNPTGAVYSKEELKAI  188 (393)
T ss_pred             EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccce------EEEEeCCCCCcCcCCCHHHHHHH
Confidence            36677889999999999999999999974   3899999999999999774      99999999999998   578999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhh--CCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLK--RGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~--~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +++|++||++++.|++|....+........+  .+....-+.+-+..|.++ +++.+|+++..+....... .....+  
T Consensus       189 ~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~-~~~~~~--  265 (393)
T COG0436         189 VELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAAL-RKLKSY--  265 (393)
T ss_pred             HHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHH-HHHHHh--
Confidence            9999999999999999987666431111111  111011233445788876 5588999998644333221 100111  


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISL  261 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~l  261 (367)
                                                                  ...+.+.+...+..++|..-. .+.++...+...+.
T Consensus       266 --------------------------------------------~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~r  301 (393)
T COG0436         266 --------------------------------------------LTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRER  301 (393)
T ss_pred             --------------------------------------------cccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence                                                        111112122233333333221 23556666778899


Q ss_pred             HHHHHHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC----CeeEEEEEecCCCCCHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ----GRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~----~~~~lRi~~~~~~~~~ed  336 (367)
                      ++.+.+.|.+++|+.+..+| ....++..++. ...+.+++++|+++..+.+.|+...    |.+++|+++..   ++++
T Consensus       302 rd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~-~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~---~~~~  377 (393)
T COG0436         302 RDLLVEALNEIGGLSVVKPPEGAFYLFPKIPE-LLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT---SEET  377 (393)
T ss_pred             HHHHHHHHHhcCCeeeccCCCeeEEEEeecCC-CCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec---CHHH
Confidence            99999999999899998855 55555556654 2346789999888876666665443    34699997754   4588


Q ss_pred             HHHHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQSSE  350 (367)
Q Consensus       337 id~li~~l~~~~~~  350 (367)
                      ++..++.+++.++.
T Consensus       378 l~~a~~rl~~~~~~  391 (393)
T COG0436         378 LEEALRRLARFLAE  391 (393)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999888765

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.79  E-value=2.5e-17  Score=160.24  Aligned_cols=262  Identities=14%  Similarity=0.078  Sum_probs=170.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-+|+++...|.++..+++..|++++.++.+     |.+++++.++....  ..+.+|++++++|++|.+.|+++|.++|
T Consensus       132 g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~t~~v~i~~~~n~tG~~~~l~~i~~l~  204 (410)
T PRK13392        132 GCVILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASVDP--DRPKLIAFESVYSMDGDIAPIEAICDLA  204 (410)
T ss_pred             CCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhccC--CCCEEEEEeCCCCCCcccccHHHHHHHH
Confidence            3477888889999999988899998877643     66778777764321  1246899999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccCh-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLP-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+... ..-....+ .+..|+++.+.+|+++.+.  |++.. +.+..........+|.....  
T Consensus       205 ~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~~~-~~~~~~~l~~~~~~~~~s~~--  279 (410)
T PRK13392        205 DRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYIAA-SADLIDFVRSFAPGFIFTTA--  279 (410)
T ss_pred             HHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc--chhhc-CHHHHHHHHHhCcchhccCc--
Confidence            999999999999985543211 00000112 2346888889999998653  55543 33333321111122211100  


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                . ....+.++.++|+.....  ....++..+.++++.+
T Consensus       280 ------------------------------------------~-~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~  314 (410)
T PRK13392        280 ------------------------------------------L-PPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKA  314 (410)
T ss_pred             ------------------------------------------C-CHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHH
Confidence                                                      0 001123344555543222  2344667888899999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .|+++ |+++. ++..+++.+.+.. .....++.++|. ++| +++.+..    ..+..++|+++ +...+++|+|++++
T Consensus       315 ~L~~~-g~~~~-~~~~~~~~i~~~~-~~~~~~~~~~L~~~~G-I~v~~~~~p~~~~~~~~lRis~-~~~~t~edid~l~~  389 (410)
T PRK13392        315 KLNAN-GIPVM-PSPSHIVPVMVGD-PTLCKAISDRLMSEHG-IYIQPINYPTVPRGTERLRITP-TPLHDDEDIDALVA  389 (410)
T ss_pred             HHHHc-CCCCC-CCCCCEEEEEeCC-HHHHHHHHHHHHHhCC-EEEeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHH
Confidence            99887 77765 3455666555542 334568888887 457 4554432    12446899976 56778999999999


Q ss_pred             HHHHHHHHhhC
Q psy3048         343 EISHQSSEMNL  353 (367)
Q Consensus       343 ~l~~~~~~~~~  353 (367)
                      +|+++.+++..
T Consensus       390 aL~~~~~~~~~  400 (410)
T PRK13392        390 ALVAIWDRLEL  400 (410)
T ss_pred             HHHHHHHHcCC
Confidence            99999877643

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.79  E-value=3.4e-17  Score=158.35  Aligned_cols=257  Identities=13%  Similarity=0.018  Sum_probs=173.3

Q ss_pred             CceEEEecCCcchhHHHHHHhC----CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIG----DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~----g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      ++.+|+++..+|.|+..++++.    ++++..++++     |+++|+++++....+   ..+|++....++.|.+.|+++
T Consensus       199 ~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~---~~~Vv~EgV~SmdGdiapL~e  270 (476)
T PLN02955        199 EKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMK---RKVVVTDSLFSMDGDFAPMEE  270 (476)
T ss_pred             CCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCC---ceEEEEeCCCCCCCCcCCHHH
Confidence            3568899999999999999986    5777777765     999999999765431   356777777899999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh-hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP-EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||++++||+||+.+.+... .......++ ...|+++.+..|.+++.  .|++.. +....+........|++
T Consensus       271 L~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~--GGfi~g-s~~~~~~l~~~~~~~if  347 (476)
T PLN02955        271 LSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH--GGFIAC-SKKWKQLIQSRGRSFIF  347 (476)
T ss_pred             HHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc--Cceeec-HHHHHHHHHHhCCCCee
Confidence            99999999999999999997655320 100111122 34689999999998643  334444 33333322233445554


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      +...                                            .. ..+.+..++++.+..+  ..+.++.+++.
T Consensus       348 Stal--------------------------------------------pp-~~aaa~laal~l~~~~--~~~r~~L~~n~  380 (476)
T PLN02955        348 STAI--------------------------------------------PV-PMAAAAYAAVVVARKE--KWRRKAIWERV  380 (476)
T ss_pred             cccc--------------------------------------------cH-HHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence            4311                                            00 1122333444433222  23567788888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeEECCeeEEEEEecCCCCCHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KASFQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~~~~~~~lRi~~~~~~~~~edid  338 (367)
                      +|+++.+    |+.+    .++++.+.+.. +....++.++|.++|.+ +.    |+...+...+|+++ +...+++||+
T Consensus       381 ~~fr~~~----G~~~----~sPI~pI~ig~-~~~a~~~~~~L~~~Gi~-v~~i~yPtVP~g~~rLRi~l-sA~Ht~edId  449 (476)
T PLN02955        381 KEFKALS----GVDI----SSPIISLVVGN-QEKALKASRYLLKSGFH-VMAIRPPTVPPNSCRLRVTL-SAAHTTEDVK  449 (476)
T ss_pred             HHHHHhc----CCCC----CCCEEEEEeCC-HHHHHHHHHHHHHCCCE-EEEECCCCCCCCCceEEEee-CCCCCHHHHH
Confidence            9998842    5542    35666666644 55567889999999954 43    34446677899977 4566799999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy3048         339 FAWNEISHQSSEMNLP  354 (367)
Q Consensus       339 ~li~~l~~~~~~~~~~  354 (367)
                      +++++|.++.+....+
T Consensus       450 ~lv~~L~~~~~~~~~~  465 (476)
T PLN02955        450 KLITALSSCLDFDNTA  465 (476)
T ss_pred             HHHHHHHHHHhhhcce
Confidence            9999999987765443

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.79  E-value=2.4e-17  Score=159.98  Aligned_cols=261  Identities=12%  Similarity=0.048  Sum_probs=169.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +.+|+++...|.++..++...|+++..++.+     |++++++.++....  ..+.+|++++++|++|.+.|+++|.++|
T Consensus       131 ~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~~~~v~~e~~~~~~G~~~~l~~i~~l~  203 (402)
T TIGR01821       131 GCVIFSDELNHASMIEGIRHSGAEKFIFRHN-----DVAHLEKLLQSVDP--NRPKIIAFESVYSMDGDIAPIEEICDLA  203 (402)
T ss_pred             CCEEEEcchHhHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence            4577777789999999998889887766543     78889888864311  1246888999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccC-hhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLL-PEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+.. ........++ ...|++..+..|.++.+.  |+++. +++..........+|.+..   
T Consensus       204 ~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G--G~i~~-~~~~~~~l~~~~~~~~~t~---  277 (402)
T TIGR01821       204 DKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG--GYIAA-SRKLIDAIRSYAPGFIFTT---  277 (402)
T ss_pred             HHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC--ceeec-CHHHHHHHHHhCcCceecC---
Confidence            99999999999998554311 0000001122 235888889999997643  45443 3332322111111111110   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                               . .....+.+..++++.+...  ..+.++..++++++.+
T Consensus       278 -----------------------------------------~-~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~  313 (402)
T TIGR01821       278 -----------------------------------------S-LPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKN  313 (402)
T ss_pred             -----------------------------------------c-CCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHH
Confidence                                                     0 0001123334455544322  4445566789999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .|+++ |++++. +..+++.+.+.. .....++.++|.++ | +++.+..    ..+..++|+++ +.+.+++|++++++
T Consensus       314 ~L~~~-g~~~~~-~~~~i~~i~~~~-~~~a~~~~~~L~~~~G-i~v~~~~~p~~~~g~~~lRis~-~~~~t~edi~~~~~  388 (402)
T TIGR01821       314 LLEAL-GIPVIP-NPSHIVPVIIGD-AALCKKVSDLLLNKHG-IYVQPINYPTVPRGTERLRITP-TPAHTDKMIDDLVE  388 (402)
T ss_pred             HHHHc-CCCcCC-CCCCEEEEEeCC-HHHHHHHHHHHHhcCC-EEEEeECCCCCCCCCceEEEEe-CCCCCHHHHHHHHH
Confidence            99887 777653 345666665532 23456788888755 6 4554422    23456899976 56788999999999


Q ss_pred             HHHHHHHHhh
Q psy3048         343 EISHQSSEMN  352 (367)
Q Consensus       343 ~l~~~~~~~~  352 (367)
                      +|+++++++.
T Consensus       389 ~l~~~~~~~~  398 (402)
T TIGR01821       389 ALLLVWDRLG  398 (402)
T ss_pred             HHHHHHHHcC
Confidence            9999988753

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.78  E-value=4.5e-17  Score=158.26  Aligned_cols=262  Identities=11%  Similarity=0.040  Sum_probs=171.1

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      ++.+|+++...|.+...++...|+++..++.+     |+++|++.++....  ..+.+|+++++.+++|.+.|+++|.++
T Consensus       131 ~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~--~~~~~v~~~~v~s~~G~~~~l~~i~~l  203 (407)
T PRK09064        131 PDCVIFSDELNHASMIEGIRRSRCEKHIFRHN-----DVAHLEELLAAADP--DRPKLIAFESVYSMDGDIAPIAEICDL  203 (407)
T ss_pred             CCCEEEEeCcchHHHHHHHHHcCCcEEEECCC-----CHHHHHHHHHhccC--CCCeEEEEeCCCCCCccccCHHHHHHH
Confidence            45678888888999988988888887766643     88999998864321  124688899999999999999999999


Q ss_pred             HhhcCcEEEEeccccccccc-ChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALL-LPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~-~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|++|+.+.+. ....-....++ ...|+++.+.+|.++.+ | |+++. ++..+........+|.+..  
T Consensus       204 ~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-G-G~~~~-~~~~~~~l~~~~~~~~~t~--  278 (407)
T PRK09064        204 ADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-G-GYIAG-SAALVDAVRSYAPGFIFTT--  278 (407)
T ss_pred             HHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc-C-ceEec-CHHHHHHHHHhCccccccC--
Confidence            99999999999999854321 11000011122 34588888999998753 3 55554 3333322111111111110  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                . .....+.+...+++.+...  ....++..++++++.
T Consensus       279 ------------------------------------------~-~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~  313 (407)
T PRK09064        279 ------------------------------------------S-LPPAIAAAALASIRHLKES--NEERERHQERAAKLK  313 (407)
T ss_pred             ------------------------------------------c-CCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence                                                      0 0011123344455544332  234567889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.|+++ |++++. +..+++.+.+.. .....++.++|.++ | +++.+..    ..+..++|+++ +.+++++|+++++
T Consensus       314 ~~L~~~-g~~~~~-~~~~iv~i~~~~-~~~~~~l~~~L~~~~g-i~v~~~~~p~~~~~~~~lRis~-~~~~t~edi~~l~  388 (407)
T PRK09064        314 AALDAA-GIPVMP-NESHIVPVMVGD-PEKCKKASDMLLEEHG-IYVQPINYPTVPRGTERLRITP-TPFHTDEMIDHLV  388 (407)
T ss_pred             HHHHHc-CCCCCC-CCCCEEEEEeCC-HHHHHHHHHHHHHhCC-EEEeeECCCCCCCCCceEEEEe-CCCCCHHHHHHHH
Confidence            999886 777654 445666666643 23456888888755 6 4454322    12446899976 5788899999999


Q ss_pred             HHHHHHHHHhh
Q psy3048         342 NEISHQSSEMN  352 (367)
Q Consensus       342 ~~l~~~~~~~~  352 (367)
                      ++|+++++++.
T Consensus       389 ~~l~~~~~~~~  399 (407)
T PRK09064        389 EALVEVWARLG  399 (407)
T ss_pred             HHHHHHHHHcC
Confidence            99999987653

>PLN02822 serine palmitoyltransferase

Probab=99.78  E-value=2.1e-16  Score=155.99  Aligned_cols=266  Identities=11%  Similarity=0.076  Sum_probs=174.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC---CCcc-EEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK---GLIP-CCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~---~~~~-~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-+|+++...|+++..++.+.|.+++.++++     |.++|+..+++..+.   .... .+|++....+++|.+.|+++|
T Consensus       193 gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i  267 (481)
T PLN02822        193 GDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEI  267 (481)
T ss_pred             CCEEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHH
Confidence            3356678999999999999999999999876     677777777653221   0112 578888888889999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccC-hhhhhhhCCC--CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGL--EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      .++|++||+++++|++|+.+.+.- ...-....++  ...|+++.+..|.++.+ | |+++. +...+.........|.+
T Consensus       268 ~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~-G-G~i~g-~~~ii~~~~~~~~~~~f  344 (481)
T PLN02822        268 VRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATE-G-GFCTG-SARVVDHQRLSSSGYVF  344 (481)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhC-C-eEEEc-CHHHHHHHHhcCCceee
Confidence            999999999999999998554321 1000111223  25699999999998743 3 55554 33333221111112221


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...                                            . +.+.+.+..++|+.+.  ...+..++.+++.
T Consensus       345 sa~--------------------------------------------l-Pp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~  377 (481)
T PLN02822        345 SAS--------------------------------------------L-PPYLASAAITAIDVLE--DNPSVLAKLKENI  377 (481)
T ss_pred             ccc--------------------------------------------c-CHHHHHHHHHHHHHHH--hCHHHHHHHHHHH
Confidence            110                                            0 0011122233444332  2256778899999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------chHHHHHHHHHh-ccCcEEEEEeEE------CCeeEEEEEec
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------NDLTNQLYERLM-SHKQIYIIKASF------QGRPFLRFVVT  328 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~-~~g~~~~~~~~~------~~~~~lRi~~~  328 (367)
                      +++++.|++++|+.+..++...++.+.+.+.       .....++.++|. ++| +++.+..+      ..+..+|++++
T Consensus       378 ~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~G-V~v~~~~~~~~~~~~~~~~lRi~is  456 (481)
T PLN02822        378 ALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDS-VLVVVSKRSTLDKCRLPVGIRLFVS  456 (481)
T ss_pred             HHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCC-EEEEeeCCCCcCCCCCCCcEEEEEC
Confidence            9999999998888886667778888887531       122357888887 667 45554311      12357999764


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         329 SPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       ...+++||++++++|+++++++-
T Consensus       457 -~~~t~edI~~~~~~l~~~~~~~~  479 (481)
T PLN02822        457 -AGHTESDILKASESLKRVAASVL  479 (481)
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHh
Confidence             45589999999999999988753

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.78  E-value=1.7e-17  Score=161.67  Aligned_cols=262  Identities=13%  Similarity=0.045  Sum_probs=164.4

Q ss_pred             ceEEEecCCcchhHHH---HH--HhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSSVEK---SA--IIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~---~~--~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .-.|+++..+|.+...   ..  ...|++++.++.+ +++.+|+++|++++++..     +.+|+++.  +.+|...|++
T Consensus       111 gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~k~v~~~~--~~~~~~~~~~  183 (416)
T PRK00011        111 GDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHK-----PKLIIAGA--SAYSRPIDFK  183 (416)
T ss_pred             CCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcC-----CCEEEECC--CcCCCccCHH
Confidence            3457777778865322   11  2245788888876 458999999999997521     23555543  3467778999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|.++|++||+++++|+||+.+.........   .+..+|+++.++||++.+|.| |+++..++............+...
T Consensus       184 ~I~~la~~~~~~livD~a~~~g~~~~g~~~~---~~~~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~~~~~  259 (416)
T PRK00011        184 RFREIADEVGAYLMVDMAHIAGLVAAGVHPS---PVPHADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFPGIQG  259 (416)
T ss_pred             HHHHHHHHcCCEEEEECcchhcccccCccCC---CCCCCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCccccC
Confidence            9999999999999999999765442211111   122469999999999976654 566665444333221111010000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .        +..                                      ....++..++.....++++++.++..++++
T Consensus       260 ~--------~~~--------------------------------------~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~  293 (416)
T PRK00011        260 G--------PLM--------------------------------------HVIAAKAVAFKEALEPEFKEYAQQVVKNAK  293 (416)
T ss_pred             C--------ccH--------------------------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            0        000                                      011233334444445678889999999999


Q ss_pred             HHHHHhcCCCCeEEeC-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE----e---EECCeeEEEEEec---CCCC
Q psy3048         264 KFADLVEKDDRFELVC-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK----A---SFQGRPFLRFVVT---SPET  332 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~---~~~~~~~lRi~~~---~~~~  332 (367)
                      ++++.|++. |+++.. ....+.+++.+.+......++.+.|.++|+. +..    .   ....+..+|++..   ....
T Consensus       294 ~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~-v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~  371 (416)
T PRK00011        294 ALAEALAER-GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANIT-VNKNAVPFDPRSPFVTSGIRIGTPAITTRGF  371 (416)
T ss_pred             HHHHHHHhC-CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcE-EccCcCCCCCCCCCCCCceEecCHHHhhcCc
Confidence            999999986 888763 2344677777643221346788888888854 321    1   1112346898431   1245


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~  350 (367)
                      +++|+++++++|+++++.
T Consensus       372 t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        372 KEAEMKEIAELIADVLDN  389 (416)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            799999999999998664

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.78  E-value=3.2e-17  Score=157.86  Aligned_cols=258  Identities=14%  Similarity=0.059  Sum_probs=168.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .|++++.+|..+...++..|++++.++.+.   ++.+|+++|++.+++.+      .++++++++|++|.+-   ++++|
T Consensus       110 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~------~~i~l~~p~NPtG~~~~~~~~~~l  183 (382)
T PRK06108        110 EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRT------RALFINSPNNPTGWTASRDDLRAI  183 (382)
T ss_pred             EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccc------eEEEEECCCCCCCcccCHHHHHHH
Confidence            466677899998888999999999999863   46799999999886544      4777889999999874   57889


Q ss_pred             HHHHhhcCcEEEEeccccccccc-Chhhhh--hhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCcccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALL-LPEYAH--LKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~-~~~~~~--~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      +++|+++|+++++|++|+.+.+. ......  .+.......+++.+.+|.++. +.++|+++... +.+..... ...+.
T Consensus       184 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~-~~~~~~~~-~~~~~  261 (382)
T PRK06108        184 LAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPP-ALGQVLEK-LIEYN  261 (382)
T ss_pred             HHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCH-HHHHHHHH-HHHhc
Confidence            99999999999999999876543 111110  011111224778889998864 45689988743 32322110 00000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ..                                              +...+.......++.. +.+.+++..++..++
T Consensus       262 ~~----------------------------------------------~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~  294 (382)
T PRK06108        262 TS----------------------------------------------CVAQFVQRAAVAALDE-GEDFVAELVARLRRS  294 (382)
T ss_pred             cc----------------------------------------------CCChHHHHHHHHHHhC-ChHHHHHHHHHHHHH
Confidence            00                                              0000111222222321 334567778888899


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+++.+.|++++|+.+..+.....++++++. .....++.+.|.+ .| +++.++. +  .+..++|++++.   +++++
T Consensus       295 ~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~-~~~~~~~~~~ll~~~g-V~v~pg~~f~~~~~~~~Ris~~~---~~~~l  369 (382)
T PRK06108        295 RDHLVDALRALPGVEVAKPDGAMYAFFRIPG-VTDSLALAKRLVDEAG-LGLAPGTAFGPGGEGFLRWCFAR---DPARL  369 (382)
T ss_pred             HHHHHHHHHhCCCCcccCCCeeEEEEEeCCC-CCCHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEecC---CHHHH
Confidence            9999999988888887654433445566653 2235678888765 56 4454432 2  235799998753   78999


Q ss_pred             HHHHHHHHHHHH
Q psy3048         338 AFAWNEISHQSS  349 (367)
Q Consensus       338 d~li~~l~~~~~  349 (367)
                      +.+++.|+++++
T Consensus       370 ~~~l~~l~~~l~  381 (382)
T PRK06108        370 DEAVERLRRFLA  381 (382)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.77  E-value=7.9e-17  Score=155.83  Aligned_cols=261  Identities=11%  Similarity=0.032  Sum_probs=170.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++..|..+..+++..|++++.++.+  .++.+|+++|++++++.+      .+|++++++|++|.+.   ++++
T Consensus       115 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~~~~~~~~  188 (393)
T PRK05764        115 GDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKT------KALILNSPSNPTGAVYSPEELEA  188 (393)
T ss_pred             CCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccc------eEEEEECCCCCCCcccCHHHHHH
Confidence            3467778899999999999999999999986  357899999999986654      4778889999999984   5889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChh---hhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      |+++|++||+++++|++|+...+....   ......+....+++..+..|.++.| ..+|+++.. ++.......    +
T Consensus       189 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~-~~~~~~~~~----~  263 (393)
T PRK05764        189 IADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGP-KELIKAMSK----L  263 (393)
T ss_pred             HHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecC-HHHHHHHHH----H
Confidence            999999999999999999765432111   1111112222367788889998744 347777743 333322110    0


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAYLRKH  258 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~~~~~  258 (367)
                      ......                                        .      ...+..+++.+.+  ..+.+++..++.
T Consensus       264 ~~~~~~----------------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~  297 (393)
T PRK05764        264 QSHSTS----------------------------------------N------PTSIAQYAAVAALNGPQDEVEEMRQAF  297 (393)
T ss_pred             Hhhccc----------------------------------------C------CChHHHHHHHHHHcCChHHHHHHHHHH
Confidence            000000                                        0      0112223333332  234566677777


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCch----HHHHHHHHHhc-cCcEEEEEe-EECCeeEEEEEecCCCC
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDND----LTNQLYERLMS-HKQIYIIKA-SFQGRPFLRFVVTSPET  332 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~----~~~~l~~~L~~-~g~~~~~~~-~~~~~~~lRi~~~~~~~  332 (367)
                      .+..+++.+.|++++|+.+..+.....+++.++....    ...++.+.+.+ .|+ .+.++ .+....++|+++..   
T Consensus       298 ~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~f~~~~~vRis~~~---  373 (393)
T PRK05764        298 EERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGV-AVVPGIAFGAPGYVRLSYAT---  373 (393)
T ss_pred             HHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCE-EEccccccCCCCEEEEEecC---
Confidence            8888999999999888887654433344555543111    13678777765 464 44433 33335799997643   


Q ss_pred             CHHHHHHHHHHHHHHHHHh
Q psy3048         333 NQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~  351 (367)
                      ++++++.++++|.+++++.
T Consensus       374 ~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        374 SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            6999999999999987653

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.77  E-value=1.5e-16  Score=153.83  Aligned_cols=263  Identities=14%  Similarity=0.062  Sum_probs=168.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++..|++...++...|++++.++.     .|+++|++++++.......+++|+..+..+++|.+.|+++|.++|
T Consensus       126 gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la  200 (397)
T PRK06939        126 EDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLA  200 (397)
T ss_pred             CCEEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHH
Confidence            345777889999999999989998887764     489999999876332222345677766788899999999999999


Q ss_pred             hhcCcEEEEecccccccccC-hhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLL-PEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+.. ........++ ...|+++.+.+|++.++ ..|+++.+ +...........++.....  
T Consensus       201 ~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~-r~G~v~~~-~~~~~~l~~~~~~~~~~~~--  276 (397)
T PRK06939        201 DKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA-SGGYTAGR-KEVIDWLRQRSRPYLFSNS--  276 (397)
T ss_pred             HHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc-CceEEEeC-HHHHHHHHHhCccccccCC--
Confidence            99999999999996433221 1101111122 24589999999999655 45777764 3333322111111110000  


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                . ....+.++.++++.+. . .++..++..++.+++.+
T Consensus       277 ------------------------------------------~-~~~~~~a~~~al~~~~-~-~~~~~~~~~~~~~~l~~  311 (397)
T PRK06939        277 ------------------------------------------L-APAIVAASIKVLELLE-E-SDELRDRLWENARYFRE  311 (397)
T ss_pred             ------------------------------------------C-CHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHH
Confidence                                                      0 0001122333344332 1 24667788899999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ ++++.. +..+.+.+.++. .....++.+.|.++|+. +.+..+    .+..++|+++ +.+++++|++++++.
T Consensus       312 ~L~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~L~~~gI~-v~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~l~~  386 (397)
T PRK06939        312 GMTAA-GFTLGP-GEHPIIPVMLGD-AKLAQEFADRLLEEGVY-VIGFSFPVVPKGQARIRTQM-SAAHTKEQLDRAIDA  386 (397)
T ss_pred             HHHHc-CCCcCC-CCCCEEEEEECC-HHHHHHHHHHHHHCCce-EeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHHH
Confidence            99886 666543 333444444432 23456899999989854 433322    2346899966 456789999999999


Q ss_pred             HHHHHHHh
Q psy3048         344 ISHQSSEM  351 (367)
Q Consensus       344 l~~~~~~~  351 (367)
                      |+++++++
T Consensus       387 L~~~~~~~  394 (397)
T PRK06939        387 FEKVGKEL  394 (397)
T ss_pred             HHHHHHHh
Confidence            99987764

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.77  E-value=3.4e-17  Score=159.11  Aligned_cols=262  Identities=13%  Similarity=0.053  Sum_probs=161.9

Q ss_pred             ceEEEecCCcchh-HHHHHHh--CCcce--EEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSS-VEKSAII--GDVPV--RQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s-~~~~~~~--~g~~v--~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .-.|++++.+|.+ +..+++.  .+..+  ..++++ .++.+|+++|++.+++..     +.+|++..  +.+|...|++
T Consensus       114 GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-----~klVi~~~--~~~g~~~dl~  186 (416)
T PRK13034        114 GDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHK-----PKLIIAGF--SAYPRELDFA  186 (416)
T ss_pred             CCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcC-----CeEEEECC--CccccccCHH
Confidence            4467778888877 3333332  12222  234443 357799999999986521     34665543  4468888999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|.++||+||+++++|+||+.+.+..+...   ..+..+|++++++|||+.+|.| |+++..++...... .   .+++.
T Consensus       187 ~l~~la~~~g~~livD~Aha~G~~~~g~~~---~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~-~---~~~~~  258 (416)
T PRK13034        187 RFREIADEVGALLMVDMAHIAGLVAAGEHP---NPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKI-N---SAVFP  258 (416)
T ss_pred             HHHHHHHHcCCEEEEeCcccccCcccCCCC---CCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHH-H---hhcCC
Confidence            999999999999999999998876543221   1234579999999999988876 55555444322211 0   11111


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      +..   + ...+                                      ....++..++......+..++.++..++++
T Consensus       259 ~~~---~-~~~~--------------------------------------~~~aa~~~al~~~~~~~~~~~~~~l~~~a~  296 (416)
T PRK13034        259 GLQ---G-GPLM--------------------------------------HVIAAKAVAFGEALQPEFKTYAKQVIANAQ  296 (416)
T ss_pred             ccc---C-CccH--------------------------------------HHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            100   0 0000                                      001222222333222344566789999999


Q ss_pred             HHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE----e---EECCeeEEEEEec---CCCC
Q psy3048         264 KFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK----A---SFQGRPFLRFVVT---SPET  332 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~---~~~~~~~lRi~~~---~~~~  332 (367)
                      +|+++|++. |+++..+ .+++++.+.+...+.....+.++|.+.|+ ++..    .   ....+..+|++.+   +...
T Consensus       297 ~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI-~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~  374 (416)
T PRK13034        297 ALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGI-TVNKNTVPGDTESPFVTSGIRIGTPAGTTRGF  374 (416)
T ss_pred             HHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCc-EEeccCCCCCCcCCCCCCeeEeCcHHHHhCCC
Confidence            999999987 9998753 45666666654422234556678888884 4432    1   1112457999652   2256


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~  350 (367)
                      +++|+++++++|++++++
T Consensus       375 ~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        375 GEAEFREIANWILDVLDD  392 (416)
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            699999999999998774

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.77  E-value=2.9e-17  Score=159.31  Aligned_cols=261  Identities=15%  Similarity=0.054  Sum_probs=161.1

Q ss_pred             eEEEecCCcchhHHHH-----HHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh
Q psy3048          31 LVAYASDQSNSSVEKS-----AIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~-----~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      -.|++++..|.+....     ++..|.+++.++.+.   ++.+|++++++++.+..     +.++++++++  +|...|+
T Consensus       106 d~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~-----~~~v~~~~~~--~~~~~~~  178 (402)
T cd00378         106 DTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFK-----PKLIVAGASA--YPRPIDF  178 (402)
T ss_pred             CEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCC-----CCEEEecCcc--cCCCcCH
Confidence            3566666777654322     455677777776542   68999999999986421     2466666553  4677899


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      ++|+++||+||+++++|++|..+....+.....   +..+|+++.++|||+.+|.| |++++.++....+......++..
T Consensus       179 ~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~---~~~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~~~~  254 (402)
T cd00378         179 KRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP---LPGADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFPGLQ  254 (402)
T ss_pred             HHHHHHHHhcCCEEEEEccchhhhhhcccCCCc---ccCCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCcccc
Confidence            999999999999999999986554322211111   12459999999999976655 55555543433322111101100


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..        +.+                                      ....++..++......++++..++..+++
T Consensus       255 ~~--------~~~--------------------------------------~~~~a~~~al~~~~~~~~~~~~~~~~~~~  288 (402)
T cd00378         255 GG--------PHL--------------------------------------HVIAAKAVALKEALEPEFKAYAKQVVENA  288 (402)
T ss_pred             CC--------chH--------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            00        000                                      01122233344333335677888899999


Q ss_pred             HHHHHHhcCCCCeEEeC-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE----eEE---CCeeEEEEEecC---CC
Q psy3048         263 KKFADLVEKDDRFELVC-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK----ASF---QGRPFLRFVVTS---PE  331 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~---~~~~~lRi~~~~---~~  331 (367)
                      +++.+.|+++ |+.+.. +...+.+++++++.......+.+.|.+.|+ .+.+    ...   .+...+|++.+.   ..
T Consensus       289 ~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI-~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~  366 (402)
T cd00378         289 KALAEALKER-GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGI-TVNKNTLPWDPSSPFVPSGIRIGTPAMTTRG  366 (402)
T ss_pred             HHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCc-EEcCCcCCCCCCCCCCCCeeEecCHHHHHhC
Confidence            9999999987 888764 446677777775322223456666776774 3422    111   134589996532   23


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy3048         332 TNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~  350 (367)
                      .+++|++.+++.|++++++
T Consensus       367 ~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         367 MGEEEMEEIADFIARALKD  385 (402)
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            4699999999999998664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.77  E-value=3.6e-17  Score=158.14  Aligned_cols=263  Identities=13%  Similarity=0.111  Sum_probs=169.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|.++...+...|++++.++++.  ++.+|+++|++++++.+      .++++++++|++|.+.|   +++
T Consensus       117 g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~v~i~~p~NPtG~~~~~~~~~~  190 (391)
T PRK08361        117 GDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRT------RMIVINYPNNPTGATLDKEVAKA  190 (391)
T ss_pred             CCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccccc------EEEEEeCCCCCCCcCcCHHHHHH
Confidence            34677788899999999999999999999864  46799999999987655      47788899999999988   899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      |+++|+++++++++|++|+.+.+...............++++.+.+|.++.| ..+|+++... +.+...... ..+...
T Consensus       191 l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~-~~~~~~~~~-~~~~~~  268 (391)
T PRK08361        191 IADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPE-QVIKDMIKL-HAYIIG  268 (391)
T ss_pred             HHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCH-HHHHHHHHH-Hhhhcc
Confidence            9999999999999999997654422111111110112367889999988754 2388888743 333221100 000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la  262 (367)
                      .                                              ...+....+...+..-. .+.+++..++..+..
T Consensus       269 ~----------------------------------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~  302 (391)
T PRK08361        269 N----------------------------------------------VASFVQIAGIEALRSKESWKAVEEMRKEYNERR  302 (391)
T ss_pred             C----------------------------------------------CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence            0                                              00011111112222111 134677777788888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.+.|++++|+.+..+.....++.+++.......++.+.|.+ .| +.+.++. +  .+..++|+++..   ++++++
T Consensus       303 ~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~g-v~v~pg~~f~~~~~~~iRi~~~~---~~~~l~  378 (391)
T PRK08361        303 KLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKAR-VVVIPGTAFGKAGEGYIRISYAT---SKEKLI  378 (391)
T ss_pred             HHHHHHHHhCCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCC-EEEcCchhhCCCCCCEEEEEecC---CHHHHH
Confidence            99999999888887655443334455665312235678888765 46 4454432 2  235799997653   577888


Q ss_pred             HHHHHHHHHHHH
Q psy3048         339 FAWNEISHQSSE  350 (367)
Q Consensus       339 ~li~~l~~~~~~  350 (367)
                      ..++.|++++++
T Consensus       379 ~al~~l~~~l~~  390 (391)
T PRK08361        379 EAMERMEKALEE  390 (391)
T ss_pred             HHHHHHHHHHhc
Confidence            888888887654

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.77  E-value=7e-17  Score=153.47  Aligned_cols=245  Identities=13%  Similarity=0.086  Sum_probs=164.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|..+...++..|++++.++.++++.+|+++|++++.+.+      .+|++++++|++|.+.|++++.++|+
T Consensus        96 d~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NptG~~~~~~~~~~l~~  169 (346)
T TIGR01141        96 DAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKP------KLVFLCSPNNPTGNLLSRSDIEAVLE  169 (346)
T ss_pred             CEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCC------CEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            456667777766667778899999999998778899999999875544      47888899999999999999999998


Q ss_pred             hc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 EY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      .+  |+++++|++|+.......... ..... ..+++..+.+|+++.| .++|+++.+ ++.+.+.......        
T Consensus       170 ~~~~~~~ii~D~~y~~~~~~~~~~~-~~~~~-~~~i~~~S~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~--------  238 (346)
T TIGR01141       170 RTPEDALVVVDEAYGEFSGEPSTLP-LLAEY-PNLIVLRTLSKAFGLAGLRIGYAIAN-AEIIDALNKVRAP--------  238 (346)
T ss_pred             hCCCCcEEEEECchhhhcCCccHHH-HHhhC-CCEEEEehhhHhhhchhhhceeeecC-HHHHHHHHhccCC--------
Confidence            87  999999999974332111111 11111 1246677889999544 468888874 3333221110000        


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~la~~l~  266 (367)
                             +                               .      ...+.+.++...+.. ..+++..++..++++++.
T Consensus       239 -------~-------------------------------~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  274 (346)
T TIGR01141       239 -------F-------------------------------N------LSRLAQAAAIAALRDDDFIEKTVEEINAERERLY  274 (346)
T ss_pred             -------C-------------------------------C------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence                   0                               0      001122222222222 247777888889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECC-eeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQG-RPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~-~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      +.|++++|+++. ++....+++.++.   ..+++.++|.++|+ .+.+.. +.+ .+++|+++.    +++|+++++++|
T Consensus       275 ~~L~~~~g~~~~-~~~g~~~~~~~~~---~~~~~~~~L~~~gI-~v~~g~~f~~~~~~iRls~~----~~~~i~~~~~~l  345 (346)
T TIGR01141       275 DGLKKLPGLEVY-PSDANFVLIRFPR---DADALFEALLEKGI-IVRDLNSYPGLPNCLRITVG----TREENDRFLAAL  345 (346)
T ss_pred             HHHHhcCCCEEC-CCcCCEEEEecCC---CHHHHHHHHHHCCe-EEEeCCCcCCCCCeEEEecC----CHHHHHHHHHHh
Confidence            999988888854 4455677777653   35788999998884 444432 212 578999753    689999999887


Q ss_pred             H
Q psy3048         345 S  345 (367)
Q Consensus       345 ~  345 (367)
                      +
T Consensus       346 ~  346 (346)
T TIGR01141       346 R  346 (346)
T ss_pred             C
Confidence            3

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.77  E-value=1.4e-16  Score=153.32  Aligned_cols=253  Identities=15%  Similarity=0.093  Sum_probs=164.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++..|.+...++...|++++.++..     |++++++++++..+   ...++++.++.+++|.+.|+++|.++|+
T Consensus       124 d~V~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~---~~~lvi~~~~~~~~G~~~~l~~i~~ia~  195 (385)
T PRK05958        124 DLIVSDKLNHASLIDGARLSRARVRRYPHN-----DVDALEALLAKWRA---GRALIVTESVFSMDGDLAPLAELVALAR  195 (385)
T ss_pred             CEEEEeCccCHHHHHHHHhcCCceEEeCCC-----CHHHHHHHHHhccC---CCeEEEEEecccCCCCcCCHHHHHHHHH
Confidence            356678899999999999999999888753     88999999875311   1246667778889999999999999999


Q ss_pred             hcCcEEEEecccccccccC-h-hhhhhhCCCC-C-cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLL-P-EYAHLKRGLE-Y-VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~-~-~~~~~~~~~~-~-~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||+++++|++|+.+.+.. . .... ..++. . .+++..+.+|+++. .| |+++. +++..+........+....  
T Consensus       196 ~~~~~li~De~~~~g~~~~~g~~~~~-~~~~~~~~~~i~~~s~sK~~~~-~G-g~~~~-~~~~~~~~~~~~~~~~~~~--  269 (385)
T PRK05958        196 RHGAWLLVDEAHGTGVLGPQGRGLAA-EAGLAGEPDVILVGTLGKALGS-SG-AAVLG-SETLIDYLINRARPFIFTT--  269 (385)
T ss_pred             HhCCEEEEECcccccccCCCCCchHH-hhCCCCCCceEEEEechhhccc-CC-cEEEc-CHHHHHHHHHhCccceecC--
Confidence            9999999999997654321 1 1111 01121 2 24778889999964 45 66554 3332221111111111000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                 ........++.++++.+...  .++.++..++.+++.
T Consensus       270 -------------------------------------------~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~  304 (385)
T PRK05958        270 -------------------------------------------ALPPAQAAAARAALRILRRE--PERRERLAALIARLR  304 (385)
T ss_pred             -------------------------------------------CCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHH
Confidence                                                       00001123344445443222  566788889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|+++ ++++. ++..+++.|.++. .....++.++|.++|+. +.+..    ..+..++|+++ +.+++++|++++++
T Consensus       305 ~~L~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~gI~-v~~~~~~~~~~~~~~lRis~-~~~~~~~~i~~~l~  379 (385)
T PRK05958        305 AGLRAL-GFQLM-DSQSAIQPLIVGD-NERALALAAALQEQGFW-VGAIRPPTVPAGTSRLRITL-TAAHTEADIDRLLE  379 (385)
T ss_pred             HHHHHc-CCCcC-CCCCCEEEEEeCC-HHHHHHHHHHHHHCCce-EecccCCCCCCCCceEEEEe-cCCCCHHHHHHHHH
Confidence            999886 66654 4556677787753 33456899999988854 43211    12346899976 56788999999999


Q ss_pred             HHHHH
Q psy3048         343 EISHQ  347 (367)
Q Consensus       343 ~l~~~  347 (367)
                      .|+++
T Consensus       380 ~l~~~  384 (385)
T PRK05958        380 ALAEA  384 (385)
T ss_pred             HHHhc
Confidence            99875

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.76  E-value=9.1e-17  Score=154.73  Aligned_cols=277  Identities=14%  Similarity=0.099  Sum_probs=170.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHH----HHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVK----EDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~----~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .-.|+++..+|.++..++...|+++++++++ +++.+|+++|+++++    +.+      .+|++++   ++|...|+++
T Consensus        69 Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t------~~v~~~~---~~G~~~~~~~  139 (380)
T TIGR03588        69 GDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLP------KAIVPVD---FAGKSVDMQA  139 (380)
T ss_pred             CCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCc------eEEEEeC---CCCccCCHHH
Confidence            3457788899999999999999999999996 468899999999997    333      3555543   4799999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||+++++|++|+.+...... .  +......|+.++|+|  |++..| ..|++++.++...++...    +..
T Consensus       140 i~~l~~~~~~~lI~D~a~a~g~~~~~~-~--~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~----~~~  211 (380)
T TIGR03588       140 IAALAKKHGLKIIEDASHALGAEYGGK-P--VGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRL----LRS  211 (380)
T ss_pred             HHHHHHHcCCEEEEECCCcccCccCCE-e--CCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHH----HHH
Confidence            999999999999999999876542111 0  011113499998887  999876 455566665544433210    000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      .+..   .....+  ..    ....|.. ++             ....+.++.+..+.+++...+.+.++++.++.++++
T Consensus       212 ~g~~---~~~~~~--~~----~~~~~~~-~~-------------~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~  268 (380)
T TIGR03588       212 HGIT---KDPLLF--EK----QDEGPWY-YE-------------QQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIA  268 (380)
T ss_pred             CCCC---CCcccc--cc----cccCcce-ee-------------eeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000   000000  00    0000000 00             000011122233344444334566889999999999


Q ss_pred             HHHHHHhcCCCCeEEeCCC-C----ceeEEEEEcC-CchHHHHHHHHHhccCcEEE---EEeEE--------CC------
Q psy3048         263 KKFADLVEKDDRFELVCPP-S----MGLVCFRLKG-DNDLTNQLYERLMSHKQIYI---IKASF--------QG------  319 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~-~----~~~v~f~~~~-~~~~~~~l~~~L~~~g~~~~---~~~~~--------~~------  319 (367)
                      +++.+.|++++++.+..++ .    .....+.+.. .....+++.+.|.++|+..-   .+...        ..      
T Consensus       269 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a  348 (380)
T TIGR03588       269 ARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSA  348 (380)
T ss_pred             HHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHH
Confidence            9999999999887755432 1    1222333332 11235688888988884211   11100        00      


Q ss_pred             ----eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         320 ----RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       320 ----~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                          ...+++ +++++.+++|+++++++|+++
T Consensus       349 ~~~~~~~l~l-P~~~~l~~~dv~~i~~~l~~~  379 (380)
T TIGR03588       349 ENFYLAEISL-PLHPALTLEQQQRVVETLRKV  379 (380)
T ss_pred             HHHHhceEEc-CCCCCCCHHHHHHHHHHHHHh
Confidence                146777 568889999999999999886

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.76  E-value=1.3e-16  Score=146.11  Aligned_cols=265  Identities=13%  Similarity=0.052  Sum_probs=185.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      +.||+. ...++.+++.+...|-++...|+.   ..+.||.++||+++.+..     ++++++++|+||+|.+   ++|.
T Consensus       108 d~Vvi~-tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP~Grvwt~eeL~  181 (388)
T COG1168         108 DGVVIQ-TPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTKEELR  181 (388)
T ss_pred             CeeEec-CCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCCCCccccHHHHH
Confidence            556654 468999999999999999998884   347789999999997754     2489999999999998   8999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhh-hhhhCCCCCcc--eeeeccccccccC-CcceeEEEecchhhhhhccCCcc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVD--SFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~-~~~~~~~~~~D--~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +|++||++||+.++.|+-|+-..+....+ .+..-+...+|  +.+.++.|.|+.+ -.++.+++.++....+.      
T Consensus       182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~------  255 (388)
T COG1168         182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKF------  255 (388)
T ss_pred             HHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHH------
Confidence            99999999999999999998665554222 22101111223  4455569999987 56777777665432211      


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                       +.....                                       ......+.+...+ +.+.-..|...+++..+...
T Consensus       256 -~~~l~~---------------------------------------~~~~~~n~lg~~A-~~aAY~~G~~WLd~L~~yl~  294 (388)
T COG1168         256 -LKRLKR---------------------------------------NGLHGPSALGIIA-TEAAYNQGEPWLDELLEYLK  294 (388)
T ss_pred             -HHHHHH---------------------------------------hcCCCCchHHHHH-HHHHHHhchHHHHHHHHHHH
Confidence             111100                                       0000000011122 22233348888999999999


Q ss_pred             HHHHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHH
Q psy3048         260 SLAKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       260 ~la~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~e  335 (367)
                      .+.+|+.+.|.+ +|++++..|..+..+.+.+........++.+.|.++..+.+.++..   .|.+++|+.+.+   +++
T Consensus       295 ~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac---pr~  371 (388)
T COG1168         295 DNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC---PRA  371 (388)
T ss_pred             HHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC---CHH
Confidence            999999999976 6899999888888888887664433468888888888887765543   457899996654   566


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         336 DVAFAWNEISHQSSE  350 (367)
Q Consensus       336 did~li~~l~~~~~~  350 (367)
                      -++..++.|+..++.
T Consensus       372 ~L~eal~ri~~al~~  386 (388)
T COG1168         372 ILEEALERLKRALKK  386 (388)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            777777777766553

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.75  E-value=5.4e-16  Score=150.64  Aligned_cols=260  Identities=12%  Similarity=0.044  Sum_probs=167.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-+|++++..|.++..+++..|.+++.++..     |++++++.++....  ..+.+|++.++++++|.+.|+++|.++|
T Consensus       131 g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~--~~~~~v~~~~v~~~~G~~~~l~~i~~l~  203 (406)
T PRK13393        131 GCVILSDELNHASMIEGIRHSRAEKRIFRHN-----DPADLERKLSDLDP--HRPKLVAFESVYSMDGDIAPIAEICDVA  203 (406)
T ss_pred             CCEEEEccchhHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHhccC--CCCEEEEEcCCCCCCCchhCHHHHHHHH
Confidence            3478888899999999999889888877653     78888888864321  1235788999999999999999999999


Q ss_pred             hhcCcEEEEeccccccccc-ChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALL-LPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~-~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+. ....-....++ ...|++..+..|.++.+ | |++.. ++...........+|....   
T Consensus       204 ~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~-G-G~~~~-~~~~~~~l~~~~~~~~~t~---  277 (406)
T PRK13393        204 EKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM-G-GYITG-SAALCDFIRSFASGFIFTT---  277 (406)
T ss_pred             HHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc-C-ceeeC-CHHHHHHHHHhCcCceecC---
Confidence            9999999999999855431 11100011122 23478878899999864 2 45443 3332222111111111110   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                ......+.++.++++.+...+.  ..++..++.+++.+
T Consensus       278 ------------------------------------------~~~p~~~aa~~aaL~~~~~~~~--~~~~~~~~~~~l~~  313 (406)
T PRK13393        278 ------------------------------------------SLPPAVAAGALASVRHLKASSA--ERERHQDRVARLRA  313 (406)
T ss_pred             ------------------------------------------ccCHHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHHH
Confidence                                                      0000112344455555433332  23566788999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEe----EECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKA----SFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .|+++ |++++ ++..+++.+.+.. .....++.++|.++ | +++.+.    ...+...+|+++ +.+++++|+|++++
T Consensus       314 ~L~~~-g~~~~-~~~~~i~~v~~~~-~~~~~~l~~~L~~~~G-i~v~~~~~p~~p~g~~~iRis~-~~~~t~edid~l~~  388 (406)
T PRK13393        314 RLDKA-GIPHL-PNPSHIVPVMVGD-PVLCKQISDELLDRYG-IYVQPINYPTVPRGTERLRITP-SPLHTDADIEHLVQ  388 (406)
T ss_pred             HHHHc-CCCcC-CCCCCeEEEEeCC-HHHHHHHHHHHHHhCC-EEEEeECCCCCCCCCceEEEEE-CCCCCHHHHHHHHH
Confidence            99886 77655 3445566555532 23456888888875 7 444432    223456899976 67889999999999


Q ss_pred             HHHHHHHHh
Q psy3048         343 EISHQSSEM  351 (367)
Q Consensus       343 ~l~~~~~~~  351 (367)
                      +|+++.+++
T Consensus       389 ~l~~~~~~~  397 (406)
T PRK13393        389 ALSEIWARL  397 (406)
T ss_pred             HHHHHHHhc
Confidence            999987764

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.75  E-value=1.6e-16  Score=166.31  Aligned_cols=258  Identities=14%  Similarity=0.080  Sum_probs=165.8

Q ss_pred             eEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+.....    +..|++++.++.+++  ++        .+++      ..+++.+ ++.+|.+.|+++|+
T Consensus       166 ~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~~--------~~~~------~~vlvq~-p~~~G~i~d~~~i~  228 (954)
T PRK05367        166 NRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--LD--------HDDV------FGVLLQY-PGTSGEVRDYTALI  228 (954)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC--CC--------cccE------EEEEEec-CCCCeeeccHHHHH
Confidence            47888999999987654    457999999987542  11        1111      2444444 57799999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccc-----cccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKW-----LLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~-----l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++||++|++++||+.+.+..+..+...   .   .+|+++.++|||     +++| ++|++++++.  +.+.+  .+..+
T Consensus       229 ~~ah~~Gal~~vda~~~Al~~l~~pge---~---GaDi~vgs~qkfg~P~g~GGP-~aGflavr~~--~~r~l--pgriv  297 (954)
T PRK05367        229 AAAHARGALVAVAADLLALTLLTPPGE---M---GADIAVGSAQRFGVPMGFGGP-HAAYFAVRDA--YKRSM--PGRIV  297 (954)
T ss_pred             HHHHHcCCEEEEEehhhhccCCCChhh---c---CCCEEEeeCcccCCCCCCCCC-CEEEEEECHH--HHhhC--CCCee
Confidence            999999999999996644333332211   2   459999999999     4444 6999999753  22211  12223


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccH-----HHHHHHHHHhhHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA-----LKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~g~~~~~~  256 (367)
                      +.....  .....|.+.             +.  .+.  +.++ +....++-...     .....++..+|.+|++++.+
T Consensus       298 G~s~d~--~g~~~~~la-------------lq--tRe--qhiR-rekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~  357 (954)
T PRK05367        298 GVSVDA--AGNPALRLA-------------LQ--TRE--QHIR-REKATSNICTAQVLLAVMASMYAVYHGPEGLKAIAR  357 (954)
T ss_pred             eeeccc--CCCcccccc-------------cc--ccc--cccc-ccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            221100  011112000             00  000  0000 11111111111     12222345679999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHH
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~ed  336 (367)
                      +...+++|+.++|++ .|+++..++.+..++++++.   ...++.++|.++|+.. .  . .....+|+|+ +.++|++|
T Consensus       358 ~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~~---~~~~i~~~l~~~gi~~-~--~-~~~~~l~is~-~e~~t~~d  428 (954)
T PRK05367        358 RVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVGG---DAAAVLARALAAGINL-R--R-VDDDHVGISL-DETTTRED  428 (954)
T ss_pred             HHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCCC---CHHHHHHHHHHCCcee-c--c-ccCCEEEEEe-cccCCHHH
Confidence            999999999999987 58998877777888888642   3678999999999542 1  1 1234799976 68899999


Q ss_pred             HHHHHHHHH
Q psy3048         337 VAFAWNEIS  345 (367)
Q Consensus       337 id~li~~l~  345 (367)
                      ||+++++|.
T Consensus       429 id~l~~~l~  437 (954)
T PRK05367        429 LAALLAVFG  437 (954)
T ss_pred             HHHHHHHHc
Confidence            999999997

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.74  E-value=6.7e-16  Score=147.20  Aligned_cols=253  Identities=17%  Similarity=0.085  Sum_probs=164.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -+|++++..|.+...++...|++++.++.     +|+++|++++++...  ....++++.++.+++|.+.|+++|.++|+
T Consensus       101 d~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~--~~~~~v~~~~~~~~~G~~~~~~~i~~l~~  173 (360)
T TIGR00858       101 DLILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNRG--ERRKLIVTDGVFSMDGDIAPLPQLVALAE  173 (360)
T ss_pred             CEEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHccc--CCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence            35677889999999999999999988764     489999999875420  11357777778889999999999999999


Q ss_pred             hcCcEEEEecccccccccCh-hhhhhhCCC--CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLP-EYAHLKRGL--EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++|+++++|++|+.+.+... .......++  ...|++..+.+|+++. .| |+++.+ ++...........+....   
T Consensus       174 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G~~~~~-~~~~~~~~~~~~~~~~~~---  247 (360)
T TIGR00858       174 RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-AYVAGS-QALIDYLINRARTLIFST---  247 (360)
T ss_pred             HcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-cEEEcC-HHHHHHHHHhCccceecC---
Confidence            99999999999975543211 000111122  1348888999999975 44 666553 333322110011110000   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                ....+...++.++++.+.  ..++..++..++.+++.+
T Consensus       248 ------------------------------------------~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~  283 (360)
T TIGR00858       248 ------------------------------------------ALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRA  283 (360)
T ss_pred             ------------------------------------------CCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHH
Confidence                                                      000011123334444322  235667888999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ ++++. ++..+.+++.++. .....++.++|.++|+ ++.+..    ..+..++|+++ +.+++++|+++++++
T Consensus       284 ~L~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~gI-~v~~~~~~~~~~~~~~iRis~-~~~~~~~~i~~~l~~  358 (360)
T TIGR00858       284 GLEAL-GFTLM-PSCTPIVPVIIGD-NASALALAEELQQQGI-FVGAIRPPTVPAGTSRLRLTL-SAAHTPGDIDRLAEA  358 (360)
T ss_pred             HHHHc-CCccC-CCCCCEEEEEeCC-HHHHHHHHHHHHHCCe-eEeeeCCCCCCCCCceEEEEE-cCCCCHHHHHHHHHh
Confidence            99886 67654 4456677777653 2335688999988874 443321    12346899976 567889999999988


Q ss_pred             HH
Q psy3048         344 IS  345 (367)
Q Consensus       344 l~  345 (367)
                      |+
T Consensus       359 l~  360 (360)
T TIGR00858       359 LK  360 (360)
T ss_pred             hC
Confidence            74

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK07324 transaminase; Validated

Probab=99.74  E-value=8.1e-16  Score=147.71  Aligned_cols=257  Identities=12%  Similarity=0.031  Sum_probs=162.7

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|+++..+|.++...++..|++++.++.+.  ++.+|+++|++++.+.+      .++++++++|+||.+.+   +++|+
T Consensus       106 ~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~------kli~i~~p~NPtG~~~~~~~l~~i~  179 (373)
T PRK07324        106 HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNT------KLICINNANNPTGALMDRAYLEEIV  179 (373)
T ss_pred             EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCC------cEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            466678889888888999999999999863  46789999998886655      48889999999999977   89999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++||+++++|++|....... ..... .....-.+.+.+..|.++. ...+|+++. +++.+...... ..+.    
T Consensus       180 ~~a~~~~~~ii~De~y~~l~~~~-~~~s~-~~~~~~~I~~~s~SK~~~~~G~RiG~i~~-~~~li~~~~~~-~~~~----  251 (373)
T PRK07324        180 EIARSVDAYVLSDEVYRPLDEDG-STPSI-ADLYEKGISTNSMSKTYSLPGIRVGWIAA-NEEVIDILRKY-RDYT----  251 (373)
T ss_pred             HHHHHCCCEEEEEccccccccCC-CCCCh-hhccCCEEEEecchhhcCCccceeEEEec-CHHHHHHHHHH-hCcE----
Confidence            99999999999999987643321 11110 0111113556678998874 456788877 33333322110 0000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                ..+...+.......++.. ...-+++..+...+..+.+
T Consensus       252 ------------------------------------------~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l  288 (373)
T PRK07324        252 ------------------------------------------MICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAIL  288 (373)
T ss_pred             ------------------------------------------EecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHH
Confidence                                                      000000111111122221 1223444455556677778


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .+.|++++++....|.......++++. .....++.++|.+ .|+ .+.++ .+..++++|+++..   +++.++..++.
T Consensus       289 ~~~l~~~~~~~~~~p~gg~~~~i~~~~-~~~~~~~~~~ll~~~gv-~v~pg~~F~~~~~iRis~~~---~~~~l~~~l~r  363 (373)
T PRK07324        289 DEWVAKEPRVSYVKPKAVSTSFVKLDV-DMPSEDFCLKLLKETGV-LLVPGNRFDLEGHVRIGYCC---DTETLKKGLKK  363 (373)
T ss_pred             HHHHhcCCCceEECCCceEEEEEEeCC-CCCHHHHHHHHHHhcCE-EEECccccCCCCeEEEEecC---CHHHHHHHHHH
Confidence            888888778877655443444455543 2235678888764 464 44443 33445699997743   58889999999


Q ss_pred             HHHHHHH
Q psy3048         344 ISHQSSE  350 (367)
Q Consensus       344 l~~~~~~  350 (367)
                      |++++++
T Consensus       364 l~~~l~~  370 (373)
T PRK07324        364 LSEFLRE  370 (373)
T ss_pred             HHHHHHh
Confidence            8888764

>KOG1359|consensus

Probab=99.74  E-value=2.7e-16  Score=138.63  Aligned_cols=258  Identities=14%  Similarity=0.123  Sum_probs=172.7

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.-.||.++.+|.|+.+++++..         ..+..|+-+|+..+.+..+..  ..+|+....-++.|.+.|+++|.++
T Consensus       150 pedAvfSDeLNhASIIdGirLck---------ry~h~dv~~l~~~l~~a~k~r--~klv~TDg~FSMDGdiaPl~ei~~L  218 (417)
T KOG1359|consen  150 PEDAVFSDELNHASIIDGIRLCK---------RYRHVDVFDLEHCLISACKMR--LKLVVTDGVFSMDGDIAPLEEISQL  218 (417)
T ss_pred             hhhhhhccccccchhhhhhHHHh---------hhccchhHHHHHHHHHhhhhe--EEEEEecceeccCCCcccHHHHHHH
Confidence            45667888899999888877653         346678899998888766532  2456666666788999999999999


Q ss_pred             HhhcCcEEEEecccccccccC-hhh-hhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhc-cCCccccccCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLL-PEY-AHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTF-FTDRVYLKHTD  185 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~-~~~-~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~-~~~~~yl~~~~  185 (367)
                      +++||.++++|+||+.+.+-- ... ...+.-..++|++.....|.+++.   ..-|+..+..+...+ +...+|+++..
T Consensus       219 a~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga---~GGyttgp~~li~llrqr~RpylFSns  295 (417)
T KOG1359|consen  219 AKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA---SGGYTTGPKPLISLLRQRSRPYLFSNS  295 (417)
T ss_pred             HHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC---CCCCccCChhHHHHHHhcCCceeecCC
Confidence            999999999999998876532 111 111122356799999999998843   222333333333333 56788888763


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      -     .+..                ..                     .+.+.+..+.     .-.+...+...+.+++
T Consensus       296 l-----ppav----------------V~---------------------~a~ka~dllm-----~s~~~i~~~~a~~qrf  328 (417)
T KOG1359|consen  296 L-----PPAV----------------VG---------------------MAAKAYDLLM-----VSSKEIQSRQANTQRF  328 (417)
T ss_pred             C-----Chhh----------------hh---------------------hhHHHHHHHH-----hhHHHHHHHHHHHHHH
Confidence            2     1000                00                     1122222221     1244555778888999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE---EeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII---KASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++.++.- ||.+....  +.++-.+.++.+.+..+.+.|+++|++.+.   |..+.+...+|+.++..+ ++||||++++
T Consensus       329 r~~me~a-GftIsg~~--hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaH-t~edid~~i~  404 (417)
T KOG1359|consen  329 REFMEAA-GFTISGAS--HPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAH-TEEDIDRLIE  404 (417)
T ss_pred             HHHHHhc-CceecCCC--CCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhc-CHHHHHHHHH
Confidence            9988774 99987643  222222335466777899999999966554   345578889999886555 5999999999


Q ss_pred             HHHHHHHHh
Q psy3048         343 EISHQSSEM  351 (367)
Q Consensus       343 ~l~~~~~~~  351 (367)
                      ++.++++-.
T Consensus       405 Af~~vgr~~  413 (417)
T KOG1359|consen  405 AFSEVGRFL  413 (417)
T ss_pred             HHHHHHHhh
Confidence            999987643

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.73  E-value=2.5e-16  Score=151.46  Aligned_cols=276  Identities=12%  Similarity=0.069  Sum_probs=173.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|++++.+|.+...++...|++++.++.+. ++.+|+++|++++.+.++      +|+.+   +++|...|+++|.++
T Consensus        73 Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~tk------av~~~---~~~G~~~d~~~i~~~  143 (379)
T PRK11658         73 GDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRTK------AIIPV---HYAGAPADLDAIRAI  143 (379)
T ss_pred             CCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCCe------EEEEe---CCCCCcCCHHHHHHH
Confidence            34577888999999999999999999999874 467999999999977653      55544   458999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |++||+++++|+||+.+....+..   .... ..++++++.+|++.++ ..|+++..+++...+...    +...+..  
T Consensus       144 a~~~gi~vi~D~a~a~g~~~~~~~---~g~~-g~~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~----~~~~G~~--  212 (379)
T PRK11658        144 GERYGIPVIEDAAHAVGTYYKGRH---IGAR-GTAIFSFHAIKNITCA-EGGLVVTDDDELADRLRS----LKFHGLG--  212 (379)
T ss_pred             HHHcCCeEEEECCCccCCeECCee---cCCC-CCEEEeCCCCCcCccc-CceEEEECCHHHHHHHHH----HHHcCCC--
Confidence            999999999999998654432211   1112 2378999999999764 344555555554433211    0001100  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                         ...+.  .+      .+      ...+.    .. ....+-++....+.+++.....++++++.++.+++++++.+.
T Consensus       213 ---~~~~~--~~------~~------~~~~~----~~-~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~  270 (379)
T PRK11658        213 ---VDAFD--RQ------TQ------GRAPQ----AE-VLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQA  270 (379)
T ss_pred             ---cchhh--hh------cc------cCCCc----ce-eeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00000  00      00      00000    00 001122234456777888888889999999999999999999


Q ss_pred             hcCCCCeEEeCCCC-----ceeEEEEEcCC--chHHHHHHHHHhccCcEE---EEEeEE----C--------------Ce
Q psy3048         269 VEKDDRFELVCPPS-----MGLVCFRLKGD--NDLTNQLYERLMSHKQIY---IIKASF----Q--------------GR  320 (367)
Q Consensus       269 L~~~~g~~~~~~~~-----~~~v~f~~~~~--~~~~~~l~~~L~~~g~~~---~~~~~~----~--------------~~  320 (367)
                      |++++...+..+..     .....++++..  ....+++.+.|.++|+..   ..+...    .              ..
T Consensus       271 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  350 (379)
T PRK11658        271 LADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSE  350 (379)
T ss_pred             hcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHh
Confidence            99886433322211     13445555421  123568888898887421   001000    0              01


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      ..+-+ +.++..+++|+++++++|+++.
T Consensus       351 ~~l~l-P~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        351 RICSL-PLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             CeEEc-cCCCCCCHHHHHHHHHHHHHHH
Confidence            23444 4577889999999999999864

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.73  E-value=6e-16  Score=149.49  Aligned_cols=261  Identities=12%  Similarity=0.045  Sum_probs=165.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .-.|++++..+......++..|++++.++.++++.+|+++|++++++.+      .+|++++++|+||.+.|   +++|+
T Consensus       113 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------klv~~~~p~NPtG~~~~~~~~~~i~  186 (389)
T PRK05957        113 GDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPKT------RAIVTISPNNPTGVVYPEALLRAVN  186 (389)
T ss_pred             CCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCc------eEEEEeCCCCCCCcCcCHHHHHHHH
Confidence            3456667777777777777889999999988788999999999987655      47788899999999976   89999


Q ss_pred             HHHhhcCcEEEEecccccccccChhh-hh-hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEY-AH-LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++||+++++|++|+-..+..... .. ...+...-.+++.+..|.++.| ..+|+++... ..++..... ..+...
T Consensus       187 ~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~~~~~~~~~-~~~~~~  264 (389)
T PRK05957        187 QICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI-HLLEAIKKI-QDTILI  264 (389)
T ss_pred             HHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH-HHHHHHHHH-Hhhccc
Confidence            99999999999999997554321111 10 0111111236667788988533 4589988743 323221100 000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAYLRKHISL  261 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~~~~~~~l  261 (367)
                      .                                              ..   .+...++...+  +...+++..++..+.
T Consensus       265 ~----------------------------------------------~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~~  295 (389)
T PRK05957        265 C----------------------------------------------PP---VVSQYAALGALQVGKSYCQQHLPEIAQV  295 (389)
T ss_pred             C----------------------------------------------CC---cHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            0                                              00   01222222222  223456666777888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCce-eEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEE---CCeeEEEEEecCCCCCHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMG-LVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASF---QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~-~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~---~~~~~lRi~~~~~~~~~ed  336 (367)
                      .+++.+.|++++++..+.++..+ .++++++. .....++.+.|.+ +|+ .+.++..   .+.+++|+++..  .++++
T Consensus       296 r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~-~~~~~~~~~~l~~~~gv-~v~pg~~f~~~~~~~iRis~~~--~~~~~  371 (389)
T PRK05957        296 RQILLKSLGQLQDRCTLHPANGAFYCFLKVNT-DLNDFELVKQLIREYRV-AVIPGTTFGMKNGCYLRIAYGA--LQKAT  371 (389)
T ss_pred             HHHHHHHHHhcCCCccccCCCeeEEEEEeCCC-CCChHHHHHHHHHHCCE-EEccchhhCCCCCCEEEEEEec--CCHHH
Confidence            88899999888774223344433 34455543 2335688888875 564 4554432   224589998743  36888


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3048         337 VAFAWNEISHQSSEM  351 (367)
Q Consensus       337 id~li~~l~~~~~~~  351 (367)
                      ++..++.|.+.++++
T Consensus       372 l~~~~~~l~~~~~~~  386 (389)
T PRK05957        372 AKEGIERLVQGLKTI  386 (389)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888877654

>PRK15029 arginine decarboxylase; Provisional

Probab=99.73  E-value=6.3e-16  Score=157.20  Aligned_cols=137  Identities=21%  Similarity=0.187  Sum_probs=109.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-----CCCcC-----HHHHHHHHHHHh--h--CCCccEEEEEecCCCc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-----NGVLR-----GDALLTAVKEDL--A--KGLIPCCLVATLGTTG   95 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-----~~~~d-----~~~L~~~l~~~~--~--~~~~~~~vv~~~~~t~   95 (367)
                      .-.|++++++|.|+..++.+.|+.++++++..     -+.++     ++.+++++++..  +  ++.+|..++++++ |+
T Consensus       245 gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY  323 (755)
T PRK15029        245 NDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TY  323 (755)
T ss_pred             CCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CC
Confidence            44788899999999999999999999997641     14455     999999997643  2  3345667888876 77


Q ss_pred             ccccCChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhC----CCCCcc-eeeeccccccccCCcceeEEEecc
Q psy3048          96 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKR----GLEYVD-SFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        96 ~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~----~~~~~D-~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      .|.+.|+++|+++||++|++++||+|||+...+.+.++.  .+.    ....+| +++-|.||.+.+-.+++++.+++.
T Consensus       324 ~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~  402 (755)
T PRK15029        324 DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_pred             cceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence            999999999999999999999999999998877765542  110    102468 889999999999999999999654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.73  E-value=2.5e-16  Score=151.16  Aligned_cols=244  Identities=16%  Similarity=0.161  Sum_probs=165.4

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+....    +...|++++.++.+     |++++++++++++      .+|++++++|++|.+.|+++|++
T Consensus        87 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~t------klv~le~psnptg~v~dl~~I~~  155 (378)
T TIGR01329        87 EIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPKT------KLVLLESPTNPLQKIVDIRKISE  155 (378)
T ss_pred             EEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCeeecHHHHHH
Confidence            466677788776543    44579999999864     8999999997655      48899999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|++++||++|+.+.... ...   .   .+|++++++|||+++|.+  .|+++++++...++..    .+.....
T Consensus       156 la~~~g~~vivD~a~~~~~~~~-~l~---~---g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~----~~~~~~G  224 (378)
T TIGR01329       156 MAHAQNALVVVDNTMMSPLLCN-PLE---L---GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVY----FLQNSTG  224 (378)
T ss_pred             HHHHcCCEEEEECCCcccccCC-hhh---c---CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHH----HHHHhcC
Confidence            9999999999999997654322 111   1   359999999999999877  8888886654333221    0110000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .                                              ....+..|  +...+.+.+..++++..+++..+
T Consensus       225 ~----------------------------------------------~~~~~~a~--l~~~~l~tl~~R~e~~~~na~~l  256 (378)
T TIGR01329       225 S----------------------------------------------GLAPFDCW--LLLRGIKTLAIRIEKQQENARAI  256 (378)
T ss_pred             C----------------------------------------------cCCHHHHH--HHHccCCCHHHHHHHHHHHHHHH
Confidence            0                                              00112222  22335566788888899999999


Q ss_pred             HHHhcCCCCe-EEeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccCcE---------EEEEe--EE
Q psy3048         266 ADLVEKDDRF-ELVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHKQI---------YIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~-~~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~---------~~~~~--~~  317 (367)
                      .+.|+++|.+ ++..|     |           ..++++|.+.+ .....++.+.|...+..         ...|.  .+
T Consensus       257 a~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~  335 (378)
T TIGR01329       257 AMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS-VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSH  335 (378)
T ss_pred             HHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC-HHHHHHHHHhCcCcccccCCCCCCceeeCCCcccc
Confidence            9999988876 33433     1           23789999943 33356788887543311         11111  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                                .  ..+.+|+|+.     -||++.+++.|++.++++
T Consensus       336 ~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       336 ASIPAEVREERGLPEDLVRLSVG-----IEDVDDLISDLDIAFVTA  376 (378)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhc
Confidence                      0  1468999874     368999999999988754

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.73  E-value=4.8e-16  Score=148.73  Aligned_cols=269  Identities=14%  Similarity=0.082  Sum_probs=168.8

Q ss_pred             cCceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          28 KSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .+.-.|+++..+..+...++...|+++++++++ +++.+|++++++++.+.++      .|+++|   ..|...|+++|.
T Consensus        63 ~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~------ai~~~h---~~G~~~d~~~i~  133 (363)
T PF01041_consen   63 GPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTK------AILVVH---LFGNPADMDAIR  133 (363)
T ss_dssp             GTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEE------EEEEE----GGGB---HHHHH
T ss_pred             CcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCcc------EEEEec---CCCCcccHHHHH
Confidence            345678888999999999999999999999998 7899999999999998884      666664   479999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|+++|++++.|+||+.+....+..-.   ..+.+-++++...|.+.++ ..|++++++++..++.......-..... 
T Consensus       134 ~~~~~~~i~lIeD~a~a~g~~~~g~~~G---~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~-  208 (363)
T PF01041_consen  134 AIARKHGIPLIEDAAQAFGARYKGRPVG---SFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDA-  208 (363)
T ss_dssp             HHHHHTT-EEEEE-TTTTT-EETTEETT---SSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSE-
T ss_pred             HHHHHcCCcEEEccccccCceeCCEecc---CCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccc-
Confidence            9999999999999999887654322111   1222344455556998554 4577888776654443211100000000 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           ...|                             ......+.++++-.+.+++...+.+.++++.++.+++++++.
T Consensus       209 -----~~~~-----------------------------~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~  254 (363)
T PF01041_consen  209 -----FRRY-----------------------------RHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYR  254 (363)
T ss_dssp             -----CSTT-----------------------------EESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             -----cccc-----------------------------cccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                 0000                             000002233445566666666677788999999999999999


Q ss_pred             HHhcCCCCeEEeCCC-C-----ceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEe---------------EEC------
Q psy3048         267 DLVEKDDRFELVCPP-S-----MGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKA---------------SFQ------  318 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-~-----~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~---------------~~~------  318 (367)
                      +.|..++++..+..+ .     ...+.+.+++.. ...+++.+.|.++|+-.....               ...      
T Consensus       255 ~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~a  334 (363)
T PF01041_consen  255 EALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNA  334 (363)
T ss_dssp             HHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHH
T ss_pred             HHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHH
Confidence            999999998776532 1     223455565421 135689999998884321100               001      


Q ss_pred             ---CeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         319 ---GRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       319 ---~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                         ....+-+ +.++..+++|+++++++|+
T Consensus       335 e~l~~r~l~L-P~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  335 ERLSQRLLSL-PIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             HHHHHHEEEE-EHSTTSCHHHHHHHHHHHH
T ss_pred             HHHHhCeEEC-cCCCCCCHHHHHHHhhccC
Confidence               0225666 6788999999999999875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.73  E-value=2.1e-17  Score=153.63  Aligned_cols=133  Identities=17%  Similarity=0.084  Sum_probs=104.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCC------CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN------GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~------~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      +.-.|++++.+|.|+..++...|+++++++++.+      +.+|+++|++++++..+    +.+|+++++ |++|.+.|+
T Consensus        98 ~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~----~k~v~l~~p-~~~G~~~dl  172 (294)
T cd00615          98 PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPD----AKAAVITNP-TYYGICYNL  172 (294)
T ss_pred             CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCC----ceEEEEECC-CCCCEecCH
Confidence            3457778899999999999999999999987522      47999999999976332    457778876 789999999


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      ++|+++||++|++++||+||+++..+.+..+.... ...+|+++.++||++.++.++|++++++.
T Consensus       173 ~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~-~~~~div~~S~hK~l~g~~~~~~l~~~~~  236 (294)
T cd00615         173 RKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAA-MAGADIVVQSTHKTLPALTQGSMIHVKGD  236 (294)
T ss_pred             HHHHHHHHhcCCeEEEECcchhhhccCcccCcchh-hcCCcEEEEchhcccchHhHHHHHHhCCC
Confidence            99999999999999999999875433332211111 12469999999999988888888888654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.73  E-value=1.2e-15  Score=148.11  Aligned_cols=263  Identities=10%  Similarity=0.035  Sum_probs=169.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-----CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-----DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---  101 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-----~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---  101 (367)
                      .-.|++.+.++......++..|++++.|+++     +++.+|+++|++++++.+      .+|++++++|+||.+.+   
T Consensus       126 Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~------k~v~l~~P~NPTG~~~s~e~  199 (405)
T PRK06207        126 GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGV------RVFLFSNPNNPAGVVYSAEE  199 (405)
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcC------eEEEECCCCCCCCcCCCHHH
Confidence            3456667789988888899999999999875     258899999999987655      47889999999999965   


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccChhhhhhhC-CC-CCcceeeeccccccccC-CcceeEEEecchhhhhhccCCc
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR-GL-EYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      +++|+++|++||+++++|++|+-..+.......... .. ..--+++.+..|.++.| ..+|+++.. +.......... 
T Consensus       200 l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~-~~l~~~~~~~~-  277 (405)
T PRK06207        200 IAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGS-PAIIDRMEKLQ-  277 (405)
T ss_pred             HHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcC-HHHHHHHHHHH-
Confidence            788899999999999999999865442211110000 01 01126777789999844 558888753 33332211000 


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      .+....                                              ...+....+..++.. +...+++..++.
T Consensus       278 ~~~~~~----------------------------------------------~~~~~q~a~~~~l~~-~~~~~~~~~~~~  310 (405)
T PRK06207        278 AIVSLR----------------------------------------------AAGYSQAVLRTWFSE-PDGWMKDRIARH  310 (405)
T ss_pred             hHhccC----------------------------------------------CCHHHHHHHHHHHhC-cHHHHHHHHHHH
Confidence            000000                                              000111222222221 223356677777


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-E--CCeeEEEEEecCCCCCH
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-F--QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~  334 (367)
                      .+.++++.+.|++++++.+..|.....++++++.......++.+.|. +.|+ .+.++. +  .+.+++|+++..   +.
T Consensus       311 ~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV-~v~pG~~F~~~~~~~~Ris~~~---~~  386 (405)
T PRK06207        311 QAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGV-IVTPGTEFSPHTADSIRLNFSQ---DH  386 (405)
T ss_pred             HHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCE-EEeCchHhCCCCCCeEEEEecC---CH
Confidence            78888899999888787765444455666676532223567888887 4564 444433 2  235699998753   58


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy3048         335 CDVAFAWNEISHQSSEM  351 (367)
Q Consensus       335 edid~li~~l~~~~~~~  351 (367)
                      ++++..++.|.+++++.
T Consensus       387 ~~l~~al~rl~~~l~~~  403 (405)
T PRK06207        387 AAAVAAAERIAQLIERY  403 (405)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            89999999999887654

>PRK05968 hypothetical protein; Provisional

Probab=99.72  E-value=5.6e-16  Score=149.32  Aligned_cols=243  Identities=17%  Similarity=0.209  Sum_probs=160.0

Q ss_pred             EEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+..    ..+...|+++++++.+     |++++++++ +.+      .+|.+.+++++++.+.|+++|.+
T Consensus       104 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i-~~t------klV~ie~pt~~~~~~~dl~~i~~  171 (389)
T PRK05968        104 RIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKAL-PGA------KLLYLESPTSWVFELQDVAALAA  171 (389)
T ss_pred             EEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhc-ccC------CEEEEECCCCCCCcHHHHHHHHH
Confidence            3555666777643    4555679999998754     889999887 334      37888889999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||+||+++++|++|+.+....+ .   ..+   +|+++.+++|++.+|.+  .|+++ .+++.+++......++++.. 
T Consensus       172 la~~~gi~vivD~a~a~~~~~~p-~---~~g---~Divv~S~tK~l~g~~~~~gG~i~-~~~~~~~~l~~~~~~~~g~~-  242 (389)
T PRK05968        172 LAKRHGVVTMIDNSWASPVFQRP-I---TLG---VDLVIHSASKYLGGHSDTVAGVVA-GSKEHIARINAEAYPYLGAK-  242 (389)
T ss_pred             HHHHcCCEEEEECCCcchhccCc-h---hcC---CcEEEeeccccccCCCCeEEEEEE-ECHHHHHHHHHHHHHhCCCC-
Confidence            99999999999999976543221 1   123   49999999999998865  45555 44443332211000111100 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                      ...+..+..  ..+.+.+..++++..++++++
T Consensus       243 ------------------------------------------------~~~~~A~~~--l~~L~tl~~r~~~~~~~a~~l  272 (389)
T PRK05968        243 ------------------------------------------------LSPFEAWLL--LRGLRTLPLRMKAHEASALEI  272 (389)
T ss_pred             ------------------------------------------------CChHHHHHH--HcccCcHHHHHHHHHHHHHHH
Confidence                                                            011222322  334556788889999999999


Q ss_pred             HHHhcCCCCeEEeCCC------------CceeEEEEEcCCchHHHHHHHHHhccCcEE--------EEEeE---------
Q psy3048         266 ADLVEKDDRFELVCPP------------SMGLVCFRLKGDNDLTNQLYERLMSHKQIY--------IIKAS---------  316 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~--------~~~~~---------  316 (367)
                      .+.|+++|++..+..|            ..++++|.+.+ .....++.++|...+...        +.|..         
T Consensus       273 a~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~  351 (389)
T PRK05968        273 ARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE-GIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQP  351 (389)
T ss_pred             HHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC-HHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCH
Confidence            9999999998655422            13599999874 344567888876544110        11210         


Q ss_pred             ----ECC--eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 ----FQG--RPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 ----~~~--~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                          ..|  ++.+|+|+. .    ||.+.+++.|++.++++
T Consensus       352 ~~~~~~gi~~~liR~SvG-l----E~~~dl~~dl~~al~~~  387 (389)
T PRK05968        352 NSAARFGVSPRSVRLHVG-L----EGTEALWADLEQALAAA  387 (389)
T ss_pred             HHHHhcCCCCCeEEEEec-c----CCHHHHHHHHHHHHHHh
Confidence                011  468999874 3    56777888888877654

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.72  E-value=9.2e-16  Score=147.77  Aligned_cols=260  Identities=12%  Similarity=0.067  Sum_probs=162.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      -.|++++.++......+...|++++.++.+.   ++.+|+++|++++.+.+      .++++++++|++|.+   +++++
T Consensus       108 d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NptG~~~~~~~~~~  181 (380)
T PRK06225        108 DNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENT------RLIYLIDPLNPLGSSYTEEEIKE  181 (380)
T ss_pred             CEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCc------eEEEEeCCCCCCCcCCCHHHHHH
Confidence            3466677788877788888999999998632   46899999999887654      377778899999997   45999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      |+++|++||+++++|++++.+......... ..  ....+...+.+|+++.| ..+|+++.++ ..+.....    +.. 
T Consensus       182 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~--~~~~i~~~s~SK~~g~~G~RiG~i~~~~-~l~~~~~~----~~~-  252 (380)
T PRK06225        182 FAEIARDNDAFLLHDCTYRDFAREHTLAAE-YA--PEHTVTSYSFSKIFGMAGLRIGAVVATP-DLIEVVKS----IVI-  252 (380)
T ss_pred             HHHHHHHCCcEEEEehhHHHHhccCCchhh-cC--CCCEEEEeechhhcCCccceeEEEecCH-HHHHHHHH----HHh-
Confidence            999999999999999998643211110000 00  12245666778999533 3478888743 33322110    000 


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ..         +                               .   ............+.. ..+.+++..+...+..+
T Consensus       253 ~~---------~-------------------------------~---~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~  288 (380)
T PRK06225        253 ND---------L-------------------------------G---TNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQK  288 (380)
T ss_pred             cc---------c-------------------------------C---CCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence            00         0                               0   000111112222222 12223444444556677


Q ss_pred             HHHHHhcCCCCeEEe-CCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELV-CPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|++++|+.+. .++..+.+.+.+........++.++|.++|+ .+.++..    .+..++|+++..   ++++++
T Consensus       289 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi-~v~~g~~~~~~~~~~~iR~s~~~---~~e~l~  364 (380)
T PRK06225        289 LIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKI-FVRQGTYTSKRFGDRYIRVSFSI---PREQVE  364 (380)
T ss_pred             HHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCE-EEcCCcccCcCCCCceEEEEeCC---CHHHHH
Confidence            788888887775432 3445566666664322335688988988884 4444322    235699997642   689999


Q ss_pred             HHHHHHHHHHHHhhC
Q psy3048         339 FAWNEISHQSSEMNL  353 (367)
Q Consensus       339 ~li~~l~~~~~~~~~  353 (367)
                      ++++.|++++++++.
T Consensus       365 ~~~~~l~~~~~~~~~  379 (380)
T PRK06225        365 VFCEEFPDVVETLRT  379 (380)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999887654

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.72  E-value=1.1e-15  Score=146.15  Aligned_cols=244  Identities=13%  Similarity=0.090  Sum_probs=157.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++..+..+...++..|++++.++.++++.+|+++|++++.+.+      .++++++++|++|.+.|.++|.++|+
T Consensus       112 d~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~~~~p~nptG~~~~~~~l~~l~~  185 (361)
T PRK00950        112 DEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKT------KVIFLCTPNNPTGNLIPEEDIRKILE  185 (361)
T ss_pred             CEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCC------CEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            356667777767777788899999999987778999999999886544      37777899999999999999999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ++|+++++|++|+.+.  ............. -++..+..|.++.| ..+|+++... ............          
T Consensus       186 ~~~~~li~De~y~~~~--~~~~~~~~~~~~~-vi~~~S~SK~~g~~GlRiG~~~~~~-~~~~~~~~~~~~----------  251 (361)
T PRK00950        186 STDALVFVDEAYVEFA--EYDYTPLALEYDN-LIIGRTFSKVFGLAGLRIGYGFVPE-WLIDYYMRAKTP----------  251 (361)
T ss_pred             HCCcEEEEECchhhhC--ccchHHHHHhcCC-EEEEEeehHhhcCchhhcchhcCCH-HHHHHHHHhcCC----------
Confidence            9999999999997543  1111111111111 25556789988744 4577776532 222211100000          


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~la~~l~~~  268 (367)
                           +                               .      ...+....++..+.. +.+++..++..+..+++.+.
T Consensus       252 -----~-------------------------------~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~  289 (361)
T PRK00950        252 -----F-------------------------------S------LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNE  289 (361)
T ss_pred             -----C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhh
Confidence                 0                               0      001222223333322 23566666666677777666


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eEE--CCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-ASF--QGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~--~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      |.    +.+ .++..+.+++++.+  ....++.+.|.++|+ .+.+ ..+  .++.++|+++.    +.+|+++++++|+
T Consensus       290 l~----~~~-~~~~~~~i~~~~~~--~~~~~~~~~l~~~gv-~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~  357 (361)
T PRK00950        290 LP----FKV-YPSEANFVLVDVTP--MTAKEFCEELLKRGV-IVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILK  357 (361)
T ss_pred             cC----eeE-CCCcceEEEEECCC--CCHHHHHHHHHHCCE-EEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHH
Confidence            65    444 34556667777632  346789999988884 4433 222  23568999764    5789999999999


Q ss_pred             HHH
Q psy3048         346 HQS  348 (367)
Q Consensus       346 ~~~  348 (367)
                      +++
T Consensus       358 ~il  360 (361)
T PRK00950        358 EIV  360 (361)
T ss_pred             HHh
Confidence            875

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.72  E-value=5.9e-16  Score=161.47  Aligned_cols=260  Identities=11%  Similarity=0.018  Sum_probs=166.8

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++..|.+....++    -.|++++.++.+..   +      ...+.       +..++++..+.+|.+.|+++|
T Consensus       192 ~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~~~-------v~~vlvq~P~~~G~v~dv~~I  255 (993)
T PLN02414        192 KKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSSGD-------VCGVLVQYPATDGEVLDYAEF  255 (993)
T ss_pred             CCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------cccCc-------eEEEEEecCCCCeEEcCHHHH
Confidence            3568889999999876654    36899999987421   1      11111       233335455679999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-----ceeEEEecchhhhhhccCCccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-----CSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-----~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +++||++|++++| +|+..+......  ....   .||+++.++|||+ +|.|     +|++++++..  .+.+.  +..
T Consensus       256 ~~~ah~~GaL~iV-aad~lal~~l~~--pge~---GADi~vgsgqKwg-~P~G~GGP~aGflavr~~~--~r~~P--gri  324 (993)
T PLN02414        256 VKNAHANGVKVVM-ATDLLALTMLKP--PGEW---GADIVVGSAQRFG-VPMGYGGPHAAFLATSQEY--KRLMP--GRI  324 (993)
T ss_pred             HHHHHHcCCEEEE-EECHHHhcCCCC--Hhhc---cCcEEEECCCccc-cCCCCCCCCeeEEEECHHH--HhhCC--Ccc
Confidence            9999999999999 888776655421  1111   4599999999998 3444     8999997642  22111  122


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH-----HHhhHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL-----RSYGLKGLQAYL  255 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~g~~~~~  255 (367)
                      ++.....  .....|.+             .+.  .+...   ..+....++-....++.+.+     ..+|..|++++.
T Consensus       325 VG~s~d~--~g~~~~~l-------------~Lq--tReqh---iRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia  384 (993)
T PLN02414        325 IGVSVDS--SGKPALRM-------------AMQ--TREQH---IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA  384 (993)
T ss_pred             cCcccCC--CCCccccc-------------ccc--cccch---hhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            2221110  00111100             000  00000   01111112211222333333     356889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      ++..+++.|++++|.+. |+++..++.+.+++|+++.    +.++.++|.++|+ .+...  . ...+|+|+ +.++|++
T Consensus       385 ~ri~~la~~l~~~L~~~-G~~~~~~~~f~~vt~~~~~----~~~v~~~L~~~gI-~l~~~--~-~~~lrvs~-~e~~T~e  454 (993)
T PLN02414        385 QRVHGLAGVFAAGLKKL-GFQVQSLPFFDTVKVKCSD----ADAIADAAAKVGI-NLRVV--D-ANTVTVSF-DETTTLE  454 (993)
T ss_pred             HHHHHHHHHHHHHHhhc-CCccCCCCCcCeEEEecCC----HHHHHHHHHHCCC-eeEEe--c-CCeEEEEe-eccCCHH
Confidence            99999999999999884 8998878888999998742    4789999999985 33221  1 34699976 7899999


Q ss_pred             HHHHHHHHHHH
Q psy3048         336 DVAFAWNEISH  346 (367)
Q Consensus       336 did~li~~l~~  346 (367)
                      |||+|+++|..
T Consensus       455 dId~L~~~l~~  465 (993)
T PLN02414        455 DVDKLFKVFAG  465 (993)
T ss_pred             HHHHHHHHHcc
Confidence            99999999964

>PLN02509 cystathionine beta-lyase

Probab=99.72  E-value=8.2e-16  Score=150.09  Aligned_cols=242  Identities=14%  Similarity=0.199  Sum_probs=162.0

Q ss_pred             EEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+...    .+...|++++.++..     |++++++++++.+      .+|++++++|++|.+.|+++|++
T Consensus       173 ~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~-----d~e~l~~ai~~~T------klV~lesPsNPtG~i~Dl~~I~~  241 (464)
T PLN02509        173 EIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----NLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKIAE  241 (464)
T ss_pred             EEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC-----CHHHHHHhCCcCC------eEEEEECCCCCCCCHHHHHHHHH
Confidence            45567788887653    344578988888643     7899999997665      48899999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||+||+++++|++|+.+.+..+ .     + ..+|+++++++||+.++.+  .|+++++++....+..     .+... 
T Consensus       242 lAk~~g~~lIVD~A~a~~~~~~p-l-----~-~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~-----~~~~~-  308 (464)
T PLN02509        242 MAHAQGALVLVDNSIMSPVLSRP-L-----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVY-----FLQNS-  308 (464)
T ss_pred             HHHHcCCEEEEECCccccccCCh-h-----h-cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHH-----HHHHh-
Confidence            99999999999999977654221 1     1 1469999999999998876  6777765543222110     00000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .                                            +..+..+..|..  ..+.+-+..++++..++++++
T Consensus       309 ~--------------------------------------------g~~l~p~~A~l~--lr~L~tL~~R~~r~~~nA~~l  342 (464)
T PLN02509        309 E--------------------------------------------GSGLAPFDCWLC--LRGIKTMALRIEKQQENARKI  342 (464)
T ss_pred             c--------------------------------------------CCCcCHHHHHHH--HhhhhhHHHHHHHHHHHHHHH
Confidence            0                                            000112333333  335667788999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~  317 (367)
                      .+.|+++|.++ +..|     |           ..++++|.+. ..+....+.+.|.--  +       .....|.  .+
T Consensus       343 a~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~-~~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh  421 (464)
T PLN02509        343 AMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH  421 (464)
T ss_pred             HHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC-CHHHHHHHHHcCCcceEcccCCCCCceeeCCccccc
Confidence            99999999874 5544     1           2468899883 234445666655411  1       0011111  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                                .  ..+.+|+|+.     -||++.+++.|++.++
T Consensus       422 ~~~~~~~~~~~Gi~~~liRlSvG-----lE~~~DLi~Dl~~Al~  460 (464)
T PLN02509        422 ASIPAEVREARGLTEDLVRISAG-----IEDVDDLISDLDIAFR  460 (464)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHc
Confidence                      1  1468999774     3689999999988865

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.72  E-value=1.6e-15  Score=148.09  Aligned_cols=269  Identities=10%  Similarity=0.028  Sum_probs=171.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++++.++..+...+...|++++.+++.  +++.+|+++|++++++.+      .++++++++|+||.+.|   +++|
T Consensus       142 d~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~P~NPtG~v~~~~~l~~i  215 (430)
T PLN00145        142 ANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENT------VAMVIINPNNPCGSVYSYEHLAKI  215 (430)
T ss_pred             CEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCc------eEEEEeCCCCCCCCCCCHHHHHHH
Confidence            357777888888888888899999998863  468899999999887765      48889999999999976   8889


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeecccccc-ccCCcceeEEEecchh-hhhh--ccCCcc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWL-LTNHDCSAMWVKNANH-LTNT--FFTDRV  179 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l-~~p~g~g~l~~~~~~~-~~~~--~~~~~~  179 (367)
                      +++|++||+++++|++|+.+.+....+...  +... .--+...+..|.+ .....+|+++..++.. +...  ......
T Consensus       216 ~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~  294 (430)
T PLN00145        216 AETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEV-APVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRN  294 (430)
T ss_pred             HHHHHHcCCEEEEeccchhhccCCCCccchhhhccc-CcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHH
Confidence            999999999999999997654422111110  1111 1135555678884 4448899988754322 1110  000000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      +....                                            .....+.+.++...|+.-..+.+++..++.+
T Consensus       295 ~~~~~--------------------------------------------~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~  330 (430)
T PLN00145        295 YLNIS--------------------------------------------TDPATFVQGAIPQIIANTKEEFFTKTLGLLK  330 (430)
T ss_pred             Hhccc--------------------------------------------CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            00000                                            0000011122223333212345777788888


Q ss_pred             HHHHHHHHHhcCCCCeEEeC-CCCceeEEEEEcCC---c-hHHHHHHHHHhccCcEEEEE-eEECCeeEEEEEecCCCCC
Q psy3048         260 SLAKKFADLVEKDDRFELVC-PPSMGLVCFRLKGD---N-DLTNQLYERLMSHKQIYIIK-ASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~---~-~~~~~l~~~L~~~g~~~~~~-~~~~~~~~lRi~~~~~~~~  333 (367)
                      +.++++.+.|++++|+.+.. |.....+.++++..   + ....+++.+|.++..+.+.| ..+...+++|+++..   +
T Consensus       331 ~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~---~  407 (430)
T PLN00145        331 ETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI---D  407 (430)
T ss_pred             HHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC---C
Confidence            88999999999988887653 44555556655421   1 12446776666543344444 344446799998752   6


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q psy3048         334 QCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~~  353 (367)
                      .++++..++.|++++++..+
T Consensus       408 ~~~l~~al~rl~~~~~~~~~  427 (430)
T PLN00145        408 PPSLEDGLERLKSFCLRHAK  427 (430)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            88899999999998877654

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.71  E-value=2.2e-15  Score=145.26  Aligned_cols=258  Identities=12%  Similarity=0.055  Sum_probs=164.2

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      +|++++..|.+...++...|++++.++     .+|++++++.+++...  ....+|++.+..+++|.+.|+++|.++|++
T Consensus       119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~  191 (385)
T TIGR01825       119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAER  191 (385)
T ss_pred             EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHH
Confidence            666788899999888888888887664     4689999998876431  113577778888999999999999999999


Q ss_pred             cCcEEEEecccccccccCh-hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLP-EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~-~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ||+++++|++|+.+.+... .......++ ...|++..+.+|+++.+ | |+++. +++..+.......+|....     
T Consensus       192 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g-G~~~~-~~~~~~~~~~~~~~~~~~~-----  263 (385)
T TIGR01825       192 YGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV-G-GYAAG-HKELIEYLKNRARPFLFST-----  263 (385)
T ss_pred             hCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC-C-CEEec-CHHHHHHHHHhCccccccC-----
Confidence            9999999999976544210 000000111 24588899999999653 3 55544 3333322111111111000     


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                                                              ........++.++++.+..  ..+..++..++.+++.+.|
T Consensus       264 ----------------------------------------~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L  301 (385)
T TIGR01825       264 ----------------------------------------AQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGL  301 (385)
T ss_pred             ----------------------------------------CCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence                                                    0000112333444443322  1245566778889999999


Q ss_pred             cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         270 EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       270 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      +++ |+++.. +..+.+.+.+.. .....++++.|.++|+. +.+..+    .+..++|+++ +.+++++|+++++++|+
T Consensus       302 ~~~-g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~-v~~~~~~~~~~~~~~iRi~~-~~~~~~e~i~~~~~~l~  376 (385)
T TIGR01825       302 GKL-GYDTGG-SETPITPVVIGD-EKAAQEFSRRLFDEGIF-AQSIVFPTVPRGTARIRNIP-TAEHTKDDLDQALDAYE  376 (385)
T ss_pred             HHc-CCCCCC-CCCCEEEEEECC-HHHHHHHHHHHHHCCcE-EcccCCCCCCCCCceEEEEE-cCCCCHHHHHHHHHHHH
Confidence            886 777654 334455555432 22356788999888753 432211    2346899965 56789999999999999


Q ss_pred             HHHHHh
Q psy3048         346 HQSSEM  351 (367)
Q Consensus       346 ~~~~~~  351 (367)
                      ++++++
T Consensus       377 ~~~~~~  382 (385)
T TIGR01825       377 KVGKEL  382 (385)
T ss_pred             HHHHHh
Confidence            988754

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.71  E-value=2e-15  Score=146.63  Aligned_cols=264  Identities=16%  Similarity=0.033  Sum_probs=171.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++.+.++......++..|++++.++.++  ++.+|+++|++++.+.+      .+|+++.|+||||.+-+   +++
T Consensus       130 gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~nP~NPTG~v~s~e~l~~  203 (410)
T PRK06290        130 GDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKA------KLLYLNYPNNPTGAVATKEFYEE  203 (410)
T ss_pred             CCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccc------eEEEEECCCCCCCcCCCHHHHHH
Confidence            34566677888888888889999999999964  47789999998886544      48888899999999966   688


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||+++++|++|+...+....... .+.+....+++..+..|.++ .+..+|+++.. ++.+....... .+..
T Consensus       204 l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~-~~l~~~l~~~~-~~~~  281 (410)
T PRK06290        204 VVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGN-ELIVKAFATVK-DNND  281 (410)
T ss_pred             HHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeC-HHHHHHHHHHH-hccc
Confidence            888899999999999999865432111000 01111223688888999995 34567887763 33232111000 0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                              ........+..+++.  .+.+++..++..+..
T Consensus       282 ~~----------------------------------------------~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~  313 (410)
T PRK06290        282 SG----------------------------------------------QFIAIQKAGIYALDH--PEITEKIREKYSRRL  313 (410)
T ss_pred             cC----------------------------------------------CcHHHHHHHHHHhhC--cHHHHHHHHHHHHHH
Confidence            00                                              000011111222221  233566667778888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeE-EEEEcCCc------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLV-CFRLKGDN------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v-~f~~~~~~------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      +++.+.|++. |+.+.. |+.+.. ++++++..      ....++.+.|.++|.+.+.+.... .+++||+++.+--+++
T Consensus       314 ~~l~~~L~~~-g~~~~~-p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~-~~~lRi~~~~~~~~~~  390 (410)
T PRK06290        314 DKLVKILNEV-GFKAEM-PGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA-GHFLRFSVTFEAKDEE  390 (410)
T ss_pred             HHHHHHHHhC-CCeecC-CCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc-cCeEEEEEEccccccc
Confidence            8999999887 777654 333443 34655311      235689999999886655443222 2589999987777899


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy3048         336 DVAFAWNEISHQSSEMN  352 (367)
Q Consensus       336 did~li~~l~~~~~~~~  352 (367)
                      +.++++++|++.+.++.
T Consensus       391 ~~~~~~~~l~~~~~~~~  407 (410)
T PRK06290        391 EEDRILEEIKRRLSDVE  407 (410)
T ss_pred             chhHHHHHHHHHHhhcc
Confidence            99999999999987764

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.71  E-value=1.3e-15  Score=146.17  Aligned_cols=247  Identities=15%  Similarity=0.165  Sum_probs=162.3

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+.....    ...|+++++++.     .|++++++++++++      .+|.+++++|++|.+.|+++|.+
T Consensus        94 ~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~t------klV~lesP~NPtG~v~dl~~I~~  162 (388)
T PRK08861         94 LIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKKP------KLILLETPSNPLVRVVDIAELCQ  162 (388)
T ss_pred             EEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcCC------eEEEEECCCCCCCcccCHHHHHH
Confidence            4556667777654432    234677777753     48999999987765      48889999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|+++|+++++|++|+.+.+..+ ..     . .+|+++.++|||+++|.+  .|++..++++..++... ...++    
T Consensus       163 la~~~gi~vIvDea~~~~~~~~p-l~-----~-GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~-~~~~~----  230 (388)
T PRK08861        163 KAKAVGALVAVDNTFLTPVLQKP-LE-----L-GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW-WGNCI----  230 (388)
T ss_pred             HHHHcCCEEEEECCccccccCCC-cc-----c-CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH-HHhcc----
Confidence            99999999999999986644321 11     1 369999999999999876  45555554433222100 00000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +.....+..|.  ...|.+-+.-+++++.+.+..+
T Consensus       231 ---------------------------------------------G~~~~p~~a~l--~~rgl~Tl~lR~~~~~~~a~~~  263 (388)
T PRK08861        231 ---------------------------------------------GATGTPFDSYM--TLRGIRTLGARMRVHEESAQQI  263 (388)
T ss_pred             ---------------------------------------------CCCCChHHHHH--HHhcCCCHHHHHHHHHHHHHHH
Confidence                                                         00012234443  3346677888999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--~~  317 (367)
                      .+.|+++|.+. |..|     |           ..++++|.+.+..+...++.+.|.--.         .....|.  .+
T Consensus       264 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h  343 (388)
T PRK08861        264 LAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTH  343 (388)
T ss_pred             HHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccc
Confidence            99999999875 4444     1           236889998642333445666543211         0111110  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                                .  ..+.+|+|+.     -||++.+++.|++.++.+.+
T Consensus       344 ~~~~~~~~~~~gi~~~liRlsvG-----lE~~~dli~Dl~~al~~~~~  386 (388)
T PRK08861        344 RAMGEEALAEAGVSQQLLRLSVG-----LEDAQDLIADLDQAFAKAAE  386 (388)
T ss_pred             cccCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHHHh
Confidence                      1  1458999874     36788889999888876643

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.71  E-value=1e-15  Score=148.87  Aligned_cols=275  Identities=15%  Similarity=0.183  Sum_probs=167.1

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+....+    ...|+++++++++     |+++|+++++++++      +|++.+++|++|.+.|+++|++
T Consensus       105 ~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~Tk------lV~~e~~~np~g~v~Di~~I~~  173 (433)
T PRK08134        105 HIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPNTR------LLFGETLGNPGLEVLDIPTVAA  173 (433)
T ss_pred             EEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCCCe------EEEEECCCcccCcccCHHHHHH
Confidence            5777788888765554    3379999999874     89999999988774      7888899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhh-hh--hc-cCCccccc
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHL-TN--TF-FTDRVYLK  182 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~-~~--~~-~~~~~yl~  182 (367)
                      +||++|++++||++|+.+.+..+ ..   .   .+|++++|+|||++++.. .|.+++...... ..  .+ ...++...
T Consensus       174 la~~~gi~livD~t~a~~~~~~p-l~---~---GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~  246 (433)
T PRK08134        174 IAHEAGVPLLVDSTFTTPYLLRP-FE---H---GADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAG  246 (433)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-hh---c---CCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCccc
Confidence            99999999999999987665332 11   1   459999999999986632 566655322110 00  00 00011100


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....   .....+...           .++.. .+      .......+.....+..|  +...+.+.+..++++..+++
T Consensus       247 ~~g~---~~~~~~~~~-----------~~~~~-~~------~~~~~~~G~~ls~~~A~--l~~~gL~tl~~R~~~~~~nA  303 (433)
T PRK08134        247 FHGM---VFAEESTVA-----------AFLLR-AR------REGLRDFGACLSPMNAW--QLLQGIETLPLRMERHVANT  303 (433)
T ss_pred             cccc---chhhccchh-----------HHHHH-HH------HHHHHhcCCCCCHHHHH--HHhcCCCcHHHHHHHHHHHH
Confidence            0000   000000000           00000 00      00000011112223333  34456777899999999999


Q ss_pred             HHHHHHhcCCCCeE-EeCC-----C------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe
Q psy3048         263 KKFADLVEKDDRFE-LVCP-----P------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA  315 (367)
Q Consensus       263 ~~l~~~L~~~~g~~-~~~~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~  315 (367)
                      ..+.+.|+++|++. +..|     |            ..++++|.+.+......++.+.|.--.         .+.+.|.
T Consensus       304 ~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~  383 (433)
T PRK08134        304 RKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPA  383 (433)
T ss_pred             HHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCC
Confidence            99999999999875 3332     1            246889998653333456666654211         0111111


Q ss_pred             -----EE-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 -----SF-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 -----~~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                           ..       .  ..+.+|+|+.     -||.+.+++.|++.++.+.
T Consensus       384 ~~~h~~~~~~~~~~~Gi~~~liRlsvG-----lE~~~dli~dl~~Al~~~~  429 (433)
T PRK08134        384 STTHFRMDAAALAAAGIGEGTIRLSIG-----LEDADDLIDDLKRALKAAE  429 (433)
T ss_pred             ccCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence                 00       1  1458999874     3678889999998887644

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.71  E-value=3e-15  Score=142.96  Aligned_cols=246  Identities=12%  Similarity=0.078  Sum_probs=158.5

Q ss_pred             cCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHHHHh
Q psy3048          36 SDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGPICQ  110 (367)
Q Consensus        36 s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~l~~  110 (367)
                      ....+..+...++..|++++.++.++  ++.+| +++++.+.+.+      .+|++++++|+||.+-+   +++|+++|+
T Consensus       100 ~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~------k~v~l~~p~NPTG~~~~~~~~~~i~~~a~  172 (356)
T PRK08056        100 VTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDL------DCLFLCTPNNPTGLLPERQLLQAIAERCK  172 (356)
T ss_pred             eCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCC------CEEEEeCCcCCCCCCCCHHHHHHHHHHHH
Confidence            34566677778888999999999863  35555 45555554433      47778999999999977   888999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ++|+++++|++|..+..........+... ...+++.+.+|+++ ....+|+++..++..+......    .   .    
T Consensus       173 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~----~---~----  240 (356)
T PRK08056        173 SLNIALILDEAFIDFIPDETGFIPQLADN-PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQ----Q---M----  240 (356)
T ss_pred             hcCCEEEEecchhccCCcchHHHHHhccC-CCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh----C---C----
Confidence            99999999999865433221111112222 23678899999999 5578899877544333221100    0   0    


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~~l~~~  268 (367)
                          .+                               .      ...+...++...+ +.+...+..++..+..+++.+.
T Consensus       241 ----~~-------------------------------~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~  279 (356)
T PRK08056        241 ----PW-------------------------------S------INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQA  279 (356)
T ss_pred             ----CC-------------------------------c------hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence                00                               0      0012222222222 2333555566778888999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECC--eeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQG--RPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~--~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      |++++++.+. ++..+.+.++++. +  ..++.+.|.++|+....+..+.+  .+++||++.    +.++.++++++|++
T Consensus       280 L~~~~~~~~~-~~~~~~~~~~~~~-~--~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~~l~~  351 (356)
T PRK08056        280 LCALPLLTVW-PGRANYLFLRCER-P--DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR----SAAENERLLAALRN  351 (356)
T ss_pred             HhcCCCcEEc-CCCCcEEEEEcCC-C--hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc----CHHHHHHHHHHHHH
Confidence            9888888765 4555666666643 2  45788888888854333332322  469999764    57899999999988


Q ss_pred             HHH
Q psy3048         347 QSS  349 (367)
Q Consensus       347 ~~~  349 (367)
                      +.+
T Consensus       352 ~~~  354 (356)
T PRK08056        352 VLT  354 (356)
T ss_pred             HHc
Confidence            743

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.71  E-value=9.3e-16  Score=147.76  Aligned_cols=244  Identities=15%  Similarity=0.161  Sum_probs=158.9

Q ss_pred             EEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|........    ..|+++..++.     .|++++++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus       102 ~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~t------klV~lesp~NptG~v~dl~~I~~  170 (386)
T PRK06767        102 HIICSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPNT------KLIFVETPINPTMKLIDLKQVIR  170 (386)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcCc------eEEEEeCCCCCCceecCHHHHHH
Confidence            45666777766554433    24666665544     38899999987655      48889999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|+++++|++|+.+....+ .   ..   .+|+++.+.+|++.++.+  .|+++.++ +.+.+........++.  
T Consensus       171 la~~~g~~vivD~a~a~~~~~~p-l---~~---g~Div~~S~sK~l~g~g~~~gG~v~~~~-~~i~~~~~~~~~~~g~--  240 (386)
T PRK06767        171 VAKRNGLLVIVDNTFCSPYLQRP-L---EL---GCDAVVHSATKYIGGHGDVVAGVTICKT-RALAEKIRPMRKDIGG--  240 (386)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-h---hc---CCcEEEecCcceecCCCCceeEEEEeCh-HHHHHHHHHHHHHhCC--
Confidence            99999999999999975443221 1   11   359999999999987654  46666543 3332211000000000  


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                     ....+..|+.++  +.+-+..++++..++++++
T Consensus       241 -----------------------------------------------~~~~~~a~l~~~--~L~tl~~r~~~~~~~a~~l  271 (386)
T PRK06767        241 -----------------------------------------------IMAPFDAWLLLR--GLKTLAVRMDRHCDNAEKI  271 (386)
T ss_pred             -----------------------------------------------CCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHH
Confidence                                                           011123333333  3345567788899999999


Q ss_pred             HHHhcCCCCeEEeC-CC----------CceeEEEEEcCCchHHHHHHHHHhccCcE---------EEEEe--E---E---
Q psy3048         266 ADLVEKDDRFELVC-PP----------SMGLVCFRLKGDNDLTNQLYERLMSHKQI---------YIIKA--S---F---  317 (367)
Q Consensus       266 ~~~L~~~~g~~~~~-~~----------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~---------~~~~~--~---~---  317 (367)
                      .+.|+++|+++.+. |.          ..++++|.+.+......++.++|...+..         ...|.  .   .   
T Consensus       272 a~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~  351 (386)
T PRK06767        272 VSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAE  351 (386)
T ss_pred             HHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHH
Confidence            99999999988543 31          34789999875334456788887644311         01110  0   0   


Q ss_pred             ----C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         318 ----Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       318 ----~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                          .  ..+.+|+|+.     -||.+.+++.|++.++.
T Consensus       352 ~~~~~gi~~~l~R~svG-----lE~~~dl~~dl~~al~~  385 (386)
T PRK06767        352 LRQEMGIYDNLIRLSVG-----LESWEDIVSDLEQALKK  385 (386)
T ss_pred             HHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence                0  2468999774     36899999999888763

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.71  E-value=1.9e-15  Score=144.58  Aligned_cols=244  Identities=15%  Similarity=0.159  Sum_probs=164.4

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.++...+    ...|+++++++..     |++++++++++++      .+|.+.+++|++|.+.||++|++
T Consensus       103 ~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~-----d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~  171 (395)
T PRK08114        103 HVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL-----IGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVA  171 (395)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHH
Confidence            4667778887877665    3469999998753     7899999998776      48999999999999999999999


Q ss_pred             HHhhcC--cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC--cceeEEEecchhhhhhccCCcccccc
Q psy3048         108 ICQEYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH--DCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       108 l~~~~g--i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +||++|  ++++||++++.+.+ .+..+   .|   +|+++.++|||++++.  ++|+++. +++..+....  ..+   
T Consensus       172 ia~~~g~g~~lvVDnT~a~p~~-~~pl~---~G---aDivv~S~tKyl~Ghsdv~~G~v~~-~~~~~~~l~~--~~~---  238 (395)
T PRK08114        172 AVRSVNPDAVIMIDNTWAAGVL-FKALD---FG---IDISIQAGTKYLVGHSDAMIGTAVA-NARCWEQLRE--NSY---  238 (395)
T ss_pred             HHHHhCCCCEEEEECCCccccc-cCHHH---cC---CcEEEEcCcccccCCCcceeEEEEc-CHHHHHHHHH--HHH---
Confidence            999984  99999999988655 33332   24   5999999999999995  5665543 3332221100  000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                   ..|....+...|..  ..|.+-+.-+++++.+.+.
T Consensus       239 ---------------------------------------------~~G~~~~p~~a~l~--~rgl~TL~lR~~~~~~na~  271 (395)
T PRK08114        239 ---------------------------------------------LMGQMVDADTAYMT--SRGLRTLGVRLRQHEESSL  271 (395)
T ss_pred             ---------------------------------------------hccCCCCHHHHHHH--HcCCCcHHHHHHHHHHHHH
Confidence                                                         00111223444533  3466777888999999999


Q ss_pred             HHHHHhcCCCCeE-EeCCC----------------CceeEEEEEcCC--chHHHHHHHHHhc--cC-------cEEE--E
Q psy3048         264 KFADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGD--NDLTNQLYERLMS--HK-------QIYI--I  313 (367)
Q Consensus       264 ~l~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~--~~~~~~l~~~L~~--~g-------~~~~--~  313 (367)
                      .+.+.|+++|.++ +..|.                ..++++|.+++.  .+...++++.|.-  .+       ....  .
T Consensus       272 ~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~  351 (395)
T PRK08114        272 KVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILANQ  351 (395)
T ss_pred             HHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceeccCC
Confidence            9999999999875 55441                246899998642  2233455555432  11       0111  0


Q ss_pred             EeE--E--------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         314 KAS--F--------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       314 ~~~--~--------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +..  .        ...+.+|+|+.     -||++.+++.|++.++.+
T Consensus       352 ~~~~~~~~~~~~~~~~~~liRlSvG-----lEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        352 PEEIAAIRPAGEVDFTGTLIRLHIG-----LEDVDDLIADLAAGFARI  394 (395)
T ss_pred             chhhhccCChhHhcCCCCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence            100  0        11268999774     368999999999887653

>PLN02271 serine hydroxymethyltransferase

Probab=99.71  E-value=1.5e-15  Score=147.92  Aligned_cols=260  Identities=14%  Similarity=0.093  Sum_probs=160.5

Q ss_pred             HhCCcceEEEe--cC-CCCCcCHHHHHHHH-HHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccc
Q psy3048          48 IIGDVPVRQLR--SD-DNGVLRGDALLTAV-KEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA  123 (367)
Q Consensus        48 ~~~g~~v~~v~--~~-~~~~~d~~~L~~~l-~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~  123 (367)
                      ...|..+..++  ++ +++.+|.++|++.. ..+      |.+|++.+..++  ...|+++|.++|+++|+++++|+||.
T Consensus       265 s~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~r------PKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~  336 (586)
T PLN02271        265 SGASIFFESLPYKVNPQTGYIDYDKLEEKALDFR------PKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHI  336 (586)
T ss_pred             ccccceEEEEEcccccccCccCHHHHHHHhhhcC------CeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECccc
Confidence            44566555555  54 57999999999854 333      567777655444  66799999999999999999999999


Q ss_pred             cccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcc
Q psy3048         124 GSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK  203 (367)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~  203 (367)
                      .|.+..+.+..   .+..||++++++||||.+|.| |+++++++..  ...  .+........     ...+.+..-+..
T Consensus       337 aGLIa~g~~~s---P~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~--~g~~gs~s~~-----~~~~d~~~kI~~  403 (586)
T PLN02271        337 SGLVAAKECVN---PFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRK--QGMLLSHGDD-----NSHYDFEEKINF  403 (586)
T ss_pred             ccccccCcCCC---CCcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccc--cCCccccccc-----cccHHHHHHhhc
Confidence            99887654432   244689999999999999999 8878764311  000  0000000000     000000000000


Q ss_pred             cCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-C
Q psy3048         204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-P  281 (367)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~  281 (367)
                      .+ +|                  .++++... ...++..+++......+.++.++..++++.|.+.|.+. |++++.. .
T Consensus       404 aV-fP------------------glqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggT  463 (586)
T PLN02271        404 AV-FP------------------SLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGT  463 (586)
T ss_pred             cc-CC------------------ccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCC
Confidence            00 00                  11222211 23455566776656667888899999999999999886 9998763 3


Q ss_pred             CceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeE--ECCeeEEEEEe---cCCCCCHHHHHHHHHHHHHHHH
Q psy3048         282 SMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KAS--FQGRPFLRFVV---TSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       282 ~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~--~~~~~~lRi~~---~~~~~~~edid~li~~l~~~~~  349 (367)
                      +.+.+.+.+...........+.|...|+ .+-    |..  ...+..+|+..   +.....++|++.+.+.|.++++
T Consensus       464 dnHlvLvDl~~~g~~G~~ae~~Le~~~I-~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        464 DNHLLLWDLTTLGLTGKNYEKVCEMCHI-TLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CcceeeecCcccCCCHHHHHHHHHHcCe-EeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            5677777765432223455555665563 332    111  11245799843   3344567999998888888776

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.70  E-value=2.4e-15  Score=145.45  Aligned_cols=246  Identities=14%  Similarity=0.137  Sum_probs=159.5

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|...    ...+...|.+++.++.     .|+++|++++++.+      .+|++++++|++|.+.|+++|++
T Consensus       101 ~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~t------klV~l~~P~NPtG~v~dl~~I~~  169 (405)
T PRK08776        101 TLVVPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQSP------KLVLIETPSNPLLRITDLRFVIE  169 (405)
T ss_pred             EEEEccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcCC------eEEEEECCCCCCCccCCHHHHHH
Confidence            344556666653    3334446777777764     38899999987655      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|+++|+++++|++|+.+.... ...   .   .+|+++.|+||++++|.+  .|+++.++++..++...    +.... 
T Consensus       170 la~~~gi~vIvD~a~a~~~~~~-pl~---~---gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~----~~~~~-  237 (405)
T PRK08776        170 AAHKVGALTVVDNTFLSPALQK-PLE---F---GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW----WANAL-  237 (405)
T ss_pred             HHHHcCCEEEEECCCcccccCC-ccc---c---cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH----HHHhc-
Confidence            9999999999999997643321 111   1   359999999999998865  46666655543332110    00000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +.....+..|..+  .+.+.++.++++..+++..+
T Consensus       238 ---------------------------------------------g~~~s~~~a~l~~--~gl~tl~~r~~~~~~na~~l  270 (405)
T PRK08776        238 ---------------------------------------------GLTGSPFDAFLTL--RGLRTLDARLRVHQENADAI  270 (405)
T ss_pred             ---------------------------------------------CCCCCHHHHHHHH--hhhCcHHHHHHHHHHHHHHH
Confidence                                                         0001123444333  45667888999999999999


Q ss_pred             HHHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~  317 (367)
                      .+.|+++|.+. +..|.                ..++++|.+.+..+...++.+.|.--  +       .....|.  .+
T Consensus       271 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h  350 (405)
T PRK08776        271 AALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMTH  350 (405)
T ss_pred             HHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEccCCCCCceEEECCccccc
Confidence            99999999875 44331                23689999975333335666665421  1       1111111  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                                .  ..+.+|+|+.     -||++.+++.|++.++++.
T Consensus       351 ~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~al~~~~  392 (405)
T PRK08776        351 AAMTAEARAAAGISDGLLRLSVG-----IESAEDLLIDLRAGLARAE  392 (405)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHhH
Confidence                      0  1458999874     3678888888888777653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.70  E-value=6.5e-15  Score=142.95  Aligned_cols=267  Identities=10%  Similarity=0.031  Sum_probs=168.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.++..+...+...|++++.++.+  +++.+|++++++++.+.+      .++++++++|++|.+-   ++++
T Consensus       120 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~i~~p~NPtG~~~~~~~~~~  193 (403)
T TIGR01265       120 GANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKT------VAIVVINPSNPCGSVFSRDHLQK  193 (403)
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCc------cEEEEecCCCCCCCCCCHHHHHH
Confidence            3456777888888888888899999998874  357899999999886654      4788899999999995   4899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCC-Cc-ceeeeccccccccC-CcceeEEEecch-hhhh-hccCCcc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YV-DSFAFNAHKWLLTN-HDCSAMWVKNAN-HLTN-TFFTDRV  179 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-~~-D~~~~~~hK~l~~p-~g~g~l~~~~~~-~~~~-~~~~~~~  179 (367)
                      |.++|+++|+++++|++|+...+....... +..+. .. -+++.+..|.+..| ..+|+++..++. .+.. .......
T Consensus       194 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~  272 (403)
T TIGR01265       194 IAEVARKLGIPIIADEIYGHMVFGDAPFIP-MASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN  272 (403)
T ss_pred             HHHHHHHCCCEEEEEccccccccCCCCccc-hhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH
Confidence            999999999999999999865442211111 11111 11 25666789986555 678888875431 1111 0000000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      +....                                         +.   ...+....+..+++.....-+++..++..
T Consensus       273 ~~~~~-----------------------------------------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  308 (403)
T TIGR01265       273 LLQRI-----------------------------------------LG---PATIVQGALPDILENTPQEFFDGKISVLK  308 (403)
T ss_pred             Hhhhh-----------------------------------------cC---CChHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            00000                                         00   00011122222333222344666677778


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc----hHHHHHHHHHh-ccCcEEEEEeEECCeeEEEEEecCCCCCH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN----DLTNQLYERLM-SHKQIYIIKASFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~----~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~~~~~~~~~  334 (367)
                      +..+++.+.|+.++|+.+..|+....+.++++...    ....++.+.|. +.|+....+..+....++|+++..   .+
T Consensus       309 ~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~---~~  385 (403)
T TIGR01265       309 SNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITV---PE  385 (403)
T ss_pred             HHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecC---CH
Confidence            88888999999887887555556666677765310    12567877764 556443333333346799998753   47


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQSSE  350 (367)
Q Consensus       335 edid~li~~l~~~~~~  350 (367)
                      ++++..++.|.+++++
T Consensus       386 ~~l~~~l~~l~~~~~~  401 (403)
T TIGR01265       386 SMLEEACSRIKEFCER  401 (403)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8899998888888765

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.70  E-value=1.8e-15  Score=145.82  Aligned_cols=202  Identities=14%  Similarity=0.188  Sum_probs=135.6

Q ss_pred             EEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+..    ..++..|++++.++.+     |++++++++++.+      .+|++++++|++|.+.|+++|.+
T Consensus        94 ~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~t------klV~l~~p~NptG~~~dl~~I~~  162 (390)
T PRK08064         94 HVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPNT------KLFYVETPSNPLLKVTDIRGVVK  162 (390)
T ss_pred             EEEEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCcEeccHHHHHH
Confidence            4566777776433    4455689999999864     7899999987765      48889999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|+++++|++|+.+....+ ..   .   .+|+++.++|||+.++.|  .|++++++++..++...    +...  
T Consensus       163 la~~~g~~vvvD~a~~~~~~~~~-~~---~---g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~----~~~~--  229 (390)
T PRK08064        163 LAKAIGCLTFVDNTFLTPLLQKP-LD---L---GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF----LQNS--  229 (390)
T ss_pred             HHHHcCCEEEEECCCCcccccCc-hh---h---CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH----HHHh--
Confidence            99999999999999876543221 11   1   359999999999998887  47777765543332210    0000  


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                              |...    ..+...|..+  .+.+-+..++++..+.+..+
T Consensus       230 ----------------------------------------~g~~----~~~~~a~l~~--~gl~tl~~R~~~~~~~a~~l  263 (390)
T PRK08064        230 ----------------------------------------FGAV----LGVQDCWLVL--RGLKTLHVRLEHSSETANKI  263 (390)
T ss_pred             ----------------------------------------cCCC----CCHHHHHHHH--cccCcHHHHHHHHHHHHHHH
Confidence                                                    0000    0112223222  34445677888888999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHH
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERL  304 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L  304 (367)
                      .+.|+++|.+. +..|     |           ..++++|.+.+ ......+.+.|
T Consensus       264 a~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~f~~~l  318 (390)
T PRK08064        264 ALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS-EEAVRQFVSHV  318 (390)
T ss_pred             HHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC-HHHHHHHHHhC
Confidence            99999887653 3333     1           34689999864 23333455443

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.70  E-value=1.4e-15  Score=146.95  Aligned_cols=247  Identities=17%  Similarity=0.204  Sum_probs=161.4

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+....    +...|++++.++.     +|++++++++++.+      .+|++++++|++|.+.|+++|.+
T Consensus       106 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-----~d~e~l~~ai~~~t------klV~lesp~NptG~v~dl~~I~~  174 (398)
T PRK07504        106 HVVAARALFGSCRYVVETLLPRYGIESTLVDG-----LDLDNWEKAVRPNT------KVFFLESPTNPTLEVIDIAAVAK  174 (398)
T ss_pred             EEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcCc------eEEEEECCCCCCcEecCHHHHHH
Confidence            456666677664333    3456888888852     68999999997766      48999999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +|+++|+++++|++|+.+....+ ..   .   .+|+++.|+|||++++. ..|++++.+++.+.+.+.   .+...   
T Consensus       175 la~~~gi~lvvD~a~a~~~~~~~-~~---~---gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~~---  241 (398)
T PRK07504        175 IANQAGAKLVVDNVFATPLFQKP-LE---L---GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFRH---  241 (398)
T ss_pred             HHHHcCCEEEEECCccccccCCc-hh---h---CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHHH---
Confidence            99999999999999976544221 11   1   35999999999998753 355445544443322110   00000   


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                 .+.....+..+..+  .+.+-+..++++..++++++.
T Consensus       242 -------------------------------------------~g~~~s~~~A~~~l--~~L~tl~~R~~~~~~na~~la  276 (398)
T PRK07504        242 -------------------------------------------TGPSLSPFNAWTLL--KGLETLPVRVRQQTESAAAIA  276 (398)
T ss_pred             -------------------------------------------hCCCCCHHHHHHHH--hccchHHHHHHHHHHHHHHHH
Confidence                                                       00111223334333  356667888899999999999


Q ss_pred             HHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEe--EE-
Q psy3048         267 DLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKA--SF-  317 (367)
Q Consensus       267 ~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~--~~-  317 (367)
                      +.|+++|++. +..|     |           ..++++|.+.+..+...++.+.|.--..         ....|.  .+ 
T Consensus       277 ~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~  356 (398)
T PRK07504        277 DFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHK  356 (398)
T ss_pred             HHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcc
Confidence            9999999875 4443     1           1568999996533334466666532110         011110  00 


Q ss_pred             ---------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         318 ---------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       318 ---------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                               .  ..+.+|+|+.     -||.+.+++.|++.+++++
T Consensus       357 ~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        357 NLSPEARAELGISEGFLRLSAG-----LEDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             cCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence                     0  2468999774     3678889999998887653

>PLN00175 aminotransferase family protein; Provisional

Probab=99.70  E-value=2e-15  Score=146.91  Aligned_cols=261  Identities=11%  Similarity=0.054  Sum_probs=168.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .-.|++.+..|..+...++..|++++.|+.+ +++.+|+++|++++.+.+      .+|++++++|+||.+-   ++++|
T Consensus       139 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~------k~i~i~~p~NPtG~~~s~~~l~~l  212 (413)
T PLN00175        139 GDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKT------RAILINTPHNPTGKMFTREELELI  212 (413)
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCc------eEEEecCCCCCCCcCCCHHHHHHH
Confidence            3456667788988988999999999999986 458999999999987654      4778899999999984   67889


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++|++||+++++|++|....+..+... ..+.+...-.+++.+..|.++ ....+|+++... ..+..... ...+.  
T Consensus       213 ~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~-~l~~~l~~-~~~~~--  288 (413)
T PLN00175        213 ASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP-HLTWGVRQ-AHSFL--  288 (413)
T ss_pred             HHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH-HHHHHHHH-HHhhc--
Confidence            9999999999999999977654221110 011111112466678899997 446788888743 22221100 00000  


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                .+                               +   ...+....+..+|.. +...+++..++..+.++
T Consensus       289 ----------~~-------------------------------~---~s~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~  323 (413)
T PLN00175        289 ----------TF-------------------------------A---TATPMQWAAVAALRA-PESYYEELKRDYSAKKD  323 (413)
T ss_pred             ----------cC-------------------------------C---CCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence                      00                               0   000111222223322 23456777778888899


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-hHHHHHHHHHhc-cCcEEEEEeEE-----CCeeEEEEEecCCCCCHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMS-HKQIYIIKASF-----QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-~~~~~l~~~L~~-~g~~~~~~~~~-----~~~~~lRi~~~~~~~~~ed  336 (367)
                      ++.+.|++. |+.+..|.....+++++.+.+ ....++.+.|.+ .|+....++.+     .+..++|++++.   ++++
T Consensus       324 ~l~~~L~~~-g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~---~~e~  399 (413)
T PLN00175        324 ILVEGLKEV-GFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK---DEET  399 (413)
T ss_pred             HHHHHHHHC-CCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC---CHHH
Confidence            999999887 777665444344555553211 124678888865 47544433322     134699998753   6899


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQSS  349 (367)
Q Consensus       337 id~li~~l~~~~~  349 (367)
                      ++..++.|++.++
T Consensus       400 l~~~~~rL~~~~~  412 (413)
T PLN00175        400 LRAAVERMKTKLK  412 (413)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988765

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.70  E-value=2.3e-15  Score=144.37  Aligned_cols=272  Identities=11%  Similarity=0.137  Sum_probs=168.7

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.-.|++++.+|.+...++...|++++.++.+++ +.+|++++++++++.++      +|+.+   +++|...|+++|.+
T Consensus        70 pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk------~Iip~---~~~G~~~d~~~I~~  140 (376)
T TIGR02379        70 PGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTK------AIVPV---HYAGVACDMDTIMA  140 (376)
T ss_pred             CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCce------EEEEe---CCCCCccCHHHHHH
Confidence            3446777889999999999999999999999754 78999999999876553      55544   56899999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC-
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA-  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~-  186 (367)
                      +|++||+++++|+||+.+.......   ...+..+.++++...|.+......|++++.+++..++..    .+...+.. 
T Consensus       141 la~~~~i~vIeDaa~~~g~~~~~~~---~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~----~~~~~g~~~  213 (376)
T TIGR02379       141 LANKHQLFVIEDAAQGVMSTYKGRA---LGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAE----IIREKGTNR  213 (376)
T ss_pred             HHHHCCCEEEEECccccCCccCCcc---cCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHH----HHHHhCCCC
Confidence            9999999999999998765321110   111223345555555666654356778887665544331    11111100 


Q ss_pred             -CCC-CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         187 -PMN-TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       187 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                       ... .....|                             .+ ...+.++.+-.+.+++.....+.++++.++.++++++
T Consensus       214 ~~~~~~~~~~~-----------------------------~~-~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~  263 (376)
T TIGR02379       214 SQFFRGEVDKY-----------------------------TW-RDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQL  263 (376)
T ss_pred             ccccccCCCcc-----------------------------ee-eeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             000 000000                             00 0112223333444555444566788899999999999


Q ss_pred             HHHHhcCCC--C-eEEeC-CCC----ceeEEEEEcCCchHHHHHHHHHhccCcEEEE---EeE-------EC---C----
Q psy3048         265 FADLVEKDD--R-FELVC-PPS----MGLVCFRLKGDNDLTNQLYERLMSHKQIYII---KAS-------FQ---G----  319 (367)
Q Consensus       265 l~~~L~~~~--g-~~~~~-~~~----~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~---~~~-------~~---~----  319 (367)
                      +.+.|+.++  + +.+.. ++.    .....++++. ....+++.+.|.++|+..-.   +..       +.   +    
T Consensus       264 y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~  342 (376)
T TIGR02379       264 YQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKD-EDDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIY  342 (376)
T ss_pred             HHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChH
Confidence            999998764  2 23221 211    1233444432 12356889999988843110   100       00   0    


Q ss_pred             -----eeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         320 -----RPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       320 -----~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                           ...+.+ ++++..+++|+++++++|+++.
T Consensus       343 ~~~~~~~~l~L-P~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       343 TTKESERLVRL-PLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             HHHHHhceEEc-cCCCCCCHHHHHHHHHHHHHHh
Confidence                 224666 6788899999999999998863

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.70  E-value=4.5e-15  Score=145.53  Aligned_cols=270  Identities=16%  Similarity=0.121  Sum_probs=163.4

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--------C--CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc-
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--------N--GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-   97 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--------~--~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-   97 (367)
                      ++  |++++..+.+....+...|++++.+++++        +  |.+|+++|++++.+...  ..+.+|++++++|++| 
T Consensus       117 GD--Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG  192 (460)
T PRK13238        117 GD--VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGG  192 (460)
T ss_pred             CC--EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCC
Confidence            46  55565533344455778999999998852        2  45999999999975321  1135889999999998 


Q ss_pred             cc---CChhhHHHHHhhcCcEEEEecccccc-cccCh---------hhhhhh-CCCCCcceeeeccccccccCCcceeEE
Q psy3048          98 AF---DNLEELGPICQEYNIWLHVDAAYAGS-ALLLP---------EYAHLK-RGLEYVDSFAFNAHKWLLTNHDCSAMW  163 (367)
Q Consensus        98 ~i---~dl~~I~~l~~~~gi~l~vD~a~~~~-~~~~~---------~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~  163 (367)
                      .+   +++++|.++|++||++++.|+||... .++..         ...... .-.+.+|+++++++|.+.+|.| |+++
T Consensus       193 ~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~  271 (460)
T PRK13238        193 QPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLC  271 (460)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEE
Confidence            55   45789999999999999999988442 11111         000000 0014579999999999999876 7888


Q ss_pred             EecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHH
Q psy3048         164 VKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMT  242 (367)
Q Consensus       164 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (367)
                      .++.+.+.+.....  ....+                                         +...++... .+.++..+
T Consensus       272 ~~d~~l~~~~~~~~--~~~~g-----------------------------------------~~t~~g~~~~~~~Ala~~  308 (460)
T PRK13238        272 FRDEDLFTECRTLC--ILYEG-----------------------------------------FPTYGGLAGRDMEALAVG  308 (460)
T ss_pred             cChHHHHHHhhhcc--cccCC-----------------------------------------cccccCcHHHHHHHHHhh
Confidence            77655444321100  00000                                         000011001 11222223


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC------ch-HHHHHHHHHhccCcEEEEE-
Q psy3048         243 LRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD------ND-LTNQLYERLMSHKQIYIIK-  314 (367)
Q Consensus       243 l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~------~~-~~~~l~~~L~~~g~~~~~~-  314 (367)
                      ++....   +...++..+.+++|.+.|++. |+.+..|.....+...+...      .. ...+++..|.++..+...+ 
T Consensus       309 l~e~~~---~~~~~~~~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~  384 (460)
T PRK13238        309 LYEGMD---EDYLAYRIGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEI  384 (460)
T ss_pred             HHHhhC---hHHHHHHHHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecc
Confidence            332111   122333444578899999886 99988776655565554321      01 1356777777655444322 


Q ss_pred             eEE-------CC------eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         315 ASF-------QG------RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       315 ~~~-------~~------~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +.+       .+      ...+|++++-..-+.+++|.+.++|+++.++
T Consensus       385 ~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~  433 (460)
T PRK13238        385 GSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN  433 (460)
T ss_pred             cceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence            211       11      4799998865445799999999999998764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.70  E-value=2.5e-15  Score=143.96  Aligned_cols=249  Identities=9%  Similarity=-0.015  Sum_probs=165.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|..+...+...|++++.++. +++.+|++++++++++.+      .+|++++++|++|.+.|.++|.++++
T Consensus       109 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~------~~v~l~~p~nptG~~~~~~~l~~l~~  181 (367)
T PRK02731        109 DEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVTPRT------RLVFIANPNNPTGTYLPAEEVERFLA  181 (367)
T ss_pred             CEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhCCCC------cEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            45666777887777777889999999988 468899999999986543      47778999999999999999999998


Q ss_pred             hc--CcEEEEecccccccccCh---hhhhhhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccccccC
Q psy3048         111 EY--NIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       111 ~~--gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      .+  |+++++|++|..+.....   .... . +...-.+++.+..|.++. +..+|+++.++ +.++........     
T Consensus       182 ~~~~~~~li~De~y~~~~~~~~~~~~~~~-~-~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~-~~~~~l~~~~~~-----  253 (367)
T PRK02731        182 GVPPDVLVVLDEAYAEYVRRKDYEDGLEL-V-AKFPNVVVTRTFSKAYGLAGLRVGYGIAPP-EIIDALNRVRQP-----  253 (367)
T ss_pred             hCCCCcEEEEECcHHHhccCcCcccHHHH-H-hhcCCEEEEeeehHhhcCcccceeeeeCCH-HHHHHHHHccCC-----
Confidence            74  999999999875443111   1111 1 111113555677898753 35678888743 333221110000     


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~  263 (367)
                                +                               .      ...+...++.+.+. .+.+++..++..++.+
T Consensus       254 ----------~-------------------------------~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  286 (367)
T PRK02731        254 ----------F-------------------------------N------VNSLALAAAVAALDDDAFVEKSRALNAEGMA  286 (367)
T ss_pred             ----------C-------------------------------C------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                      0                               0      00123333333333 2346777777888888


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++.+.|++. |+.+. ++..+.++++++. ...+.++.++|.++|+ .+.+.. +..++++|++++    +.+|++++++
T Consensus       287 ~l~~~L~~~-g~~~~-~~~g~~~~i~~~~-~~~~~~~~~~L~~~gI-~v~~~~~~~~~~~iRis~~----~~~e~~~l~~  358 (367)
T PRK02731        287 WLTEFLAEL-GLEYI-PSVGNFILVDFDD-GKDAAEAYQALLKRGV-IVRPVAGYGLPNALRITIG----TEEENRRFLA  358 (367)
T ss_pred             HHHHHHHHC-CCccC-CCCceEEEEECCC-CCCHHHHHHHHHHCCE-EEEeCCCCCCCCeEEEecC----CHHHHHHHHH
Confidence            999999887 77664 4566777787743 2346789999988885 444332 222468999763    5889999999


Q ss_pred             HHHHHHH
Q psy3048         343 EISHQSS  349 (367)
Q Consensus       343 ~l~~~~~  349 (367)
                      +|+++++
T Consensus       359 aL~~~~~  365 (367)
T PRK02731        359 ALKEFLA  365 (367)
T ss_pred             HHHHHHh
Confidence            9999864

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.70  E-value=7.6e-16  Score=147.62  Aligned_cols=243  Identities=21%  Similarity=0.232  Sum_probs=159.4

Q ss_pred             eEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|+++...|.+....    +...|++++.++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|+
T Consensus        80 d~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~------~~v~~e~~~np~g~~~dl~~i~  148 (369)
T cd00614          80 DHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPET------KLVYVESPTNPTLKVVDIEAIA  148 (369)
T ss_pred             CEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCeecCHHHHH
Confidence            3567777888876543    44578899888765     6899999987644      4788899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||+||+++++|++|+.+.+.. ...   .   .+|+++.+.+|+++++..  .|+++.++.+..++.... ..++.. 
T Consensus       149 ~la~~~g~~livD~t~~~~~~~~-~~~---~---g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~~g~-  219 (369)
T cd00614         149 ELAHEHGALLVVDNTFATPYLQR-PLE---L---GADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFL-RLALGT-  219 (369)
T ss_pred             HHHHHcCCEEEEECCCcchhcCC-hhh---h---CCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHH-HHhhCC-
Confidence            99999999999999998765421 111   1   359999999999987643  566666443433322100 000000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                      .......++.++.  .+.+..++++..+++++
T Consensus       220 ------------------------------------------------~~~p~~a~~~l~~--l~tl~~r~~~~~~na~~  249 (369)
T cd00614         220 ------------------------------------------------ILSPFDAWLLLRG--LKTLPLRMERHSENALK  249 (369)
T ss_pred             ------------------------------------------------CCCHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence                                                            0112333443333  34566778889999999


Q ss_pred             HHHHhcCCCCeE-EeCC----------------CCceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--E
Q psy3048         265 FADLVEKDDRFE-LVCP----------------PSMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--S  316 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~----------------~~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--~  316 (367)
                      +.+.|+++|++. +..|                ...++++|.+.+..+...++.+.|.--.         ...+.+.  .
T Consensus       250 la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~  329 (369)
T cd00614         250 VAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMT  329 (369)
T ss_pred             HHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcccc
Confidence            999999998764 3333                1367899998643344456666554221         0011111  1


Q ss_pred             E----------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         317 F----------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       317 ~----------~~--~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      +          .|  ++.+|+|+.-     ||++.+++.|++.+
T Consensus       330 ~~~~~~~~~~~~g~~~~liR~svGl-----E~~~dl~~dl~~al  368 (369)
T cd00614         330 HSQLPPEERAAAGITPGLVRLSVGI-----EDVEDLIADLEQAL  368 (369)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHhh
Confidence            1          02  4689997742     78999999998864

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.70  E-value=1.1e-14  Score=140.46  Aligned_cols=265  Identities=12%  Similarity=0.059  Sum_probs=160.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhh--------CCCccEEEEEecCCCcccccCC
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLA--------KGLIPCCLVATLGTTGTCAFDN  101 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~--------~~~~~~~vv~~~~~t~~G~i~d  101 (367)
                      .-.|++++..|.++..++...+++++.++++     |++++++.++....        ......+|++..+.+++|.+.|
T Consensus        82 GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~  156 (392)
T PLN03227         82 GDLLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP  156 (392)
T ss_pred             CCEEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC
Confidence            3467789999999999988888888888764     45555554432211        0122467888888899999999


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccC-hhhhhh---hCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLL-PEYAHL---KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~-~~~~~~---~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      +++|.++|++||+++++|++|+.+.+.. ......   +.....+|+++.+.+|.++ |. .|++.. +.+.........
T Consensus       157 l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~-gg~v~~-~~~~~~~~~~~~  233 (392)
T PLN03227        157 LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV-GGMTVG-SEEVVDHQRLSG  233 (392)
T ss_pred             HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc-CcEEec-CHHHHHHHHHhC
Confidence            9999999999999999999997432210 000011   1112346999999999865 32 334443 333222110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                      ..+.+..                                            ... .+.+.+..+++....  ..+++.++
T Consensus       234 ~~~~~~~--------------------------------------------~~~-p~~~~aa~~al~~~~--~~~~~~~~  266 (392)
T PLN03227        234 SGYCFSA--------------------------------------------SAP-PFLAKADATATAGEL--AGPQLLNR  266 (392)
T ss_pred             cCccccC--------------------------------------------CCC-HHHHHHHHHHHHHHh--cCHHHHHH
Confidence            1111100                                            000 011122222232211  13456778


Q ss_pred             HHHHHHHHHHHhcCCCCeE----------EeCCCCceeEEEEEcCCchH---------HHHHHHHHhccCcEEEE-Ee--
Q psy3048         258 HISLAKKFADLVEKDDRFE----------LVCPPSMGLVCFRLKGDNDL---------TNQLYERLMSHKQIYII-KA--  315 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~----------~~~~~~~~~v~f~~~~~~~~---------~~~l~~~L~~~g~~~~~-~~--  315 (367)
                      .+++.+++++.|++. ++.          +...+..+++.+.+.+ +..         ..++.+.+.++|.+... +.  
T Consensus       267 l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~  344 (392)
T PLN03227        267 LHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSD-QEATRRTDETLILDQIAHHSLSEGVAVVSTGGHV  344 (392)
T ss_pred             HHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeCC-HHHhhhhhhhhHHHHHHHHHHHCCCEEEeccccc
Confidence            889999999999752 322          1222356677777743 221         24788889999964321 10  


Q ss_pred             ----EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 ----SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 ----~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                          ..-++..+|+++ +...|++|||++++.|+++++++.
T Consensus       345 ~~~~~~~P~~~iR~~~-~~~~t~eei~~~~~~l~~~~~~~~  384 (392)
T PLN03227        345 KKFLQLVPPPCLRVVA-NASHTREDIDKLLTVLGEAVEAIL  384 (392)
T ss_pred             CCcCCCCCCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence                112356899966 567789999999999999988764

>PRK07682 hypothetical protein; Validated

Probab=99.70  E-value=1.7e-15  Score=145.84  Aligned_cols=260  Identities=11%  Similarity=0.044  Sum_probs=167.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.+|..+...++..|.+++.++.+  +++.+|+++|++++.+.+      .+++++.++|+||.+-   ++++
T Consensus       105 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~~~s~~~~~~  178 (378)
T PRK07682        105 GDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKT------KAILLCSPNNPTGAVLNKSELEE  178 (378)
T ss_pred             CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCccc------EEEEEECCCCCcCcCcCHHHHHH
Confidence            3456677888888888888899999999875  357899999999887644      4777889999999984   5899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |+++|++||+++++|++|+.+.+..+... ..+.+...-.++..+..|.++.| ..+|+++... +.++..... ..+..
T Consensus       179 l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~-~~i~~l~~~-~~~~~  256 (378)
T PRK07682        179 IAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV-YFSEAMLKI-HQYSM  256 (378)
T ss_pred             HHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH-HHHHHHHHH-HHhhc
Confidence            99999999999999999986554211000 01112212257777889999743 4588888743 333221110 00000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAYLRKHIS  260 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~~~~~~~  260 (367)
                                                                 +.   ..   .+...++...+  +...+++..++..+
T Consensus       257 -------------------------------------------~~---~~---~~~q~a~~~~l~~~~~~~~~~~~~~~~  287 (378)
T PRK07682        257 -------------------------------------------MC---AP---TMAQFAALEALRAGNDDVIRMRDSYRK  287 (378)
T ss_pred             -------------------------------------------cC---CC---HHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence                                                       00   00   11222222222  23446777777888


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-E--CCeeEEEEEecCCCCCHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-F--QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~ed  336 (367)
                      .++++.+.|+++ |+++..|.....++..+.+......++.+.|. ++|+ .+.++. +  .+..++|+++..   ++++
T Consensus       288 ~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv-~v~pg~~f~~~~~~~iRis~~~---~~~~  362 (378)
T PRK07682        288 RRNFFVTSFNEI-GLTCHVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKV-AVVPGSVFGESGEGFIRCSYAT---SLEQ  362 (378)
T ss_pred             HHHHHHHHHHHC-CCccCCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCE-EEcCchhhCcCCCCeEEEEeCC---CHHH
Confidence            899999999987 77654443322333334321223567888876 5674 444432 2  235799998753   5899


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3048         337 VAFAWNEISHQSSEM  351 (367)
Q Consensus       337 id~li~~l~~~~~~~  351 (367)
                      ++..++.|++++++.
T Consensus       363 l~~~l~~l~~~l~~~  377 (378)
T PRK07682        363 LQEAMKRMKRFVENK  377 (378)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987653

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.70  E-value=8.8e-16  Score=146.80  Aligned_cols=258  Identities=17%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh---h
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL---E  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl---~  103 (367)
                      +.-.|++.+..|..+...++..|++++.++.+  .++.+|+++|++.+++...++..+.+++++.++|+||.+-+.   +
T Consensus        92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~  171 (363)
T PF00155_consen   92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELR  171 (363)
T ss_dssp             TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHH
T ss_pred             ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence            35568888899999999999999999999964  679999999999999865443234688899999999998555   5


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhh---hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYA---HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~---~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +|+++|++||+++++|++|+.+.+......   ..+..- .-.+++.+..|.++.| ..+|++++ ++............
T Consensus       172 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRvG~i~~-~~~~~~~l~~~~~~  249 (363)
T PF00155_consen  172 ELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDED-DNVIVVGSLSKSFGLPGLRVGYIVA-PPELIERLRRFQRS  249 (363)
T ss_dssp             HHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTT-STEEEEEESTTTTTSGGGTEEEEEE-EHHHHHHHHHHHHH
T ss_pred             chhhhhcccccceeeeeceeccccCCCccCccccccccc-ccceeeeeccccccccccccccccc-hhhhhhhhhhcccc
Confidence            555559999999999999988766532211   111111 1147888899988755 46888888 33333221100000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH--HHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL--KGLQAYLRK  257 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~~~  257 (367)
                      +.                                              .   .......+...+...+.  +.+++..++
T Consensus       250 ~~----------------------------------------------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (363)
T PF00155_consen  250 GL----------------------------------------------S---SSPMQAAAAAALSDPELVEKWLEELRER  280 (363)
T ss_dssp             TT----------------------------------------------S---SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc----------------------------------------------c---cchhhHHHHHhhhcccccccccccchhh
Confidence            00                                              0   00111122222222221  267788888


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCCchHHHHHHHHHhcc-CcEEEEEe-EECCeeEEEEEecCCCCCH
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCF-RLKGDNDLTNQLYERLMSH-KQIYIIKA-SFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~lRi~~~~~~~~~  334 (367)
                      ..+..+++.+.|+++ |+.+..++ .+.+.+ .+..  ....++.+.|.++ |+ .+.++ .+..+.++|+++  ...++
T Consensus       281 l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~L~~~~gi-~v~pg~~~~~~~~iRi~~--a~~~~  353 (363)
T PF00155_consen  281 LRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDP--NDAEELAQELLEEYGI-LVRPGSYFGVPGYIRISL--ASHSE  353 (363)
T ss_dssp             HHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESH--HHHHHHHHHHHHHHTE-EEEEGGGGTSTTEEEEEG--GCSCH
T ss_pred             HHHHHHHHHHHHHHh-hhheeecc-CccEEEEEccc--chHHHHHHHHHHhCCE-EEEecCCCCCCCEEEEEe--ccCCH
Confidence            999999999999888 89888665 454444 3432  2457899999988 74 44443 222366999976  34579


Q ss_pred             HHHHHHHHHH
Q psy3048         335 CDVAFAWNEI  344 (367)
Q Consensus       335 edid~li~~l  344 (367)
                      +++++++++|
T Consensus       354 e~~~~~~~~l  363 (363)
T PF00155_consen  354 EDLEEALERL  363 (363)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhC
Confidence            9999999876

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.70  E-value=9.7e-15  Score=139.15  Aligned_cols=245  Identities=11%  Similarity=0.048  Sum_probs=163.2

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      .|++++.++..+...++..|++++.++.++++.+|++++++++++ .+      .+|++++++|+||.+-+.+++.++|+
T Consensus       102 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~------k~v~l~~p~NPtG~~~~~~~l~~l~~  175 (351)
T PRK14807        102 VVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQP------KLVFLCNPNNPTGSVIEREDIIKIIE  175 (351)
T ss_pred             EEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCC------CEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            455667777777778888999999999887789999999999875 33      47777899999999999999999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      +++.++++|++|+...  ........... .-.++..+..|.++ ....+|+++.. ++...........          
T Consensus       176 ~~~~~~ivDe~y~~~~--~~~~~~~~~~~-~~vi~~~S~SK~~~~~GlRiG~~v~~-~~~~~~~~~~~~~----------  241 (351)
T PRK14807        176 KSRGIVVVDEAYFEFY--GNTIVDVINEF-ENLIVLRTLSKAFGLAGLRVGYAVAN-ENILKYLNLVKSP----------  241 (351)
T ss_pred             hCCCEEEEeCcchhhc--ccchHHHhhhC-CCEEEEecchHhcccchhceeeeecC-HHHHHHHHHccCC----------
Confidence            9899999999996532  11111111111 11466777899996 44678887753 3333221110000          


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                           +                               .      ...+...++.+.+....+++..++..+..+++.+.|
T Consensus       242 -----~-------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l  279 (351)
T PRK14807        242 -----Y-------------------------------N------INSLSQVIALKVLRTGVLKERVNYILNERERLIKEL  279 (351)
T ss_pred             -----C-------------------------------C------cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0                               0      001222233333333346666667777888888889


Q ss_pred             cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE--ECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         270 EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS--FQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       270 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ++++|+.+. ++..+.+.++++.    ..++.+.|.++|+. +.+..  .....++|+++.    +.++.++|+++|+++
T Consensus       280 ~~~~g~~~~-~~~~~~~~i~~~~----~~~~~~~l~~~gV~-v~~~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~  349 (351)
T PRK14807        280 SKIPGIKVY-PSKTNFILVKFKD----ADYVYQGLLERGIL-VRDFSKVEGLEGALRITVS----SCEANDYLINGLKEL  349 (351)
T ss_pred             HhCCCcEEC-cCCccEEEEEcCC----HHHHHHHHHHCCEE-EEECCCCCCCCCeEEEEcC----CHHHHHHHHHHHHHh
Confidence            888888764 4555555565542    56788888888854 43322  123568999764    478899999999875


Q ss_pred             H
Q psy3048         348 S  348 (367)
Q Consensus       348 ~  348 (367)
                      +
T Consensus       350 ~  350 (351)
T PRK14807        350 L  350 (351)
T ss_pred             h
Confidence            3

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.69  E-value=1.6e-14  Score=143.24  Aligned_cols=273  Identities=13%  Similarity=0.051  Sum_probs=163.6

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      +.-.|++.+.++......++..|++++.+++++  ++.+|+++|++++.+..+++..+.++++++++|+||.+-+   ++
T Consensus       162 ~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~  241 (481)
T PTZ00377        162 PSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME  241 (481)
T ss_pred             CCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHH
Confidence            344677788999999999999999999999863  4789999999999764333333567778899999999966   89


Q ss_pred             hHHHHHhhcCcEEEEecccccccccCh-h---hhhhhCCCC-C----cc-eeeeccccccc--cCCcceeEEEe--cchh
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLP-E---YAHLKRGLE-Y----VD-SFAFNAHKWLL--TNHDCSAMWVK--NANH  169 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~-~---~~~~~~~~~-~----~D-~~~~~~hK~l~--~p~g~g~l~~~--~~~~  169 (367)
                      +|+++|++||+++++|++|+-..+..+ .   ......++. .    .. ++..+..|.+.  .+..+|+++..  .++.
T Consensus       242 ~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~l  321 (481)
T PTZ00377        242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEV  321 (481)
T ss_pred             HHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHH
Confidence            999999999999999999976443111 1   111011110 0    01 34557899754  46778888763  3333


Q ss_pred             hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hh
Q psy3048         170 LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YG  247 (367)
Q Consensus       170 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~  247 (367)
                      +.........+..                                                ...+....+..++..  .+
T Consensus       322 i~~l~~~~~~~~~------------------------------------------------~~~~~Q~a~~~~l~~~~~~  353 (481)
T PTZ00377        322 REQIYKLASINLC------------------------------------------------SNVVGQLMTGLMCNPPREG  353 (481)
T ss_pred             HHHHHHHhheecC------------------------------------------------CChHHHHHHHHHhCCCCCC
Confidence            3222110000000                                                000111222222211  00


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCch-----------HHHHHH-HHHhccC
Q psy3048         248 -------LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDND-----------LTNQLY-ERLMSHK  308 (367)
Q Consensus       248 -------~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~-----------~~~~l~-~~L~~~g  308 (367)
                             .+.+++..++..+..+++.+.|++++|+.+..|.....++.++.....           ...+++ ..|.+.|
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~g  433 (481)
T PTZ00377        354 DASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTG  433 (481)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcC
Confidence                   111223333456777888899988888887655443344434421111           022333 3445566


Q ss_pred             cEEEEEeEEC---CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         309 QIYIIKASFQ---GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       309 ~~~~~~~~~~---~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +....++.+.   +..++|+++.   .++++++..++.|++++++.-
T Consensus       434 V~v~pG~~F~~~~~~~~~Rls~~---~~~e~l~~~l~rl~~~~~~~~  477 (481)
T PTZ00377        434 IVVVPGSGFGQKPGTYHFRITIL---PPEEQIEEMVKKIKEFHESFM  477 (481)
T ss_pred             EEEeCCcccCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHH
Confidence            5444333332   3459999874   468899999999999888654

>PRK08912 hypothetical protein; Provisional

Probab=99.69  E-value=4.6e-15  Score=143.22  Aligned_cols=260  Identities=11%  Similarity=-0.006  Sum_probs=165.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      .-.|++++.+|..+...++..|++++.++.++ ++.+|+++|++.+.+.+      .++++++++|+||.+.+   +++|
T Consensus       111 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~s~~~~~~i  184 (387)
T PRK08912        111 GDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRT------KAVLLNNPLNPAGKVFPREELALL  184 (387)
T ss_pred             CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCccc------eEEEEeCCCCCcCcccCHHHHHHH
Confidence            34677788899999999999999999999863 68899999999886544      47778899999999865   7779


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      .++|++||+++++|++|+...+.......  ...+....++++.+.+|.++.| ..+|+++... +......... ... 
T Consensus       185 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~~~~~l~~~~-~~~-  261 (387)
T PRK08912        185 AEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAP-PLLRVLAKAH-QFL-  261 (387)
T ss_pred             HHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCH-HHHHHHHHHH-hhc-
Confidence            99999999999999999754432111111  1112222368889999998733 5588888743 3222211000 000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                 .+                               +.  +. .....+..++.. ..+.+++..++..+..
T Consensus       262 -----------~~-------------------------------~~--~~-~~q~~~~~~l~~-~~~~~~~~~~~~~~~~  295 (387)
T PRK08912        262 -----------TF-------------------------------TT--PP-NLQAAVAYGLGK-PDDYFEGMRADLARSR  295 (387)
T ss_pred             -----------cc-------------------------------cC--Ch-HHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence                       00                               00  00 001111222221 2334566677788888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcC-C-chHHHHHHHHHh-ccCcEEEEEe-EE----CCeeEEEEEecCCCCCH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKG-D-NDLTNQLYERLM-SHKQIYIIKA-SF----QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~-~-~~~~~~l~~~L~-~~g~~~~~~~-~~----~~~~~lRi~~~~~~~~~  334 (367)
                      +++.+.|+++ |+++..+.....++++++. . .....++.+.|. ++|+ .+.++ .+    .+.+++|++++.   .+
T Consensus       296 ~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV-~v~pg~~f~~~~~~~~~iRl~~~~---~~  370 (387)
T PRK08912        296 DRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGV-AAIPVSAFYEEDPVTSVVRFCFAK---RD  370 (387)
T ss_pred             HHHHHHHHhC-CCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCE-EEecchhhCCCCCCCCEEEEEEeC---CH
Confidence            9999999887 7776544333345556643 1 123457888875 4564 44443 22    124699998864   47


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQSS  349 (367)
Q Consensus       335 edid~li~~l~~~~~  349 (367)
                      ++++..++.|++.++
T Consensus       371 ~~l~~~l~rl~~~l~  385 (387)
T PRK08912        371 ATLDEAVERLAAARR  385 (387)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889999988888755

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=2.3e-15  Score=146.36  Aligned_cols=277  Identities=14%  Similarity=0.150  Sum_probs=165.4

Q ss_pred             EEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+...    .+...|+++++++ +..   |+++++++++++++      +|++.++.|++|.+.||++|++
T Consensus       110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~tk------~V~~e~~~Np~~~v~di~~I~~  179 (437)
T PRK05613        110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNTK------AFFGETFANPQADVLDIPAVAE  179 (437)
T ss_pred             EEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccCe------EEEEECCCCCCCcccCHHHHHH
Confidence            57777889988743    3456799999997 222   89999999987764      6667788899999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhh---c-cCCccccc
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNT---F-FTDRVYLK  182 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~---~-~~~~~yl~  182 (367)
                      +||++|+.++||++++.+.... ..+   .|   +|++++|+|||++++ -+.|.+++.++......   . ..-+..+.
T Consensus       180 la~~~gi~livD~t~a~g~~~~-p~~---~G---aDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~  252 (437)
T PRK05613        180 VAHRNQVPLIVDNTIATAALVR-PLE---LG---ADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVT  252 (437)
T ss_pred             HHHHcCCeEEEECCCccccccC-hHH---hC---CCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCC
Confidence            9999999999999997765432 211   23   599999999999865 34566666432210000   0 00000010


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....   .... + ..++.     ..+......        ..+....|....++..|..  ..|.+-+..+++++.+.+
T Consensus       253 ~~~~---~~~~-~-~~~~~-----~~~~~~~~~--------~~~~~~~G~~~~p~~a~l~--~rgl~TL~lR~~~~~~nA  312 (437)
T PRK05613        253 PDPA---YHGL-K-YADLG-----APAFGLKAR--------AGLLRDTGATLSPFNAWVT--AQGLDTLSLRLERHNENA  312 (437)
T ss_pred             Cccc---cccc-c-ccccc-----hHHHHHHHH--------HHHHHhcCCCCCHHHHHHH--HcccCcHHHHHHHHHHHH
Confidence            0000   0000 0 00000     000000000        0011111222334455543  446778889999999999


Q ss_pred             HHHHHHhcCCCCeE-EeCC-----C-------C-----ceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEe
Q psy3048         263 KKFADLVEKDDRFE-LVCP-----P-------S-----MGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKA  315 (367)
Q Consensus       263 ~~l~~~L~~~~g~~-~~~~-----~-------~-----~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~  315 (367)
                      .++.+.|+++|.+. +..|     |       +     .++++|.+.+..+....+.+.|.--..         +...|.
T Consensus       313 ~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~  392 (437)
T PRK05613        313 IKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPA  392 (437)
T ss_pred             HHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCC
Confidence            99999999999874 4443     1       1     348899986533344566666542110         001111


Q ss_pred             --EE----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         316 --SF----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       316 --~~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                        .+          .  .++.+|+|+.     -||++.+++.|++.++.
T Consensus       393 ~~~h~~~~~~~~~~~Gi~~~liRlsvG-----lE~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        393 TTTHSQSDEAGLARAGITQATVRLSVG-----IEDIDDIIADLEGGFAA  436 (437)
T ss_pred             ccCCccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence              00          1  1468999774     36889999999988764

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.69  E-value=3.6e-15  Score=143.68  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=158.1

Q ss_pred             EEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+....+.    ..|++++.++.     .|+++|++++++++      .+|++++++|++|.+.|+++|++
T Consensus       102 ~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~t------klV~ie~p~NPtg~~~dl~~I~~  170 (388)
T PRK07811        102 HIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPRT------KLIWVETPTNPLLSITDIAALAE  170 (388)
T ss_pred             EEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcCC------eEEEEECCCCCcceecCHHHHHH
Confidence            46667788876554432    25777777764     38999999997765      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|+++++|++++.+....+ ..   .   .+|+++++.+|++++|.+  .|+++.+++....+..     ++....
T Consensus       171 la~~~gi~lIvD~a~a~~~~~~p-~~---~---gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~-----~~~~~~  238 (388)
T PRK07811        171 LAHDAGAKVVVDNTFASPYLQQP-LA---L---GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFA-----FLQNGA  238 (388)
T ss_pred             HHHHcCCEEEEECCCCccccCCc-hh---h---CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHH-----HHHHhc
Confidence            99999999999999986543221 11   1   359999999999998765  5777776554332211     010000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +.....+..|..+  .+.+-+..++++..++++.+
T Consensus       239 ---------------------------------------------g~~~s~~~a~l~~--~~L~tl~~R~~~~~~na~~l  271 (388)
T PRK07811        239 ---------------------------------------------GAVPGPFDAYLTL--RGLKTLAVRMDRHSENAEAV  271 (388)
T ss_pred             ---------------------------------------------CCCCCHHHHHHHH--hccCcHHHHHHHHHHHHHHH
Confidence                                                         0000112223333  33445777888889999999


Q ss_pred             HHHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~  317 (367)
                      .+.|+++|++. +..|.                ..++++|.+++......++.+.|.--  +       .+...+.  .+
T Consensus       272 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~  351 (388)
T PRK07811        272 AEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTH  351 (388)
T ss_pred             HHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCc
Confidence            99999999876 44331                13689999975333345666655321  1       0111111  00


Q ss_pred             -------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 -------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 -------~~--~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                             .|  ++.+|+|+.     -||.+.+++.|++.++
T Consensus       352 ~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~  387 (388)
T PRK07811        352 ASTAGSQLEVPDDLVRLSVG-----IEDVADLLADLEQALG  387 (388)
T ss_pred             ccCCHhhcCCCCCEEEEEeC-----CCCHHHHHHHHHHHhh
Confidence                   11  468999774     3578888888888764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.69  E-value=4.5e-15  Score=143.86  Aligned_cols=257  Identities=11%  Similarity=0.028  Sum_probs=165.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|..+...+...|++++.++.++  ++.+|++++++++.+.+      .+|++++|+|+||.+-+   +++
T Consensus       117 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~v~l~~P~NPTG~~~s~~~~~~  190 (399)
T PRK07681        117 GDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKA------KMMILNFPGNPVPAMAHEDFFKE  190 (399)
T ss_pred             CCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc------eEEEEeCCCCCcCcCCCHHHHHH
Confidence            34567778899999888999999999999864  36789999999886544      47888899999999966   788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+........  +.+...-.++..+..|.++ ....+|+++.. ++.+...... ..+.
T Consensus       191 i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~-~~l~~~~~~~-~~~~  268 (399)
T PRK07681        191 VIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGN-EEIVRALTQF-KSNT  268 (399)
T ss_pred             HHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecC-HHHHHHHHHH-Hhhc
Confidence            8999999999999999998654422111110  0111112466678899986 34568988763 3333221100 0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                                  .                               ++   ...+....+..++.. +...+++..++..+.
T Consensus       269 ------------~-------------------------------~~---~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~  301 (399)
T PRK07681        269 ------------D-------------------------------YG---VFLPIQKAACAALRN-GAAFCEKNRGIYQER  301 (399)
T ss_pred             ------------c-------------------------------cC---CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHH
Confidence                        0                               00   000111222222221 223456666667788


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+++.+.|+++ |+++..++....++++++. .....++.+.|.+ .|+ .+.++. +  .+.+++|+++.   .+++++
T Consensus       302 ~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~-~~~~~~~~~~l~~~~gv-~v~pg~~f~~~~~~~iRis~~---~~~~~~  375 (399)
T PRK07681        302 RDTLVDGFRTF-GWNVDKPAGSMFVWAEIPK-GWTSLSFAYALMDRANV-VVTPGHAFGPHGEGFVRIALV---QDEEVL  375 (399)
T ss_pred             HHHHHHHHHHC-CCcccCCCeeeEEEEECCC-CCCHHHHHHHHHHhCCE-EEeCChhhCcCCCCeEEEEec---CCHHHH
Confidence            88888999887 7776555555566666653 2235678888877 564 454432 2  23469999875   258999


Q ss_pred             HHHHHHHHHH
Q psy3048         338 AFAWNEISHQ  347 (367)
Q Consensus       338 d~li~~l~~~  347 (367)
                      +.+++.|++.
T Consensus       376 ~~~l~~l~~~  385 (399)
T PRK07681        376 QQAVENIRNS  385 (399)
T ss_pred             HHHHHHHHHh
Confidence            9999999884

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.69  E-value=2.1e-16  Score=150.47  Aligned_cols=203  Identities=21%  Similarity=0.196  Sum_probs=132.8

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-----CCCcCH-----HHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-----NGVLRG-----DALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-----~~~~d~-----~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      +.-.|++++++|.|+..++.+.|+.++++++.+     -+.+++     +.+++++++..... .+.+|+++++ |+.|.
T Consensus       105 ~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k-~~~~vvlt~P-TY~Gv  182 (417)
T PF01276_consen  105 PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK-APRLVVLTSP-TYYGV  182 (417)
T ss_dssp             TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH-CESEEEEESS--TTSE
T ss_pred             CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc-CceEEEEeCC-CCCeE
Confidence            455788999999999999999999999998841     245666     99999998765321 1445777775 77999


Q ss_pred             cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc-------eeeeccccccccCCcceeEEEecch-hh
Q psy3048          99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD-------SFAFNAHKWLLTNHDCSAMWVKNAN-HL  170 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D-------~~~~~~hK~l~~p~g~g~l~~~~~~-~~  170 (367)
                      +.|+++|+++||++|++++||+|||+...+.+..... ... .+|       +++.|.||.+.+..+++++.+++.. .-
T Consensus       183 ~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a-~~~-gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~  260 (417)
T PF01276_consen  183 CYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSA-LAL-GADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVD  260 (417)
T ss_dssp             EE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTC-SST-TSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTT
T ss_pred             EECHHHHHHHhcccCCEEEEEccccccccCCCCccch-hhc-cCccccccceeeeechhhcccccccceEEEecCCCccc
Confidence            9999999999999999999999999987776432221 111 468       9999999999999999999998764 11


Q ss_pred             hhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHH
Q psy3048         171 TNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLK  249 (367)
Q Consensus       171 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  249 (367)
                      ...+.  ..+....     +++++|.+                                      ...+-.+.+.+ +.+
T Consensus       261 ~~~~~--~~l~~~~-----TTSPSY~l--------------------------------------mASlD~a~~~m~~~~  295 (417)
T PF01276_consen  261 HERVN--EALSMHQ-----TTSPSYPL--------------------------------------MASLDVARAQMEEEE  295 (417)
T ss_dssp             HHHHH--HHHHHHS------SS--HHH--------------------------------------HHHHHHHHHHHSHHH
T ss_pred             HHHHH--HHHHHHc-----CCChHHHH--------------------------------------HHHHHHHHHHHhhhh
Confidence            11110  0111010     23444411                                      12233333444 334


Q ss_pred             HHHHHHHHHHHHHHHHHHHh---cCCCCeEEeCCC
Q psy3048         250 GLQAYLRKHISLAKKFADLV---EKDDRFELVCPP  281 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L---~~~~g~~~~~~~  281 (367)
                      | ++.+++..++++.++++|   +++++|+++.|+
T Consensus       296 G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~  329 (417)
T PF01276_consen  296 G-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPE  329 (417)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-S
T ss_pred             h-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCcc
Confidence            4 566778888889999998   778889888754

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.68  E-value=2.6e-15  Score=144.76  Aligned_cols=246  Identities=17%  Similarity=0.203  Sum_probs=158.7

Q ss_pred             EEEecCCcchh----HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s----~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+    +...+...|++++.++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus       100 ~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~t------klV~le~p~Np~G~v~dl~~I~~  168 (391)
T TIGR01328       100 HLISDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDNT------KIVYFETPANPTMKLIDMERVCR  168 (391)
T ss_pred             EEEEecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccCC------eEEEEECCCCCCCcccCHHHHHH
Confidence            45566666543    334455679999988865     8999999997765      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc-eeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC-SAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||++|+++++|++|+.+....+ .   .   ..+|+++.+++|+++++.+. |.+++.+++.+.+..........    
T Consensus       169 la~~~gi~livD~a~a~~~~~~~-~---~---~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~----  237 (391)
T TIGR01328       169 DAHSQGVKVIVDNTFATPMLTNP-V---A---LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT----  237 (391)
T ss_pred             HHHHcCCEEEEECCCchhccCCc-h---h---cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC----
Confidence            99999999999999976543211 1   1   14699999999999987542 33444455444332110000000    


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  +.....+..+..++  +.+.+..++++..++++++.
T Consensus       238 --------------------------------------------g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la  271 (391)
T TIGR01328       238 --------------------------------------------GSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVA  271 (391)
T ss_pred             --------------------------------------------CCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHH
Confidence                                                        00011123343333  34556777888999999999


Q ss_pred             HHhcCCCCeEE-eCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE-
Q psy3048         267 DLVEKDDRFEL-VCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF-  317 (367)
Q Consensus       267 ~~L~~~~g~~~-~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~-  317 (367)
                      +.|+++|++.- ..|     |           ..++++|.+++......++.++|.--  +       .+...|.  .+ 
T Consensus       272 ~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~  351 (391)
T TIGR01328       272 EYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHA  351 (391)
T ss_pred             HHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCccccc
Confidence            99999998764 333     1           13589999875333345666655321  1       0001110  00 


Q ss_pred             ---------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         318 ---------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       318 ---------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                               .  ..+.+|+|+.     -||++.+++.|++.++.
T Consensus       352 ~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~  390 (391)
T TIGR01328       352 VVPKEEREAAGITDGMIRLSVG-----LEDADDLIADLKQALDA  390 (391)
T ss_pred             cCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHHhh
Confidence                     0  1458999774     36899999999988764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.68  E-value=7.2e-15  Score=146.94  Aligned_cols=266  Identities=11%  Similarity=0.006  Sum_probs=159.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++++.++..+...+...|++++.+++++  ++.+|+++|++++.+.+      .+|++++|+|+||.+-+   +++|
T Consensus       233 d~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------k~i~i~nP~NPTG~v~~~~~l~~i  306 (517)
T PRK13355        233 DEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRT------KAIVIINPNNPTGALYPREVLQQI  306 (517)
T ss_pred             CEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcCcCHHHHHHH
Confidence            3566678899999999999999999998863  58899999999987665      47888999999999966   8999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceee-ecccccc-ccCCcceeEEEec-chhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA-FNAHKWL-LTNHDCSAMWVKN-ANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~-~~~hK~l-~~p~g~g~l~~~~-~~~~~~~~~~~~~yl~  182 (367)
                      +++|++||+++++|++|.-..+....+.....-....-+++ .+..|.+ .++..+|+++... .+.++.....- ..+.
T Consensus       307 ~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l-~~~~  385 (517)
T PRK13355        307 VDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGL-NMLA  385 (517)
T ss_pred             HHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHH-HHHh
Confidence            99999999999999999754432111111100011112343 4568986 4457799988643 22111100000 0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh--HHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG--LKGLQAYLRKHIS  260 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~~~~~~~  260 (367)
                      ..         .                               ++   ...+....+..+|....  .+-+++ .++..+
T Consensus       386 ~~---------~-------------------------------~~---~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~  421 (517)
T PRK13355        386 NM---------R-------------------------------LC---SNVPAQSIVQTALGGHQSVKDYLVP-GGRVYE  421 (517)
T ss_pred             cC---------c-------------------------------CC---cChHHHHHHHHHhcCCccHHHHHHH-HHHHHH
Confidence            00         0                               00   00011112222221100  112222 234455


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCCc---hHHHHHH-HHHhccCcEEEEEeEEC--CeeEEEEEecCCCCC
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCF-RLKGDN---DLTNQLY-ERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETN  333 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~---~~~~~l~-~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~  333 (367)
                      ..+++.+.|++++|+++.. |..+...| +++...   ....+++ +.|.++|+....++.+.  +.+++|+++.   .+
T Consensus       422 ~r~~l~~~L~~~~g~~~~~-p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~  497 (517)
T PRK13355        422 QRELVYNALNAIPGISAVK-PKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PR  497 (517)
T ss_pred             HHHHHHHHHhcCCCcccCC-CCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CC
Confidence            6788899999888887654 44444433 554310   1133444 44566675443333332  4679999773   47


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy3048         334 QCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~  351 (367)
                      +++++..++.|.++++..
T Consensus       498 ~~~l~~a~~rl~~~~~~~  515 (517)
T PRK13355        498 LEDLEDAMDRLADFFSYY  515 (517)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            899999999999987653

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.68  E-value=4e-15  Score=141.77  Aligned_cols=252  Identities=12%  Similarity=0.061  Sum_probs=159.7

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC-C-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD-D-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|++++.++..+...++..|++++.++.+ + ++.+|++++++++++.+      .++++++++|+||.+.|   +++|+
T Consensus        89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~~l~  162 (350)
T TIGR03537        89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEET------KIVWINYPHNPTGATAPRSYLKETI  162 (350)
T ss_pred             eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhcc------EEEEEeCCCCCcCcccCHHHHHHHH
Confidence            67778899999999999999999999985 3 46789999999987755      47778889999999877   89999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++||+++++|++|+-..+..+.......+.+ -.++..+.+|.++.| ..+|+++. ++............+ ... 
T Consensus       163 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~i~~~s~SK~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~-~~~-  238 (350)
T TIGR03537       163 AMCREHGIILCSDECYTEIYFGEPPHSALEVGIE-NVLAFHSLSKRSGMTGYRSGFVAG-DEKLISFLRKLRANF-GVA-  238 (350)
T ss_pred             HHHHHcCcEEEEeccccccccCCCCCchhhcCcC-CEEEEeecccccCCccccceeeec-CHHHHHHHHHHHHhh-ccC-
Confidence            9999999999999999754332111000001111 135666889988544 45777764 333232211100000 000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +..+....+..++.  ..+.+++..++..+..+++
T Consensus       239 ---------------------------------------------~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~  271 (350)
T TIGR03537       239 ---------------------------------------------SPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLF  271 (350)
T ss_pred             ---------------------------------------------CCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHH
Confidence                                                         00000111112221  2334566667777888888


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EE--CCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SF--QGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~--~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .+.|++. |+++..+.....+.+.++. .....++.+.|.++|+ .+.++ .+  .+..++|+++.   .++++++..++
T Consensus       272 ~~~l~~~-g~~~~~~~g~~~~~~~~~~-~~~~~~l~~~L~~~gv-~v~~g~~f~~~~~~~~Ri~~~---~~~~~~~~~l~  345 (350)
T TIGR03537       272 IEFFNKV-GLEYLYPDATFYLWVKVPS-GIDAKDYALRLLENGI-VVAPGENFGSGEEGYVRVALV---PTLEECEEALR  345 (350)
T ss_pred             HHHHHHC-CCcccCCCeEEEEEEECCC-CCCHHHHHHHHHHCCE-EEcCchhhCCCCCCEEEEEec---CCHHHHHHHHH
Confidence            8888886 7765543322334556653 2235688999988885 44433 22  22568999763   36788988888


Q ss_pred             HHHH
Q psy3048         343 EISH  346 (367)
Q Consensus       343 ~l~~  346 (367)
                      .|++
T Consensus       346 ~~~~  349 (350)
T TIGR03537       346 LWER  349 (350)
T ss_pred             HHhc
Confidence            8765

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.68  E-value=1.1e-14  Score=140.75  Aligned_cols=264  Identities=10%  Similarity=0.102  Sum_probs=162.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~  106 (367)
                      -.|++.+.+|..+...++..|++++.++.++ ++.+|+++|++++++..+   .+.++++++++|+||.+-   ++++|+
T Consensus       116 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~---~~~~i~l~~P~NPtG~~~s~~~~~~l~  192 (391)
T PRK07309        116 DKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD---KLKAVILNYPANPTGVTYSREQIKALA  192 (391)
T ss_pred             CEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC---CeEEEEEECCCCCCCcCcCHHHHHHHH
Confidence            3566677888888888999999999999864 468999999999865321   135788888999999974   589999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++||+++++|++|+...+..............-.++..+.+|.++.| ..+|+++... +.+..... ...+.... 
T Consensus       193 ~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~-~~~~~~~~-~~~~~~~~-  269 (391)
T PRK07309        193 DVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPA-EFTAQLIK-SHQYLVTA-  269 (391)
T ss_pred             HHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCH-HHHHHHHH-HHhhcccC-
Confidence            99999999999999997654421111000000011136777899998644 5578877643 33322110 00111000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   ...+....+...++. +........++..+.++++
T Consensus       270 ---------------------------------------------~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~  303 (391)
T PRK07309        270 ---------------------------------------------ATTMAQFAAVEALTN-GKDDALPMKKEYIKRRDYI  303 (391)
T ss_pred             ---------------------------------------------CChHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHH
Confidence                                                         000111122222221 1111233445566777888


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHh-ccCcEEEEEeEE---CCeeEEEEEecCCCCCHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLM-SHKQIYIIKASF---QGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~-~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      .+.|++. |+.+..+.....++++++.. .....++.+++. +.| +.+.++..   .+..++|+++..   +.++++..
T Consensus       304 ~~~l~~~-~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~g-v~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~  378 (391)
T PRK07309        304 IEKMTDL-GFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKA-VAFIPGAAFGPYGEGYVRLSYAA---SMETIKEA  378 (391)
T ss_pred             HHHHHHC-CCeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEecC---CHHHHHHH
Confidence            8889887 77765443333344455431 113457787765 456 44544432   235699997753   57899999


Q ss_pred             HHHHHHHHHHh
Q psy3048         341 WNEISHQSSEM  351 (367)
Q Consensus       341 i~~l~~~~~~~  351 (367)
                      +++|+++++++
T Consensus       379 i~~l~~~~~~~  389 (391)
T PRK07309        379 MKRLKEYMEEH  389 (391)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>PLN02187 rooty/superroot1

Probab=99.68  E-value=8.2e-15  Score=144.30  Aligned_cols=273  Identities=7%  Similarity=-0.006  Sum_probs=170.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.++..+...+...|++++.++..  +++.+|+++|++++++.+      .++++++|+|+||.+-+   +++
T Consensus       155 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~------~~v~i~nP~NPTG~v~s~e~l~~  228 (462)
T PLN02187        155 NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENT------VAMVVINPNNPCGNVYSHDHLKK  228 (462)
T ss_pred             CCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCc------EEEEEeCCCCCCCCccCHHHHHH
Confidence            3456667788888888888999999999874  468999999999886654      48889999999999855   889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhh-h--hhccCCc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHL-T--NTFFTDR  178 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~-~--~~~~~~~  178 (367)
                      |+++|++||+++++|++|+-..+....+..  .+... .--++..+..|.+..| ..+|+++..++..+ .  +.+....
T Consensus       229 i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~-~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~  307 (462)
T PLN02187        229 VAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASI-VPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK  307 (462)
T ss_pred             HHHHHHHCCCEEEEeccccccccCCCCceeHHHhccC-CcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHH
Confidence            999999999999999999765442211101  11111 0124556789995555 78999887543211 0  1110000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      .+..                                           +.. +...+...++..++.....+.+++..+..
T Consensus       308 ~~~~-------------------------------------------~~~-~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l  343 (462)
T PLN02187        308 QNLD-------------------------------------------VTP-DPATIIQAALPAILEKADKNFFAKKNKIL  343 (462)
T ss_pred             Hhcc-------------------------------------------ccC-CCCHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            0000                                           000 00011122223333321235577777788


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCC-CceeEEEEEcCC--c--hHHHHHHHHH-hccCcEEEEEeEECCeeEEEEEecCCCC
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPP-SMGLVCFRLKGD--N--DLTNQLYERL-MSHKQIYIIKASFQGRPFLRFVVTSPET  332 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~--~--~~~~~l~~~L-~~~g~~~~~~~~~~~~~~lRi~~~~~~~  332 (367)
                      .+..+++.+.|++++++..+..| ..+.+.+++...  .  ....+++.++ .++|+....+..+...+++|+++..   
T Consensus       344 ~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~---  420 (462)
T PLN02187        344 KHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGV---  420 (462)
T ss_pred             HHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCC---
Confidence            88889999999988654433334 445555555310  1  1133555544 5667544433334446799998753   


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCC
Q psy3048         333 NQCDVAFAWNEISHQSSEMNLPRG  356 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~~~~~~  356 (367)
                      .+++++..++.|.+++++..++..
T Consensus       421 ~~e~l~~al~rL~~~l~~~~~~~~  444 (462)
T PLN02187        421 EAHMLEDALERLKGFCTRHAKKTE  444 (462)
T ss_pred             CHHHHHHHHHHHHHHHHHhhhccc
Confidence            589999999999999987765553

>PRK09082 methionine aminotransferase; Validated

Probab=99.68  E-value=2.2e-15  Score=145.47  Aligned_cols=257  Identities=11%  Similarity=0.008  Sum_probs=163.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      .-.|++++..|.++...++..|++++.++.+ +++.+|++++++++++.+      .+|++++++|+||.+   +++++|
T Consensus       115 gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~i  188 (386)
T PRK09082        115 GDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPRT------RLIILNTPHNPSGTVWSAADMRAL  188 (386)
T ss_pred             CCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCccc------eEEEEeCCCCCCCcCCCHHHHHHH
Confidence            4467778889999999999999999999986 468999999999987644      477788999999987   789999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      .++|++||+++++|++|+...+.......  ...+...-.++..+..|.++.| ..+|+++.. ++.+..... ...+. 
T Consensus       189 ~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~-~~l~~~~~~-~~~~~-  265 (386)
T PRK09082        189 WQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP-AALSAEFRK-VHQYN-  265 (386)
T ss_pred             HHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC-HHHHHHHHH-HHhhh-
Confidence            99999999999999999765442211111  1112222357777889998644 568888864 332221100 00000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                                                .++.   ..+.+..+...+.. ..+.+++..+...+..
T Consensus       266 ------------------------------------------~~~~---~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~  299 (386)
T PRK09082        266 ------------------------------------------TFTV---NTPAQLALADYLRA-EPEHYLELPAFYQAKR  299 (386)
T ss_pred             ------------------------------------------cCCC---ChHHHHHHHHHHhC-ChHHHHHHHHHHHHHH
Confidence                                                      0000   00111112222221 3445666667778888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCce-eEEEEEcC-CchHHHHHHHHHhccCcEEEEEeE-E----CCeeEEEEEecCCCCCHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMG-LVCFRLKG-DNDLTNQLYERLMSHKQIYIIKAS-F----QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~-~v~f~~~~-~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~lRi~~~~~~~~~e  335 (367)
                      +++.+.|++. |+++.. +..+ .++++++. .+....++.+.|.++..+.+.++. +    .+.+++|++++.   +++
T Consensus       300 ~~~~~~L~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~---~~~  374 (386)
T PRK09082        300 DRFRAALANS-RFKLLP-CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK---QEE  374 (386)
T ss_pred             HHHHHHHHhC-CCcccC-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC---CHH
Confidence            8899999885 777654 3434 34556642 122356788877544334554442 2    124699998753   588


Q ss_pred             HHHHHHHHHHH
Q psy3048         336 DVAFAWNEISH  346 (367)
Q Consensus       336 did~li~~l~~  346 (367)
                      +++..++.|++
T Consensus       375 ~l~~~~~rl~~  385 (386)
T PRK09082        375 TLDAAAERLCQ  385 (386)
T ss_pred             HHHHHHHHHhh
Confidence            88888888765

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.68  E-value=9.3e-15  Score=142.24  Aligned_cols=264  Identities=13%  Similarity=0.068  Sum_probs=167.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++++.+|..+...++..|++++.++.+  +++.+|+++|++++++.+      .+|++++++|+||.+   +++++|
T Consensus       129 d~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~p~NPtG~~~s~~~~~~l  202 (412)
T PTZ00433        129 DNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRT------KALIMTNPSNPCGSNFSRKHVEDI  202 (412)
T ss_pred             CEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCc------eEEEEeCCCCCCCcccCHHHHHHH
Confidence            456677888999999999999999999985  357899999999887644      477889999999987   457888


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCC-C-cceeeecccccc-ccCCcceeEEEecc-----hhhhhhccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-Y-VDSFAFNAHKWL-LTNHDCSAMWVKNA-----NHLTNTFFTD  177 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-~-~D~~~~~~hK~l-~~p~g~g~l~~~~~-----~~~~~~~~~~  177 (367)
                      +++|++||+++++|++|....+....+.. ...+. . .-+++.+..|.+ .....+|+++..++     ..+.......
T Consensus       203 ~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~  281 (412)
T PTZ00433        203 IRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG  281 (412)
T ss_pred             HHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh
Confidence            99999999999999999754432111111 01111 1 125667789998 45578999887332     1121110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                        ...                                           +.   ...+....+..++..-....+++..++
T Consensus       282 --~~~-------------------------------------------~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~  313 (412)
T PTZ00433        282 --MLV-------------------------------------------CG---PCSVVQAALGEALLNTPQEHLEQIVAK  313 (412)
T ss_pred             --hcc-------------------------------------------CC---CChHHHHHHHHHHhcCcHHHHHHHHHH
Confidence              000                                           00   000111111222221113446667777


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC---c-hHHHHHHHHHhc-cCcEEEEEeEECCeeEEEEEecCCCC
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD---N-DLTNQLYERLMS-HKQIYIIKASFQGRPFLRFVVTSPET  332 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~---~-~~~~~l~~~L~~-~g~~~~~~~~~~~~~~lRi~~~~~~~  332 (367)
                      ..+..+++.+.|+++.|+.+..|.....+.++++..   + ....++.+.|.+ +|+....+..+...+++|+++..   
T Consensus       314 ~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~---  390 (412)
T PTZ00433        314 LEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR---  390 (412)
T ss_pred             HHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC---
Confidence            888888899999887677655444445566666431   0 124678888875 57543333333345799998753   


Q ss_pred             CHHHHHHHHHHHHHHHHHhh
Q psy3048         333 NQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~~  352 (367)
                      .+++++..++.|.+++++..
T Consensus       391 ~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        391 PVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHhc
Confidence            47889999999999887644

>PRK08363 alanine aminotransferase; Validated

Probab=99.68  E-value=8.5e-15  Score=141.90  Aligned_cols=264  Identities=11%  Similarity=0.001  Sum_probs=163.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEE-ecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQL-RSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v-~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|..+...++..|.+++.+ +.+ +++.+|+++|++++.+.+      .+|++++++|+||.+-+   +++
T Consensus       117 gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~  190 (398)
T PRK08363        117 GDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKT------KAIAVINPNNPTGALYEKKTLKE  190 (398)
T ss_pred             CCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcce------EEEEEECCCCCCCcCcCHHHHHH
Confidence            3457777889999999999999988888 444 456799999999886544      47778899999999866   899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEe-cchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVK-NANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~-~~~~~~~~~~~~~~yl  181 (367)
                      |+++|+++|+++++|++|+...+...... ..+... .--++..+.+|++. .+.++|+++.. .+..+.........+.
T Consensus       191 l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~  269 (398)
T PRK08363        191 ILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKD-VPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLA  269 (398)
T ss_pred             HHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcC-CcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHh
Confidence            99999999999999999976443211100 011111 01244668899954 45778998873 2322221110000000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                       ..                                        .+.   ...+....+..++.. ..+.+++..++..+.
T Consensus       270 -~~----------------------------------------~~~---~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~  304 (398)
T PRK08363        270 -RI----------------------------------------RLC---PNTPAQFAAIAGLTG-PMDYLEEYMKKLKER  304 (398)
T ss_pred             -cc----------------------------------------ccc---CChHHHHHHHHHHhC-ChHHHHHHHHHHHHH
Confidence             00                                        000   000111222222322 245667777788888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCC-chHHHHHHH-HHhccCcEEEEEeE-EC--CeeEEEEEecCCCCCHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCF-RLKGD-NDLTNQLYE-RLMSHKQIYIIKAS-FQ--GRPFLRFVVTSPETNQC  335 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~-~~~~~~l~~-~L~~~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~e  335 (367)
                      .+++.+.|++++++.+. +|..+.+.+ ++++. .....++.. .|.++|+. +.++. +.  +..++|+++.   .+++
T Consensus       305 ~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~-v~~g~~f~~~~~~~iRis~~---~~~~  379 (398)
T PRK08363        305 RDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVL-FVHGSGFGEYGAGHFRLVFL---PPVE  379 (398)
T ss_pred             HHHHHHHHhcCCCCEec-CCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEE-EeCchhhCCCCCCeEEEEec---CCHH
Confidence            89999999888887754 444455444 55431 012344544 45667754 44332 22  3469999764   2588


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         336 DVAFAWNEISHQSSE  350 (367)
Q Consensus       336 did~li~~l~~~~~~  350 (367)
                      +++..++.|++++.+
T Consensus       380 ~l~~~l~~l~~~~~~  394 (398)
T PRK08363        380 ILEEAMDRFEEFMRE  394 (398)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987665

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.68  E-value=5.3e-15  Score=142.78  Aligned_cols=247  Identities=17%  Similarity=0.186  Sum_probs=161.6

Q ss_pred             EEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+...    .+...|+++++++.     .|++++++++++++      .+|.+.+++|++|.+.|+++|++
T Consensus       105 ~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~t------klV~ie~p~NPtg~v~dl~~I~~  173 (398)
T PRK08249        105 RVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKGC------DLLYLETPTNPTLKIVDIERLAA  173 (398)
T ss_pred             EEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCCC------eEEEEECCCCCCCccCCHHHHHH
Confidence            56677788877543    34457888887764     48999999997765      48888899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||+||+++++|++|+.+....+ .   .   ..+|+++.+.+|+++++.. .|++++.+++...+..... ...     
T Consensus       174 la~~~gi~livD~t~a~~~~~~~-l---~---~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~-~~~-----  240 (398)
T PRK08249        174 AAKKVGALVVVDNTFATPINQNP-L---A---LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR-EIN-----  240 (398)
T ss_pred             HHHHcCCEEEEECCcCccccCCc-h---h---hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH-Hhc-----
Confidence            99999999999999986433211 1   1   1459999999999987643 3444444444333221000 000     


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  +.....+..+..++  +.+-+..++++..++++.+.
T Consensus       241 --------------------------------------------g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la  274 (398)
T PRK08249        241 --------------------------------------------GATMDPMSAYLILR--GMKTLKLRVRQQQESAMALA  274 (398)
T ss_pred             --------------------------------------------CCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHH
Confidence                                                        00011233343333  45667788889999999999


Q ss_pred             HHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE-
Q psy3048         267 DLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF-  317 (367)
Q Consensus       267 ~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~-  317 (367)
                      +.|+++|.++ +..|     |           ..++++|.+.+......++.+.|.--  +       .....|.  .+ 
T Consensus       275 ~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~  354 (398)
T PRK08249        275 KYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHV  354 (398)
T ss_pred             HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCcccccc
Confidence            9999998876 4443     1           24688999875333345666665321  1       0111111  00 


Q ss_pred             ---------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         318 ---------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       318 ---------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                               .  .++.+|+|+.     -||++.+++.|++.++.+..
T Consensus       355 ~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~~  396 (398)
T PRK08249        355 ENTLEERAALGIPEGLVRISVG-----IEDTEDLIADLEQAFAHLES  396 (398)
T ss_pred             cCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHHhhh
Confidence                     0  1468999774     36889999999998886554

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.67  E-value=1.6e-14  Score=140.11  Aligned_cols=265  Identities=12%  Similarity=0.014  Sum_probs=166.1

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~  106 (367)
                      .|++++.++..+...++..|++++.++++  +++.+|++.|++++++.+      .++++++++|+||.+-   ++++|+
T Consensus       121 ~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~  194 (401)
T TIGR01264       121 NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKT------AALIVNNPSNPCGSVFSRQHLEEIL  194 (401)
T ss_pred             EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCc------eEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            45566778888888888899999998875  357899999999886644      3778899999999984   588999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCC-CCc-ceeeeccccc-cccCCcceeEEEecch-hhhhhccCCccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYV-DSFAFNAHKW-LLTNHDCSAMWVKNAN-HLTNTFFTDRVYLK  182 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~-D~~~~~~hK~-l~~p~g~g~l~~~~~~-~~~~~~~~~~~yl~  182 (367)
                      ++|+++|+++++|++|..+.+....... +..+ ... -+++.+..|. +.....+|+++..+.. .+......-..+..
T Consensus       195 ~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~  273 (401)
T TIGR01264       195 AVAERQCLPIIADEIYGDMVFSGATFEP-LASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ  273 (401)
T ss_pred             HHHHHCCCEEEEEhhhhhhccCCccccc-HHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh
Confidence            9999999999999999765442211111 0111 111 2567778997 5545778988875421 11111000000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                         +..   ..+....+...+.....+.+++..++..+..
T Consensus       274 ~~-----------------------------------------~~~---~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r  309 (401)
T TIGR01264       274 RI-----------------------------------------LGP---CTIVQGALPSILLRTPQEYFDGTLSVLESNA  309 (401)
T ss_pred             cc-----------------------------------------CCC---CcHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            00                                         000   0011122222332212345667777788888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCC----chHHHHHHHHHh-ccCcEEEEEe-EECCeeEEEEEecCCCCCHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLM-SHKQIYIIKA-SFQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~----~~~~~~l~~~L~-~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~ed  336 (367)
                      +++.+.|++++|+....|...+.++++++..    .....++.+.+. +.|+ .+.++ .+...+++|+++..   .+++
T Consensus       310 ~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI-~v~pg~~f~~~~~iRis~~~---~~~~  385 (401)
T TIGR01264       310 MLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSV-FCLPGSCFEYPGFFRVVLTV---PVVM  385 (401)
T ss_pred             HHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCE-EEeCchhcCCCCeEEEEEcC---CHHH
Confidence            8899999888777655555555666665320    112467777775 5675 44443 33346799998753   4789


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3048         337 VAFAWNEISHQSSEM  351 (367)
Q Consensus       337 id~li~~l~~~~~~~  351 (367)
                      ++..++.|.++++++
T Consensus       386 l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       386 MEEACSRIQEFCERH  400 (401)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999998887653

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.67  E-value=9.6e-15  Score=140.82  Aligned_cols=256  Identities=11%  Similarity=0.031  Sum_probs=160.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      +.-.|++.+.++......++..|++++.++.+.  ++.+|++++++++.+.+      .+|++++++|+||.+-+   ++
T Consensus       114 ~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~------~~v~i~~P~NPtG~~~~~~~~~  187 (383)
T TIGR03540       114 PGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKA------KLMFINYPNNPTGAVAPLKFFK  187 (383)
T ss_pred             CCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccc------eEEEEeCCCCCcCccCCHHHHH
Confidence            345677788888888888889999999999863  46789999999886544      47888889999999976   78


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|+++|++||+++++|++|+-..+.......  .+.+.....+...+..|.++.| ..+|+++.. ++.+....... .+
T Consensus       188 ~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~-~~l~~~~~~~~-~~  265 (383)
T TIGR03540       188 ELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGN-ADLIAGLGKVK-TN  265 (383)
T ss_pred             HHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCC-HHHHHHHHHHH-Hh
Confidence            9999999999999999999754332111000  0111111246667888988533 448888653 33332211000 00


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      ....                                              ........+..++.. +.+.+++..++..+
T Consensus       266 ~~~~----------------------------------------------~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~  298 (383)
T TIGR03540       266 VDSG----------------------------------------------VFQAIQYAAIAALNG-PQDVVKEIRKIYQR  298 (383)
T ss_pred             cccC----------------------------------------------CChHHHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence            0000                                              000111222222322 24456666777788


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEE---CCeeEEEEEecCCCCCHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASF---QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~---~~~~~lRi~~~~~~~~~ed  336 (367)
                      ..+++.+.|++. |+.+..+.....+++++++ .....++.+.|.+ .| +.+.++..   .+.+++|+++..   ++++
T Consensus       299 ~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ll~~~g-i~v~~g~~f~~~~~~~~Ris~~~---~~~~  372 (383)
T TIGR03540       299 RRDLLLEALKKI-GIDVEKPKATFYVWVPVPE-GYTSAEFAARLLEETG-VVVTPGVGFGEYGEGYIRISLTV---PDER  372 (383)
T ss_pred             HHHHHHHHHHhC-CCEecCCCcceEEEEECCC-CCCHHHHHHHHHHHCC-EEEecchhhCccCCCeEEEEecC---CHHH
Confidence            889999999887 7877654443345666653 2335678888764 56 44544322   234699998742   4666


Q ss_pred             HHHHHHHHH
Q psy3048         337 VAFAWNEIS  345 (367)
Q Consensus       337 id~li~~l~  345 (367)
                      +...++.|.
T Consensus       373 l~~~l~~l~  381 (383)
T TIGR03540       373 LEEAVARIK  381 (383)
T ss_pred             HHHHHHHHh
Confidence            766666654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09265 aminotransferase AlaT; Validated

Probab=99.67  E-value=1.4e-14  Score=140.75  Aligned_cols=265  Identities=11%  Similarity=0.001  Sum_probs=159.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++++.+|..+..++...|.+++.++++.  ++.+|+++|++++++.+      .+|++++++|+||.+.+   +++|
T Consensus       120 d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~P~NPtG~~~~~~~~~~i  193 (404)
T PRK09265        120 DEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRT------KAIVIINPNNPTGAVYSKELLEEI  193 (404)
T ss_pred             CEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccc------eEEEEECCCCCCCcCCCHHHHHHH
Confidence            3566788999999998888999998888753  57799999999886654      47888899999999987   8999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee-eecccccccc-CCcceeEEEecchh-hhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF-AFNAHKWLLT-NHDCSAMWVKNANH-LTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~-~~~~hK~l~~-p~g~g~l~~~~~~~-~~~~~~~~~~yl~  182 (367)
                      +++|++||+++++|++|+...+..........-.....++ ..+..|.++. ...+|+++...... ........ ..+.
T Consensus       194 ~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~-~~~~  272 (404)
T PRK09265        194 VEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGL-DMLA  272 (404)
T ss_pred             HHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHH-HHHh
Confidence            9999999999999999975443211111100001112334 4556899854 46688888642221 11110000 0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHH---HHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAY---LRKHI  259 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~---~~~~~  259 (367)
                      ...                                        +.   ...+....+..+|..  .+.+.+.   .++..
T Consensus       273 ~~~----------------------------------------~~---~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~  307 (404)
T PRK09265        273 SMR----------------------------------------LC---ANVPAQHAIQTALGG--YQSINELILPGGRLY  307 (404)
T ss_pred             ccc----------------------------------------cC---CCcHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence            000                                        00   000111122222221  1112222   23455


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc----hHHHHHHHHHhccCcEEEEEeEE--CCeeEEEEEecCCCCC
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN----DLTNQLYERLMSHKQIYIIKASF--QGRPFLRFVVTSPETN  333 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~----~~~~~l~~~L~~~g~~~~~~~~~--~~~~~lRi~~~~~~~~  333 (367)
                      +..+.+.+.|++++|+++..|.....++++++...    ...+.+.+.+.++|+....+..+  .+..++|+++.   .+
T Consensus       308 ~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~---~~  384 (404)
T PRK09265        308 EQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL---PR  384 (404)
T ss_pred             HHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC---CC
Confidence            66778888888887877655544455555665311    12345666677777543333332  23569999773   47


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQSSE  350 (367)
Q Consensus       334 ~edid~li~~l~~~~~~  350 (367)
                      +++++..++.|+++++.
T Consensus       385 ~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        385 VDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999988764

>KOG1368|consensus

Probab=99.67  E-value=2.2e-15  Score=133.11  Aligned_cols=256  Identities=15%  Similarity=0.158  Sum_probs=166.0

Q ss_pred             CceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHh-h-CCCccEEEEEecCCCccc-ccCCh
Q psy3048          29 SRLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDL-A-KGLIPCCLVATLGTTGTC-AFDNL  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~-~-~~~~~~~vv~~~~~t~~G-~i~dl  102 (367)
                      +...|++.+.+|.-.++..   .+.|+.++.|...+++.|+++++|+++.... . +.....+|++..-.+..| .+-|+
T Consensus        95 rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPl  174 (384)
T KOG1368|consen   95 RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPL  174 (384)
T ss_pred             CCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeH
Confidence            4578899999999877754   3578999999998999999999999998432 1 233335777776666677 55555


Q ss_pred             ---hhHHHHHhhcCcEEEEecccc---cccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC
Q psy3048         103 ---EELGPICQEYNIWLHVDAAYA---GSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT  176 (367)
Q Consensus       103 ---~~I~~l~~~~gi~l~vD~a~~---~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  176 (367)
                         ++|.++|+++|+.+|.|||.=   +....++ .+...   +.+|+++.+..|.+++|.|  -+++.+..++.++.  
T Consensus       175 e~~~~v~~lak~~glkLH~DGARi~NAavasgV~-vk~i~---~~fDSVsiCLSKglgAPVG--SViVG~k~FI~kA~--  246 (384)
T KOG1368|consen  175 EELDRVKALAKRHGLKLHMDGARIFNAAVASGVP-VKKIC---SAFDSVSICLSKGLGAPVG--SVIVGSKDFIDKAR--  246 (384)
T ss_pred             HHHHHHHHHHhccCCeeecchhhhhhHHHHcCCC-HHHHH---HhhhhhhhhhhccCCCCcc--cEEEccHHHHHHHH--
Confidence               566778999999999999742   1111111 11111   3459999999999999955  56665666555432  


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYL  255 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~  255 (367)
                                             |+.|.++                       ++  .+...+.++..... .+.+. ..
T Consensus       247 -----------------------~~RKalG-----------------------GG--mRQsGvLaaaaLval~~~~~-~L  277 (384)
T KOG1368|consen  247 -----------------------HFRKALG-----------------------GG--MRQSGVLAAAALVALDENVP-LL  277 (384)
T ss_pred             -----------------------HHHHHhc-----------------------Cc--hhHHHHHHHHHHHHhhcchH-HH
Confidence                                   1111110                       00  01111121111111 12222 34


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCH
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~  334 (367)
                      ++-++.++.+.+.+++.+++++-.+ .+++++...+.......+++.+++.+.|+..+..    ....+|+++ ++-.+.
T Consensus       278 ~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~----~s~r~Rivl-h~Qvt~  352 (384)
T KOG1368|consen  278 RADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGG----ASRRIRIVL-HHQVTD  352 (384)
T ss_pred             HHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeec----cccceEEEE-EEecCH
Confidence            4556666667777777777887655 5788888766443445679999999999765542    223489954 788899


Q ss_pred             HHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISH  346 (367)
Q Consensus       335 edid~li~~l~~  346 (367)
                      ++++.++..+++
T Consensus       353 ~~ve~~~~~~~k  364 (384)
T KOG1368|consen  353 EDVEYVKSVLSK  364 (384)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999954

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=4e-15  Score=141.79  Aligned_cols=248  Identities=11%  Similarity=0.019  Sum_probs=157.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|..+...++..|++++.++.++++.+|++++++++ +.+      .+|++++++|+||.+.+.+++.++++
T Consensus       100 ~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~-~~~------~lv~l~nPnNPTG~~~~~~~l~~l~~  172 (351)
T PRK01688        100 DAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL-DGV------KVVYVCSPNNPTGNLINPQDLRTLLE  172 (351)
T ss_pred             CEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc-cCC------cEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            46777788999888889999999999999878999999999887 333      47888999999999987777666654


Q ss_pred             h--cCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 E--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      .  .++++++|++|.-+... ......+..... -++.-+.+|+++. +..+|+++.. ++.++.......+        
T Consensus       173 ~~~~~~~vivDEay~~f~~~-~s~~~~~~~~~n-~iv~rSfSK~~glaGlRiGy~i~~-~~~i~~l~~~~~~--------  241 (351)
T PRK01688        173 LTRGKAIVVADEAYIEFCPQ-ASLAGWLAEYPH-LVILRTLSKAFALAGLRCGFTLAN-EEVINLLLKVIAP--------  241 (351)
T ss_pred             hCCCCcEEEEECchhhcCCC-CChHHHHhhCCC-EEEEecchHhhcCHHHHHhHHhCC-HHHHHHHHhccCC--------
Confidence            3  26899999998654311 111111111111 2566678998863 3456887753 3333221110000        


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                             |                               ...  . .......++|...+.+.+++..++..+.++++.+
T Consensus       242 -------~-------------------------------~v~--~-~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~  280 (351)
T PRK01688        242 -------Y-------------------------------PLS--T-PVADIAAQALSPQGIAAMRERVAEINANRQWLIA  280 (351)
T ss_pred             -------C-------------------------------CCC--H-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence                   0                               000  0 0001111222211223456666677778889999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .|++++++....|+..+.+.+++..    ..++.+.|.++|+........ ...+++||++.    +++|+++++++|+
T Consensus       281 ~L~~~~~~~~~~ps~~nfi~~~~~~----~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al~  351 (351)
T PRK01688        281 ALKEIPCVEQVFDSETNYILARFTA----SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----TREECQRVIDALR  351 (351)
T ss_pred             HHHhCCCCCeECCCCCcEEEEEcCC----HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhhC
Confidence            9998888754556666777776642    568888999888543332222 22569999764    5899999999874

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.67  E-value=1.4e-14  Score=132.14  Aligned_cols=265  Identities=16%  Similarity=0.216  Sum_probs=164.8

Q ss_pred             HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEeccc
Q psy3048          43 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY  122 (367)
Q Consensus        43 ~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~  122 (367)
                      +.......|+++++|+.+     |++.++++|+++||      +|.+....||-+.+-|+++|+++||++|++++||...
T Consensus       118 f~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTk------avf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~  186 (426)
T COG2873         118 FSHTLKRLGIEVRFVDPD-----DPENFEAAIDENTK------AVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF  186 (426)
T ss_pred             HHHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccc------eEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC
Confidence            334456689999999876     89999999999996      6666666789999999999999999999999999998


Q ss_pred             ccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhh-ccCCccccccCCCCCCCCCCCchhhhh
Q psy3048         123 AGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNT-FFTDRVYLKHTDAPMNTQSPDYTVMNW  200 (367)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~-~~~~~~yl~~~~~~~~~~~~~~~~~~~  200 (367)
                      +..++ +.+++.   |   +|+++.|..||+++- ..+|.+++.... +.-. ...-|.|-.....   -....|  .. 
T Consensus       187 atpyl-~rP~~h---G---ADIVvHS~TK~igGhGt~iGG~iVD~G~-FDw~~~~rfP~~~~p~p~---YhGl~~--~~-  252 (426)
T COG2873         187 ATPYL-CRPIEH---G---ADIVVHSATKYIGGHGTAIGGVIVDGGK-FDWTANGRFPEFTTPDPS---YHGLVY--TE-  252 (426)
T ss_pred             Cccee-cchhhc---C---CCEEEEeecccccCCccccceEEEeCCc-cccccCCCCcccCCCCcc---ccceeh--hh-
Confidence            87644 433332   3   599999999999864 456667764432 2110 0011111111000   000011  00 


Q ss_pred             hcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC-
Q psy3048         201 LGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC-  279 (367)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~-  279 (367)
                         ..+.+.+.+.+....    +++.....    .++..|  +-..|.|-+.-+++|+.+++..+.+.|+++|.+.-+. 
T Consensus       253 ---~~g~~af~~~~r~~~----lRDlGa~l----sPfnAf--l~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~Y  319 (426)
T COG2873         253 ---TFGNAAFIIKARVQL----LRDLGATL----SPFNAF--LLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNY  319 (426)
T ss_pred             ---hcccHHHHHHHHHHH----HHhccccc----CcHHHH--HHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeec
Confidence               000111111111100    02222222    223333  3344778888899999999999999999999775432 


Q ss_pred             C-----C------------CceeEEEEEcCCchHHHHHHHHHh---------ccCcEEEEE--eEEC------------C
Q psy3048         280 P-----P------------SMGLVCFRLKGDNDLTNQLYERLM---------SHKQIYIIK--ASFQ------------G  319 (367)
Q Consensus       280 ~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~---------~~g~~~~~~--~~~~------------~  319 (367)
                      |     |            ...+++|.+++..+..+++.+.|.         +...+.++|  +.+.            .
T Consensus       320 pgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~  399 (426)
T COG2873         320 PGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVT  399 (426)
T ss_pred             CCCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCC
Confidence            2     1            246889999875454556666543         122333433  2221            3


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +..+|+|+.     -||++.+++.|++.++.
T Consensus       400 ~~~IRlSVG-----IEd~~DiiaDl~qAl~~  425 (426)
T COG2873         400 PDLIRLSVG-----IEDIDDIIADLEQALEA  425 (426)
T ss_pred             CCcEEEEec-----cCCHHHHHHHHHHHHhc
Confidence            678999874     47899999999998764

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.67  E-value=1e-14  Score=140.59  Aligned_cols=243  Identities=18%  Similarity=0.189  Sum_probs=158.4

Q ss_pred             EEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+...    .+...|+++++++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus       102 ~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~t------klV~ie~p~NptG~v~dl~~I~~  170 (390)
T PRK08133        102 HVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPNT------KLFFLETPSNPLTELADIAALAE  170 (390)
T ss_pred             EEEEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCC------eEEEEECCCCCCCCcCCHHHHHH
Confidence            56667778876543    445689999999874     8899999997765      48888899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||+||+++++|++++.+.+..+ .   ..   .+|+++.+++|+++++. ..|++++.+.+.+.+..    .++...  
T Consensus       171 la~~~gi~livD~t~~~~~~~~p-l---~~---g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~----~~~~~~--  237 (390)
T PRK08133        171 IAHAAGALLVVDNCFCTPALQQP-L---KL---GADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRTA--  237 (390)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-h---hh---CCcEEEeecceeecCCcceEeEEEEcCHHHHHHHH----HHHHHh--
Confidence            99999999999999876543221 1   11   34999999999998653 24444443433332211    001000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  +.....+..|..++  +.+.+..++++..+++.++.
T Consensus       238 --------------------------------------------g~~~~~~~a~~~l~--gl~tl~~R~~~~~~~a~~la  271 (390)
T PRK08133        238 --------------------------------------------GPTLSPFNAWVFLK--GLETLSLRMEAHSANALALA  271 (390)
T ss_pred             --------------------------------------------CCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHH
Confidence                                                        00011233343333  45567888888999999999


Q ss_pred             HHhcCCCCeEEe-CCC----------------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE-
Q psy3048         267 DLVEKDDRFELV-CPP----------------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF-  317 (367)
Q Consensus       267 ~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~-  317 (367)
                      +.|+++|++.-+ .|.                ..++++|.+.+..+...++.+.|.--  +       .....|.  .+ 
T Consensus       272 ~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~  351 (390)
T PRK08133        272 EWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHG  351 (390)
T ss_pred             HHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcc
Confidence            999999988643 331                24689999965333344666654321  1       0011110  00 


Q ss_pred             ---------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 ---------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ---------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                               .  .++.+|+|+.     -||++.+++.|++.++
T Consensus       352 ~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~  389 (390)
T PRK08133        352 RLSPEARAAAGITEGLIRVAVG-----LEDVADIKADLARGLA  389 (390)
T ss_pred             cCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHhh
Confidence                     0  1468999774     3678889999988764

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.67  E-value=1.7e-14  Score=138.71  Aligned_cols=248  Identities=16%  Similarity=0.115  Sum_probs=161.3

Q ss_pred             eEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+.....    ...|++++.++     ..|++++++++++.+      .+|.+++++|++|.+.|+++|.
T Consensus        92 D~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~t------klV~l~sP~NPtG~v~di~~I~  160 (386)
T PRK08045         92 DLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKIC  160 (386)
T ss_pred             CEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccCC------eEEEEECCCCCCCEecCHHHHH
Confidence            35666777877644332    22455666664     258999999987655      4888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|+++|+++++|++|+.+....+ ..   .   .+|+++.+.+||++++.+  .|+++.++++...+.. ....++.  
T Consensus       161 ~ia~~~g~~vivDeay~~~~~~~p-l~---~---gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~-~~~~~~g--  230 (386)
T PRK08045        161 HLAREAGAVSVVDNTFLSPALQNP-LA---L---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELA-WWANNIG--  230 (386)
T ss_pred             HHHHHcCCEEEEECCCCccccCCc-hh---h---CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHH-HHHHhcC--
Confidence            999999999999999976544221 11   1   359999999999998876  5666554444332210 0000000  


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                     ....++..|..++  +.+-+..++++..+++..
T Consensus       231 -----------------------------------------------~~~~p~~~~l~~r--gl~tl~~R~~~~~~na~~  261 (386)
T PRK08045        231 -----------------------------------------------VTGGAFDSYLLLR--GLRTLVPRMELAQRNAQA  261 (386)
T ss_pred             -----------------------------------------------CCCCHHHHHHHHh--hhccHHHHHHHHHHHHHH
Confidence                                                           0011234444444  445688889999999999


Q ss_pred             HHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--E
Q psy3048         265 FADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--S  316 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--~  316 (367)
                      +.+.|+++|.++ +..|     |           ..++++|.+++......++.+.|.--.         .....|.  .
T Consensus       262 la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~  341 (386)
T PRK08045        262 IVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMT  341 (386)
T ss_pred             HHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCcc
Confidence            999999999875 4443     1           236889998753233346666654211         0011111  0


Q ss_pred             E----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         317 F----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       317 ~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +          .  .++.+|+|+.     -||.+.+++.|++.++.+.+
T Consensus       342 ~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~~~~~  385 (386)
T PRK08045        342 HAGMAPEARAAAGISETLLRISTG-----IEDGEDLIADLENGFRAANK  385 (386)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHhhc
Confidence            0          1  1468999874     36889999999998887654

>PRK07550 hypothetical protein; Provisional

Probab=99.67  E-value=1.5e-14  Score=139.56  Aligned_cols=259  Identities=11%  Similarity=0.021  Sum_probs=161.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++..+......++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|++|.+-+   +++
T Consensus       114 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~------~~v~~~~P~NPtG~~~~~~~~~~  187 (386)
T PRK07550        114 GDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRT------RAIALVTPNNPTGVVYPPELLHE  187 (386)
T ss_pred             CCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccC------cEEEEeCCCCCCCcccCHHHHHH
Confidence            34577788888888888888999999999863  56789999999997654      36677789999999855   889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhC--CCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--GLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+............  +...-.+...+.+|.++ ...++|+++..+ ..+....    .+.
T Consensus       188 i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~-~~~~~~~----~~~  262 (386)
T PRK07550        188 LYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASP-ARIAEIE----KFM  262 (386)
T ss_pred             HHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCH-HHHHHHH----HHH
Confidence            999999999999999999754321110000001  11111355778999987 345688888743 2222211    011


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      .....                                           +...+....+..++.. ..+..++..++..+.
T Consensus       263 ~~~~~-------------------------------------------~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~  298 (386)
T PRK07550        263 DTVAI-------------------------------------------CAPRIGQIAVAWGLPN-LADWRAGNRAEIARR  298 (386)
T ss_pred             hhccc-------------------------------------------CCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence            00000                                           0000111122222221 123445555667778


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+++.+.|++++++.+. ++....++++++.....+.++.++|.+ .| +.+.++. +  .+..++|+++..  .+++++
T Consensus       299 ~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~g-v~v~pg~~f~~~~~~~iRis~~~--~~~~~~  374 (386)
T PRK07550        299 RDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAG-ILCLPGTMFGPGQEGYLRLAFAN--ADVAGI  374 (386)
T ss_pred             HHHHHHHHHhCCCceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcC-EEEeCchhhCCCCCCEEEEEeec--CCHHHH
Confidence            88888999887676543 344445555554312336788888764 56 4454432 2  235699998743  468999


Q ss_pred             HHHHHHHHHH
Q psy3048         338 AFAWNEISHQ  347 (367)
Q Consensus       338 d~li~~l~~~  347 (367)
                      +.+++.|.++
T Consensus       375 ~~~~~~l~~~  384 (386)
T PRK07550        375 GELVERLRAF  384 (386)
T ss_pred             HHHHHHHHhh
Confidence            9999998875

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.66  E-value=7.4e-15  Score=140.59  Aligned_cols=243  Identities=18%  Similarity=0.208  Sum_probs=157.0

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..+.+.    ...+...|++++.++..     |++++++++++.+      .+|.+++++|++|.+.|+++|++
T Consensus        92 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~t------klv~le~P~NP~~~~~dl~~I~~  160 (366)
T PRK08247         92 ELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA-----SLKAIEQAITPNT------KAIFIETPTNPLMQETDIAAIAK  160 (366)
T ss_pred             EEEEecCCcCcHHHHHHHHhhccCceEEEECCC-----CHHHHHHhcccCc------eEEEEECCCCCCCcHHHHHHHHH
Confidence            355556666553    33445689999988753     8999999997765      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|++||+++++|++++...+..+ ..      ..+|+++.+.+|++.++.+  .|+++.+++........ ...+..   
T Consensus       161 la~~~g~~lIvD~t~~~~~~~~p-~~------~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~-~~~~~g---  229 (366)
T PRK08247        161 IAKKHGLLLIVDNTFYTPVLQRP-LE------EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY-YQNAAG---  229 (366)
T ss_pred             HHHHcCCEEEEECCCccccccCc-hh------cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHH-HHHhcC---
Confidence            99999999999999965443221 11      1359999999999997755  45555543333322110 000000   


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                    .....+..+..++  +.+.+..++++..++++.+
T Consensus       230 ----------------------------------------------~~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l  261 (366)
T PRK08247        230 ----------------------------------------------AVLSPFDSWLLIR--GMKTLALRMRQHEENAKAI  261 (366)
T ss_pred             ----------------------------------------------CCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHH
Confidence                                                          0011123333333  3445667778889999999


Q ss_pred             HHHhcCCCCeEEe-CCCCceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEeEE------------C--Cee
Q psy3048         266 ADLVEKDDRFELV-CPPSMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKASF------------Q--GRP  321 (367)
Q Consensus       266 ~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~~~------------~--~~~  321 (367)
                      .+.|+++|++..+ .|+..++++|.+.+ .....++.+.|..  .+       .+.+.|...            .  +.+
T Consensus       262 ~~~L~~~p~v~~v~~P~~gg~~sf~~~~-~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~  340 (366)
T PRK08247        262 AAFLNEQPGVTDVLYPGRGGMLSFRLQD-EEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNR  340 (366)
T ss_pred             HHHHHhCCCeeEEecCCcCcEEEEEECC-HHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCC
Confidence            9999999998754 45577888998754 2233445554331  01       111222110            0  145


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .+|+|+.     -||++.+++.|++.+++
T Consensus       341 ~~R~svG-----lE~~~dl~~dl~~al~~  364 (366)
T PRK08247        341 LLRFSVG-----IENVEDLIADLKQAFKQ  364 (366)
T ss_pred             eEEEEec-----cCCHHHHHHHHHHHHhh
Confidence            8999764     36889999999988764

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.66  E-value=7.3e-15  Score=141.02  Aligned_cols=245  Identities=15%  Similarity=0.175  Sum_probs=158.2

Q ss_pred             eEEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+..    ..+...|+++++++..     |++++++++++++      .+|.+.+++|++|.+.|+++|+
T Consensus        89 d~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-----d~e~l~~ai~~~t------~lV~lesP~Nptg~~~di~~I~  157 (380)
T PRK06176         89 DHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-----DLSQIKKAIKPNT------KALYLETPSNPLLKITDLAQCA  157 (380)
T ss_pred             CEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC-----CHHHHHHhcCcCc------eEEEEECCCCCCceecCHHHHH
Confidence            34555666665543    3345578888888753     8999999987765      4888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|+++++|++++.+....+ .     . ..+|+++++++|++.+|.+  .|+++.++.....+..     .+...
T Consensus       158 ~la~~~gi~vivD~t~a~~~~~~p-~-----~-~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~-----~~~~~  225 (380)
T PRK06176        158 SVAKDHGLLTIVDNTFATPYYQNP-L-----L-LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA-----FFQNA  225 (380)
T ss_pred             HHHHHcCCEEEEECCccccccCCc-c-----c-cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH-----HHHHH
Confidence            999999999999999986533211 1     1 1459999999999998764  5556654444332210     00000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                   .+........|..  ..+.+.+..++++..+.+..
T Consensus       226 ---------------------------------------------~G~~~~~~~~~l~--~~gl~tl~~R~~~~~~~a~~  258 (380)
T PRK06176        226 ---------------------------------------------IGGVLGPQDSWLL--QRGIKTLGLRMEAHQKNALC  258 (380)
T ss_pred             ---------------------------------------------hcCCCCHHHHHHH--HhccCcHHHHHHHHHHHHHH
Confidence                                                         0000011222322  23556667788888899999


Q ss_pred             HHHHhcCCCCeEE-eCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEeE--
Q psy3048         265 FADLVEKDDRFEL-VCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKAS--  316 (367)
Q Consensus       265 l~~~L~~~~g~~~-~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~--  316 (367)
                      +.+.|+++|.+.- ..|     |           ..++++|.+.+ .+...++++.|.--.         .....|..  
T Consensus       259 la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~  337 (380)
T PRK06176        259 VAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN-DSEAVAFVESLKLFILGESLGGVESLVGIPAFMT  337 (380)
T ss_pred             HHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-HHHHHHHHHcCCcceEccCCCCCCceeeCCcccc
Confidence            9999999988753 333     1           23688999865 334456666554211         01111111  


Q ss_pred             E----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 F----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 ~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +          .  ..+.+|+|+.     -||++.+++.|++.++++
T Consensus       338 ~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~Al~~~  379 (380)
T PRK06176        338 HACIPKEQREAAGIRDGLVRLSVG-----IEHEQDLLEDLEQAFAKI  379 (380)
T ss_pred             cccCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHHHhhc
Confidence            0          1  1468999774     368999999999987753

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=3.5e-14  Score=135.35  Aligned_cols=246  Identities=13%  Similarity=0.042  Sum_probs=160.9

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      .|++++.+|..+...++..|++++.++.++++.+|+++|++    .+      .++++++++|+||.+.|.+++.++++.
T Consensus       103 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~~------~~v~~~~P~NPtG~~~~~~~~~~l~~~  172 (353)
T PRK05387        103 PLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR----PN------GGIIFPNPNAPTGIALPLAEIERILAA  172 (353)
T ss_pred             EEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh----cC------CEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            46667778877777788899999999998788999999873    22      367889999999999999999999987


Q ss_pred             c-CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         112 Y-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       112 ~-gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      + |+++++|++|+.+..  .......... .-.+++.+..|.++.| ..+|+++.. ++.+.........+         
T Consensus       173 ~~~~~livDe~y~~~~~--~~~~~~~~~~-~~~i~~~S~SK~~~~~GlR~G~~~~~-~~~~~~l~~~~~~~---------  239 (353)
T PRK05387        173 NPDSVVVIDEAYVDFGG--ESAIPLIDRY-PNLLVVQTFSKSRSLAGLRVGFAIGH-PELIEALNRVKNSF---------  239 (353)
T ss_pred             CCCcEEEEeCcccccCC--cchHHHHhhC-CCEEEEEehhHhhcchhhhceeeecC-HHHHHHHHHhhccC---------
Confidence            5 999999999854211  1111111111 1257888899998744 568888763 33332211000000         


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l~~~  268 (367)
                         ..+                               +      ...+...++...+. .+.+++..++..+..+++.+.
T Consensus       240 ---~~~-------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  279 (353)
T PRK05387        240 ---NSY-------------------------------P------LDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEE  279 (353)
T ss_pred             ---CCC-------------------------------C------cCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence               000                               0      00112222222222 344667777888889999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      |+++ |+++. ++..+.+++.+++  ....++.+.|.++|+. +.+.. ....+++|+++.    +.+++++++++|+++
T Consensus       280 L~~~-g~~~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~-v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~  350 (353)
T PRK05387        280 LEAL-GFEVL-PSKANFVFARHPS--HDAAELAAKLRERGII-VRHFNKPRIDQFLRITIG----TDEEMEALVDALKEI  350 (353)
T ss_pred             HHHC-CCeEC-CCcCcEEEEECCC--CCHHHHHHHHHHCCEE-EEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHH
Confidence            9887 77754 4555666666543  2357888999888854 43221 123569999764    579999999999987


Q ss_pred             HH
Q psy3048         348 SS  349 (367)
Q Consensus       348 ~~  349 (367)
                      +.
T Consensus       351 ~~  352 (353)
T PRK05387        351 LA  352 (353)
T ss_pred             hh
Confidence            54

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=1.9e-14  Score=138.57  Aligned_cols=248  Identities=11%  Similarity=0.006  Sum_probs=163.1

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHH-HHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAV-KEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l-~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      -.|++++.++..+...++..|++++.++.++++.+|+++|++++ .+.+      .+|++++++|+||.+.|.+++.+++
T Consensus       128 d~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~------~~v~l~~P~NPTG~~~~~~~l~~l~  201 (380)
T PLN03026        128 DKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKP------KLLFLTSPNNPDGSIISDDDLLKIL  201 (380)
T ss_pred             CEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCC------cEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            35666677777777778889999999998777899999999998 3443      4888889999999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +.. +++++|++|.-+....... ..+... .-.++..+..|.++ .+..+|+++.. ++.+........+         
T Consensus       202 ~~~-~~vi~DeaY~~~~~~~~~~-~~~~~~-~~viv~~SfSK~~glaGlRiGy~~~~-~~~i~~l~~~~~~---------  268 (380)
T PLN03026        202 ELP-ILVVLDEAYIEFSTQESRM-KWVKKY-DNLIVLRTFSKRAGLAGLRVGYGAFP-LSIIEYLWRAKQP---------  268 (380)
T ss_pred             hcC-CEEEEECcchhhcCCcchH-HHHHhC-CCEEEEecchHhhcCccccceeeecC-HHHHHHHHHhcCC---------
Confidence            865 9999999996543211111 111111 12466788899986 44667777753 3333221110000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l~~  267 (367)
                            |                               .      ...+...++...+. .+-+++..++..+..+++.+
T Consensus       269 ------~-------------------------------~------~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~  305 (380)
T PLN03026        269 ------Y-------------------------------N------VSVAAEVAACAALSNPKYLEDVKNALVEERERLFG  305 (380)
T ss_pred             ------C-------------------------------C------CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence                  0                               0      00122222222221 23456667777888889999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      .|++++++.+ .++..+.+.++++. .....++.+.|.++|+. +.+. ...+.+++||++.    +.+|+++++++|++
T Consensus       306 ~L~~~~~~~~-~p~~~~f~~~~~~~-~~~~~~~~~~l~~~gI~-v~~~~~~~~~~~lRis~~----~~~~~~~l~~al~~  378 (380)
T PLN03026        306 LLKEVPFLEP-YPSDANFILCRVTS-GRDAKKLKEDLAKMGVM-VRHYNSKELKGYIRVSVG----KPEHTDALMEALKQ  378 (380)
T ss_pred             HHHHCCCCeE-CCCCCeEEEEECCC-CCCHHHHHHHHHHCCeE-EEECCCCCCCCEEEEecC----CHHHHHHHHHHHHH
Confidence            9998855554 45667777777653 22356888889888854 4332 2233569999764    57899999999976


Q ss_pred             H
Q psy3048         347 Q  347 (367)
Q Consensus       347 ~  347 (367)
                      +
T Consensus       379 ~  379 (380)
T PLN03026        379 L  379 (380)
T ss_pred             h
Confidence            4

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.66  E-value=2.6e-14  Score=138.44  Aligned_cols=260  Identities=12%  Similarity=0.069  Sum_probs=162.5

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC-CC-CC-cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD-DN-GV-LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~-~~-~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .|++++..+......++..|++++.++.+ ++ +. .++++|++++++.+      .+|++++++|++|.+.   ++++|
T Consensus       114 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~------~~v~i~~p~NPtG~~~~~~~~~~i  187 (397)
T PRK07568        114 EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKT------KAILISNPGNPTGVVYTKEELEML  187 (397)
T ss_pred             EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCccc------eEEEEECCCCCCCccCCHHHHHHH
Confidence            45556666666666677889999999985 23 33 36799999886654      4788889999999985   58899


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +++|+++|+++++|++|+.+.+........  +.+...--+++.+.+|.++. ...+|+++..+++.+..........  
T Consensus       188 ~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~--  265 (397)
T PRK07568        188 AEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQAR--  265 (397)
T ss_pred             HHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhcc--
Confidence            999999999999999998654322111111  11111112566778999874 4678888775444333211000000  


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                  +                               .   ...+....+..+++. +...+++..++..+..
T Consensus       266 ------------~-------------------------------~---~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~  298 (397)
T PRK07568        266 ------------L-------------------------------S---PPTLEQIGAAALLDT-PESYFDEVREEYKKRR  298 (397)
T ss_pred             ------------C-------------------------------C---CCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHH
Confidence                        0                               0   000111222222322 3445677777788888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc------cCcEEEEEe-EE---C--CeeEEEEEecCC
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS------HKQIYIIKA-SF---Q--GRPFLRFVVTSP  330 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~------~g~~~~~~~-~~---~--~~~~lRi~~~~~  330 (367)
                      +.+.+.|++++++.+..|.....++++++..  ...++.+.|.+      .|+. +.++ .+   .  +..++|++++  
T Consensus       299 ~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~gv~-v~pg~~f~~~~~~~~~~iRls~~--  373 (397)
T PRK07568        299 DILYEELNKIPGVVCEKPKGAFYIIAKLPVD--DAEDFAKWLLTDFNYNGETVM-VAPASGFYATPGLGKNEIRIAYV--  373 (397)
T ss_pred             HHHHHHHhcCCCceecCCCcceEEEEecCCC--CHHHHHHHHHhhcccccceEE-EeCchHhcCCCCCCCCeEEEEEe--
Confidence            9999999888777655444333455666532  34577777765      3543 4433 22   1  2469999874  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~  352 (367)
                       .++++++.+++.|.+++++..
T Consensus       374 -~~~~~~~~~~~~l~~~l~~~~  394 (397)
T PRK07568        374 -LNEEDLKRAMEILKEALEKYN  394 (397)
T ss_pred             -CCHHHHHHHHHHHHHHHHHhh
Confidence             257999999999999887643

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.66  E-value=8.7e-15  Score=140.21  Aligned_cols=243  Identities=17%  Similarity=0.208  Sum_probs=156.8

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..+.+....    ....|++++.++.+     +.+++++++++.+      .+|++++++|++|.+.|+++|++
T Consensus        91 ~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~-----~~e~l~~~i~~~t------klV~lesp~Np~g~~~dl~~I~~  159 (377)
T TIGR01324        91 HVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL-----IGEDIATLIQPNT------KVLFLEAPSSITFEIQDIPAIAK  159 (377)
T ss_pred             EEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCCcHHHHHHHHH
Confidence            455566677665543    23468888877643     2378888887765      48999999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|+++++|++|+.+.+.-+ .   ..   .+|+++.+.+||++++.+  .|+++. +++...+...  ..+..+  
T Consensus       160 la~~~g~~livD~t~a~g~~~~p-l---~~---gaDivv~S~tK~l~G~~d~~gG~v~~-~~~~~~~l~~--~~~~~G--  227 (377)
T TIGR01324       160 AARNPGIVIMIDNTWAAGLLFKP-L---EH---GVDISIQAGTKYLVGHSDIMIGTVVA-NARTWDQLRE--HSYLMG--  227 (377)
T ss_pred             HHHHcCCEEEEECCCccccccCc-c---cc---CceEEEecCceeccCCCCceEEEEEe-CHHHHHHHHH--HHHHhC--
Confidence            99999999999999987655321 1   12   359999999999998865  344444 4433332210  011100  


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                    ....+...|..++  +.+-+..+++++.+.+..+
T Consensus       228 ----------------------------------------------~~l~p~~a~~~~r--gl~tl~~R~~~~~~~a~~l  259 (377)
T TIGR01324       228 ----------------------------------------------QMVDADDAYTTLR--GLRTLGVRLKQHQESSLAI  259 (377)
T ss_pred             ----------------------------------------------CCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHH
Confidence                                                          0011233444443  4455667788899999999


Q ss_pred             HHHhcCCCCe-EEeCC-----C-----------CceeEEEEEcC-CchHHHHHHHHHhccCc---------EEE--EEe-
Q psy3048         266 ADLVEKDDRF-ELVCP-----P-----------SMGLVCFRLKG-DNDLTNQLYERLMSHKQ---------IYI--IKA-  315 (367)
Q Consensus       266 ~~~L~~~~g~-~~~~~-----~-----------~~~~v~f~~~~-~~~~~~~l~~~L~~~g~---------~~~--~~~-  315 (367)
                      .+.|+++|.+ ++..|     |           ..++++|++++ ..+...++.+.|...+.         +..  .+. 
T Consensus       260 a~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~  339 (377)
T TIGR01324       260 AKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPEL  339 (377)
T ss_pred             HHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCC
Confidence            9999999877 44443     1           25788999964 23334567776653321         111  000 


Q ss_pred             EE-------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         316 SF-------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       316 ~~-------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .+       -..+.+|+|+.     -||.+.+++.|++.++.
T Consensus       340 ~~~~~~~~~~~~~liR~svG-----lE~~~dl~~dl~~al~~  376 (377)
T TIGR01324       340 GHRPNIKRNLEGPLIRVHIG-----LENVDDLKADLKAGFEA  376 (377)
T ss_pred             CHHHHHhccCCCCEEEEEeC-----CCCHHHHHHHHHHHHhc
Confidence            00       01258999774     36788888888888763

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.66  E-value=8.5e-15  Score=140.48  Aligned_cols=245  Identities=17%  Similarity=0.178  Sum_probs=158.5

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.++...+    ...|+++++++.+     +.+.+++++++++      .+|++++++|++|.+.|+++|++
T Consensus       102 ~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~T------klV~lespsNPtg~v~dl~~I~~  170 (394)
T PRK09028        102 HLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPNT------KVLFLESPGSITMEVQDVPTLSR  170 (394)
T ss_pred             EEEEECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHHH
Confidence            4555666776765533    3468888887653     5688998887766      48999999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|++++||++|+.+.. ..+.+   .   .+|+++.++|||++++.+  .|+ ++.++....+... ...++    
T Consensus       171 la~~~g~~lvvD~t~a~p~~-~~Pl~---~---GaDivv~S~tK~l~Gh~d~~~G~-~~~~~~~~~~l~~-~~~~~----  237 (394)
T PRK09028        171 IAHEHDIVVMLDNTWASPIN-SRPFE---M---GVDISIQAATKYIVGHSDVMLGT-ATANEKHWDQLRE-HSYLM----  237 (394)
T ss_pred             HHHHcCCEEEEECCcccccc-CCccc---c---CceEEEEeCCeEecCCCCEEEEE-EECCHHHHHHHHH-HHHhc----
Confidence            99999999999999987543 22211   1   359999999999998843  233 3434332221100 00000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +....+...|..  ..|.+-+.-+++++.+.+..+
T Consensus       238 ---------------------------------------------G~~~~p~~a~l~--~rgl~TL~lR~~~~~~na~~l  270 (394)
T PRK09028        238 ---------------------------------------------GQCTSPDDVYLA--MRGLRTLGVRLAQHEKNALKV  270 (394)
T ss_pred             ---------------------------------------------CCCCCHHHHHHH--HcccCcHHHHHHHHHHHHHHH
Confidence                                                         011123444433  346677888999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcC-CchHHHHHHHHHhccC---------cEEEEEeE--
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKG-DNDLTNQLYERLMSHK---------QIYIIKAS--  316 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~-~~~~~~~l~~~L~~~g---------~~~~~~~~--  316 (367)
                      .+.|+++|.++ +..|     |           ..++++|.+++ ..+...++.+.|.--.         .....|..  
T Consensus       271 a~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~  350 (394)
T PRK09028        271 ANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGIN  350 (394)
T ss_pred             HHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcC
Confidence            99999999874 4444     1           24699999963 2233446666553111         00111100  


Q ss_pred             ---E-----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         317 ---F-----QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       317 ---~-----~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                         .     ...+.+|+|+.     -||.+.+++.|++.++..+
T Consensus       351 ~~~~~~~~~~~~~liR~svG-----lEd~~dLi~Dl~~Al~~~~  389 (394)
T PRK09028        351 KLRTATNWDFSKPLIRLHIG-----LEDVDDLIADLEAGFERYN  389 (394)
T ss_pred             ccCchhhhcCCCCeEEEEeC-----cCCHHHHHHHHHHHHHHHH
Confidence               0     01258999874     3578888888888877543

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.66  E-value=1.3e-14  Score=141.56  Aligned_cols=288  Identities=11%  Similarity=0.074  Sum_probs=175.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...++...|++++.++++ +++.+|++++++++.+.+      .+|++++   ++|...|+++|.++
T Consensus       111 Gd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~t------kaVi~~~---~~G~p~dl~~I~~l  181 (438)
T PRK15407        111 GDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKT------KAIMIAH---TLGNPFDLAAVKAF  181 (438)
T ss_pred             CCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCC------eEEEEeC---CCCChhhHHHHHHH
Confidence            4457778899999999999999999999986 578999999999987655      3666665   36888899999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC---
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD---  185 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~---  185 (367)
                      |++||+++++|+||+.+....+..-   ..++.+-++++...|.+.+..| |++++++++........ ..+ +...   
T Consensus       182 a~~~gi~vIeDaa~a~G~~~~g~~~---G~~gd~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~-~~~-G~~~~~~  255 (438)
T PRK15407        182 CDKHNLWLIEDNCDALGSTYDGRMT---GTFGDIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESF-RDW-GRDCWCA  255 (438)
T ss_pred             HHHCCCEEEEECccchhhhcCCeee---eccCceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHH-HHh-Ccccccc
Confidence            9999999999999988765433211   1123334556666677776554 88888776544332100 000 0000   


Q ss_pred             CCCCCC-CCCchhhhhhcccCCCcchhccCCCCCCCCccccc-cccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQ-SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHW-QTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       186 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ...... ...+   .|.  ....|..+ .          ..+ ....|-++++-.+.+++...+.+.++++.++.+++++
T Consensus       256 ~~~~~~~~~~~---~~~--~~~~~~~~-~----------~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~  319 (438)
T PRK15407        256 PGCDNTCGKRF---GWQ--LGELPFGY-D----------HKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFA  319 (438)
T ss_pred             ccccccccccc---ccc--cccccccc-c----------ccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000 0000   000  00000000 0          000 0112334455667777777778889999999999999


Q ss_pred             HHHHHhcCCCCeE-EeC-CCCc----eeEEEEEcCC-chHHHHHHHHHhccCcEE----EEEeEE-----------CC--
Q psy3048         264 KFADLVEKDDRFE-LVC-PPSM----GLVCFRLKGD-NDLTNQLYERLMSHKQIY----IIKASF-----------QG--  319 (367)
Q Consensus       264 ~l~~~L~~~~g~~-~~~-~~~~----~~v~f~~~~~-~~~~~~l~~~L~~~g~~~----~~~~~~-----------~~--  319 (367)
                      ++.+.|+.+++.. +.. ++..    ....+.+... ....+++.+.|.++|+-.    ..+...           ..  
T Consensus       320 ~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~  399 (438)
T PRK15407        320 YLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGEL  399 (438)
T ss_pred             HHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCC
Confidence            9999999887532 222 2221    1223334321 112468888998888521    101000           00  


Q ss_pred             -------eeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         320 -------RPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       320 -------~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                             ...+-+ +.++..+++|+++++++|+++++
T Consensus       400 P~ae~~~~~~l~L-P~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        400 TNTDRIMNDTFWI-GVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             hHHHHHHhCeEEe-cCCCCCCHHHHHHHHHHHHHHHh
Confidence                   112333 35667789999999999999864

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=1.6e-14  Score=137.88  Aligned_cols=248  Identities=12%  Similarity=0.053  Sum_probs=164.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.++..+...++..|++++.++.++++.+|+++|++++.+..     +.+|++++++|+||.+.+.+++.+++
T Consensus       105 gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~i~  179 (356)
T PRK04870        105 GATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHR-----PALVFLAYPNNPTGNLFDDADVERII  179 (356)
T ss_pred             CCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCC-----CCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            3456777889999999999999999999998788999999999986422     24777889999999999988888888


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      +..++++++|++|..+..  +.....+....+ .++..+..|++..+..+|+++.. +..+.........          
T Consensus       180 ~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~-vi~~~S~SK~~~~GlRiG~~i~~-~~~i~~~~~~~~~----------  245 (356)
T PRK04870        180 EAAPGLVVVDEAYQPFAG--DSWLPRLARFPN-LLVMRTVSKLGLAGLRLGYLAGH-PAWIAELDKVRPP----------  245 (356)
T ss_pred             HHCCCEEEEECCchhhcC--cchHHHHhhCCC-EEEEecchhhhhHHHhhhhhhCC-HHHHHHHHHccCC----------
Confidence            776899999999865322  111111111111 46777789954333458887763 2333221110000          


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                                                          |..   ..+.......+++.  .+.+++..++..+.++++.+.|
T Consensus       246 ------------------------------------~~~---~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L  284 (356)
T PRK04870        246 ------------------------------------YNV---NVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAAL  284 (356)
T ss_pred             ------------------------------------CcC---CHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHH
Confidence                                                000   00111112222221  2346777778888999999999


Q ss_pred             cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EE--CCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         270 EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SF--QGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       270 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~--~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      ++++|+.+. ++..+.++++++.    ..++.+.|.++|+. +.+. .+  ...+++|+++.    +.+++++|+++|++
T Consensus       285 ~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~l~~~gI~-v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~  354 (356)
T PRK04870        285 AALPGVTVF-PSAANFILVRVPD----AAAVFDGLKTRGVL-VKNLSGMHPLLANCLRVTVG----TPEENAQFLAALKA  354 (356)
T ss_pred             HhCCCcEEC-CCCCeEEEEECCC----HHHHHHHHHHCCEE-EEECCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHH
Confidence            988888754 5556677776642    46788888888854 4433 22  23569999764    58999999999987


Q ss_pred             H
Q psy3048         347 Q  347 (367)
Q Consensus       347 ~  347 (367)
                      +
T Consensus       355 ~  355 (356)
T PRK04870        355 A  355 (356)
T ss_pred             h
Confidence            5

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.66  E-value=9.8e-15  Score=139.27  Aligned_cols=244  Identities=10%  Similarity=0.009  Sum_probs=155.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++.+..+..+...++..|++++.++.++++.+|++.+++ + +.+      .+|++++++|+||.+.|.+++.++++
T Consensus       103 d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~~~------~li~i~nP~NPTG~~~~~~~l~~l~~  174 (354)
T PRK04635        103 DSIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIEQ-L-DGA------KLVFICNPNNPTGTVIDRADIEQLIE  174 (354)
T ss_pred             CeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHh-c-cCC------CEEEEeCCCCCCCccCCHHHHHHHHH
Confidence            456667788888888888899999999998778899998873 3 333      47888999999999999999999988


Q ss_pred             h-cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 E-YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~-~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      . .++++++|++|.-+.... ..........+ -++..+.+|+++ .+..+|+++.. ++.+........+         
T Consensus       175 ~~~~~~vivDeay~~~~~~~-s~~~~~~~~~~-~iv~~S~SK~~~l~GlRlG~~i~~-~~~~~~l~~~~~~---------  242 (354)
T PRK04635        175 MTPDAIVVVDEAYIEFCPEY-SVADLLASYPN-LVVLRTLSKAFALAGARCGFTLAN-EELIEILMRVIAP---------  242 (354)
T ss_pred             hCCCcEEEEeCchHhhccCc-chHHHHhhCCC-EEEEechHHHhhhhHHHHhhhhCC-HHHHHHHHhhcCC---------
Confidence            6 379999999986543111 10000111111 245677899986 44567888764 3333221100000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---LKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~~~~~~~la~~l  265 (367)
                            |                               ..      ......+++..+.   .+.+++..++..+.++++
T Consensus       243 ------~-------------------------------~~------~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  279 (354)
T PRK04635        243 ------Y-------------------------------PV------PLPVSEIATQALSEAGLARMKFQVLDLNAQGARL  279 (354)
T ss_pred             ------C-------------------------------CC------CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence                  0                               00      0011122222222   233455555667777889


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      .+.|++++++++. ++..+.+.++++.    ..++.+.|.++|+. +.... ....+++|+++.    +++|+++++++|
T Consensus       280 ~~~L~~~~~~~~~-~~~g~f~~~~~~~----~~~~~~~l~~~gv~-v~~~~~~~~~~~lRis~~----~~e~~~~l~~al  349 (354)
T PRK04635        280 QAALSMYGGAKVL-EGNGNYVLAKFDD----VDAVFKALWDAGIV-ARAYKDPRLANCIRFSFS----NRAETDKLIGLI  349 (354)
T ss_pred             HHHHHhCCCceEC-CCCCcEEEEECCC----HHHHHHHHHHCCEE-EEECCCCCCCCeEEEEeC----CHHHHHHHHHHH
Confidence            9999988767765 4444555555542    45777788878743 33221 223568999753    689999999999


Q ss_pred             HHH
Q psy3048         345 SHQ  347 (367)
Q Consensus       345 ~~~  347 (367)
                      ++.
T Consensus       350 ~~~  352 (354)
T PRK04635        350 RNQ  352 (354)
T ss_pred             HHh
Confidence            763

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.66  E-value=7e-15  Score=139.86  Aligned_cols=250  Identities=13%  Similarity=0.025  Sum_probs=162.3

Q ss_pred             HHHHhCCc-ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccc
Q psy3048          45 KSAIIGDV-PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA  123 (367)
Q Consensus        45 ~~~~~~g~-~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~  123 (367)
                      +.++..|+ +++.+..+.+..+++++++.    . +      -|+++|+.|+||+.+|+++|++.+  +++.++||+..+
T Consensus        99 eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~-~------~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs  165 (374)
T TIGR01365        99 DVTKQLKLPDVRVLEAEYGKLPDLKKVDF----K-N------DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSA  165 (374)
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCCHHHcCC----C-C------CEEEecCCCchheecccccccccc--CCCcEEEEccch
Confidence            67777899 58888877778899999983    1 1      256999999999999998777433  589999999877


Q ss_pred             cccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCc-----cccccCCCCCCCCCCCchhh
Q psy3048         124 GSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDR-----VYLKHTDAPMNTQSPDYTVM  198 (367)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~-----~yl~~~~~~~~~~~~~~~~~  198 (367)
                      .+..+.+-     .   .+|++..+++|+|++|+|++++.++++. +++.-...+     .|+....      ...|   
T Consensus       166 ~g~~~l~~-----d---~iDv~~tgsQK~L~~ppGls~v~vs~~A-l~~~~~~~~y~~~~~~~~~~~------~~~~---  227 (374)
T TIGR01365       166 AFAQDLDY-----H---KLDVVTFSWQKVLGGEGAHGMLILSPRA-VARLESYTPAWPLPKIFRLTK------GGKL---  227 (374)
T ss_pred             hcCCCCCh-----h---HCcEEEEechhccCCCCceEEEEECHHH-HHHHhhcCCCCCChhhhcccc------ccch---
Confidence            66654432     1   2499999999999999999999997654 332211111     1111000      0000   


Q ss_pred             hhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy3048         199 NWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEKDDRFE  276 (367)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L~~~~g~~  276 (367)
                       | .+        +           ...++..++. +....+..+++.+..+ |++++.+|+.++++.+++.+++++.++
T Consensus       228 -~-~~--------~-----------~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~  286 (374)
T TIGR01365       228 -N-KK--------I-----------FEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIH  286 (374)
T ss_pred             -h-hh--------h-----------hcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence             0 00        0           0000111111 1123333445555565 899999999999999999999984377


Q ss_pred             EeCC-C--Cc-eeEEEEEcCCch-----H-----HHHHHHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHH
Q psy3048         277 LVCP-P--SM-GLVCFRLKGDND-----L-----TNQLYERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       277 ~~~~-~--~~-~~v~f~~~~~~~-----~-----~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li  341 (367)
                      ++.+ +  .+ .++++++++...     .     ..++.+.|.++|. .+.++... ....+||. +.+..+.+||+.++
T Consensus       287 ~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~i~~G~~~~~~~~fRIg-~~G~i~~~di~~l~  364 (374)
T TIGR01365       287 FLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGV-AYDIGSYRDAPSGLRIW-CGATVEKSDLECLC  364 (374)
T ss_pred             cCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCE-EEeccccccCCCceEEe-cCCcCCHHHHHHHH
Confidence            7653 2  33 345566643211     2     4678888888874 44433222 23689994 57888999999999


Q ss_pred             HHHHHHH
Q psy3048         342 NEISHQS  348 (367)
Q Consensus       342 ~~l~~~~  348 (367)
                      +.|.=+-
T Consensus       365 ~~l~~~~  371 (374)
T TIGR01365       365 PWLDWAF  371 (374)
T ss_pred             HHHHHHH
Confidence            9987553

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.66  E-value=8.6e-15  Score=142.48  Aligned_cols=277  Identities=16%  Similarity=0.198  Sum_probs=165.3

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|...    ...+...|+++++++..     |++++++++++.+      .+|++++++|++|.+.|+++|++
T Consensus       105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~t------klV~l~sp~NPtG~v~di~~I~~  173 (431)
T PRK08248        105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITDKT------KALFAETIGNPKGDVLDIEAVAA  173 (431)
T ss_pred             EEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHH
Confidence            455666666543    33455689999999863     8999999997655      47788899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhhhccCCccc--cccC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVY--LKHT  184 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~y--l~~~  184 (367)
                      +||++|+++++|++++.+....+ ..   .+   +|+++.+.|||+++|. .+|.+++.+....-   .....|  +...
T Consensus       174 la~~~gi~vIvD~t~a~~~~~~p-l~---~g---aDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~---~~~~~~~~~~~~  243 (431)
T PRK08248        174 IAHEHGIPLIVDNTFASPYLLRP-IE---HG---ADIVVHSATKFIGGHGTSIGGVIVDSGKFDW---KGSGKFPGLTEP  243 (431)
T ss_pred             HHHHcCCEEEEeCCCCccccCCh-hH---cC---CCEEEEcCccccCCCCCceEEEEEeCCcccc---ccccccccccCC
Confidence            99999999999999975433222 11   23   5999999999999875 36776664332110   000000  1000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..     .... + .|.... +-+.++...        ...+....+....++..|  +...|.+-+..+++++.+++.+
T Consensus       244 ~~-----~~~~-~-~~~~~~-~~~~~~~~~--------~~~~~~~~G~~l~p~~a~--l~~rgl~tl~~R~~~~~~nA~~  305 (431)
T PRK08248        244 DP-----SYHG-L-VYTDAV-GEAAYITKA--------RVQLLRDLGAALSPFNSF--LLLQGLETLHLRMERHSENALA  305 (431)
T ss_pred             cc-----cccc-c-hhhhhh-chhhHHHHH--------HHHHHHhcCCCCCHHHHH--HHhcCcCcHHHHHHHHHHHHHH
Confidence            00     0000 0 000000 000000000        000011112223334444  3344666778899999999999


Q ss_pred             HHHHhcCCCCeE-EeCC-----C------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--
Q psy3048         265 FADLVEKDDRFE-LVCP-----P------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--  315 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--  315 (367)
                      +.+.|+++|++. +..|     |            ..++++|.+.+......++.++|.--.         .....|.  
T Consensus       306 la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~  385 (431)
T PRK08248        306 VAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPAST  385 (431)
T ss_pred             HHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcC
Confidence            999999999876 4433     1            135889998653333456666654211         0111111  


Q ss_pred             EE----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 SF----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 ~~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .+          .  .++.+|+|+.     -||++.+++.|++.++.++
T Consensus       386 ~h~~~~~~~~~~~gi~~~liRlsvG-----lEd~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        386 THQQLSEEEQLAAGVTPGLVRLSVG-----TEAIDDILDDLRQAIRQSQ  429 (431)
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence            00          1  1568999874     3689999999999887654

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.66  E-value=8e-15  Score=140.69  Aligned_cols=241  Identities=15%  Similarity=0.178  Sum_probs=157.2

Q ss_pred             EEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+...    .+...|+++++++..     |++++++++++++      .+|++++++|++|.+.|+++|.+
T Consensus        90 ~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~  158 (377)
T PRK07671         90 HVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS-----NLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKIST  158 (377)
T ss_pred             EEEECCCccchHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHH
Confidence            45667777765443    334578999888743     8999999998766      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|+++|+++++|++++...... ...   .   .+|+++.+.+||+++|.+  .|+++++++...++.. ....+.    
T Consensus       159 la~~~g~~lvvD~a~~~~~~~~-p~~---~---g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~-~~~~~~----  226 (377)
T PRK07671        159 IAKEKGLLTIVDNTFMTPYWQS-PIS---L---GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLH-FVQNST----  226 (377)
T ss_pred             HHHHcCCEEEEECCCCccccCC-hhh---h---CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHH-HHHHhh----
Confidence            9999999999999997643321 111   1   359999999999998864  4556665544333221 000000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +........|..++  +.+-+..++++..+++..+
T Consensus       227 ---------------------------------------------g~~~~~~~a~l~~~--~l~tl~~R~~~~~~na~~l  259 (377)
T PRK07671        227 ---------------------------------------------GGILGPQDSWLLLR--GLKTLGIRMEEHETNSRAI  259 (377)
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHc--CcChHHHHHHHHHHHHHHH
Confidence                                                         00011233343333  3445666888899999999


Q ss_pred             HHHhcCCCCeEEe-CCC----------------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFELV-CPP----------------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~--~~  317 (367)
                      .+.|+++|++.-+ .|.                ..++++|.+ +..+...++.++|.-  .+       .....|.  .+
T Consensus       260 a~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~-~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~  338 (377)
T PRK07671        260 AEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV-GSEETANKVLERLQYFTLAESLGAVESLISIPSQMTH  338 (377)
T ss_pred             HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe-CCHHHHHHHHHhCCcceEccCCCCCCeEeECCCcccc
Confidence            9999999987543 331                236889988 323334566665532  11       0111111  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                                .  ..+.+|+|+.     -||.+.+++.|++.+
T Consensus       339 ~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al  376 (377)
T PRK07671        339 ASIPADRRKELGITDGLIRISVG-----IEDGEDLIEDLAQAL  376 (377)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHh
Confidence                      0  2468999774     367888888888765

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.66  E-value=9.3e-15  Score=142.14  Aligned_cols=277  Identities=18%  Similarity=0.210  Sum_probs=165.4

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+.....    ...|+++++++ +.   .|++++++++++.+      .+|++.+++|++|.+.|+++|++
T Consensus       110 ~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~t------klV~ie~~sNp~G~v~Dl~~I~~  179 (436)
T PRK07812        110 HIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPNT------KAFFAETISNPQIDVLDIPGVAE  179 (436)
T ss_pred             EEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCCC------eEEEEECCCCCCCeecCHHHHHH
Confidence            4556667777765433    33688888885 22   28999999987665      48889999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchh-hhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANH-LTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~-~~~~~~~~~~yl~~~~  185 (367)
                      +||++|++++||++|+.+.+..+ ..   .   .+|+++.++|||++++.+ +|.+++..... ...     ..+.... 
T Consensus       180 la~~~gi~liVD~t~a~~~~~~p-l~---~---GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~-----~~~~~~~-  246 (436)
T PRK07812        180 VAHEAGVPLIVDNTIATPYLIRP-LE---H---GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQ-----GRFPGFT-  246 (436)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-hh---c---CCCEEEEecccccCCCCCeEEEEEEcCCcccccc-----ccccccc-
Confidence            99999999999999987544321 11   2   359999999999986632 56666643211 100     0011000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                          ...+.|.-..+..  ++.++......        ..+....|.....+..|  +...|.+.+..++++..+.+..+
T Consensus       247 ----~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~G~~l~p~~a~--l~~rgl~tL~~R~~~~~~nA~~l  310 (436)
T PRK07812        247 ----TPDPSYHGVVFAE--LGPPAYALKAR--------VQLLRDLGSAISPFNAF--LIAQGLETLSLRIERHVANAQRV  310 (436)
T ss_pred             ----cCCcccccchhhh--cchhHHHHHHH--------HHHHHhcCCCCCHHHHH--HHhcCcCcHHHHHHHHHHHHHHH
Confidence                0001110000000  00000000000        00000112222334444  44457778899999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C------------CceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEeE--
Q psy3048         266 ADLVEKDDRFE-LVCP-----P------------SMGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKAS--  316 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~--  316 (367)
                      .+.|+++|++. +..|     |            ..++++|.+.+......++.+.|.--..         ..+.|..  
T Consensus       311 a~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~  390 (436)
T PRK07812        311 AEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTT  390 (436)
T ss_pred             HHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCC
Confidence            99999999875 4444     1            1368899986533345567776542110         0111110  


Q ss_pred             ---E-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         317 ---F-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       317 ---~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                         .       .  ..+.+|+|+.     -||++.+++.|++.++.++
T Consensus       391 h~~~~~~~~~~~gi~~~liRlSvG-----lEd~~dli~dl~~Al~~~~  433 (436)
T PRK07812        391 HSQLTPEEQLATGVTPGLVRLAVG-----IEGIDDILADLEAGFAAAK  433 (436)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhhh
Confidence               0       1  1458999774     3689999999999888654

>KOG0259|consensus

Probab=99.66  E-value=1.5e-14  Score=131.94  Aligned_cols=271  Identities=13%  Similarity=0.113  Sum_probs=178.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      +-.|+.++.++.-...-+.+.|++|+.+++  +++|.+|++.+|+.++++|      +.++++.|+|+.|.+   +=+++
T Consensus       150 ~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT------~AivviNP~NPcGnVys~~HL~k  223 (447)
T KOG0259|consen  150 GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENT------VAIVVINPNNPCGNVYSEDHLKK  223 (447)
T ss_pred             CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCe------eEEEEeCCCCCCcccccHHHHHH
Confidence            455566666655555566778999999877  5789999999999999998      588889999999998   56899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecc-cc-ccccCCcceeEEEecchh-hhhhc--cCCcc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNA-HK-WLLTNHDCSAMWVKNANH-LTNTF--FTDRV  179 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~-hK-~l~~p~g~g~l~~~~~~~-~~~~~--~~~~~  179 (367)
                      |+++|+++|++++.|+.|+-..+....+-+...=.+.+-+++.++ .| |+--++.+||+.+.++.- ++...  .....
T Consensus       224 iae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~  303 (447)
T KOG0259|consen  224 IAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKN  303 (447)
T ss_pred             HHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHHHHHHH
Confidence            999999999999999998766554333222100012346666663 45 555459999999977532 21110  00001


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      ++..                               ..+|.             .+-+-++-..|..-.++-+++...-..
T Consensus       304 ~~~~-------------------------------~~~p~-------------TiiQ~AlP~IL~kTp~efF~k~~~~lk  339 (447)
T KOG0259|consen  304 FLDI-------------------------------IPGPA-------------TIIQGALPDILEKTPEEFFDKKLSFLK  339 (447)
T ss_pred             HHhc-------------------------------cCCcc-------------HhHHHHhHHHHHhChHHHHHHHHHHHH
Confidence            1100                               01110             011122233344444556777777788


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCC-CceeEEEEEcCC----chHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCC
Q psy3048         260 SLAKKFADLVEKDDRFELVCPP-SMGLVCFRLKGD----NDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETN  333 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~----~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~  333 (367)
                      .+++.-.++|+++|++.+...| ......+.+.-.    -+..-+++.+|..+-.+++-|+. +.-++++|+++..   .
T Consensus       340 ~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~---~  416 (447)
T KOG0259|consen  340 SNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITV---E  416 (447)
T ss_pred             hhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEcc---C
Confidence            8899999999999999966544 333333333211    12234788888877766655544 4458899997654   5


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q psy3048         334 QCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~~  353 (367)
                      .++++.++++|+++.++..+
T Consensus       417 ~~~leea~~Rik~Fc~RH~~  436 (447)
T KOG0259|consen  417 EEMLEEAFSRIKEFCDRHSK  436 (447)
T ss_pred             hHHHHHHHHHHHHHHHhhhh
Confidence            78999999999999987663

>PLN02656 tyrosine transaminase

Probab=99.65  E-value=1.9e-14  Score=139.95  Aligned_cols=262  Identities=10%  Similarity=0.004  Sum_probs=163.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++++.+|..+...+...|++++.++++  +++.+|+++|++++++.+      .++++++++|+||.+   +++++|
T Consensus       121 d~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~P~NPtG~~~s~~~~~~i  194 (409)
T PLN02656        121 ANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNT------VALVIINPGNPCGNVYSYQHLKKI  194 (409)
T ss_pred             CeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCc------eEEEEECCCCCCCCCCCHHHHHHH
Confidence            356667888888888888899999999984  357899999999886654      478888999999999   579999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeeccccc-cccCCcceeEEEecc-------hhhhhhcc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKW-LLTNHDCSAMWVKNA-------NHLTNTFF  175 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~-l~~p~g~g~l~~~~~-------~~~~~~~~  175 (367)
                      +++|++||+++++|++|+...+........  +... .--++..+..|. +..+..+|+++..++       ..+.....
T Consensus       195 ~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~  273 (409)
T PLN02656        195 AETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI-VPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKK  273 (409)
T ss_pred             HHHHHHcCCEEEEehhhhhcccCCCCcccHHHhccc-CcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHH
Confidence            999999999999999998654422111110  1111 113556678998 444488999887432       22221100


Q ss_pred             CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHH
Q psy3048         176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       176 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                      . .... .                                              +...+.+..+..++.......+++..
T Consensus       274 ~-~~~~-~----------------------------------------------~~s~~~q~a~~~~l~~~~~~~~~~~~  305 (409)
T PLN02656        274 Y-FDIL-G----------------------------------------------GPATFIQAAVPTILEQTDESFFKKTI  305 (409)
T ss_pred             H-Hhhh-c----------------------------------------------CCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence            0 0000 0                                              00001112222233221234567777


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCC-CceeEEEEEcCC---c-hHHHHH-HHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPP-SMGLVCFRLKGD---N-DLTNQL-YERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~---~-~~~~~l-~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      ++..+..+++.+.|++++++....+| ....++++++..   + ....++ .+.+.++|+....++.+...+++|++++.
T Consensus       306 ~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~  385 (409)
T PLN02656        306 NILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAA  385 (409)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCC
Confidence            77888888899999887655433334 334455555310   0 113344 44556677544433344446799998753


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~  350 (367)
                         ++++++..++.|++++++
T Consensus       386 ---~~e~l~eal~rl~~~~~~  403 (409)
T PLN02656        386 ---DPSSLEEALGRIKSFYLR  403 (409)
T ss_pred             ---CHHHHHHHHHHHHHHHHH
Confidence               588899999988887664

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.65  E-value=1.3e-14  Score=140.37  Aligned_cols=242  Identities=14%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             EEEecCCcchh----HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s----~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|..    +...+...|+++++++.+     |+++++++++++++      +|++.+++|++|.+.|+++|++
T Consensus       111 ~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~tk------lV~~esp~Nptg~v~dl~~I~~  179 (403)
T PRK07810        111 RLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVPTQ------AVFFETPSNPMQSLVDIAAVSE  179 (403)
T ss_pred             EEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCce------EEEEECCCCCCCeecCHHHHHH
Confidence            45566655533    334456689999999753     89999999987663      8888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|++++||++|+.+....+ ..   .   .+|+++.+++|+++++..  .|+++.++ +.+...+.   .+.... 
T Consensus       180 la~~~g~~vivD~a~a~~~~~~~-~~---~---gaDivv~S~tK~l~g~g~~~gG~v~~~~-~~~~~~l~---~~~~~~-  247 (403)
T PRK07810        180 LAHAAGAKVVLDNVFATPLLQRG-LP---L---GADVVVYSGTKHIDGQGRVLGGAILGDR-EYIDGPVQ---KLMRHT-  247 (403)
T ss_pred             HHHHcCCEEEEECCCCccccCCh-hh---c---CCcEEEccCCceecCCcCceeEEEEeCh-HHHHHHHH---HHHHHh-
Confidence            99999999999999976544221 11   1   359999999999986532  46665543 32321110   010000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                   +.....+..|..+  .+.+-+..++++..+++.++
T Consensus       248 ---------------------------------------------g~~~s~~~a~l~l--~~L~tl~~R~~~~~~~a~~~  280 (403)
T PRK07810        248 ---------------------------------------------GPALSAFNAWVLL--KGLETLALRVRHSNASALRI  280 (403)
T ss_pred             ---------------------------------------------CCCCCHHHHHHHH--hccCcHHHHHHHHHHHHHHH
Confidence                                                         0001123333333  35667888999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCC----chHHHHHHHHHhccC---------cEEEEEe
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGD----NDLTNQLYERLMSHK---------QIYIIKA  315 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~----~~~~~~l~~~L~~~g---------~~~~~~~  315 (367)
                      .+.|+++|++. +..|     |           ..++++|.+.+.    .+...+++++|.--.         .+...|.
T Consensus       281 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~  360 (403)
T PRK07810        281 AEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPA  360 (403)
T ss_pred             HHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCCC
Confidence            99999999875 4433     2           246889998641    223345555432111         1111111


Q ss_pred             E-----E-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         316 S-----F-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       316 ~-----~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      .     .       .  +.+.+|+|+.     -||++.+++.|++.+
T Consensus       361 ~~~h~~~~~~~~~~~gi~~~lvR~svG-----lE~~~dli~dl~~Al  402 (403)
T PRK07810        361 TTTHRAMGPEGRAAIGLGDGVVRLSVG-----LEDTDDLIADLDRAL  402 (403)
T ss_pred             ccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHhh
Confidence            0     0       0  2458999764     367888888888763

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.65  E-value=2.1e-14  Score=139.00  Aligned_cols=254  Identities=11%  Similarity=0.024  Sum_probs=156.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.++......+...|++++.++.+.  ++.+|+++|++++.+.+      .++++++++|+||.+-+   +++
T Consensus       121 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~P~NPtG~~~s~~~~~~  194 (394)
T PRK05942        121 GDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQA------KILYFNYPSNPTTATAPREFFEE  194 (394)
T ss_pred             CCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccccc------eEEEEcCCCCCCCCcCCHHHHHH
Confidence            34577778899888888888999999998863  46799999999886544      47888899999999976   889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+.......  .+.+.....+.+.+..|.++ .+..+|+++.. +..++...... .+.
T Consensus       195 i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~-~~l~~~l~~~~-~~~  272 (394)
T PRK05942        195 IVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGN-RHIIQGLRTLK-TNL  272 (394)
T ss_pred             HHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecC-HHHHHHHHHHH-hhc
Confidence            999999999999999998755432111000  01111122455677889885 44568988763 33333211000 000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                                  .+                               ..   ..+....+..+++ ...+.+++..++..+.
T Consensus       273 ------------~~-------------------------------~~---~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~  305 (394)
T PRK05942        273 ------------DY-------------------------------GI---FSALQKAAETALQ-LPDSYLQQVQERYRTR  305 (394)
T ss_pred             ------------cc-------------------------------CC---CHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence                        00                               00   0011122223333 2345667777778888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCce-eEEEEEcCCchHHHHHHHHHh-ccCcEEEEEe-EE--CCeeEEEEEecCCCCCHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMG-LVCFRLKGDNDLTNQLYERLM-SHKQIYIIKA-SF--QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~-~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~-~~--~~~~~lRi~~~~~~~~~ed  336 (367)
                      .+++.+.|++. |+.+.. +..+ .++++++. .....++.+++. +.|+ .+.++ .+  .+..++|+++..      +
T Consensus       306 ~~~~~~~L~~~-~~~~~~-~~~~~f~~~~~~~-~~~~~~~~~~~l~~~gV-~v~~g~~f~~~~~~~iRis~~~------~  375 (394)
T PRK05942        306 RDFLIQGLGEL-GWNIPP-TKATMYLWVPCPV-GMGSTDFALNVLQKTGV-VVTPGNAFGEGGEGYVRISLIA------D  375 (394)
T ss_pred             HHHHHHHHHHC-CCeecC-CCeeeEEEEECCC-CCCHHHHHHHHHHHCCE-EEeCChhhCcCCCCeEEEEecC------C
Confidence            88899999876 776554 3444 45566653 222456666554 5664 44433 22  235799998742      2


Q ss_pred             HHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQS  348 (367)
Q Consensus       337 id~li~~l~~~~  348 (367)
                      .+++.++|+++.
T Consensus       376 ~~~l~~~l~~l~  387 (394)
T PRK05942        376 CDRLGEALDRLK  387 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555553

>PLN02452 phosphoserine transaminase

Probab=99.65  E-value=1.5e-14  Score=137.53  Aligned_cols=249  Identities=12%  Similarity=0.014  Sum_probs=161.2

Q ss_pred             Ccchh--HHHHHHhCCcceEEEecCCCC---CcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc-cCChhhHHHHHhh
Q psy3048          38 QSNSS--VEKSAIIGDVPVRQLRSDDNG---VLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA-FDNLEELGPICQE  111 (367)
Q Consensus        38 ~~H~s--~~~~~~~~g~~v~~v~~~~~~---~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~-i~dl~~I~~l~~~  111 (367)
                      ++.++  +.+.++..|...+.....++.   ..++++++.    ..    .+..|.+++.+|.+|+ ++|++++.+    
T Consensus       103 ~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~v~~~hnETstGv~~~~~~~i~~----  170 (365)
T PLN02452        103 TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL----TP----DAKFVHICANETIHGVEFKDYPDVGN----  170 (365)
T ss_pred             CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC----CC----CCcEEEECCCCCCCcEecCcccccCC----
Confidence            55665  344445556544433222222   456666521    11    1358999999999999 599988864    


Q ss_pred             cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                        ++++||++++.+..+.+..++        ++..+++||+++ |+|+|+++++++. +++.....+.|+.-...     
T Consensus       171 --~~lvVDa~Ss~g~~pidv~~~--------~v~~~saqK~lG-P~Gl~~v~vr~~~-l~~~~~~~~~~~~~~~~-----  233 (365)
T PLN02452        171 --VPLVADMSSNFLSKPVDVSKY--------GVIYAGAQKNVG-PSGVTIVIIRKDL-IGNARPITPGMLDYKIH-----  233 (365)
T ss_pred             --CeEEEECCccccCcccCHHHc--------CEEEEecccccC-CCCeEEEEEcHHH-HhhcccCCCchhhHHHH-----
Confidence              899999999888776653322        444469999985 9999999997543 33321111222211000     


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCcccccccc-ccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHh
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTP-LSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L  269 (367)
                                .                     .....- ..+-+..+.+..+++.+..+ |++++.++++++++++++.|
T Consensus       234 ----------~---------------------~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l  282 (365)
T PLN02452        234 ----------A---------------------ENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI  282 (365)
T ss_pred             ----------H---------------------hcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence                      0                     000000 11123346777888888776 89999999999999999999


Q ss_pred             cCCCCeEEe-CCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         270 EKDDRFELV-CPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       270 ~~~~g~~~~-~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      ++.+||... .++   ...+++|++++. ...+++.+.+.++|.+.+.+...-+  .+|++. ....+.++++.|++.++
T Consensus       283 ~~~~G~y~~~~~~~~rs~~~vsF~~~~~-~~~~~f~~~~~~~g~~~~~G~r~~g--g~R~s~-yna~~~~~v~~L~~~m~  358 (365)
T PLN02452        283 DESNGFYVCPVEKSVRSLMNVPFTLGGS-ELEAEFVKEAAKAGMVQLKGHRSVG--GMRASI-YNAMPLAGVEKLVAFMK  358 (365)
T ss_pred             HhCCCcccCCCChHHhCCeEEEEEcCCc-hhHHHHHHHHHHCCCcccCCccccC--ceEEEC-cCCCCHHHHHHHHHHHH
Confidence            998887222 121   335788998764 4677899999999965433221122  399965 56778999999999999


Q ss_pred             HHHHH
Q psy3048         346 HQSSE  350 (367)
Q Consensus       346 ~~~~~  350 (367)
                      ++.++
T Consensus       359 ~f~~~  363 (365)
T PLN02452        359 DFQAK  363 (365)
T ss_pred             HHHHh
Confidence            98654

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.65  E-value=1.2e-14  Score=139.76  Aligned_cols=244  Identities=18%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             eEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|+++...|.+....++   ..|+++++++.      |+++|++++++ .+      .+|++.+++|++|.+.|+++|+
T Consensus        93 D~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~------d~~~l~~~i~~~~t------klV~ie~p~NPtG~v~dl~~I~  160 (385)
T PRK08574         93 DRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP------STEDIIEAIKEGRT------KLVFIETMTNPTLKVIDVPEVA  160 (385)
T ss_pred             CEEEEcCCCchhHHHHHHHhhccCcEEEEECC------CHHHHHHhcCccCc------eEEEEECCCCCCCEecCHHHHH
Confidence            356677889988776653   35777776642      68899999876 44      4777899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|+++++|++|+.+....+ ..   .   .+|+++.+.+|++++|.+  .|++++.+++..++.... ..+.  +
T Consensus       161 ~la~~~gi~livD~t~a~~~~~~~-l~---~---GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~-~~~~--g  230 (385)
T PRK08574        161 KAAKELGAILVVDNTFATPLLYRP-LR---H---GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEW-RRRL--G  230 (385)
T ss_pred             HHHHHcCCEEEEECCCCccccCCh-hh---h---CCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHH-HHhc--C
Confidence            999999999999999976543221 11   2   359999999999998754  354666555433322100 0000  0


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                     .....+..+  +...+.+-+..++++..+++.+
T Consensus       231 -----------------------------------------------~~~~p~~a~--l~l~~l~tL~~R~~~~~~na~~  261 (385)
T PRK08574        231 -----------------------------------------------TIMQPFEAY--LVLRGLKTLEVRFERQCRNAMA  261 (385)
T ss_pred             -----------------------------------------------CCCCHHHHH--HHHcccCcHHHHHHHHHHHHHH
Confidence                                                           001112223  3333455677888999999999


Q ss_pred             HHHHhcCCCCeE-EeCCC------------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe-
Q psy3048         265 FADLVEKDDRFE-LVCPP------------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA-  315 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~~------------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~-  315 (367)
                      +.+.|+++|.+. +..|.                  ..++++|.+++..+...++.+.|.--.         .....|. 
T Consensus       262 la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~~~  341 (385)
T PRK08574        262 IAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYPVK  341 (385)
T ss_pred             HHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCCCc
Confidence            999999998875 44431                  134889998653333456666553211         0011110 


Q ss_pred             -EE----------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         316 -SF----------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       316 -~~----------~~--~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                       .+          .|  .+.+|+|+.     -||++.+++.|++.+++
T Consensus       342 ~~~~~~~~~~~~~~gi~~~liR~svG-----lE~~~dli~dl~~al~~  384 (385)
T PRK08574        342 SAASPIPEEDRKALGITEDLVRLSVG-----LEDVEDLIEDLDQALGS  384 (385)
T ss_pred             CCcccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhc
Confidence             00          01  458999874     36789999999888754

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.65  E-value=2.3e-14  Score=138.76  Aligned_cols=260  Identities=12%  Similarity=-0.007  Sum_probs=159.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      -.|++++.++..+...++..|++++.++.+++ +.+|+++|++++++.+      .+|++++++|++|.+.|   +++|+
T Consensus       121 d~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~NPtG~~~~~~~~~~l~  194 (394)
T PRK06836        121 DEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKT------KAVIINSPNNPTGVVYSEETLKALA  194 (394)
T ss_pred             CEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCc------eEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            45667788888888888889999999998755 7899999999997654      47788899999999865   67777


Q ss_pred             HHHhh------cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcc
Q psy3048         107 PICQE------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       107 ~l~~~------~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      ++|++      ||+++++|++|....+............ .-.++..+..|.++.| .++|+++..+.. . ........
T Consensus       195 ~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~pGlRiG~~~~~~~~-~-~~~~~~~~  271 (394)
T PRK06836        195 ALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYY-DNSIVVYSFSKSLSLPGERIGYIAVNPEM-E-DADDLVAA  271 (394)
T ss_pred             HHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHcc-CcEEEEecchhhccCcceeeEEEecCHHH-h-hhHHHHHH
Confidence            77888      8999999999976543211111101111 1257778899999744 578888874321 1 00000000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                       +.....     ...+                              +   .   ...+...+..+.+ .++.  ..++..
T Consensus       272 -~~~~~~-----~~~~------------------------------~---~---~~~~~q~~~~~~l-~~~~--~~~~~~  306 (394)
T PRK06836        272 -LVFANR-----ILGF------------------------------V---N---APALMQRVVAKCL-DATV--DVSIYK  306 (394)
T ss_pred             -HHHHhh-----cccc------------------------------c---c---CCHHHHHHHHHHh-CChH--HHHHHH
Confidence             000000     0000                              0   0   0011111111222 1221  123455


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      +..+.+.+.|+++ |+++..+.....++.+++.  ....++.+.|.+.|+.......+...+++|++++   .++++++.
T Consensus       307 ~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~--~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~~  380 (394)
T PRK06836        307 RNRDLLYDGLTEL-GFECVKPQGAFYLFPKSPE--EDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC---VDTETIER  380 (394)
T ss_pred             HHHHHHHHHHHhC-CCEeecCCceEEEEEeCCC--CCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec---CCHHHHHH
Confidence            6677788888887 7776654433344444543  2356777888878754333333333569999774   36899999


Q ss_pred             HHHHHHHHHHH
Q psy3048         340 AWNEISHQSSE  350 (367)
Q Consensus       340 li~~l~~~~~~  350 (367)
                      .++.|++++++
T Consensus       381 ~i~~l~~~l~~  391 (394)
T PRK06836        381 SLPAFEKLAKE  391 (394)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>PRK07777 aminotransferase; Validated

Probab=99.65  E-value=2.5e-14  Score=138.13  Aligned_cols=256  Identities=13%  Similarity=0.016  Sum_probs=161.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .|++....|.....++...|.+++.++.++   ++.+|+++|++++++.+      .+|++++++|+||.+-   ++++|
T Consensus       111 ~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l  184 (387)
T PRK07777        111 EVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT------RALIVNSPHNPTGTVLTAAELAAI  184 (387)
T ss_pred             EEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc------EEEEEcCCCCCCCccCCHHHHHHH
Confidence            556667788888888888999999998864   36799999999886544      4777889999999984   58899


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +++|++||+++++|++|+...+.......  ...+....+++..+.+|.++.| ..+|+++... ..+.... ....+..
T Consensus       185 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~-~l~~~~~-~~~~~~~  262 (387)
T PRK07777        185 AELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPA-PLIAAVR-AAKQYLT  262 (387)
T ss_pred             HHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCH-HHHHHHH-HHHhhcc
Confidence            99999999999999999765442211101  1112223478889999999744 4578777643 2222111 0001100


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                           .   .......+..++.. +...+++..++..+..
T Consensus       263 ~~-------------------------------------------~---~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~  295 (387)
T PRK07777        263 YV-------------------------------------------G---GAPFQPAVAHALDH-EDAWVAALRDSLQAKR  295 (387)
T ss_pred             cC-------------------------------------------C---CCHHHHHHHHHHhC-CcHHHHHHHHHHHHHH
Confidence            00                                           0   00001111122221 2345566677788889


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHhc-cCcEEEEEeE-E-----CCeeEEEEEecCCCCCH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLMS-HKQIYIIKAS-F-----QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~~-~g~~~~~~~~-~-----~~~~~lRi~~~~~~~~~  334 (367)
                      +++.+.|+++ |+++..+.....+++++++. ...+.++.+.|.+ .| +.+.++. +     .+..++|+++..   .+
T Consensus       296 ~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~g-v~v~pg~~f~~~~~~~~~~~Ri~~~~---~~  370 (387)
T PRK07777        296 DRLAAGLAEA-GFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVG-VAAIPMSVFYDPADAWNHLVRFAFCK---RD  370 (387)
T ss_pred             HHHHHHHHhC-CCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCC-EEEeCchHhCCCCcCCCCeEEEEecC---CH
Confidence            9999999886 77765444434444555321 1235788888875 56 4454432 2     124589998743   58


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQ  347 (367)
Q Consensus       335 edid~li~~l~~~  347 (367)
                      ++++..++.|.++
T Consensus       371 ~~l~~~l~~l~~~  383 (387)
T PRK07777        371 DTLDEAIRRLRAL  383 (387)
T ss_pred             HHHHHHHHHHHHH
Confidence            8899988888765

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.65  E-value=2.3e-14  Score=135.41  Aligned_cols=235  Identities=14%  Similarity=0.023  Sum_probs=153.0

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~l  108 (367)
                      .|++++.+|.++...++..|++++.++       |+++|+++++ .+      .++++++++|++|.+-|   +++|+++
T Consensus        88 ~vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~~~l~~~~~-~~------~~v~i~~p~NPtG~~~~~~~~~~l~~~  153 (330)
T TIGR01140        88 RVLVLAPTYSEYARAWRAAGHEVVELP-------DLDRLPAALE-EL------DVLVLCNPNNPTGRLIPPETLLALAAR  153 (330)
T ss_pred             eEEEeCCCcHHHHHHHHHcCCEEEEeC-------CHHHHHhhcc-cC------CEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            466778889999888888999998886       8899998883 23      37788999999999977   6777888


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      |+++|+++++|++|+.+.... ....... ...-++++.+.+|+++.| .++|+++..+ +.+........         
T Consensus       154 a~~~~~~ii~De~y~~~~~~~-~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~~-~~~~~l~~~~~---------  221 (330)
T TIGR01140       154 LRARGGWLVVDEAFIDFTPDA-SLAPQAA-RFPGLVVLRSLTKFFGLAGLRLGFVVAHP-ALLARLREALG---------  221 (330)
T ss_pred             hHhcCCEEEEECcccccCCcc-chhhHhc-cCCCEEEEEecchhhcCchhhhhheeCCH-HHHHHHHhcCC---------
Confidence            999999999999997554321 1111111 112368888999998844 5678888753 33332211000         


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~  266 (367)
                            .+                               .      ...+.+.++.+.+...+ .+...++..++.+++.
T Consensus       222 ------~~-------------------------------~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~  258 (330)
T TIGR01140       222 ------PW-------------------------------T------VNGPARAAGRAALADTAWQAATRARLAAERARLA  258 (330)
T ss_pred             ------CC-------------------------------C------chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence                  00                               0      01122333333333333 4566778889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-C--CeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-Q--GRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~--~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      +.|++++.+++. ++....+++.++.    ..++.++|.++|+ ++.++.. .  +.+++|++++.   ..++ ++|+++
T Consensus       259 ~~L~~~~~~~~~-~~~~~f~~~~~~~----~~~l~~~l~~~gi-~v~pg~~f~~~~~~~iRi~~~~---~~~~-~~~~~~  328 (330)
T TIGR01140       259 ALLARLGGLEVV-GGTALFLLVRTPD----AAALHEALARRGI-LIRDFDNFPGLDPRYLRFALPT---DEEN-DRLEEA  328 (330)
T ss_pred             HHHHhCCCceEC-CCCCeEEEEEcCC----HHHHHHHHHHCCE-EEEECCCCCCCCCCEEEEEecC---HHHH-HHHHHh
Confidence            999998666653 3444444555432    4689999998875 4544432 2  34699997643   3455 888887


Q ss_pred             HH
Q psy3048         344 IS  345 (367)
Q Consensus       344 l~  345 (367)
                      |+
T Consensus       329 l~  330 (330)
T TIGR01140       329 LA  330 (330)
T ss_pred             hC
Confidence            63

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.65  E-value=3.4e-14  Score=137.06  Aligned_cols=258  Identities=12%  Similarity=0.059  Sum_probs=160.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.++..+...+...|++++.++.+  +++.+|+++|++++++.+      .+|+++.++|+||.+-   .+++
T Consensus       113 gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~s~~~~~~  186 (384)
T PRK06348        113 GDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKT------KAIILNSPNNPTGAVFSKETLEE  186 (384)
T ss_pred             CCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCc------cEEEEeCCCCCCCcCCCHHHHHH
Confidence            3467778889999999999999999988863  457799999999886544      3667788999999985   5788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||+++++|++|+...+...... ..+.+...-.++..+..|.++ ....+|+++..+ ..... +.....+. 
T Consensus       187 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~-~~~~~-~~~~~~~~-  263 (384)
T PRK06348        187 IAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPD-YIIET-AKIINEGI-  263 (384)
T ss_pred             HHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCH-HHHHH-HHHHHHhc-
Confidence            99999999999999999986544221100 001111112466678899987 457788888743 22221 10000000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                 .                               ++   ...+....+..++.. ..+.+++..+...+..
T Consensus       264 -----------~-------------------------------~~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~  297 (384)
T PRK06348        264 -----------C-------------------------------FS---APTISQRAAIYALKH-RDTIVPLIKEEFQKRL  297 (384)
T ss_pred             -----------c-------------------------------CC---CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHH
Confidence                       0                               00   000111122222221 2233555666677778


Q ss_pred             HHHHHHhcCCCCeEEeCCCCce-eEEEEEcCCchHHHHHHHHHhc-cCcEEEEEe-EE--CCeeEEEEEecCCCCCHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMG-LVCFRLKGDNDLTNQLYERLMS-HKQIYIIKA-SF--QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~-~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~-~~--~~~~~lRi~~~~~~~~~edi  337 (367)
                      +++.+.|++++++++.. |+.+ .++++++.......++.+.+.+ .|+ .+.++ .+  .+..++|++++   .+.+++
T Consensus       298 ~~~~~~L~~~~~~~~~~-p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv-~v~pg~~f~~~~~~~iRi~~~---~~~~~l  372 (384)
T PRK06348        298 EYAYKRIESIPNLSLHP-PKGSIYAFINIKKTGLSSVEFCEKLLKEAHV-LVIPGKAFGESGEGYIRLACT---VGIEVL  372 (384)
T ss_pred             HHHHHHHhcCCCceecc-CCeeEEEEEecccCCCCHHHHHHHHHHhCCE-EEcCchhhccCCCCeEEEEec---CCHHHH
Confidence            88899998887776554 4434 3455554212235678887764 564 44433 22  23569999763   368888


Q ss_pred             HHHHHHHHHH
Q psy3048         338 AFAWNEISHQ  347 (367)
Q Consensus       338 d~li~~l~~~  347 (367)
                      +..++.|+++
T Consensus       373 ~~al~~l~~~  382 (384)
T PRK06348        373 EEAFNRIEKM  382 (384)
T ss_pred             HHHHHHHHhh
Confidence            8888888654

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.64  E-value=6.7e-15  Score=140.42  Aligned_cols=215  Identities=13%  Similarity=0.175  Sum_probs=146.1

Q ss_pred             CcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          64 VLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        64 ~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      ..|+++++++++++++      +|++.+++|++|.+.|+++|+++||++|+++++|++++...... ..     + ..+|
T Consensus       123 ~~d~~~l~~~i~~~Tk------lV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~-pl-----~-~gaD  189 (364)
T PRK07269        123 ANTEEELIAAIEEDTD------IVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR-PI-----E-LGAD  189 (364)
T ss_pred             cCCHHHHHHhcCcCce------EEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC-ch-----h-hCCc
Confidence            3589999999987664      89999999999999999999999999999999999986554321 11     1 1469


Q ss_pred             eeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         144 SFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       144 ~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      +.++|.+|+++++.+  .|+++.++++..++... ...++                                        
T Consensus       190 ivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~-~~~~~----------------------------------------  228 (364)
T PRK07269        190 IVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY-NLNTT----------------------------------------  228 (364)
T ss_pred             EEEecCceeccCCCcccceEEEeCcHHHHHHHHH-HHHHh----------------------------------------
Confidence            999999999998765  56666655543332210 00000                                        


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCe-EEeCCCCceeEEEEEcCCchHHHHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRF-ELVCPPSMGLVCFRLKGDNDLTNQL  300 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~-~~~~~~~~~~v~f~~~~~~~~~~~l  300 (367)
                               +.....+..|  +...+.+.+..+++++.+++.++.+.|+++|++ +++.|+..++++|.+.+ .....++
T Consensus       229 ---------G~~~s~~~a~--l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~-~~~~~~f  296 (364)
T PRK07269        229 ---------GAVLSPFDSY--LLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD-ETRIPHI  296 (364)
T ss_pred             ---------CCCCCHHHHH--HHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC-HHHHHHH
Confidence                     0001123333  344456678999999999999999999999986 45667788899999864 3333455


Q ss_pred             HHHHhccC---------cEEEEEe--EE----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         301 YERLMSHK---------QIYIIKA--SF----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       301 ~~~L~~~g---------~~~~~~~--~~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      .+.|....         .+.+.|.  .+          .  .++.+|+|+.     -||++.+++.|++.++
T Consensus       297 ~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG-----lE~~~dli~dl~~al~  363 (364)
T PRK07269        297 LNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG-----IEDARDLIADLKQALE  363 (364)
T ss_pred             HHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHhc
Confidence            55543211         1122221  10          0  1468999874     3688899999888753

>PRK08068 transaminase; Reviewed

Probab=99.64  E-value=3.2e-14  Score=137.47  Aligned_cols=257  Identities=12%  Similarity=0.031  Sum_probs=158.3

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh---h
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL---E  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl---~  103 (367)
                      +.-.|++.+.++......++..|++++.++.++  ++.+|++++++++.+.+      .+|+++.|+|+||.+-+.   +
T Consensus       117 ~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~------~~v~l~~P~NPTG~~~s~~~~~  190 (389)
T PRK08068        117 PGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKA------KLMYLNYPNNPTGAVATKAFFE  190 (389)
T ss_pred             CCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccccc------eEEEEECCCCCCCCcCCHHHHH
Confidence            345677788999999999999999999999863  57789999999886543      478888899999999655   6


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhC--CCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--GLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~--~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|+++|++||+++++|++|+...+..........  +...-.+++.+..|.++. ...+|+++. +++.+.........+
T Consensus       191 ~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~  269 (389)
T PRK08068        191 ETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVG-NESVIEAINLLQDHL  269 (389)
T ss_pred             HHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEec-CHHHHHHHHHHHhhc
Confidence            7888999999999999999654332111001011  111124677789999964 456888875 333332211110000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      . ..                                             ... ..+..+..++.. +.+.+++..++..+
T Consensus       270 ~-~~---------------------------------------------~~~-~~q~~~~~~l~~-~~~~~~~~~~~~~~  301 (389)
T PRK08068        270 F-VS---------------------------------------------LFG-AIQDAAIEALLS-DQSCVAELVARYES  301 (389)
T ss_pred             c-CC---------------------------------------------CCh-HHHHHHHHHHhC-cHHHHHHHHHHHHH
Confidence            0 00                                             000 001111122211 23456677777888


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCCCCCHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~~~~~ed  336 (367)
                      ..+++.+.|+++ |+.+..+.....+++.+++ ...+.++.+.|.++ |+ .+.++..   .+..++|+++..   .++.
T Consensus       302 ~r~~~~~~L~~~-g~~~~~~~g~~~~~v~~~~-~~~~~~~~~~l~~~~gi-~v~pg~~f~~~~~~~iRi~~~~---~~~~  375 (389)
T PRK08068        302 RRNAFISACREI-GWEVDAPKGSFFAWMPVPK-GYTSEQFADLLLEKAHV-AVAPGNGFGEHGEGYVRVGLLT---DEER  375 (389)
T ss_pred             HHHHHHHHHHHC-CCcccCCCeeEEEEEECCC-CCCHHHHHHHHHHhCCE-EEecchHhCccCCCeEEEEEcC---CHHH
Confidence            888899999887 7765433332335666653 22356888888864 64 4544322   235699998742   4555


Q ss_pred             HHHHHHHHHH
Q psy3048         337 VAFAWNEISH  346 (367)
Q Consensus       337 id~li~~l~~  346 (367)
                      +...++.|++
T Consensus       376 l~~al~~l~~  385 (389)
T PRK08068        376 LREAVERIGK  385 (389)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.64  E-value=3.2e-14  Score=137.68  Aligned_cols=246  Identities=16%  Similarity=0.170  Sum_probs=156.1

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|...    ...+...|++++.++.+     |+++|++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus       106 ~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~t------klV~le~p~NPtG~~~di~~I~~  174 (403)
T PRK07503        106 EVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDKT------RMVYFETPANPNMRLVDIAAVAE  174 (403)
T ss_pred             EEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCccC------cEEEEeCCCCCCCeeeCHHHHHH
Confidence            455566666442    33455689999988764     7999999997765      37778899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|+++|+++++|++|+.+.... ...   .   .+|+++.|.+|+++++.+  .|+++ .+++...+.....   . ...
T Consensus       175 la~~~gi~lIvD~a~a~~~~~~-~l~---~---g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~~~l~~~~---~-~~~  242 (403)
T PRK07503        175 IAHGAGAKVVVDNTYCTPYLQR-PLE---L---GADLVVHSATKYLGGHGDITAGLVV-GGKALADRIRLEG---L-KDM  242 (403)
T ss_pred             HHHHcCCEEEEECCCcccccCC-chh---h---CCCEEEccccccccCCCceeEEEEE-cCHHHHHHHHhhh---H-HhC
Confidence            9999999999999997653321 111   1   359999999999997644  56655 4544433221000   0 000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .                                            +.....+..+.  ...+.+-+..+++++.+++..+
T Consensus       243 ~--------------------------------------------g~~~s~~~a~l--~l~~L~tl~~r~~~~~~na~~~  276 (403)
T PRK07503        243 T--------------------------------------------GAVMSPFDAFL--LMRGLKTLALRMDRHCASAQAV  276 (403)
T ss_pred             c--------------------------------------------CCCCCHHHHHH--HHcCcchHHHHHHHHHHHHHHH
Confidence            0                                            00011233333  3335567778888899999999


Q ss_pred             HHHhcCCCCeEEe-CC-----C-----------CceeEEEEEcCCchHHHHHHHHHhc--cCc-------EEEEE-----
Q psy3048         266 ADLVEKDDRFELV-CP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMS--HKQ-------IYIIK-----  314 (367)
Q Consensus       266 ~~~L~~~~g~~~~-~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~--~g~-------~~~~~-----  314 (367)
                      .+.|+++|.+..+ .|     |           ..++++|.+.+.......+.+.|.-  .+.       +...+     
T Consensus       277 a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~~h  356 (403)
T PRK07503        277 AEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTH  356 (403)
T ss_pred             HHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCCcc
Confidence            9999999887633 32     1           1358888886532333455554432  110       00001     


Q ss_pred             eEE-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         315 ASF-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       315 ~~~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...       .  ..+.+|+|+.     -||++.+++.|++.++.+
T Consensus       357 ~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~Al~~~  397 (403)
T PRK07503        357 STYTPEERAEHGISEGLVRLSVG-----LEDVADILADLAQALDAC  397 (403)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEEe-----cCCHHHHHHHHHHHHHHH
Confidence            000       0  1458999874     367888888888887654

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=2.7e-14  Score=136.43  Aligned_cols=247  Identities=12%  Similarity=0.063  Sum_probs=161.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.++..+...+...|++++.++.+ ++.+|++++++++++.+      .++++++++|+||.+-|.++|.+++
T Consensus       105 gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~~------~~v~i~~p~NPtG~~~~~~~l~~~~  177 (359)
T PRK03158        105 GTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQT------KIVWICNPNNPTGTYVNHEELLSFL  177 (359)
T ss_pred             CCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCCC------CEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            3457777788888888888899999999986 67899999998886544      3777899999999999999999988


Q ss_pred             hh--cCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         110 QE--YNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       110 ~~--~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +.  +|+++++|++|..+.+...  ..-...... .-.++..+..|.++.| ..+|+++... +.+.........     
T Consensus       178 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlRiG~~v~~~-~~~~~~~~~~~~-----  250 (359)
T PRK03158        178 ESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALRVGYGIASE-ELIEKLNIARPP-----  250 (359)
T ss_pred             HhCCCCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchhhehhcCCH-HHHHHHHHhcCC-----
Confidence            87  6999999999976543211  000001111 1256667889998743 5568887643 333221110000     


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~  263 (367)
                                +                               .      ...+...++...+. .+..++..++..+..+
T Consensus       251 ----------~-------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  283 (359)
T PRK03158        251 ----------F-------------------------------N------TTRIAQYAAIAALEDQAFLKECVEKNAEGLE  283 (359)
T ss_pred             ----------C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                      0                               0      01122233333332 2334555556667778


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++.+.|++. |+.+. ++..+.+++.+..   ...++.+.|.++|+. +.++ .+..++++|+++.    +.+|++++++
T Consensus       284 ~~~~~l~~~-~~~~~-~~~g~~i~~~~~~---~~~~~~~~l~~~gv~-v~~g~~f~~~~~iRi~~~----~~~~~~~l~~  353 (359)
T PRK03158        284 QYYAFCKEY-GLFYY-PSQTNFIFVDTGR---DANELFEALLKKGYI-VRSGAALGFPTGVRITIG----LKEQNDKIIE  353 (359)
T ss_pred             HHHHHHHHC-CCeeC-CCcCcEEEEECCC---CHHHHHHHHHHCCeE-EeeCCCCCCCCeEEEecC----CHHHHHHHHH
Confidence            888888877 77664 4444555555531   256888888888854 4443 2333579999764    6899999999


Q ss_pred             HHHHH
Q psy3048         343 EISHQ  347 (367)
Q Consensus       343 ~l~~~  347 (367)
                      +|+++
T Consensus       354 al~~~  358 (359)
T PRK03158        354 LLKEL  358 (359)
T ss_pred             HHHHh
Confidence            99886

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.64  E-value=3.4e-14  Score=137.05  Aligned_cols=256  Identities=13%  Similarity=0.027  Sum_probs=157.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++.+.++..+...++..|++++.++.++  ++.+|++++++++.+.+      .+|++++++|+||.+-+   +++
T Consensus       117 gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~  190 (385)
T PRK09276        117 GDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKA------KLMFINYPNNPTGAVADLEFFEE  190 (385)
T ss_pred             CCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccccc------eEEEEeCCCCCCCCCCCHHHHHH
Confidence            34566778888888888889999999999853  46789999998876544      47888899999999966   588


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+.......  .+.+...-.+...+..|.++.| ..+|+++.. ++.+...... ...+
T Consensus       191 l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~-~~l~~~~~~~-~~~~  268 (385)
T PRK09276        191 VVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGN-ADLIAGLGKV-KSNV  268 (385)
T ss_pred             HHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCC-HHHHHHHHHH-Hhhc
Confidence            899999999999999999765432111000  0111111246677888988633 458888753 3333221100 0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ...                                              ...+....+..++.. ....+++..++..+.
T Consensus       269 ~~~----------------------------------------------~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~  301 (385)
T PRK09276        269 DSG----------------------------------------------VFQAIQEAGIAALNG-PQEVVEELRKIYQER  301 (385)
T ss_pred             cCC----------------------------------------------CCHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence            000                                              000011122222221 234456667777888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-EC--CeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-FQ--GRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~edi  337 (367)
                      .+++.+.|+++ |+++..+.....+++++++ .....++.+.|.+ .|+ .+.++. +.  +..++|+++..   +++++
T Consensus       302 ~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~~-~~~~~~l~~~ll~~~gi-~v~~g~~f~~~~~~~~Ris~~~---~~~~l  375 (385)
T PRK09276        302 RDILVEGLRKL-GLEVEPPKATFYVWAPVPK-GYTSAEFATLLLDKAGV-VVTPGNGFGEYGEGYFRIALTV---PDERI  375 (385)
T ss_pred             HHHHHHHHHhC-CCcccCCCcceEEEEECCC-CCCHHHHHHHHHHhCCE-EECCchhhCCCCCCeEEEEeCC---CHHHH
Confidence            89999999887 7776544333335666643 2235678888765 564 444432 22  24699998742   56777


Q ss_pred             HHHHHHHHH
Q psy3048         338 AFAWNEISH  346 (367)
Q Consensus       338 d~li~~l~~  346 (367)
                      ...++.|.+
T Consensus       376 ~~~l~~l~~  384 (385)
T PRK09276        376 EEAVERIKK  384 (385)
T ss_pred             HHHHHHHhh
Confidence            776666643

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.64  E-value=2.2e-14  Score=139.72  Aligned_cols=277  Identities=13%  Similarity=0.103  Sum_probs=163.0

Q ss_pred             eEEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|+++...|.+...    .+...|++++.++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|.
T Consensus       103 d~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~t------klV~vesp~NptG~v~dl~~I~  171 (427)
T PRK05994        103 DEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPRT------KAIFIESIANPGGTVTDIAAIA  171 (427)
T ss_pred             CEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcCC------eEEEEECCCCCCCeecCHHHHH
Confidence            345666777776443    345679999988754     8999999997755      4888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecch-hhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNAN-HLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~-~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|+++++|++|+.+.... ...   .   .+|+++.++|||++++.+ .|.+++.... .+..  .....++...
T Consensus       172 ~la~~~gi~livD~a~a~~~~~~-pl~---~---gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~--~k~~~~~~~~  242 (427)
T PRK05994        172 EVAHRAGLPLIVDNTLASPYLIR-PIE---H---GADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSK--SGKYPMLSEP  242 (427)
T ss_pred             HHHHHcCCEEEEECCccccccCC-ccc---c---CCcEEEEcCccccCCCCCcEEEEEEeCCcccccc--ccccccccCC
Confidence            99999999999999998654321 111   1   459999999999997754 5555553221 0100  0000111110


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..   ... ...+.+..+   ..+..... .        ..+....+.....+..|  +...+.+-+..+++++.+++.+
T Consensus       243 ~~---~~~-~~~~~~~~~---~~~~~~~~-~--------~~~~~~~G~~~~~~~A~--l~~~~l~tL~~r~~~~~~~a~~  304 (427)
T PRK05994        243 RP---EYH-GLVLHETFG---NFAFAIAA-R--------VLGLRDLGPAISPFNAF--LILTGIETLPLRMQRHSDNALA  304 (427)
T ss_pred             cc---hhh-hhhHHHHhh---hhhhHHHH-H--------HHHHHhcCCCCCHHHHH--HHHcCcccHHHHHHHHHHHHHH
Confidence            00   000 000000000   00000000 0        00000111112233333  4445677889999999999999


Q ss_pred             HHHHhcCCCCeE-EeCCC-----------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--
Q psy3048         265 FADLVEKDDRFE-LVCPP-----------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--  315 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~~-----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--  315 (367)
                      +.+.|+++|++. +..|.                 ..++++|.+.+..+...++++.|.--.         .....|.  
T Consensus       305 la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~  384 (427)
T PRK05994        305 VAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPAST  384 (427)
T ss_pred             HHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCC
Confidence            999999999875 44331                 135889998753333446666553211         0111110  


Q ss_pred             EE----------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         316 SF----------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       316 ~~----------~~--~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .+          .|  .+.+|+|+.     -||.+.+++.|++.+++
T Consensus       385 ~h~~~~~~~~~~~gi~~~liRlsvG-----lE~~~dli~dl~~Al~~  426 (427)
T PRK05994        385 THRQLTDEQKVAAGAGPDVVRLSIG-----IEDVDDIIADLEQALAK  426 (427)
T ss_pred             CcccCCHHHHHhcCCCCCcEEEEec-----cCCHHHHHHHHHHHHhh
Confidence            00          11  458999774     36888899999888763

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.64  E-value=5.8e-14  Score=133.95  Aligned_cols=248  Identities=10%  Similarity=0.070  Sum_probs=160.4

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|++.+..+..+...++..|++++.++.+.  ++.+| +++++.+.+.+      .++++++++|+||.+-+   +++|+
T Consensus        95 ~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~------~~v~~~~P~NPtG~~~~~~~~~~l~  167 (354)
T PRK06358         95 KVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEI------DLVFLCNPNNPTGQLISKEEMKKIL  167 (354)
T ss_pred             cEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCC------CEEEEeCCCCCCCCccCHHHHHHHH
Confidence            456677888888888888999999999863  35788 66665554333      47778899999999864   88888


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++||+++++|++|.-+.+.......  ......+ -++..+..|.++ ....+|+++..++............    
T Consensus       168 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~----  242 (354)
T PRK06358        168 DKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKN-LIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREP----  242 (354)
T ss_pred             HHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCC-EEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC----
Confidence            8999999999999999754432211110  0111111 256678899997 6688999877443332221110000    


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~la  262 (367)
                                 +                               .      ...+...++...+.. +-+++..+...+..
T Consensus       243 -----------~-------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r  274 (354)
T PRK06358        243 -----------W-------------------------------S------INTFADLAGQTLLDDKEYIKKTIQWIKEEK  274 (354)
T ss_pred             -----------C-------------------------------c------chHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence                       0                               0      001222222222222 23466667777888


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +++.+.|++++|+.+.. +..+.++++++.    ..++.+.|.++|+.....+.+.  +..++|+++.    +.++.+++
T Consensus       275 ~~l~~~L~~~~~~~~~~-~~g~f~~~~~~~----~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~----~~~~~~~l  345 (354)
T PRK06358        275 DFLYNGLSEFKGIKVYK-PSVNFIFFKLEK----PIDLRKELLKKGILIRSCSNYRGLDENYYRVAVK----SREDNKKL  345 (354)
T ss_pred             HHHHHHHhcCCCcEEcC-CcceEEEEEcCc----hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHH
Confidence            88999998888876654 455666666653    3688888888885433333332  3468999764    58899999


Q ss_pred             HHHHHHHH
Q psy3048         341 WNEISHQS  348 (367)
Q Consensus       341 i~~l~~~~  348 (367)
                      +++|+++.
T Consensus       346 ~~~l~~~~  353 (354)
T PRK06358        346 LKALEVIL  353 (354)
T ss_pred             HHHHHHHh
Confidence            99998864

>PRK12414 putative aminotransferase; Provisional

Probab=99.64  E-value=1.7e-14  Score=139.07  Aligned_cols=254  Identities=9%  Similarity=0.049  Sum_probs=155.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~  106 (367)
                      -.|++++.+|......++..|++++.++.+ +++.+|+++|++++++.+      .+|++++++|+||.+   +++++|+
T Consensus       115 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~NPTG~~~s~~~~~~i~  188 (384)
T PRK12414        115 DEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPRT------RMIIVNTPHNPSATVFSAADLARLA  188 (384)
T ss_pred             CEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCccc------EEEEEcCCCCCCCcCCCHHHHHHHH
Confidence            456677888988888888899999999986 367899999999886544      477888999999997   5789999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++||+++++|++|+-..+........  ..+...-.+++.+..|.++ ....+|+++... +.+..... ...+.. 
T Consensus       189 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~-~l~~~l~~-~~~~~~-  265 (384)
T PRK12414        189 QLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPA-ELMDEIRK-VHQFMV-  265 (384)
T ss_pred             HHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCH-HHHHHHHH-HHhhee-
Confidence            99999999999999997644322111110  1111112477788999986 446688888743 22221100 000000 


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~la  262 (367)
                                 +                               .   .   ..+...++...+.. ..+.+..+...+.+
T Consensus       266 -----------~-------------------------------~---~---s~~~q~a~~~~l~~~~~~~~~~~~~~~~r  297 (384)
T PRK12414        266 -----------F-------------------------------S---A---DTPMQHAFAEALAEPASYLGLGAFYQRKR  297 (384)
T ss_pred             -----------c-------------------------------C---C---CcHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                       0                               0   0   00122222222211 22334555667788


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeE-EEEEcCC-chHHHHHH-HHHhccCcEEEEEeEEC--C--eeEEEEEecCCCCCHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLV-CFRLKGD-NDLTNQLY-ERLMSHKQIYIIKASFQ--G--RPFLRFVVTSPETNQC  335 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v-~f~~~~~-~~~~~~l~-~~L~~~g~~~~~~~~~~--~--~~~lRi~~~~~~~~~e  335 (367)
                      +++.+.|+++ |+.+.. +..+.+ ++++++. .....++. +.+.+.|+....+..+.  +  .+++|++++.   +++
T Consensus       298 ~~l~~~L~~~-g~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~---~~~  372 (384)
T PRK12414        298 DLLARELAGS-RFELLP-SEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK---DDA  372 (384)
T ss_pred             HHHHHHHHhC-CCeecC-CCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC---CHH
Confidence            8888999887 777654 333433 3355321 11234555 44556675443333221  2  4699998753   578


Q ss_pred             HHHHHHHHHHH
Q psy3048         336 DVAFAWNEISH  346 (367)
Q Consensus       336 did~li~~l~~  346 (367)
                      +++..++.|.+
T Consensus       373 ~~~~~~~rl~~  383 (384)
T PRK12414        373 TLVEGARRLCS  383 (384)
T ss_pred             HHHHHHHHHhh
Confidence            88888877754

>PLN02242 methionine gamma-lyase

Probab=99.64  E-value=3e-14  Score=138.22  Aligned_cols=244  Identities=16%  Similarity=0.165  Sum_probs=156.9

Q ss_pred             EEEecCCcchhHHHHH-----HhCCcceEEEecCCCCCcCHHHHHHHHHHH-hhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          32 VAYASDQSNSSVEKSA-----IIGDVPVRQLRSDDNGVLRGDALLTAVKED-LAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~-----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~-~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .|+++...+......+     +..|++++.++.+     |+++|++++++. +      .+|++++++|++|.+.|+++|
T Consensus       117 ~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~~t------klV~lesp~NPtG~v~dl~~I  185 (418)
T PLN02242        117 HVVASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPGKT------KVLYFESISNPTLTVADIPEL  185 (418)
T ss_pred             EEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcCCC------EEEEEecCCCCCCcccCHHHH
Confidence            4556666665554443     3468888777653     899999998763 4      488899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcc-ccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRV-YLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~-yl~  182 (367)
                      +++||+||+++++|++|+.+.+  +...   .+   +|+++.+.+|++.++..  .|+++. +++.+......... +..
T Consensus       186 ~~la~~~gi~livDea~~~~~~--~~~~---~g---~divv~S~SK~l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~  256 (418)
T PLN02242        186 ARIAHEKGVTVVVDNTFAPMVL--SPAR---LG---ADVVVHSISKFISGGADIIAGAVCG-PAELVNSMMDLHHGALML  256 (418)
T ss_pred             HHHHHHhCCEEEEECCCCccCC--CHHH---cC---CcEEEEeCccccCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhc
Confidence            9999999999999999964332  2111   12   59999999999987644  355553 44433322111000 000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      .                                               +..  ..+..+++...+...+..++++..+++
T Consensus       257 ~-----------------------------------------------g~~--~~~~~A~l~~~~l~tl~~r~~~~~~~a  287 (418)
T PLN02242        257 L-----------------------------------------------GPT--MNPKVAFELSERLPHLSLRMKEHCRRA  287 (418)
T ss_pred             c-----------------------------------------------CCC--CCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            0                                               000  112233333344556677888999999


Q ss_pred             HHHHHHhcCCCCeEEeCCC-------------------CceeEEEEEcCCchHHHHHHHHHhcc----Cc---------E
Q psy3048         263 KKFADLVEKDDRFELVCPP-------------------SMGLVCFRLKGDNDLTNQLYERLMSH----KQ---------I  310 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~-------------------~~~~v~f~~~~~~~~~~~l~~~L~~~----g~---------~  310 (367)
                      +++.+.|+++ ++++..|.                   ..++++|.+.+ ......++++|.--    ..         +
T Consensus       288 ~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~-~~~~~~f~~~l~~~~~~~~~~~slG~~~sl  365 (418)
T PLN02242        288 MEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT-EERANRLMRYLQNSTQFGFMAVSLGYYETL  365 (418)
T ss_pred             HHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC-HHHHHHHHHHhhcccccceeeecCCCCCce
Confidence            9999999998 57877541                   13688898864 34456777776522    10         0


Q ss_pred             EEEEe--E---E-------CC--eeEEEEEecCCCCCHH-HHHHHHHHHHHHHHHh
Q psy3048         311 YIIKA--S---F-------QG--RPFLRFVVTSPETNQC-DVAFAWNEISHQSSEM  351 (367)
Q Consensus       311 ~~~~~--~---~-------~~--~~~lRi~~~~~~~~~e-did~li~~l~~~~~~~  351 (367)
                      ...+.  .   .       .|  .+.+|+|+.     -| |+|.+++.|++.++++
T Consensus       366 ~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-----lE~~~~dli~dl~~al~~~  416 (418)
T PLN02242        366 MSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-----YTGTLEQRWSQFEKALSAM  416 (418)
T ss_pred             eeCCCccccccCCHHHHHhcCCCCCeEEEEec-----CCCCHHHHHHHHHHHHHHh
Confidence            00010  0   0       11  458999774     35 4899999999988765

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.64  E-value=4.7e-15  Score=138.02  Aligned_cols=263  Identities=16%  Similarity=0.108  Sum_probs=170.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC-hhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN-LEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d-l~~I~~  107 (367)
                      .|+.++..|+|..+++...|.+++.|+..   +.-..|++.+++++++..   ..+++.++++.+-..+...| +++|++
T Consensus       103 ~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G---~~~iLcvltttscfapr~~D~i~~Iak  179 (389)
T PF05889_consen  103 YVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEELG---ADNILCVLTTTSCFAPRLPDDIEEIAK  179 (389)
T ss_dssp             EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHHC---GGGEEEEEEESSTTTTB----HHHHHH
T ss_pred             eEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHhC---CCCeEEEEEecCccCCCCCccHHHHHH
Confidence            44557899999999999999999999862   346677899999986543   34678888888777787755 999999


Q ss_pred             HHhhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ||++||+++++.+|||.-.-.+ ...... ...+++|+++-+.-|.|.+|.|.+++...++..+...   ...|-+....
T Consensus       180 iC~~~~IPhlvNnAYgvQ~~~~~~~i~~a-~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~v---s~~YpGRas~  255 (389)
T PF05889_consen  180 ICKEYDIPHLVNNAYGVQSSKCMHLIQQA-WRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAV---SKEYPGRASA  255 (389)
T ss_dssp             HHHHHT--EEEEGTTTTT-HHHHHHHHHH-HHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHH---HHTSHSHBTS
T ss_pred             HHHHcCCceEEccchhhhHHHHHHHHHHH-HhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHH---HHHhhhhhhc
Confidence            9999999999999998632211 111111 1135679999999999999999999888776554322   1222221110


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                     ...+-+..-+..+|..|+...+....++..++.
T Consensus       256 -----------------------------------------------sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~  288 (389)
T PF05889_consen  256 -----------------------------------------------SPSLDLFITLLSLGCTGYGALLKERKASFPYLK  288 (389)
T ss_dssp             -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------ccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                                                           011233445667799999999999999999999


Q ss_pred             HHhcCCC---CeEEeCCCC-ceeEEEEEcCCc----hHHHHHHHHHhccCcEE---EEEeE--------ECCeeEEEEEe
Q psy3048         267 DLVEKDD---RFELVCPPS-MGLVCFRLKGDN----DLTNQLYERLMSHKQIY---IIKAS--------FQGRPFLRFVV  327 (367)
Q Consensus       267 ~~L~~~~---g~~~~~~~~-~~~v~f~~~~~~----~~~~~l~~~L~~~g~~~---~~~~~--------~~~~~~lRi~~  327 (367)
                      ++|++..   +-.++..|. .-.+.|.+....    .....+...|..+++.-   +.+..        .....++-++.
T Consensus       289 erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~As  368 (389)
T PF05889_consen  289 ERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAAS  368 (389)
T ss_dssp             HHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE
T ss_pred             HHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHH
Confidence            9987642   445555442 334455554321    12347778888877321   11110        01125787754


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q psy3048         328 TSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       328 ~~~~~~~edid~li~~l~~~~~  349 (367)
                       ....++||||.++++|++++|
T Consensus       369 -aiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  369 -AIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             --TT--HHHHHHHHHHHHHHHH
T ss_pred             -HhCCCHHHHHHHHHHHHHHhC
Confidence             678899999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.64  E-value=4.3e-14  Score=136.78  Aligned_cols=246  Identities=16%  Similarity=0.179  Sum_probs=160.2

Q ss_pred             EEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+..    ..++..|+++++++.+     |++++++++++.+      .+|++++++|++|.+.|+++|.+
T Consensus       105 ~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~t------klI~iesP~NPtG~v~dl~~I~~  173 (400)
T PRK06234        105 HVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKANT------KVVYLETPANPTLKVTDIKAISN  173 (400)
T ss_pred             EEEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccCC------eEEEEECCCCCCCCcCCHHHHHH
Confidence            4566667666543    3456689999999764     8999999998765      48888999999999999999999


Q ss_pred             HHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccccc
Q psy3048         108 ICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       108 l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +||++  |+++++|++|+.+.+..+ ..   .   .+|+++.+.+|++.++..  .|+++.++ +...........+.. 
T Consensus       174 la~~~~~~i~livDea~~~~~~~~~-l~---~---g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~~-  244 (400)
T PRK06234        174 IAHENNKECLVFVDNTFCTPYIQRP-LQ---L---GADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDMT-  244 (400)
T ss_pred             HHHhcCCCCEEEEECCCCchhcCCc-hh---h---CCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHhc-
Confidence            99997  999999999986644221 11   1   359999999999987643  46666543 333321100000000 


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                     +.....+..+..+  .+.+-+..++++..++++
T Consensus       245 -----------------------------------------------g~~l~p~~a~l~~--~~l~tl~~r~~~~~~na~  275 (400)
T PRK06234        245 -----------------------------------------------GSVIGPFEAFLII--RGMKTLQIRMEKHCKNAM  275 (400)
T ss_pred             -----------------------------------------------CCCCCHHHHHHHH--hccCcHHHHHHHHHHHHH
Confidence                                                           0001122333333  345556778888899999


Q ss_pred             HHHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEe--
Q psy3048         264 KFADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKA--  315 (367)
Q Consensus       264 ~l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~--  315 (367)
                      ++.+.|+++|.+. +..|     |           ..++++|.+.+..+...++.+.|..-+.         +...|.  
T Consensus       276 ~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~  355 (400)
T PRK06234        276 KVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASM  355 (400)
T ss_pred             HHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccC
Confidence            9999999988774 3333     1           2468899987533344567776653320         111111  


Q ss_pred             EE----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 SF----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 ~~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .+          .  .++.+|+|+.     -||.+.+++.|++.++.+
T Consensus       356 ~~~~~~~~~~~~~gi~~~l~R~svG-----lE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        356 THSPYTAEERKEAGISDGLVRLSVG-----LEDVDDIIADLKQALDLI  398 (400)
T ss_pred             CCCCCCHHHHHhcCCCCCeEEEEeC-----CCCHHHHHHHHHHHHHHH
Confidence            00          0  1468999774     367888898888887764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.63  E-value=7e-14  Score=138.58  Aligned_cols=268  Identities=14%  Similarity=0.092  Sum_probs=165.1

Q ss_pred             ceEEEecCCcchhHHHHHH-hCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~-~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      .-.|++++..+..+...+. ..|++++.|+++  +++.+|+++++++++...+.+..+.+|+++.++||||.+-+   ++
T Consensus       143 GD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~  222 (496)
T PLN02376        143 GDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLT  222 (496)
T ss_pred             CCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHH
Confidence            3457778889988888777 489999999985  46789999999887654333334567888999999999955   67


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhh---hhCC--CC--Ccc--eeeeccccccc-cCCcceeEEEecchhhhhh
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAH---LKRG--LE--YVD--SFAFNAHKWLL-TNHDCSAMWVKNANHLTNT  173 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~---~~~~--~~--~~D--~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~  173 (367)
                      +|+++|++||+++++|++|+...+..+.+..   ....  ..  ..+  .++.+..|.++ .+..+|+++..++.... .
T Consensus       223 ~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~-~  301 (496)
T PLN02376        223 NLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVS-C  301 (496)
T ss_pred             HHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHH-H
Confidence            7888999999999999999876543221111   1110  00  012  34678999996 44889998875443222 1


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-----H
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-----L  248 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~  248 (367)
                      ......+.  .                                                 ...+...++...+.     .
T Consensus       302 ~~~~~~~~--~-------------------------------------------------vs~~~Q~a~~~~L~d~~~~~  330 (496)
T PLN02376        302 ARKMSSFG--L-------------------------------------------------VSSQTQLMLASMLSDDQFVD  330 (496)
T ss_pred             HHHHhhcC--C-------------------------------------------------CCHHHHHHHHHHhCChhHHH
Confidence            10000000  0                                                 00111122222221     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC--c----hHHHHHHHHHhccCcEEEEEeE-E--CC
Q psy3048         249 KGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--N----DLTNQLYERLMSHKQIYIIKAS-F--QG  319 (367)
Q Consensus       249 ~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--~----~~~~~l~~~L~~~g~~~~~~~~-~--~~  319 (367)
                      +-+++..++..+..+.+.+.|++. |+.++.+.....++++++..  .    ....++.+.|.++..+.+.|+. +  .+
T Consensus       331 ~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~  409 (496)
T PLN02376        331 NFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTE  409 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCC
Confidence            223344555667777788888775 77765544445556666431  0    1124677777765334555543 3  23


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ++++|+++..  .++++++..++.|++++++..
T Consensus       410 ~g~~Ri~fa~--~~~~~l~~al~rl~~~l~~~~  440 (496)
T PLN02376        410 PGWFRICFAN--MDDDTLHVALGRIQDFVSKNK  440 (496)
T ss_pred             CCEEEEEeeC--CCHHHHHHHHHHHHHHHHHhh
Confidence            6799998753  357889999999998876433

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.63  E-value=5.1e-14  Score=136.89  Aligned_cols=271  Identities=9%  Similarity=-0.009  Sum_probs=164.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++.+.++..+...++..|++++.++.+  +++.+|+++|++++++.+      ..+++++++|+||.+-+   +++|
T Consensus       122 d~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~~~~~nP~NPTG~~~s~~~~~~l  195 (409)
T PLN00143        122 ANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENT------IAMVIINPGNPCGSVYSYEHLNKI  195 (409)
T ss_pred             CEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCC------EEEEEECCCCCCCCccCHHHHHHH
Confidence            456677788888888888999999999874  457899999998886544      47778899999999955   7888


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCC--cceeeecccccccc-CCcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY--VDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~--~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +++|++||+++++|++|....+....... ...+..  --+++.+..|.+.. ...+|+++..++..+.+.......+..
T Consensus       196 ~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~  274 (409)
T PLN00143        196 AETARKLGILVIADEVYGHIVFGSKPFVP-MGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKK  274 (409)
T ss_pred             HHHHHHcCCeEEEEccccccccCCCCCcc-hhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHH
Confidence            88999999999999999765442111110 011111  12566778999544 478999887543211100000000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....       .                                .  .........+..++.......+++..++.++..
T Consensus       275 ~~~~-------~--------------------------------~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  313 (409)
T PLN00143        275 ALNP-------A--------------------------------P--FPPTFIQAAIPEILEKTTEDFFSKTINILRAAL  313 (409)
T ss_pred             HHhc-------c--------------------------------C--CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            0000       0                                0  000011112222222112345677777788888


Q ss_pred             HHHHHHhcCCCCeEEeCCC-CceeEEEEEcCC---c-hHHHHHHHHH-hccCcEEEEEeEECCeeEEEEEecCCCCCHHH
Q psy3048         263 KKFADLVEKDDRFELVCPP-SMGLVCFRLKGD---N-DLTNQLYERL-MSHKQIYIIKASFQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~---~-~~~~~l~~~L-~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~ed  336 (367)
                      +++.+.|+++++.....+| ....++++++..   . ....++...+ .+.|+....+..+...+++|++++.   ++++
T Consensus       314 ~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~---~~~~  390 (409)
T PLN00143        314 AFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV---EQSS  390 (409)
T ss_pred             HHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC---CHHH
Confidence            8888999887554333333 445566666420   1 1244555444 5667544333334446799998753   5889


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy3048         337 VAFAWNEISHQSSEMN  352 (367)
Q Consensus       337 id~li~~l~~~~~~~~  352 (367)
                      ++..++.|.+++++..
T Consensus       391 l~~al~rl~~~l~~~~  406 (409)
T PLN00143        391 LEDGLGRLKSFCGRHA  406 (409)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999877544

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.63  E-value=5.5e-14  Score=135.07  Aligned_cols=244  Identities=16%  Similarity=0.151  Sum_probs=157.8

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+.....    ...|+++..++.     .|++++++++++.+      .+|++++++|++|.+.|+++|++
T Consensus        92 ~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~t------klV~l~~p~NPtG~~~dl~~I~~  160 (382)
T TIGR02080        92 LLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQKP------KLVLIETPSNPLLRVVDIAKICH  160 (382)
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcCc------eEEEEECCCCCCCEecCHHHHHH
Confidence            4666777887655432    223556665542     38999999997655      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +||++|+++++|++|+.+....+ ..   .   .+|+++.+.+||+.++.+  .|++..++++..++... ...+.+   
T Consensus       161 la~~~g~~vvvD~a~~~~~~~~p-l~---~---gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~-~~~~~g---  229 (382)
T TIGR02080       161 LAKAVGAVVVVDNTFLSPALQNP-LA---L---GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW-WANNLG---  229 (382)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-hh---h---CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH-HHHccC---
Confidence            99999999999999976543221 11   1   359999999999998876  66666655543332110 000000   


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                    .....+..|..+  .+.+-+..+++++.+++..+
T Consensus       230 ----------------------------------------------~~~sp~~a~l~l--r~l~tl~~R~~~~~~na~~~  261 (382)
T TIGR02080       230 ----------------------------------------------VTGGAFDSYLTL--RGLRTLVARMRLQQRNAQAI  261 (382)
T ss_pred             ----------------------------------------------CCCCHHHHHHHH--cccchHHHHHHHHHHHHHHH
Confidence                                                          001123344433  35567777888999999999


Q ss_pred             HHHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--EE
Q psy3048         266 ADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--SF  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--~~  317 (367)
                      .+.|+++|.++ +..|.                ..++++|.+++.......+.+.|.--.         .+...|.  .+
T Consensus       262 a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~  341 (382)
T TIGR02080       262 VEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTH  341 (382)
T ss_pred             HHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCccCc
Confidence            99999999876 44431                236899999752222345666543211         0111110  00


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                                .  ..+.+|+|+.     -||++.+++.|++.+++
T Consensus       342 ~~~~~~~~~~~gi~~~liRlsvG-----lE~~~dl~~dl~~al~~  381 (382)
T TIGR02080       342 AAMGPEARAEAGISDTLLRLSVG-----LEDADDLIADLEQGLRA  381 (382)
T ss_pred             ccCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence                      1  1458999774     36888999999888763

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.63  E-value=2.6e-14  Score=137.91  Aligned_cols=245  Identities=16%  Similarity=0.145  Sum_probs=161.6

Q ss_pred             eEEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.....    .+...|+++++++..     +.+++++++++.+      .+|++++++|++|.+.|+++|+
T Consensus       105 D~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~t------klV~le~p~Np~~~~~di~~I~  173 (394)
T PRK07050        105 DDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPNT------RLIWLEAPGSVTMEVPDVPAIT  173 (394)
T ss_pred             CEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCCCCccHhhHHHHH
Confidence            356667778887554    445679999988753     4578888887665      4888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|+++++|++|+.+....+ .   ..|   +|+.+.+.+|++.+..+  .|++++++++..++... ...+++. 
T Consensus       174 ~ia~~~gi~livD~a~a~~~~~~~-l---~~G---aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~-~~~~~G~-  244 (394)
T PRK07050        174 AAARARGVVTAIDNTYSAGLAFKP-F---EHG---VDISVQALTKYQSGGSDVLMGATITADAELHAKLKL-ARMRLGI-  244 (394)
T ss_pred             HHHHHcCCEEEEECCcccccccCH-H---HcC---CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHH-HHHhcCC-
Confidence            999999999999999987654322 1   123   49999999999987665  56666655544332210 0000000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                      ...++..|.+++  +.+.+..++++..+.+.+
T Consensus       245 ------------------------------------------------~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~  274 (394)
T PRK07050        245 ------------------------------------------------GVSADDCSLVLR--GLPSLQVRLAAHDRSALE  274 (394)
T ss_pred             ------------------------------------------------CCCHHHHHHHHc--CCCcHHHHHHHHHHHHHH
Confidence                                                            011233344433  455667788888899999


Q ss_pred             HHHHhcCCCCeEEeC-C-----C-----------CceeEEEEEcCC--chHHHHHHHHHhccCc---------EEEEEeE
Q psy3048         265 FADLVEKDDRFELVC-P-----P-----------SMGLVCFRLKGD--NDLTNQLYERLMSHKQ---------IYIIKAS  316 (367)
Q Consensus       265 l~~~L~~~~g~~~~~-~-----~-----------~~~~v~f~~~~~--~~~~~~l~~~L~~~g~---------~~~~~~~  316 (367)
                      +.+.|+++|++.-+. |     |           ..++++|.+.+.  .....++.+.|...+.         +.. |..
T Consensus       275 la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~-~~~  353 (394)
T PRK07050        275 VAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAM-PYD  353 (394)
T ss_pred             HHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEe-eCc
Confidence            999999988865432 2     1           246788888652  2344567776654331         111 110


Q ss_pred             -----E----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 -----F----QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 -----~----~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                           .    ...+.+|+|+.     -||++.+++.|++.++.+
T Consensus       354 ~~~~~~~~~~~~~~~iR~svG-----lE~~~dl~~dl~~al~~~  392 (394)
T PRK07050        354 VASMRTAKWPHRGTLVRLYIG-----LEDEADLIADLEQALEAA  392 (394)
T ss_pred             ccccchhhcCCCCCEEEEEeC-----cCCHHHHHHHHHHHHHHh
Confidence                 0    11358999774     367888899998887754

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.63  E-value=4.5e-14  Score=137.04  Aligned_cols=262  Identities=9%  Similarity=-0.005  Sum_probs=158.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++..+......+...+.+++.++++  +++.+|+++|++++.+.+      .+|++++++|+||.+.   ++++
T Consensus       117 gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~s~~~~~~  190 (402)
T PRK06107        117 GDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRT------RWLILNAPSNPTGAVYSRAELRA  190 (402)
T ss_pred             CCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcCc------eEEEEECCCCCCCcCcCHHHHHH
Confidence            4456667777777777777778888888875  346799999999886543      4778889999999885   4677


Q ss_pred             HHHHHhhc-CcEEEEecccccccccChh---hhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcc
Q psy3048         105 LGPICQEY-NIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       105 I~~l~~~~-gi~l~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      |+++|++| |+++++|.+|+...+....   ......+...--++..+.+|.++.| ..+|+++... +.+.. +.....
T Consensus       191 l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~-~~~~~-~~~~~~  268 (402)
T PRK06107        191 LADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPA-DLIAA-INKLQS  268 (402)
T ss_pred             HHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCH-HHHHH-HHHHHH
Confidence            78889998 9999999999754332111   1111111111235556679999633 5578877632 22221 100000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAYLRK  257 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~~~~  257 (367)
                      +...                                              ..   ..+...++...+  +...+++..++
T Consensus       269 ~~~~----------------------------------------------~~---s~~~q~~~~~~l~~~~~~~~~~~~~  299 (402)
T PRK06107        269 QSSS----------------------------------------------CP---SSISQAAAAAALNGDQSFVTESVAV  299 (402)
T ss_pred             hccc----------------------------------------------CC---ChHHHHHHHHHhcCChHHHHHHHHH
Confidence            0000                                              00   011222222222  23445666667


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcC-------Cc---hHHHHHHHHHh-ccCcEEEEEeEECCeeEEEEE
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKG-------DN---DLTNQLYERLM-SHKQIYIIKASFQGRPFLRFV  326 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~-------~~---~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~  326 (367)
                      ..+..+.+.+.|++++|+.+..+.....+++++..       ..   ....++.+.|. +.|+....+..+...+++|++
T Consensus       300 ~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis  379 (402)
T PRK06107        300 YKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLS  379 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE
Confidence            77888888899988878776544333333444421       01   12346666554 556544433333335799998


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +..   +++++++.++.|.++++++
T Consensus       380 ~~~---~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        380 IAT---SLETLEEACARIERAVAAL  401 (402)
T ss_pred             eCC---CHHHHHHHHHHHHHHHHhc
Confidence            753   5899999999999887764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.63  E-value=9.9e-14  Score=136.88  Aligned_cols=267  Identities=11%  Similarity=0.077  Sum_probs=166.7

Q ss_pred             ceEEEecCCcchhHHHHHH-hCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chh
Q psy3048          30 RLVAYASDQSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~-~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~  103 (367)
                      .-.|++.+..+..+...+. ..|++++.|+++  +++.+|+++|++++++..+++..+.+|++++|+||||.+-   .++
T Consensus       135 Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~  214 (468)
T PLN02450        135 GDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELN  214 (468)
T ss_pred             CCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHH
Confidence            4466677788888877777 489999999984  5678899999999977544444466788889999999985   466


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhh---C-----CC--CCcceeeeccccccc-cCCcceeEEEecchhhhh
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK---R-----GL--EYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTN  172 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~---~-----~~--~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~  172 (367)
                      +|.++|++||+++++|++|+...+..+.+...+   .     +.  ..--++..+..|.++ .+..+|+++..+..... 
T Consensus       215 ~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~-  293 (468)
T PLN02450        215 LLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVS-  293 (468)
T ss_pred             HHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHH-
Confidence            788889999999999999986544221111100   0     00  011356778899986 66889998875433222 


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH----
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL----  248 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  248 (367)
                      .......+.  .                                                 ...+...++...+..    
T Consensus       294 ~~~~~~~~~--~-------------------------------------------------~s~~~Q~a~~~~L~~~~~~  322 (468)
T PLN02450        294 AATKMSSFG--L-------------------------------------------------VSSQTQYLLSALLSDKKFT  322 (468)
T ss_pred             HHHHHhhcC--C-------------------------------------------------CCHHHHHHHHHHhCCchhH
Confidence            110000000  0                                                 000111121222211    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC---c--hHHHHHHHHHhc-cCcEEEEEeEE-C--
Q psy3048         249 -KGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD---N--DLTNQLYERLMS-HKQIYIIKASF-Q--  318 (367)
Q Consensus       249 -~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~---~--~~~~~l~~~L~~-~g~~~~~~~~~-~--  318 (367)
                       .-+++..++..+..+.+.+.|+++ |+.+..+.....++++++..   .  ....++.++|.+ .| +.+.|+.. .  
T Consensus       323 ~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~g-V~v~PG~~f~~~  400 (468)
T PLN02450        323 KNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVK-LNISPGSSCHCT  400 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCC-EEEeCccccCCC
Confidence             235566677778888888889887 77654333333555565421   1  112356667765 46 45555432 2  


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +++++|++++.  .++++++..++.|++++++..
T Consensus       401 ~~g~~Rl~f~~--~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        401 EPGWFRVCFAN--MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             CCCEEEEEecC--CCHHHHHHHHHHHHHHHHhcc
Confidence            35799997753  357899999999999887654

>PRK08960 hypothetical protein; Provisional

Probab=99.63  E-value=3.5e-14  Score=137.09  Aligned_cols=259  Identities=10%  Similarity=-0.026  Sum_probs=157.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      +.-.|++++.+|.+....+...|.+++.++++.  ++.+|+++|++++++.+      .++++++++|+||.+-+   ++
T Consensus       115 ~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~i~~p~NPtG~~~~~~~~~  188 (387)
T PRK08960        115 PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADT------VGALVASPANPTGTLLSRDELA  188 (387)
T ss_pred             CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccc------eEEEEECCCCCCCcCcCHHHHH
Confidence            345677788999999999988999999998864  46899999999887654      47788899999999865   56


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|+++|++||+++++|++|....+..+ ... ......-.++..+.+|.++ ....+|+++..+ +.+.........+  
T Consensus       189 ~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~-~~~~~~~~~~~~~--  263 (387)
T PRK08960        189 ALSQALRARGGHLVVDEIYHGLTYGVD-AAS-VLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPP-AAVPELEKLAQNL--  263 (387)
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCC-CCC-hhhccCCEEEEeecccccCCcccEEEEEEcCH-HHHHHHHHHHhhh--
Confidence            677789999999999999975433211 111 1112111356677899886 335588988743 2222110000000  


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                                                  .. +...+....+...+.......+++..++..+..
T Consensus       264 --------------------------------------------~~-~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~  298 (387)
T PRK08960        264 --------------------------------------------YI-SASTPAQHAALACFEPETLAILEARRAEFARRR  298 (387)
T ss_pred             --------------------------------------------cc-CCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence                                                        00 000011112222232111244556666677778


Q ss_pred             HHHHHHhcCCCCeEEeC-CCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEe-EEC---CeeEEEEEecCCCCCHHH
Q psy3048         263 KKFADLVEKDDRFELVC-PPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKA-SFQ---GRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~-~~~---~~~~lRi~~~~~~~~~ed  336 (367)
                      +.+.+.|+++ |+.+.. |.....++++++.......++.+.|.+ .|+ .+.++ .+.   +..++|+++..   +.++
T Consensus       299 ~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi-~v~pg~~f~~~~~~~~iRi~~~~---~~~~  373 (387)
T PRK08960        299 DFLLPALREL-GFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHV-AFTPGLDFGRHQAGQHVRFAYTQ---SLPR  373 (387)
T ss_pred             HHHHHHHHhc-CCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCE-EEcCchHhCCCCCCCeEEEEecC---CHHH
Confidence            8888888886 665433 334444555554311224678877764 564 44443 222   23599998753   4666


Q ss_pred             HHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQS  348 (367)
Q Consensus       337 id~li~~l~~~~  348 (367)
                      +...++.|++++
T Consensus       374 l~~al~~l~~~~  385 (387)
T PRK08960        374 LQEAVERIARGL  385 (387)
T ss_pred             HHHHHHHHHHHH
Confidence            777666666554

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=8.7e-14  Score=133.60  Aligned_cols=252  Identities=11%  Similarity=0.001  Sum_probs=163.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++.+.++......++..|++++.++.++++.+|+++|++++++.+      .++++++++|+||.+-|.+++.+++
T Consensus       112 gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~  185 (371)
T PRK05166        112 GDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVL  185 (371)
T ss_pred             CCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            3456677888888888888999999999998778999999999987655      3777899999999998877766666


Q ss_pred             hh--cCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         110 QE--YNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       110 ~~--~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +.  +++++++|++|+-+....+  ...........--++..+..|.++ ....+|+++..++.......... ..    
T Consensus       186 ~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~-~~----  260 (371)
T PRK05166        186 DATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVR-TP----  260 (371)
T ss_pred             HhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhc-cC----
Confidence            53  4899999999875442110  100011111111366778899997 55778887775544332211100 00    


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~  263 (367)
                                +                               .      ...+...+++..+ ..+.+++..+...+..+
T Consensus       261 ----------~-------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~  293 (371)
T PRK05166        261 ----------F-------------------------------N------VNGAAQAAALAALDDEEHLAKGVALALAERE  293 (371)
T ss_pred             ----------C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                      0                               0      0011222222222 23446666677778888


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++.+.|++. |+.+ .++..+.+++++..   ...++.+.|.++|+ .+.+.. .....++|+++.    +.++.+++++
T Consensus       294 ~l~~~L~~~-g~~~-~p~~g~fl~~~~~~---~~~~l~~~l~~~gi-~v~p~~~~~~~~~iRi~~~----~~~~~~~l~~  363 (371)
T PRK05166        294 RLKKELAEM-GYRI-APSRANFLFFDARR---PASAVAEALLRQGV-IVKPWKQPGFETFIRVSIG----SPEENDHFVA  363 (371)
T ss_pred             HHHHHHHHC-cCee-CCCcCCEEEEeCCC---CHHHHHHHHHHCCe-EEecCCCCCCCCeEEEEcC----CHHHHHHHHH
Confidence            899999887 7764 45555555555432   25678889988885 444432 223679999764    4778999999


Q ss_pred             HHHHHHH
Q psy3048         343 EISHQSS  349 (367)
Q Consensus       343 ~l~~~~~  349 (367)
                      +|+++.+
T Consensus       364 ~l~~i~~  370 (371)
T PRK05166        364 ALDKVLE  370 (371)
T ss_pred             HHHHHhh
Confidence            9988743

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.63  E-value=3.5e-14  Score=143.16  Aligned_cols=265  Identities=18%  Similarity=0.161  Sum_probs=171.3

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-C----CCcC-----HHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-N----GVLR-----GDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~----~~~d-----~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      +.-.|++++++|.|+..++.+.|+.++++++.. .    +.++     ++.+++++++..+ ...|..++++++ |+.|.
T Consensus       234 ~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~-ak~p~~~vit~p-TYdG~  311 (714)
T PRK15400        234 AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGL  311 (714)
T ss_pred             CCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCcc-ccCccEEEEECC-CCccE
Confidence            355788899999999999999999999998752 1    3456     8999999987653 234656777776 88999


Q ss_pred             cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC-CCc---c--eeeeccccccccCCcceeEEEecchhhh-
Q psy3048          99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYV---D--SFAFNAHKWLLTNHDCSAMWVKNANHLT-  171 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~---D--~~~~~~hK~l~~p~g~g~l~~~~~~~~~-  171 (367)
                      +.|+++|.++|+.++  ++||+|||+...+.+.++.. ..+ ..+   |  +++-|.||.+.+-.+++++.++..  +. 
T Consensus       312 ~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~-sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~--vd~  386 (714)
T PRK15400        312 LYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD--VNE  386 (714)
T ss_pred             ecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCc-ChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC--CCH
Confidence            999999999999987  69999999987666544311 112 223   4  999999999999999988887542  11 


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL  251 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  251 (367)
                      +.+  ...|....     +++++|-+                                      ..++-.+.+.+....-
T Consensus       387 ~~~--n~a~~m~~-----STSPsY~l--------------------------------------~ASLD~a~~~m~~~~G  421 (714)
T PRK15400        387 ETF--NEAYMMHT-----TTSPHYGI--------------------------------------VASTETAAAMMKGNAG  421 (714)
T ss_pred             HHH--HHHHHHHc-----CCCcHHHH--------------------------------------HHHHHHHHHHHHhhhh
Confidence            111  01111111     23344411                                      1122222223322223


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCC------eEEeCCC-----------------------------CceeEEEEEcCC---
Q psy3048         252 QAYLRKHISLAKKFADLVEKDDR------FELVCPP-----------------------------SMGLVCFRLKGD---  293 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~g------~~~~~~~-----------------------------~~~~v~f~~~~~---  293 (367)
                      ++.+++..+++..++++|.++++      |+++.+.                             ...-+++.+++.   
T Consensus       422 ~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~  501 (714)
T PRK15400        422 KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKD  501 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEeCCCCCC
Confidence            56777888999999999988877      7776422                             112233333331   


Q ss_pred             ------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         294 ------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       294 ------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                            ......+.+.|.+.|+ ++..+.   ...+=+ +.++..+++++++++++|.++-+.
T Consensus       502 g~~~~~Gipg~~v~~~L~e~gI-~~E~~d---~~~iLf-l~s~g~t~~~~~~L~~aL~~f~~~  559 (714)
T PRK15400        502 GTMSDFGIPASIVAKYLDEHGI-VVEKTG---PYNLLF-LFSIGIDKTKALSLLRALTDFKRA  559 (714)
T ss_pred             ccccccCCCHHHHHHHHHHcCC-EEEecC---CCeEEE-EeCCCCCHHHHHHHHHHHHHHHHh
Confidence                  1123466677777774 443322   223333 346788999999999999987543

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.63  E-value=5e-14  Score=137.97  Aligned_cols=255  Identities=11%  Similarity=0.010  Sum_probs=162.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEe-cCCCcccccCChh---hHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT-LGTTGTCAFDNLE---ELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~-~~~t~~G~i~dl~---~I~  106 (367)
                      -.|++.+.++......++..|++++.|+.++++ +|+++|++++++.+      .+++++ .++||||.+-+.+   +|.
T Consensus       166 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~~~------k~i~~~p~p~NPTG~~~s~~~~~~l~  238 (431)
T PRK15481        166 DSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQGA------RAVILTPRAHNPTGCSLSARRAAALR  238 (431)
T ss_pred             CEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhcCC------CEEEECCCCCCCCCccCCHHHHHHHH
Confidence            456667789999999999999999999997554 89999999986643      355565 8999999997775   999


Q ss_pred             HHHhhc-CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEY-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~-gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++| ++++++|++|+-.... + ....+.....--++..+..|.++....+|+++.. ++..... .....+..   
T Consensus       239 ~la~~~~~~~ii~De~Y~~~~~~-~-~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~-~~~~~~~-~~~~~~~~---  311 (431)
T PRK15481        239 NLLARYPQVLVIIDDHFALLSSS-P-YHSVIPQTTQRWALIRSVSKALGPDLRLAFVASD-SATSARL-RLRLNSGT---  311 (431)
T ss_pred             HHHHhcCCceEEecCchhhhccC-C-CCCCCcCCCCCEEEEeeeccccCCCceeEEEeCC-HHHHHHH-HHHHhccc---
Confidence            999999 9999999999755321 1 1111111111136777889999955667876653 2222211 00000000   


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKK  264 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~  264 (367)
                                                              +   ....+....+..+|..-. .+.+++..+...+..++
T Consensus       312 ----------------------------------------~---~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~  348 (431)
T PRK15481        312 ----------------------------------------Q---WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQK  348 (431)
T ss_pred             ----------------------------------------c---CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence                                                    0   000011122222222111 12355666777788888


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC---CeeEEEEEecCCCCCHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ---GRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.+.|++. |+.+..|.....++++++. +  ..++.+.|.++|+....+..+.   +..++|+++..  .++++++.++
T Consensus       349 ~~~~L~~~-~~~~~~p~gg~f~~~~l~~-~--~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~--~~~~~i~~~~  422 (431)
T PRK15481        349 LARALQQY-GIAIPSPGDGLNLWLPLDT-D--SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST--LNDAEINRLA  422 (431)
T ss_pred             HHHHHHHc-CCccccCCCeEEEEEECCC-C--HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC--CChHHHHHHH
Confidence            88888876 7765455566666776653 2  4678888888886544333331   13589998743  3589999999


Q ss_pred             HHHHHHH
Q psy3048         342 NEISHQS  348 (367)
Q Consensus       342 ~~l~~~~  348 (367)
                      +.|.+++
T Consensus       423 ~~l~~~~  429 (431)
T PRK15481        423 ADLHQAL  429 (431)
T ss_pred             HHHHHHh
Confidence            9998875

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.63  E-value=4.6e-14  Score=137.26  Aligned_cols=278  Identities=13%  Similarity=0.113  Sum_probs=161.1

Q ss_pred             EEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...+......+.    ..|+++.+++.     .|+++|++++++.++      +|++.+++|++|.+.|+++|.+
T Consensus        99 ~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~tk------lV~lesp~NPtG~v~dl~~I~~  167 (425)
T PRK06084         99 NIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDERTK------AVFCESIGNPAGNIIDIQALAD  167 (425)
T ss_pred             EEEEeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccCCc------EEEEeCCCCCCCeecCHHHHHH
Confidence            34455555554444332    25677776654     389999999987653      7788899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecch-hhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNAN-HLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~-~~~~~~~~~~~yl~~~~  185 (367)
                      +||+||+++++|++|+.+....+ ..   .   .+|+++.+.+||++++. ..|.+++.+.. ........  ..+... 
T Consensus       168 la~~~~i~vVvD~a~a~~~~~~p-~~---~---gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~--~~~~~~-  237 (425)
T PRK06084        168 AAHRHGVPLIVDNTVATPVLCRP-FE---H---GADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKER--FALLNT-  237 (425)
T ss_pred             HHHHcCCEEEEECCCcccccCCh-hh---c---CCCEEEECchhcccccccceeEEEEeCCccchhhcccc--cccccc-
Confidence            99999999999999986544221 11   1   35999999999999763 34555553221 01000000  001000 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                           ..+.|--..|..+..... ......        .......+.....+..|  +...+.+.+..++++..+++.++
T Consensus       238 -----~~~~~~~~~~~~~~g~~~-~~~~~~--------~~~~~~~g~~l~~~~a~--l~lrgl~tl~~R~~~~~~na~~l  301 (425)
T PRK06084        238 -----PDPSYHGVTYTEAFGPAA-FIGRCR--------VVPLRNMGAALSPFNAF--LILQGLETLALRMERHTENALKV  301 (425)
T ss_pred             -----CCcccccchhhhhcchHH-HHHHHH--------HHHHHhcCCCCCHHHHH--HHHcCcCcHHHHHHHHHHHHHHH
Confidence                 000110000000000000 000000        00001112223334444  44446778899999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C----------C--ceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe---
Q psy3048         266 ADLVEKDDRFE-LVCP-----P----------S--MGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA---  315 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~----------~--~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~---  315 (367)
                      .+.|+++|++. +..|     |          .  .++++|.+.+..+...++.+.|.--.         ...+.|.   
T Consensus       302 a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~  381 (425)
T PRK06084        302 ARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTT  381 (425)
T ss_pred             HHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCC
Confidence            99999999875 4433     1          1  35899999753333456666654211         0111111   


Q ss_pred             --EE-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 --SF-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 --~~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                        ..       .  .++.+|+|+.     -||.+.+++.|++.++..
T Consensus       382 h~~~~~~~~~~~gi~~~liR~svG-----lEd~~dLi~dl~~Al~~~  423 (425)
T PRK06084        382 HRQLNDEELEKAGVSRDMVRLSIG-----IEHIDDIIADLAQALDAS  423 (425)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence              00       0  1468999774     368999999999988754

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.62  E-value=4.2e-14  Score=135.30  Aligned_cols=188  Identities=18%  Similarity=0.103  Sum_probs=122.4

Q ss_pred             eEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|......+    ...|++++.++.++++    +    .+.+.+      .+|.+..++|++|.+.|+++|+
T Consensus        90 d~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~----~----~~~~~t------~lV~le~p~NPtg~v~di~~I~  155 (366)
T PRK07582         90 DTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMA----E----AALAGA------DLVLAETPSNPGLDVCDLAALA  155 (366)
T ss_pred             CEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChH----H----HhccCc------eEEEEECCCCCCCCccCHHHHH
Confidence            34555667776665543    3479999999875321    1    222333      4778899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc--eeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC--SAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|++++||++|+..... ....   .   .+|+++.+.|||+.+|.|+  |+++.++++..++... ...+... 
T Consensus       156 ~~a~~~g~~lvVD~t~~~~~~~-~p~~---~---g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~-~~~~~g~-  226 (366)
T PRK07582        156 AAAHAAGALLVVDNTTATPLGQ-RPLE---L---GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER-WRLLAGA-  226 (366)
T ss_pred             HHHHHcCCEEEEECCCCCcccc-Cchh---c---CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH-HHHHhCC-
Confidence            9999999999999998532211 1111   1   3599999999999988874  6666654443332110 0000000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                      ....+..|..++  +.+-++.++++..+++..
T Consensus       227 ------------------------------------------------~~~~~~a~l~~r--~l~tl~~R~~~~~~na~~  256 (366)
T PRK07582        227 ------------------------------------------------IPGPFEAWLAHR--SLGTLGLRFARQCANALA  256 (366)
T ss_pred             ------------------------------------------------CCCHHHHHHHHh--ccccHHHHHHHHHHHHHH
Confidence                                                            011233343333  344567788889999999


Q ss_pred             HHHHhcCCCCeEEeC-C-----C-----------CceeEEEEEc
Q psy3048         265 FADLVEKDDRFELVC-P-----P-----------SMGLVCFRLK  291 (367)
Q Consensus       265 l~~~L~~~~g~~~~~-~-----~-----------~~~~v~f~~~  291 (367)
                      +.+.|+++|.+.-+. |     |           ..++++|.+.
T Consensus       257 la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~  300 (366)
T PRK07582        257 VAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA  300 (366)
T ss_pred             HHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC
Confidence            999999999875432 2     2           3578999986

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.62  E-value=2.6e-14  Score=137.33  Aligned_cols=266  Identities=11%  Similarity=0.099  Sum_probs=163.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...++...|++++.++.+++ +.+|+++|++++++.+      .+|++++   ++|...|+++|.++
T Consensus        71 Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~t------k~i~~~~---~~G~~~~~~~i~~l  141 (375)
T PRK11706         71 GDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKT------RAIVPVH---YAGVACEMDTIMAL  141 (375)
T ss_pred             CCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCC------eEEEEeC---CCCCccCHHHHHHH
Confidence            446778889999999999999999999999754 6899999999987654      3555553   58999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCC-----cccc
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTD-----RVYL  181 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~-----~~yl  181 (367)
                      |++||+++++|+||+.+......  . . + ...|+-++|.|  |.+.++ ..|++++.+++...+.....     ....
T Consensus       142 a~~~~i~vIeD~a~a~g~~~~~~--~-~-g-~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (375)
T PRK11706        142 AKKHNLFVVEDAAQGVMSTYKGR--A-L-G-TIGHIGCFSFHETKNYTAG-EGGALLINDPALIERAEIIREKGTNRSQF  215 (375)
T ss_pred             HHHcCCEEEEECccccccccCCe--e-e-e-cCcCEEEEeCCCCcccccc-CCeEEEECCHHHHHHHHHHHHcCCCcchh
Confidence            99999999999999876532111  0 0 1 11255555555  998653 33555555554443221000     0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ....      ...|                             .+. ..+..+..-.+.+++.....+.++++.++.+++
T Consensus       216 ~~~~------~~~~-----------------------------~~~-~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~  259 (375)
T PRK11706        216 FRGQ------VDKY-----------------------------TWV-DIGSSYLPSELQAAYLWAQLEAADRINQRRLAL  259 (375)
T ss_pred             hccC------CCcc-----------------------------eee-ecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000      0000                             000 001112222334444444455678888999999


Q ss_pred             HHHHHHHhcCCC--C-eEEeC-CCC----ceeEEEEEcCCchHHHHHHHHHhccCcEEE---EEeEE----------C--
Q psy3048         262 AKKFADLVEKDD--R-FELVC-PPS----MGLVCFRLKGDNDLTNQLYERLMSHKQIYI---IKASF----------Q--  318 (367)
Q Consensus       262 a~~l~~~L~~~~--g-~~~~~-~~~----~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~---~~~~~----------~--  318 (367)
                      ++++.+.|++++  + +.+.. ++.    ...+.+.++. .....++.+.|.++|+...   .+..+          .  
T Consensus       260 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~  338 (375)
T PRK11706        260 WQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD-LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGE  338 (375)
T ss_pred             HHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC-cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCC
Confidence            999999999876  2 44322 221    2233444433 2235688899998885311   01000          0  


Q ss_pred             -------CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         319 -------GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       319 -------~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                             ....+-+ ++++..+++|+++++++|+++.
T Consensus       339 ~p~a~~~~~~~l~l-P~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        339 DRYTTKESERLLRL-PLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             ChHHHHHHhCcEec-cCCCCCCHHHHHHHHHHHHHHh
Confidence                   0123545 4677889999999999998863

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.62  E-value=9.7e-14  Score=143.43  Aligned_cols=265  Identities=12%  Similarity=0.062  Sum_probs=167.7

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +..|++++..|+.....++    ..|++++.++        +++|++.+  ++      ..+++++| +..|.++|+++|
T Consensus       153 ~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~~--~~------~~v~~q~P-n~~G~ied~~~i  215 (939)
T TIGR00461       153 ANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKAV--DV------FGCLLQYP-ATDGSILDYKQL  215 (939)
T ss_pred             CCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhcC--CE------EEEEEECC-CCCeEEecHHHH
Confidence            4568889999999775554    5788888874        34566555  22      46667776 458999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc----cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL----TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~----~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++++|+.|.++++++=.-+..+..++.++   |   +|+++.++++|..    +.++.|++.+++.  +.+.+  ..+.+
T Consensus       216 ~~~~h~~gal~~~~ad~~al~ll~~Pge~---G---aDi~vg~~q~fg~p~g~GGP~aG~~a~~~~--l~r~l--Pgriv  285 (939)
T TIGR00461       216 IDALHSHKSLVSVAADLMALTLLTPPGHY---G---ADIVLGSSQRFGVPMGYGGPHAAFFAVKDE--YNRKM--PGRIV  285 (939)
T ss_pred             HHHHHHcCCEEEEEechHHhCCcCCHHHc---C---CcEEeeCCCccCCCCCCCCCceeeeeecHh--hHhhC--CCCce
Confidence            99999999999997644333333333222   4   4999777776644    2446888888653  32221  11222


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      +.....  .....|.+.             +....+... ..+.....|+..+ .++....++..+|.+|++++.++...
T Consensus       286 G~s~D~--~G~~~~~l~-------------LqtReqhIr-RekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~  349 (939)
T TIGR00461       286 GVSKDA--LGNTALRLA-------------LQTREQHIR-RDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHS  349 (939)
T ss_pred             eEEecC--CCCccceee-------------ccccccccc-ccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            211000  111122000             000010000 0011111122211 12223344677899999999999999


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      ++.|+.+.|.+ .|+++..++.+..+.+++..  ...+++.+++.++|+. +..   ...+.+++|+ +..+|++||+.+
T Consensus       350 ~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~--~~~~~i~~~~~~~gi~-l~~---~~~~~i~~s~-~E~~t~~di~~l  421 (939)
T TIGR00461       350 LTSILANGLEN-DPHELINKTWFDTLTVKVGN--GISSELLKAAEEFNIN-LRA---VDTTTVGIAL-DETTTKADVENL  421 (939)
T ss_pred             HHHHHHHHHHh-CCCcccCCCccceEEEEeCC--CCHHHHHHHHHHCCCe-eee---cCCCEEEEEe-ecCCCHHHHHHH
Confidence            99999999999 59999888778888888742  2367899999999964 322   2235799976 678899999999


Q ss_pred             HHHHH
Q psy3048         341 WNEIS  345 (367)
Q Consensus       341 i~~l~  345 (367)
                      ++.+.
T Consensus       422 ~~~~~  426 (939)
T TIGR00461       422 LKVFD  426 (939)
T ss_pred             HHHhc
Confidence            99995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07908 hypothetical protein; Provisional

Probab=99.62  E-value=5.3e-14  Score=133.98  Aligned_cols=241  Identities=14%  Similarity=0.083  Sum_probs=155.4

Q ss_pred             ecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCc
Q psy3048          35 ASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNI  114 (367)
Q Consensus        35 ~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi  114 (367)
                      +...++......++..|++++.++.++++.+|++.++    +.+      .++++++++|+||.+-+.++|.++|++ +.
T Consensus       101 v~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~~------~~i~l~np~NPTG~~~~~~~l~~l~~~-~~  169 (349)
T PRK07908        101 VVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAVP----DDA------DLVVIGNPTNPTSVLHPAEQLLALRRP-GR  169 (349)
T ss_pred             EeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHhc----cCC------CEEEEcCCCCCCCCCcCHHHHHHHHhc-CC
Confidence            3456666667778889999999998766888988553    233      377889999999999999999999974 78


Q ss_pred             EEEEecccccccccChhhhhhhCCCCCcceee-eccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCCCCC
Q psy3048         115 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA-FNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQS  192 (367)
Q Consensus       115 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~-~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  192 (367)
                      ++++|++|+-.. ... ... +......++++ .+.+|.++ .+..+|+++.. ++.++........             
T Consensus       170 ~iIvDe~y~~~~-~~~-~~~-l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~-~~~~~~~~~~~~~-------------  232 (349)
T PRK07908        170 ILVVDEAFADAV-PGE-PES-LAGDDLPGVLVLRSLTKTWSLAGLRVGYALGA-PDVLARLTRGRAH-------------  232 (349)
T ss_pred             EEEEECcchhhc-cCC-ccc-cccccCCCEEEEeecccccCCccceeeeeecC-HHHHHHHHhcCCC-------------
Confidence            999999987532 111 111 11111124444 47899876 55668998864 3333322110000             


Q ss_pred             CCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3048         193 PDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD  272 (367)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~  272 (367)
                        +                               ..  +. .....+...+.......+++..++..+..+++.+.|+++
T Consensus       233 --~-------------------------------~~--~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  276 (349)
T PRK07908        233 --W-------------------------------PV--GT-LQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV  276 (349)
T ss_pred             --C-------------------------------Cc--cH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              0                               00  00 000111111111122345667778888899999999887


Q ss_pred             CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EEC--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         273 DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQ--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       273 ~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                       |+++..++..+.++++++.    ..++.+.|.++|+. +.++ .+.  ++.++|+++.    +++|+++|+++|++++.
T Consensus       277 -~~~~~~p~~g~~~~~~~~~----~~~~~~~l~~~gI~-v~~g~~f~~~~~~~vRis~~----~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        277 -GARVVDPAAAPFVLVRVPD----AELLRKRLRERGIA-VRRGDTFPGLDPDYLRLAVR----PRAEVPVLVQALAEILK  346 (349)
T ss_pred             -CcEeccCCCceEEEEECCc----HHHHHHHHHhCCEE-EEECCCCCCCCCCeEEEEeC----CCccHHHHHHHHHHHHh
Confidence             8887766677777777753    45777788778854 4443 222  3579999773    57899999999998754

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.62  E-value=3.8e-14  Score=136.34  Aligned_cols=240  Identities=17%  Similarity=0.203  Sum_probs=153.2

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+.    ...+...|++++.++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus        95 ~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~~~t------klV~le~p~np~g~~~dl~~I~~  163 (380)
T TIGR01325        95 HVVASRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVKPNT------KLVFVETPSNPLGELVDIAALAE  163 (380)
T ss_pred             EEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCCeeeCHHHHHH
Confidence            355566666553    33455679999988764     7899998886654      48888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||++|+++++|++|+.+....+ ..   .   .+|+++.+.+|+++++. ..|.+++.+++.++...    .+....  
T Consensus       164 la~~~gi~livD~a~~~~~~~~p-l~---~---g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~----~~~~~~--  230 (380)
T TIGR01325       164 LAHAIGALLVVDNVFATPVLQQP-LK---L---GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA----VYLRHT--  230 (380)
T ss_pred             HHHHcCCEEEEECCCcccccCCc-hh---h---CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH----HHHHhh--
Confidence            99999999999999975433221 11   1   35999999999999763 33344443443332211    000000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  +..+..+..+.+++  +.+.+..++++..+.++++.
T Consensus       231 --------------------------------------------g~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la  264 (380)
T TIGR01325       231 --------------------------------------------GPAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIA  264 (380)
T ss_pred             --------------------------------------------CCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHH
Confidence                                                        00011223333333  45666778889999999999


Q ss_pred             HHhcCCCCeEE-eCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C----c---EEEEEe-----
Q psy3048         267 DLVEKDDRFEL-VCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K----Q---IYIIKA-----  315 (367)
Q Consensus       267 ~~L~~~~g~~~-~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g----~---~~~~~~-----  315 (367)
                      +.|+++|+++- ..|     |           ..++++|.+++ .+...++.+.|.--  +    .   ....|.     
T Consensus       265 ~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~-~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~  343 (380)
T TIGR01325       265 EWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVAD-RAAAWKVLDAVELVSITNNLGDAKSTITHPATTTHG  343 (380)
T ss_pred             HHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-HHHHHHHHHcCCcceEcccCCCCCeeeeCCCccCcc
Confidence            99999988753 332     1           24689999873 34445666665321  1    0   011110     


Q ss_pred             EE-------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         316 SF-------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       316 ~~-------~~--~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ..       .|  ++.+|+|+.     -||.+.+++.|++.
T Consensus       344 ~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~a  379 (380)
T TIGR01325       344 RMQPEERAAAGIGDGLVRLSVG-----LEDVDDLIADLKRA  379 (380)
T ss_pred             cCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHhh
Confidence            00       11  468999774     36788888888765

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK09105 putative aminotransferase; Provisional

Probab=99.62  E-value=9.8e-14  Score=133.11  Aligned_cols=244  Identities=11%  Similarity=0.029  Sum_probs=157.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|..+...++..|++++.++.++++.+|++++++. .+.+      .++++++++|+||.+.+.++|.++++
T Consensus       120 d~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~------~~v~l~nP~NPTG~~~~~~~l~~l~~  192 (370)
T PRK09105        120 AGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNA------GLIYICNPNNPTGTVTPRADIEWLLA  192 (370)
T ss_pred             CEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-CCCC------CEEEEeCCCCCCCcCcCHHHHHHHHH
Confidence            4566778899999999999999999999887888999999876 2323      47888999999999988888888765


Q ss_pred             h--cCcEEEEecccccccccChhhhhhhCCCCCcceeee-cccccccc-CCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         111 E--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAF-NAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       111 ~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~-~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      .  +|+++++|++|..+........  +.. ...+++++ +..|.++. +..+|+++.. ++.+......       ...
T Consensus       193 ~~~~~~~lIvDEaY~~f~~~~s~~~--~~~-~~~~vi~~~SfSK~~g~~GlRiG~~v~~-~~~i~~l~~~-------~~~  261 (370)
T PRK09105        193 NKPAGSVLLVDEAYIHFSDAPSVVD--LVA-QRKDLIVLRTFSKLYGMAGMRLGLAAAR-PDLLAKLARF-------GHN  261 (370)
T ss_pred             hCCCCcEEEEECchHHhccCcchHH--HHh-hCCCEEEEecccHhhcCCccceeeeecC-HHHHHHHHhc-------CCC
Confidence            3  4899999999953221110011  111 12255554 66788863 3558888863 3333221110       000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l  265 (367)
                           .                                         .......+++..+. .+.+++..++..+..+++
T Consensus       262 -----~-----------------------------------------~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l  295 (370)
T PRK09105        262 -----P-----------------------------------------LPVPAAAAGLASLRDPKLVPQRRAENAAVREDT  295 (370)
T ss_pred             -----C-----------------------------------------cCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence                 0                                         00112222232222 344566667788888899


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .+.|++. |+++. ++..+.+.++++.   ...++.+.|.++|+ .+.......++++|+++.    +++++++++++|+
T Consensus       296 ~~~L~~~-g~~~~-~~~~~f~~~~~~~---~~~~l~~~L~~~gI-~v~~~~~~~~~~~Ris~~----~~~~~~~l~~al~  365 (370)
T PRK09105        296 IAWLKKK-GYKCT-PSQANCFMVDVKR---PAKAVADAMAKQGV-FIGRSWPIWPNWVRVTVG----SEEEMAAFRSAFA  365 (370)
T ss_pred             HHHHHHC-CCCcC-CCCCcEEEEeCCC---CHHHHHHHHHHCCc-EEecCCCCCCCeEEEEcC----CHHHHHHHHHHHH
Confidence            9999886 77654 3555555555532   24688888888875 443221122579999764    5788999999998


Q ss_pred             HHH
Q psy3048         346 HQS  348 (367)
Q Consensus       346 ~~~  348 (367)
                      ++.
T Consensus       366 ~~~  368 (370)
T PRK09105        366 KVM  368 (370)
T ss_pred             HHh
Confidence            875

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.62  E-value=1.6e-13  Score=131.63  Aligned_cols=257  Identities=9%  Similarity=-0.016  Sum_probs=163.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++.+.+|..+...+...|++++.++.+.+ .+|++++++++....     +.+++++.++|+||.+-+.+++.+++
T Consensus       108 gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~~-----~~~i~l~~P~NPtG~~~~~~~l~~l~  181 (369)
T PRK08153        108 GDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAARREN-----APLVYLANPDNPMGSWHPAADIVAFI  181 (369)
T ss_pred             CCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcccC-----CcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            456777888999888888889999999998655 478998887764321     24777789999999998888877777


Q ss_pred             hh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         110 QE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       110 ~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +.  +|+++++|++|+...... .... +.....-.++..+..|.++ .+..+|+++.. ++...........       
T Consensus       182 ~~~~~~~~lI~DE~y~~~~~~~-~~~~-~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~-~~~~~~l~~~~~~-------  251 (369)
T PRK08153        182 EALPETTLLVLDEAYCETAPAG-AAPP-IDTDDPNVIRMRTFSKAYGLAGARVGYAIGA-PGTIKAFDKVRNH-------  251 (369)
T ss_pred             HhCCCCcEEEEeCchhhhcCcc-cchh-hhhcCCCEEEEecchHhccCcchheeeeecC-HHHHHHHHHhhcC-------
Confidence            64  389999999997543211 1111 0101111356777899997 44667888763 2322211100000       


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l  265 (367)
                              +                               .      ...+...++...+. .+.+++..+...+..+++
T Consensus       252 --------~-------------------------------~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~  286 (369)
T PRK08153        252 --------F-------------------------------G------MNRIAQAAALAALKDQAYLAEVVGKIAAARDRI  286 (369)
T ss_pred             --------C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                    0                               0      00122222222222 234566666777888888


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .+.|++. |+.+. |+..+.+.+.+........++.+.|.++|+....++...++.++|+++.    +++|+++++++|+
T Consensus       287 ~~~L~~~-g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~----~~~~~~~~~~al~  360 (369)
T PRK08153        287 AAIARAN-GLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG----PDEELDLFAEALP  360 (369)
T ss_pred             HHHHHHC-CCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----CHHHHHHHHHHHH
Confidence            8888876 66643 4555666666543233467889999988854323433234569999764    5899999999999


Q ss_pred             HHHHHhhC
Q psy3048         346 HQSSEMNL  353 (367)
Q Consensus       346 ~~~~~~~~  353 (367)
                      ++.+.+++
T Consensus       361 ~~~~~~~~  368 (369)
T PRK08153        361 EALEAARK  368 (369)
T ss_pred             HHHHHhhc
Confidence            99876554

>PRK07337 aminotransferase; Validated

Probab=99.62  E-value=7.5e-14  Score=134.86  Aligned_cols=253  Identities=12%  Similarity=0.023  Sum_probs=157.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.+|.+....+...|++++.++.+.  ++.+|+++|++++++.+      .+|++++++|+||.+.   ++++
T Consensus       114 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~  187 (388)
T PRK07337        114 GDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERT------RGVLLASPSNPTGTSIAPDELRR  187 (388)
T ss_pred             CCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccc------eEEEEECCCCCCCcCcCHHHHHH
Confidence            34577778899999888888999999999863  47899999999887655      3777899999999985   4788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcce-eeeccccccccC-CcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS-FAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~-~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |+++|+++|+++++|++|....+.... .. .... ..++ ++.+.+|.++.| ..+|+++..+ ......... ..+..
T Consensus       188 i~~~a~~~~~~ii~De~y~~~~~~~~~-~~-~~~~-~~~vi~~~S~SK~~~~~G~RiG~~~~~~-~l~~~l~~~-~~~~~  262 (388)
T PRK07337        188 IVEAVRARGGFTIVDEIYQGLSYDAAP-VS-ALSL-GDDVITINSFSKYFNMTGWRLGWLVVPE-ALVGTFEKL-AQNLF  262 (388)
T ss_pred             HHHHHHHCCCEEEEeccccccccCCCC-cC-hhhc-cCCEEEEEechhhcCCchhheeeeecCH-HHHHHHHHH-HHHhc
Confidence            899999999999999998754332110 00 0111 1244 456789998643 5588888743 222211100 00000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---HHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---LKGLQAYLRKHI  259 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~~~~~~  259 (367)
                      ..                                                 ...+...+++..+.   ...+.+..++..
T Consensus       263 ~~-------------------------------------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~  293 (388)
T PRK07337        263 IC-------------------------------------------------ASALAQHAALACFEPDTLAIYERRRAEFK  293 (388)
T ss_pred             cC-------------------------------------------------CChHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            00                                                 00112222222221   233555566677


Q ss_pred             HHHHHHHHHhcCCCCeEEe-CCCCceeEEEEEcCC----chHHHHHHHHHh-ccCcEEEEEe-EEC---CeeEEEEEecC
Q psy3048         260 SLAKKFADLVEKDDRFELV-CPPSMGLVCFRLKGD----NDLTNQLYERLM-SHKQIYIIKA-SFQ---GRPFLRFVVTS  329 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~----~~~~~~l~~~L~-~~g~~~~~~~-~~~---~~~~lRi~~~~  329 (367)
                      +..+++.+.|+++ |+.+. .|.....++++++..    .....++.+.+. +.| +.+.++ .+.   +.+++|+++..
T Consensus       294 ~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~g-v~v~pg~~f~~~~~~~~~Ri~~~~  371 (388)
T PRK07337        294 RRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAG-VVLVPGRDFGPHAPRDYIRLSYAT  371 (388)
T ss_pred             HHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCC-EEEeCchhhCCCCCCCEEEEEecC
Confidence            7888888888886 66543 343445556666421    123457777755 456 444443 222   24699998753


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~  347 (367)
                         ++++++..++.|.++
T Consensus       372 ---~~~~l~~~l~rl~~~  386 (388)
T PRK07337        372 ---SMSRLEEAVARLGKL  386 (388)
T ss_pred             ---CHHHHHHHHHHHHHH
Confidence               477888888777664

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.61  E-value=2.6e-13  Score=131.63  Aligned_cols=217  Identities=12%  Similarity=0.093  Sum_probs=134.2

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++.+.+      .+|++.++.+++|.+.|    +++|.++|++||+++++|++|++.......+.....++ .
T Consensus       176 d~~~le~~i~~~~------~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~-~  248 (401)
T PRK00854        176 DAEALEAAITPNT------VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI-E  248 (401)
T ss_pred             CHHHHHHHhCCCe------EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC-C
Confidence            8899999986544      58889999999999976    99999999999999999999975322211111111233 3


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|..+++  |++.+.. .+|+++.++ +... .+.       ....     .                            
T Consensus       249 ~D~~~~~--K~l~gg~~~ig~v~~~~-~~~~-~l~-------~~~~-----~----------------------------  284 (401)
T PRK00854        249 ADVTLIG--KALSGGFYPVSAVLSNS-EVLG-VLK-------PGQH-----G----------------------------  284 (401)
T ss_pred             CCEEEec--ccccCCccCeEEEEEcH-HHHh-ccc-------CCCC-----C----------------------------
Confidence            5777764  9987652 466666643 2222 110       0000     0                            


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCchHHH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDNDLTN  298 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~  298 (367)
                         ..+   ++....+....++|+.+..   .+..++.+++++++.+.|+++. ...+.  .+...++.+.+.+......
T Consensus       285 ---~t~---~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~  354 (401)
T PRK00854        285 ---STF---GGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGAR  354 (401)
T ss_pred             ---CCC---CcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHH
Confidence               000   0111222334444544332   2356778888999999998863 22221  1233444444433233456


Q ss_pred             HHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       299 ~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      ++.+.|.++|+. +.+   .+..++|+++ +..++++||++++++|++++
T Consensus       355 ~~~~~L~~~GV~-v~~---~~~~~lR~~p-~~~~t~e~i~~~i~~l~~~l  399 (401)
T PRK00854        355 QYCEALKERGLL-AKD---THDHTIRLAP-PLVITREQVDWALEQIAKVL  399 (401)
T ss_pred             HHHHHHHHCCeE-Eec---CCCCEEEEeC-CcccCHHHHHHHHHHHHHHh
Confidence            889999988843 432   2346899964 56678999999999999875

>PRK10534 L-threonine aldolase; Provisional

Probab=99.61  E-value=2.8e-14  Score=134.93  Aligned_cols=250  Identities=16%  Similarity=0.111  Sum_probs=146.5

Q ss_pred             EEEecCCcchhHHHH--HHhC-CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh---H
Q psy3048          32 VAYASDQSNSSVEKS--AIIG-DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE---L  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~--~~~~-g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~---I  105 (367)
                      .|+++...|.....+  +... +++++.++.++++.+|+++|++++.+...+...+.+|++++++  +|.+.|.++   |
T Consensus        75 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i  152 (333)
T PRK10534         75 EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQA  152 (333)
T ss_pred             eeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHH
Confidence            345666777544432  2333 3677888877789999999999986532111112467777544  599866655   5


Q ss_pred             HHHHhhcCcEEEEeccccccccc--ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALL--LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      .++|++||+++++|+||..+...  .......   ....|.++.+.+|.++.+  .|+.++.+++.++........+   
T Consensus       153 ~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~---~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~---  224 (333)
T PRK10534        153 WEFTRERNLALHVDGARIFNAVVAYGCELKEI---TQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMT---  224 (333)
T ss_pred             HHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHH---HhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHh---
Confidence            67899999999999997522110  0011110   112366667899987765  5644444554443221100000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .        ..+                                     ...++.+.+++..+  +...+.+++..+.++
T Consensus       225 ~--------~~~-------------------------------------~~~~~~~a~~~~~l--~~~~~~~~~~~~~r~  257 (333)
T PRK10534        225 G--------GGM-------------------------------------RQAGILAAAGLYAL--KHNVARLQEDHDNAA  257 (333)
T ss_pred             C--------Cch-------------------------------------hhHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence            0        000                                     00011112222222  111344445556678


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      ++.+.|+++ |+++.. +..+.+.+++++  ....++.+.|.++|+. +.+.     ..+|++. +...+++++++++++
T Consensus       258 ~l~~~L~~~-g~~~~~-~~~nfv~~~~~~--~~~~~~~~~l~~~gi~-v~~~-----~~~rl~~-~~r~t~e~~~~~~~~  326 (333)
T PRK10534        258 WLAEQLREA-GADVMR-QDTNMLFVRVGE--EQAAALGEYMRERNVL-INAS-----PIVRLVT-HLDVSREQLAEVVAH  326 (333)
T ss_pred             HHHHHHHhC-CCccCC-CCceEEEEECCc--hhHHHHHHHHHHcCee-ecCC-----ceEEEEE-EeCCCHHHHHHHHHH
Confidence            999999987 887654 467888887753  2356788888888854 4322     2579865 456789999999999


Q ss_pred             HHHHHH
Q psy3048         344 ISHQSS  349 (367)
Q Consensus       344 l~~~~~  349 (367)
                      |++++.
T Consensus       327 l~~~~~  332 (333)
T PRK10534        327 WRAFLA  332 (333)
T ss_pred             HHHHhc
Confidence            987653

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.61  E-value=1.6e-13  Score=132.99  Aligned_cols=219  Identities=13%  Similarity=0.039  Sum_probs=138.3

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++.+.      +.+|++..+.+++|.+.|    +++|.++|++||+++++|++|+++......+.....++ .
T Consensus       172 d~~~l~~~~~~~------~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~  244 (398)
T PRK03244        172 DVDALAAAVDDD------TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGV-T  244 (398)
T ss_pred             CHHHHHHhhcCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCC-C
Confidence            789999888533      357777888899999977    89999999999999999999976433221111112233 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  .|+++++..+|+++.+++ .. ..+.       ....     ...|                          
T Consensus       245 pDi~t~--sK~l~~G~~ig~~~~~~~-~~-~~~~-------~~~~-----~~t~--------------------------  282 (398)
T PRK03244        245 PDVVTL--AKGLGGGLPIGACLAFGP-AA-DLLT-------PGLH-----GSTF--------------------------  282 (398)
T ss_pred             CCEEEE--chhhhCCcccEEEEEcHH-HH-hhcc-------CCCC-----cCCC--------------------------
Confidence            477655  599997777898888543 22 2111       0000     0000                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCchHHHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDNDLTNQ  299 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~~  299 (367)
                              .+....+.+..++|+.+..   ++..++..++.+++++.|+++ ++.++.  .....++.+.++.  ....+
T Consensus       283 --------~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~--~~~~~  348 (398)
T PRK03244        283 --------GGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTA--PVAKA  348 (398)
T ss_pred             --------CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEec--cHHHH
Confidence                    0111122333344443333   245567788899999999885 332221  1233455566643  24568


Q ss_pred             HHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         300 LYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       300 l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +.+++.++|.+ +.+   .+..++|+++ +...+++||+++++.|+++++++.
T Consensus       349 ~~~~l~~~Gv~-~~~---~~~~~iR~~p-~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        349 VEAAAREAGFL-VNA---VAPDVIRLAP-PLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             HHHHHHHCCeE-Eee---cCCCEEEEEC-CCcCCHHHHHHHHHHHHHHHHhcc
Confidence            88999999854 433   2346899975 455789999999999999987643

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.61  E-value=1.5e-13  Score=129.90  Aligned_cols=243  Identities=12%  Similarity=0.059  Sum_probs=154.1

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~  107 (367)
                      -+|+. +.++......++..|++++.|+.++ ..+|++.+++   ..      +.+|++++++||||.+-+   +++|++
T Consensus        81 ~vv~~-~P~y~~y~~~~~~~G~~v~~vp~~~-~~~~~~~l~~---~~------~k~v~l~nP~NPTG~~~s~~~~~~l~~  149 (332)
T PRK06425         81 NIIIV-EPNFNEYKGYAFTHGIRISALPFNL-INNNPEILNN---YN------FDLIFIVSPDNPLGNLISRDSLLTISE  149 (332)
T ss_pred             cEEEe-CCChHHHHHHHHHcCCeEEEEeCCc-ccCcHHHHhh---cC------CCEEEEeCCCCCcCCccCHHHHHHHHH
Confidence            34444 6889999999999999999999864 4456555542   12      347778899999999855   677777


Q ss_pred             HHhhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|+++|+++++|++++-+.... +......... .--++..+..|.++ ....+|+++.. ++..+.......+      
T Consensus       150 ~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~~~l~GlRiGy~v~~-~~li~~l~~~~~~------  221 (332)
T PRK06425        150 ICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSY-GNVIIGRSLTKILGIPSLRIGYIATD-DYNMKISRKITEP------  221 (332)
T ss_pred             HHHHcCCEEEEecchhccccccchhHHHHhccC-CCEEEEeecHHhcCCchhhheeeecC-HHHHHHHHHcCCC------
Confidence            8899999999999987654321 1111111111 11356667899998 55778888874 3333221110000      


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKK  264 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~  264 (367)
                               +                               ..      .... ..++.....+. +++..+...+..++
T Consensus       222 ---------~-------------------------------~~------~~~~-~~~l~~~~~~~~~~~~~~~~~~~r~~  254 (332)
T PRK06425        222 ---------W-------------------------------SV------CDPA-IDFIRSIDLDYVAKHSLDIMENERSY  254 (332)
T ss_pred             ---------C-------------------------------cc------CHHH-HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                     0                               00      0011 11122211122 34556677788888


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.+.|+++ |+++..++..+.+.++++    ...++.+.|.++|+.......+.  +.+++|+++.    +.++.++|++
T Consensus       255 l~~~L~~~-g~~~~~~~~g~f~~~~~~----~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~  325 (332)
T PRK06425        255 LINNLEAM-GFRAAGDPSANFITFMIP----DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR----RRSFNIKLVN  325 (332)
T ss_pred             HHHHHHHC-CCEECCCCCceEEEEEcC----CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHH
Confidence            99999887 787765566666777664    25688889888885433333322  2469999764    5789999999


Q ss_pred             HHHHHH
Q psy3048         343 EISHQS  348 (367)
Q Consensus       343 ~l~~~~  348 (367)
                      +|++++
T Consensus       326 al~~~~  331 (332)
T PRK06425        326 ALRNFL  331 (332)
T ss_pred             HHHHHh
Confidence            998764

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.61  E-value=3.1e-13  Score=132.46  Aligned_cols=267  Identities=15%  Similarity=0.105  Sum_probs=165.0

Q ss_pred             eEEEecCCcchhHHHHHH-hCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          31 LVAYASDQSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~-~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      -.|+++...+..+...+. ..|++++.|+++  +++.+|++++++++++..+++..+.++++++|+||+|.+-+   +++
T Consensus       145 D~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~  224 (447)
T PLN02607        145 DALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLED  224 (447)
T ss_pred             CEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHH
Confidence            356667778888777666 478999999886  34679999999999876666656678888999999999855   788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh---hC-----C-CCCcceeeeccccccc-cCCcceeEEEecchhhhhhc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL---KR-----G-LEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTF  174 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~---~~-----~-~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~  174 (367)
                      |.++|++||+++++|++|+...+..+.+...   ..     + -+++ .++.+..|-++ .+..+|+++..++...... 
T Consensus       225 l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~-  302 (447)
T PLN02607        225 ILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERV-HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTA-  302 (447)
T ss_pred             HHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcE-EEEEcchhcCCCCcceEEEEEEcCHHHHHHH-
Confidence            8899999999999999997654422111111   10     1 1122 45678899987 4477888887543322211 


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hhHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YGLKGLQ  252 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~g~~  252 (367)
                      .....|-..                                               +. .....+...|..  +...-++
T Consensus       303 ~~~~~~~~~-----------------------------------------------s~-~~q~~~~~~L~d~~~~~~~l~  334 (447)
T PLN02607        303 RRMSSFTLV-----------------------------------------------SS-QTQHLLASMLSDEEFTENYIR  334 (447)
T ss_pred             HHHhhcCCC-----------------------------------------------CH-HHHHHHHHHhCCchhHHHHHH
Confidence            000000000                                               00 000111111111  1112344


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-----chHHHHHHHHHhcc-CcEEEEEeEE---CCeeEE
Q psy3048         253 AYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-----NDLTNQLYERLMSH-KQIYIIKASF---QGRPFL  323 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~l  323 (367)
                      +..++..+..+.+.+.|++. |+.+..+.....++++++..     .....++.++|.++ | +.+.|+..   ..++++
T Consensus       335 ~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~g-V~v~pG~~f~~~~~g~f  412 (447)
T PLN02607        335 TNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVK-LNISPGSSCHCSEPGWF  412 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCC-EEEcCccccCCCCCCEE
Confidence            55556667777788888876 77654443344555665421     01123677777764 6 45555433   236899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      |+++..  .++++++..+++|.+++++-
T Consensus       413 Ri~fa~--~~~~~l~~gl~Ri~~~l~~~  438 (447)
T PLN02607        413 RVCFAN--MSEDTLEVALKRIHRFMDRR  438 (447)
T ss_pred             EEEecc--CCHHHHHHHHHHHHHHHHHH
Confidence            997753  35889999999999987753

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.61  E-value=9.1e-14  Score=134.70  Aligned_cols=267  Identities=15%  Similarity=0.089  Sum_probs=162.1

Q ss_pred             ecCCcchhHHHHHHhCCcceEEEecCC----------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-cccC---
Q psy3048          35 ASDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAFD---  100 (367)
Q Consensus        35 ~s~~~H~s~~~~~~~~g~~v~~v~~~~----------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i~---  100 (367)
                      ++...+.+....+...|++++.++++.          .|.+|+++|++++.+.+.  ..+.+|+++.++|++ |.+.   
T Consensus        96 ~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~~~s~~  173 (431)
T cd00617          96 PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGGQPVSMA  173 (431)
T ss_pred             ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCCccCCHH
Confidence            344344455667788999999999862          255999999999986521  113478888888987 8875   


Q ss_pred             ChhhHHHHHhhcCcEEEEecccccccc-c---------Chhhhhhh-CCCCCcceeeeccccccccCCcceeEEEecchh
Q psy3048         101 NLEELGPICQEYNIWLHVDAAYAGSAL-L---------LPEYAHLK-RGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH  169 (367)
Q Consensus       101 dl~~I~~l~~~~gi~l~vD~a~~~~~~-~---------~~~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~  169 (367)
                      ++++|.++|++||++++.|+|+..... +         ........ .-.+.+|.++++++|-+.+|. .|+++.++++.
T Consensus       174 ~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l  252 (431)
T cd00617         174 NLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDEL  252 (431)
T ss_pred             HHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHH
Confidence            556889999999999999999764311 1         11111000 012467999999999988775 45666665545


Q ss_pred             hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHH-HHHHHHHHhhH
Q psy3048         170 LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL-KLWMTLRSYGL  248 (367)
Q Consensus       170 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~  248 (367)
                      +++..+..  +...+       ...|                                  ++...... ++..+|.....
T Consensus       253 ~~~~~~~~--~~~~~-------~~~~----------------------------------gG~~~r~~~A~A~gL~e~~~  289 (431)
T cd00617         253 YEEARQRV--VLYEG-------FVTY----------------------------------GGMAGRDMEALAQGLREAVE  289 (431)
T ss_pred             HHHHHHhc--cccCC-------cccc----------------------------------ccccHHHHHHHHHHHHhccc
Confidence            54432110  00000       0000                                  00001111 11113322111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------chHHHHHHHHHhccCcEE-EEEeE----
Q psy3048         249 KGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------NDLTNQLYERLMSHKQIY-IIKAS----  316 (367)
Q Consensus       249 ~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~l~~~L~~~g~~~-~~~~~----  316 (367)
                         .+..++..+.++++.+.|++. |+.+..|...+.+.+.+...       .-...+++..|.++..+. +.-+.    
T Consensus       290 ---~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~  365 (431)
T cd00617         290 ---EDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAG  365 (431)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecc
Confidence               234455566779999999987 88887777777777765421       012457776666555333 32111    


Q ss_pred             --EC-------CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 --FQ-------GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 --~~-------~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                        ..       ....+|+++...--|.+++|.++++|..+.++-
T Consensus       366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~  409 (431)
T cd00617         366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR  409 (431)
T ss_pred             cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence              01       136899988665567999999999999998863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.61  E-value=1.1e-13  Score=139.80  Aligned_cols=137  Identities=16%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CceEEEecCCcchhHHHH-HHhCCcceEEEecCC-----CCCcCHHH-----HHHHHHHH-hh--CCCcc-EEEEEecCC
Q psy3048          29 SRLVAYASDQSNSSVEKS-AIIGDVPVRQLRSDD-----NGVLRGDA-----LLTAVKED-LA--KGLIP-CCLVATLGT   93 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~-~~~~g~~v~~v~~~~-----~~~~d~~~-----L~~~l~~~-~~--~~~~~-~~vv~~~~~   93 (367)
                      +.-.|++++++|.|+..+ +.+.|+.++++.+..     -+.++++.     +++++++. .+  +...| .+++++++ 
T Consensus       213 ~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-  291 (720)
T PRK13578        213 PGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-  291 (720)
T ss_pred             CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-
Confidence            345788899999999996 788999999998752     24566555     89998876 21  12344 56777765 


Q ss_pred             CcccccCChhhHHHH-HhhcCcEEEEecccccccccChhhhhhh-CCC-CCcc----eeeeccccccccCCcceeEEEec
Q psy3048          94 TGTCAFDNLEELGPI-CQEYNIWLHVDAAYAGSALLLPEYAHLK-RGL-EYVD----SFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus        94 t~~G~i~dl~~I~~l-~~~~gi~l~vD~a~~~~~~~~~~~~~~~-~~~-~~~D----~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      |+.|.+.|+++|.++ ||.++ +++||+|||+..-+.+.++..- ..+ ..+|    +++-|.||.+.+-.+++++.+++
T Consensus       292 TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~  370 (720)
T PRK13578        292 TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKD  370 (720)
T ss_pred             CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCC
Confidence            889999999999998 78888 9999999999877665322110 111 2468    99999999999999999999865


Q ss_pred             c
Q psy3048         167 A  167 (367)
Q Consensus       167 ~  167 (367)
                      .
T Consensus       371 ~  371 (720)
T PRK13578        371 N  371 (720)
T ss_pred             c
Confidence            3

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.61  E-value=2.2e-13  Score=137.44  Aligned_cols=265  Identities=16%  Similarity=0.132  Sum_probs=168.8

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-----CCCcCH-----HHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-----NGVLRG-----DALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-----~~~~d~-----~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      +.-.|++++++|.|+..++.+.|+.++++++..     -+.+++     +.+++++++..+. .+|..++++++ |+.|.
T Consensus       234 ~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi  311 (713)
T PRK15399        234 AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGL  311 (713)
T ss_pred             CCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCce
Confidence            445788899999999999999999999998742     245666     9999999876532 45667777776 88999


Q ss_pred             cCChhhHHHHHhhcCcEE-EEecccccccccChhhhh--hhCCCCCccee---eeccccccccCCcceeEEEecchhhhh
Q psy3048          99 FDNLEELGPICQEYNIWL-HVDAAYAGSALLLPEYAH--LKRGLEYVDSF---AFNAHKWLLTNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l-~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~---~~~~hK~l~~p~g~g~l~~~~~~~~~~  172 (367)
                      +.|+++|.++|   |+.+ |||+|||+...+.+.++.  .+.+...+|..   +-|.||.+.+-.+++++.++..-.. .
T Consensus       312 ~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~-~  387 (713)
T PRK15399        312 LYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDE-E  387 (713)
T ss_pred             eeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCH-H
Confidence            99999999999   6766 799999998766654331  12121134666   9999999999999999999653111 1


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHH
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ  252 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  252 (367)
                      .+  ...|....     +++++|.++                                      .++-.+.+.+....-+
T Consensus       388 ~~--n~a~~m~~-----STSPsY~Lm--------------------------------------ASLD~a~~~m~~~~G~  422 (713)
T PRK15399        388 TF--NEAFMMHT-----STSPSYPIV--------------------------------------ASVETAAAMLRGNPGK  422 (713)
T ss_pred             HH--HHHHHHHc-----CCCcHHHHH--------------------------------------HHHHHHHHHHHhhhhH
Confidence            11  11111111     234444111                                      1222222233221235


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC------eEEeCCC-----------------------------CceeEEEEEcCC----
Q psy3048         253 AYLRKHISLAKKFADLVEKDDR------FELVCPP-----------------------------SMGLVCFRLKGD----  293 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g------~~~~~~~-----------------------------~~~~v~f~~~~~----  293 (367)
                      +.+++..+++..++++|.++.+      |+++.++                             ...-+++.+++.    
T Consensus       423 ~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g  502 (713)
T PRK15399        423 RLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMDEQG  502 (713)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEecCccccc
Confidence            5677888888889998887766      5665421                             112233333321    


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                           ......+.+.|.+.|+ .+..+.   ...+=+ +.++..+++++++++++|.++-+
T Consensus       503 ~~~~~Gi~g~~l~~~L~e~gI-~~E~~d---~~~vL~-l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        503 NMSEEGIPAALVAKFLDERGI-VVEKTG---PYNLLF-LFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             ccccCCCCHHHHHHHHHHcCC-EEEecC---CCeEEE-EeCCCCCHHHHHHHHHHHHHHHH
Confidence                 1223467777777774 443322   222323 34678899999999999998854

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.61  E-value=3.1e-13  Score=130.90  Aligned_cols=265  Identities=12%  Similarity=0.089  Sum_probs=156.5

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDA   69 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~   69 (367)
                      .||++||.+........ +       .++.+|..+..-|-....++...+..            +..++.+     |+++
T Consensus       112 ~Alk~a~~~~~~~~g~~-~-------~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~  178 (396)
T PRK04073        112 TAIKAARRWAYDVKGVE-P-------NKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEA  178 (396)
T ss_pred             HHHHHHHHHhhhccCCC-C-------CCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHH
Confidence            47888888754331100 0       12345555566776666665544321            2333332     7899


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF  145 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~  145 (367)
                      |++++++.+      .+|+++.+++++|.+.|    +++|.++|++||+++++|++|.+.......+.....++ ..|++
T Consensus       179 l~~~i~~~~------~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~pdi~  251 (396)
T PRK04073        179 LKAAITPNT------AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV-TPDMY  251 (396)
T ss_pred             HHHhcccCe------EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC-CCCEE
Confidence            999886544      47888888899999865    89999999999999999999986433221111111222 35777


Q ss_pred             eeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc
Q psy3048         146 AFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ  224 (367)
Q Consensus       146 ~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (367)
                      ++  .|.++.+ ..+|+++.++ +... .+.       ....     ...|                             
T Consensus       252 ~~--sK~lg~gg~~ig~~~~~~-~i~~-~~~-------~~~~-----~~t~-----------------------------  286 (396)
T PRK04073        252 IL--GKALGGGVFPISCVAANR-DILG-VFT-------PGSH-----GSTF-----------------------------  286 (396)
T ss_pred             Ee--cccccCCCCcceEEEEcH-HHHh-hhc-------CCCC-----CCCC-----------------------------
Confidence            65  5888765 4577777643 2222 111       0000     0000                             


Q ss_pred             cccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCchHHHHHHH
Q psy3048         225 HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDNDLTNQLYE  302 (367)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~~~~~~l~~  302 (367)
                           .+......+..++|+.+..+   .+.++..++.+++.+.|+++ +...+.  ++...++.+.+..   ...++.+
T Consensus       287 -----~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~---~~~~~~~  354 (396)
T PRK04073        287 -----GGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNE---PARPYCE  354 (396)
T ss_pred             -----CCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhh-cCCcccceecceEEEEEEecc---hHHHHHH
Confidence                 01111223333445443333   34466778899999999876 222122  1233445555542   2567888


Q ss_pred             HHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         303 RLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       303 ~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      +|.++|.+ +.+   .+..++|+++ +...+++|+++++++|++++
T Consensus       355 ~l~~~Gv~-~~~---~~~~~iRi~p-~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        355 ALKEEGLL-CKE---THETVIRFAP-PLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             HHHHCCeE-Eec---CCCCEEEEEC-CcccCHHHHHHHHHHHHHHh
Confidence            89888854 432   2346899975 56778999999999998864

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.60  E-value=2.5e-13  Score=131.82  Aligned_cols=266  Identities=14%  Similarity=0.098  Sum_probs=163.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhC-CCccEEEEEecCCCccccc---CChh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAK-GLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~-~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      .-.|++.+.++..+...+...|++++.|+.+  +++.+|+++|.+.+++..++ .....++++++|+||||.+   +.++
T Consensus       119 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~  198 (403)
T PRK08636        119 GDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYE  198 (403)
T ss_pred             CCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHH
Confidence            3466677888888888889999999999874  45789998775555443322 1224688888899999998   4568


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC---Ccceeeeccccccc-cCCcceeEEEecchhhhhhccCCcc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~---~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +|+++|++|++++++|.+|+-..+....... +..+.   ...+.+.+..|.++ ....+|+++.. ++.+..... ...
T Consensus       199 ~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~-~~li~~~~~-~~~  275 (403)
T PRK08636        199 RLVALAKKERFYIISDIAYADITFDGYKTPS-ILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGN-KKLVGALKK-IKS  275 (403)
T ss_pred             HHHHHHHHcCcEEEEeccchhhccCCCCCCC-hhcCCCccccEEEEEecccccCCccceeeeeeCC-HHHHHHHHH-HHH
Confidence            8888999999999999999765432111110 11111   11244678999995 55788887753 332221100 000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      +....                                              ........+..+++. ....+++..+...
T Consensus       276 ~~~~~----------------------------------------------~~~~~q~~~~~~~~~-~~~~~~~~~~~~~  308 (403)
T PRK08636        276 WLDYG----------------------------------------------MFTPIQVAATIALDG-DQSCVEEIRETYR  308 (403)
T ss_pred             Hhccc----------------------------------------------CChHHHHHHHHHHhC-cHHHHHHHHHHHH
Confidence            00000                                              000001111122221 2344666666777


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC--chHHHHHHHHHh-ccCcEEEEEeE-E--CCeeEEEEEecCCCCC
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--NDLTNQLYERLM-SHKQIYIIKAS-F--QGRPFLRFVVTSPETN  333 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--~~~~~~l~~~L~-~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~  333 (367)
                      +..+++.+.|++. |+.+..+.....+++++++.  .....++.+++. +.| +.+.++. +  .+..++||++.   .+
T Consensus       309 ~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~g-V~v~pg~~f~~~~~~~iRi~~~---~~  383 (403)
T PRK08636        309 KRRDVLIESFANA-GWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAK-VAVSPGIGFGEYGDEYVRIALI---EN  383 (403)
T ss_pred             HHHHHHHHHHHHC-CCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCC-EEEecchhhCcCCCCeEEEEec---CC
Confidence            8888888888886 67665555556667776531  112457777755 456 4454442 2  23579999874   36


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQSSE  350 (367)
Q Consensus       334 ~edid~li~~l~~~~~~  350 (367)
                      +++++..++.|++++++
T Consensus       384 ~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        384 ENRIRQAARNIKKFLKE  400 (403)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            89999999999988875

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.60  E-value=1.5e-13  Score=130.99  Aligned_cols=262  Identities=13%  Similarity=0.117  Sum_probs=139.3

Q ss_pred             ceEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++..|......++.    .|++++.+++++++..|        ++++      ..|++++|++ .|.++|+++|
T Consensus       154 ~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~~~~------a~v~vq~Pn~-~G~~ed~~~i  218 (429)
T PF02347_consen  154 RNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------DDDT------AAVMVQNPNT-FGVFEDIKEI  218 (429)
T ss_dssp             --EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------STTE------EEEEEESS-T-TSB--THHHH
T ss_pred             CcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------ccCe------EEEEeecCCC-CceEeeHHHH
Confidence            44688899999998876553    68899999988777777        3333      5788888855 8999999999


Q ss_pred             HHHHhhcCcEEEEecccccccc-cChhhhhhhCCCCCcceeeeccccccccC-----CcceeEEEecchhhhhhccCCcc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTN-----HDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~-~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      ++++|++|..+++ ++--.... ..++..   .|   +|++ ++.||-|+.|     |++|++.+++.  +.+.+  ..+
T Consensus       219 ~~~~h~~gal~~~-~ad~~aL~~l~~Pge---~G---ADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~--l~r~l--PGR  286 (429)
T PF02347_consen  219 ADIAHAAGALVIV-GADPNALGGLKSPGE---YG---ADIV-VGEHQTFGIPMGFGGPGAGFFAVRED--LVRQL--PGR  286 (429)
T ss_dssp             HHHHHHTT-EEEE-CGGCCGCCTC--GGG---GT----SEE-EECCTTTT---CCC-S--EEEEE-GG--GGGGS---S-
T ss_pred             HHHHHHcCCEEEE-ecCHHHHhCcCChhh---cC---ccEE-eeCCCCCcccCCCCCCCeeeEEEhhh--hhhhC--CCc
Confidence            9999999999988 65432211 112212   13   4998 5558887766     45677777654  32221  112


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcc---cccccccccc-ccHHHHHHHHHHhhHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI---QHWQTPLSRR-FRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                      .++.....  .....|.+.             +....    +++   +.....|++. ..++..+..+..+|.+|+.++.
T Consensus       287 iVG~t~D~--~G~~~~~lt-------------LqtRE----QHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA  347 (429)
T PF02347_consen  287 IVGQTKDA--DGKRAFVLT-------------LQTRE----QHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIA  347 (429)
T ss_dssp             EEEEEEBC--CCSCCEEEE--------------GGGT----CHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccc--cccceeeec-------------ccccc----ccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            22111000  112222111             00000    011   1112223332 2345666778889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      ++...+++|+.++|+++.++. +..+.+......... .....++.++.+..| +..  .. .....+-+++ .-.++++
T Consensus       348 ~~~~~~A~yl~~~L~~~~~~~-~~~~~f~e~v~~~~~-~~~~~~l~~~~~~~g-l~~--~~-~~~~~~li~~-TE~~t~e  420 (429)
T PF02347_consen  348 ERIHLNAHYLAERLKKIYGLP-FDNPFFFEFVVVFSK-DKEVEELLKRGIEGG-LNL--RY-PDDGALLICV-TETRTKE  420 (429)
T ss_dssp             HHHHHHHHHHHHHHCCTTBEC-SSSSSBSSEEEEESS--HHHHHHHHTT-----EEE--GG-G-SSEEEEE---TT--HH
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-cCCCCceeeeeecCC-cHHHHHHHHHHHhcC-CCc--cc-cCCCeEEEEc-cCCCCHH
Confidence            999999999999999984443 333344433333333 223334666666666 222  11 1223666766 4566799


Q ss_pred             HHHHHHHHH
Q psy3048         336 DVAFAWNEI  344 (367)
Q Consensus       336 did~li~~l  344 (367)
                      |||+++++|
T Consensus       421 did~lv~~f  429 (429)
T PF02347_consen  421 DIDRLVEAF  429 (429)
T ss_dssp             HHHHHHH--
T ss_pred             HHHHHHhcC
Confidence            999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK07683 aminotransferase A; Validated

Probab=99.59  E-value=2.7e-13  Score=130.92  Aligned_cols=260  Identities=10%  Similarity=0.051  Sum_probs=159.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .-.|+++...+..+...++..|++++.++.+ +++.+|++++++.+.+.+      .++++++++|+||.+-   ++++|
T Consensus       113 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~i~i~~p~NPtG~~~s~~~~~~l  186 (387)
T PRK07683        113 GTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKT------RCVVLPYPSNPTGVTLSKEELQDI  186 (387)
T ss_pred             CCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcCc------eEEEEeCCCCCCCcCCCHHHHHHH
Confidence            3457777778777888888899999999986 457789999999886544      4778899999999984   58999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++|+++|+++++|++|+...+..+... ....+...-.++..+..|.++.| ..+|+++... ...+..... ..+...
T Consensus       187 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~-~l~~~~~~~-~~~~~~  264 (387)
T PRK07683        187 ADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS-YLAKHILKV-HQYNVT  264 (387)
T ss_pred             HHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH-HHHHHHHHH-HHhccC
Confidence            9999999999999999986543221100 00111111246778889999844 5678877643 222221100 011000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                    +...+....+...+.. +...+++..++..+..+
T Consensus       265 ----------------------------------------------~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~  297 (387)
T PRK07683        265 ----------------------------------------------CASSISQYAALEALTA-GKDDAKMMRHQYKKRRD  297 (387)
T ss_pred             ----------------------------------------------CCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHH
Confidence                                                          0000111111222221 23345566667778888


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEE-EEcCCchHHHHHHHHH-hccCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCF-RLKGDNDLTNQLYERL-MSHKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~~~~~~l~~~L-~~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|++. |+.+. ++..+.+.+ .++.......++.+.+ .++|+ .+.++. +  .+..++||+++.   +++++.
T Consensus       298 ~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI-~v~pg~~f~~~~~~~~Ri~~~~---~~~~~~  371 (387)
T PRK07683        298 YVYNRLISM-GLDVE-KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGL-AVVPGSAFSEYGEGYVRLSYAY---SIETLK  371 (387)
T ss_pred             HHHHHHHHc-CCccc-CCCeeEEEEEecccCCCCHHHHHHHHHHhCCE-EEcCchhhCCCCCCeEEEEecC---CHHHHH
Confidence            888888876 66644 343343333 3332112244566554 55664 444432 2  235799997753   588899


Q ss_pred             HHHHHHHHHHHH
Q psy3048         339 FAWNEISHQSSE  350 (367)
Q Consensus       339 ~li~~l~~~~~~  350 (367)
                      ..++.|.+++++
T Consensus       372 ~al~~l~~~l~~  383 (387)
T PRK07683        372 EGLDRLEAFLQQ  383 (387)
T ss_pred             HHHHHHHHHHHh
Confidence            999988887653

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.59  E-value=1.3e-13  Score=133.45  Aligned_cols=253  Identities=12%  Similarity=0.054  Sum_probs=155.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++.+..+..+...++..|++++.||+++  ++.+|+++|++++.+.+      .+++++.++||||.+-   .+++
T Consensus       117 gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~------k~i~l~nP~NPTG~~~s~~~~~~  190 (396)
T PRK09147        117 GPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART------QLLFVCSPGNPTGAVLPLDDWKK  190 (396)
T ss_pred             CCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhcc------EEEEEcCCCCCcCccCCHHHHHH
Confidence            34567778888888888889999999999863  46899999998886544      4777889999999984   7788


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhhh--hC--CCCCc--ceeeecccccc-ccCCcceeEEEecchhhhhhcc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAHL--KR--GLEYV--DSFAFNAHKWL-LTNHDCSAMWVKNANHLTNTFF  175 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~--~~--~~~~~--D~~~~~~hK~l-~~p~g~g~l~~~~~~~~~~~~~  175 (367)
                      |+++|++||+++++|++|+-..+...  .....  ..  +....  -++..+..|.+ .....+|+++.. +..++....
T Consensus       191 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~-~~l~~~~~~  269 (396)
T PRK09147        191 LFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGD-AALLKKFLL  269 (396)
T ss_pred             HHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCC-HHHHHHHHH
Confidence            88899999999999999976544221  00000  00  00001  26778889965 444778887763 232322110


Q ss_pred             CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHH
Q psy3048         176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAY  254 (367)
Q Consensus       176 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~  254 (367)
                       ...+...                                           .      ...+...+++..+ ..+.+.+.
T Consensus       270 -~~~~~~~-------------------------------------------~------~~~~~q~a~~~~~~~~~~~~~~  299 (396)
T PRK09147        270 -YRTYHGC-------------------------------------------A------MPPAVQAASIAAWNDEAHVREN  299 (396)
T ss_pred             -Hhhhccc-------------------------------------------C------CCHHHHHHHHHHhcchhHHHHH
Confidence             0000000                                           0      0011112212222 22345555


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-E--------CCeeEEE
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-F--------QGRPFLR  324 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~--------~~~~~lR  324 (367)
                      .+..++..+.+.+.|++.  +.+..|+....++++++.   ...++.++|. +.|+ .+.++. +        .+..++|
T Consensus       300 ~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gv-~v~pg~~f~~~~~~~~~~~~~iR  373 (396)
T PRK09147        300 RALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPG---DDTEFARRLYADYNV-TVLPGSYLAREAHGVNPGAGRVR  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCC---CHHHHHHHHHHhCCE-EEeCCccccccccCCCCCCCeEE
Confidence            666667777777777663  343344455566666652   2467777776 4564 444432 2        1256999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~  348 (367)
                      ++++.   ++++++.++++|++++
T Consensus       374 i~~~~---~~~~l~~~l~rl~~~~  394 (396)
T PRK09147        374 IALVA---PLAECVEAAERIVDFC  394 (396)
T ss_pred             EEecC---CHHHHHHHHHHHHHHh
Confidence            98753   4778888888888765

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.59  E-value=1.4e-13  Score=132.90  Aligned_cols=255  Identities=13%  Similarity=0.048  Sum_probs=159.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++.+.++......++..|++++.++.++  ++.+|++++++.+.+.+      .+++++.++||||.+   +.+++|
T Consensus       117 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~p~NPTG~~~s~~~~~~l  190 (388)
T PRK07366        117 DFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQA------RLMVLSYPHNPTTAIAPLSFFQEA  190 (388)
T ss_pred             CEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccc------eEEEEeCCCCCCCccCCHHHHHHH
Confidence            3566677888888888899999999999863  36788899988775443      477888899999998   456677


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCC--C-cceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE--Y-VDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~--~-~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      +++|++||+++++|++|+-..+........+....  . .-+++.+..|.++ ....+|+++.. ++.+....... ...
T Consensus       191 ~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~-~~li~~l~~~~-~~~  268 (388)
T PRK07366        191 VAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN-AQLIQALRQVK-AVV  268 (388)
T ss_pred             HHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCC-HHHHHHHHHHH-hhc
Confidence            88999999999999999765432111000011111  1 1256678999995 55778888753 33332211000 000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAYLRKHI  259 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~~~~~~  259 (367)
                      .            +                               +   .  . ...+.+++..+  ..+.+++..++..
T Consensus       269 ~------------~-------------------------------~---~--~-~~~~~~a~~~l~~~~~~l~~~~~~~~  299 (388)
T PRK07366        269 D------------F-------------------------------N---Q--Y-RGILNGAIAALTGPQATVQQTVQIFR  299 (388)
T ss_pred             c------------c-------------------------------C---C--C-HHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            0            0                               0   0  0 00111122222  2345677777788


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHh-ccCcEEEEEeE-EC--CeeEEEEEecCCCCCH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLM-SHKQIYIIKAS-FQ--GRPFLRFVVTSPETNQ  334 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~-~~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~  334 (367)
                      +..+++.+.|+++ |+....|.....+++++++. .....++.+.+. +.|+ .+.++. +.  +.+++|++++.   ++
T Consensus       300 ~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv-~v~pg~~f~~~~~~~iRi~~~~---~~  374 (388)
T PRK07366        300 QRRDAFINALHQI-GWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGV-AASPGSGFGKSGEGYVRFALVH---DP  374 (388)
T ss_pred             HHHHHHHHHHHHC-CCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCE-EEeCchHhCcCCCCeEEEEecC---CH
Confidence            8888899999887 67654455555666666531 112457777775 4564 444432 22  24699998753   58


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQ  347 (367)
Q Consensus       335 edid~li~~l~~~  347 (367)
                      ++++..++.|.++
T Consensus       375 ~~l~~~l~rl~~~  387 (388)
T PRK07366        375 DILEEAVERIAAF  387 (388)
T ss_pred             HHHHHHHHHHHHh
Confidence            8899999888765

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.59  E-value=1.8e-12  Score=125.80  Aligned_cols=253  Identities=13%  Similarity=0.081  Sum_probs=149.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.+|..+...|-+...++...+..            +..++.     .|+++|+++++..     .+.+|++..+.+++|
T Consensus       123 ~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-----~~~~v~~ep~~~~~G  192 (400)
T PTZ00125        123 AKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDP-----NVAAFIVEPIQGEAG  192 (400)
T ss_pred             CeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCC-----CeEEEEEcCccCCCC
Confidence            456666777777766665543321            122222     3899999998611     135777777888999


Q ss_pred             ccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhh
Q psy3048          98 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTN  172 (367)
Q Consensus        98 ~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~  172 (367)
                      .+.|    +++|.++|++||+++++|++|++.......+.....++ ..|+++++  |++.++. .+|+++.++ +....
T Consensus       193 ~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~s--K~l~~g~~~ig~v~~~~-~~~~~  268 (400)
T PTZ00125        193 VIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLLG--KALSGGLYPISAVLAND-DVMLV  268 (400)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-CCCEEEEc--ccccCCCcCcEEEEEcH-HHHhh
Confidence            9887    99999999999999999999975332211111111233 34777764  9998764 788888754 22221


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHH
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ  252 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  252 (367)
                       +..   .. .. .       .+                                  .+..+.+....++++.+..+++ 
T Consensus       269 -~~~---~~-~~-~-------t~----------------------------------~~~~~~~~aa~~~l~~i~~~~~-  300 (400)
T PTZ00125        269 -IKP---GE-HG-S-------TY----------------------------------GGNPLACAVAVEALEVLKEEKL-  300 (400)
T ss_pred             -ccC---CC-CC-C-------CC----------------------------------CcCHHHHHHHHHHHHHHHhcCH-
Confidence             100   00 00 0       00                                  0111122333444555443343 


Q ss_pred             HHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcC-CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEe
Q psy3048         253 AYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKG-DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVV  327 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~-~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~  327 (367)
                        .++..++.+++++.|+++    +.+... .+...++.+.++. ......++.+.|.++|+ ++.+.   +..++|+++
T Consensus       301 --~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv-~v~~~---~~~~lRi~~  373 (400)
T PTZ00125        301 --AENAQRLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSDGVNAWDLCLKLKENGL-LAKPT---HDNIIRFAP  373 (400)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCcchHHHHHHHHHHHCCe-EEeec---CCCEEEEEC
Confidence              345556677777777553    222212 1223344444542 12345678888988884 44432   446899965


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         328 TSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       328 ~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       +...+++|++++++.|+++++++.
T Consensus       374 -~~~~~~~~i~~~l~~l~~~l~~~~  397 (400)
T PTZ00125        374 -PLVITKEQLDQALEIIKKVLKSFD  397 (400)
T ss_pred             -CccCCHHHHHHHHHHHHHHHHHHh
Confidence             456789999999999999988764

>PRK06460 hypothetical protein; Provisional

Probab=99.58  E-value=2.8e-13  Score=130.02  Aligned_cols=234  Identities=18%  Similarity=0.159  Sum_probs=146.9

Q ss_pred             hHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecc
Q psy3048          42 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA  121 (367)
Q Consensus        42 s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a  121 (367)
                      .+...++..|++++.++.+     +.+.+++.+++.+      .+|++++++|++|.+.|+++|.++||++|+++++|++
T Consensus       100 ~~~~~~~~~G~~v~~~~~~-----~~~~l~~~~~~~t------klV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea  168 (376)
T PRK06460        100 FFTDYLKNWGVNVDASNPG-----SDNIIEKAKSKRY------DVVFVENITNPLLRVVDITELSKVCKENGSILIVDAT  168 (376)
T ss_pred             HHHHHHHhhCcEEEEECCC-----CHHHHHHhcCCCc------eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence            3456677789999888764     2334444433333      5888999999999999999999999999999999999


Q ss_pred             cccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhh
Q psy3048         122 YAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMN  199 (367)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~  199 (367)
                      |+.+.. ....   ..   .+|+++.+.+|+++++.+  .|+++. +++..+........                    
T Consensus       169 ~~~~~~-~~~l---~~---~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~~~l~~~~~~--------------------  220 (376)
T PRK06460        169 FSTPIN-QKPL---EL---GADIVVHSASKFLAGHNDVIAGLAAG-YGKLLNVIDQMRRT--------------------  220 (376)
T ss_pred             cCcccc-CChh---hc---CCCEEEeecceeccCCCCceEEEEec-CHHHHHHHHHHHHh--------------------
Confidence            975421 1111   11   359999999999875533  555443 44333221100000                    


Q ss_pred             hhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-Ee
Q psy3048         200 WLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFE-LV  278 (367)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~-~~  278 (367)
                                                +...    ..+...+.+++  +.+.++.++++..++++++.+.|+++|.+. +.
T Consensus       221 --------------------------~g~~----~~~~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~  268 (376)
T PRK06460        221 --------------------------LGTS----LDPHAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVY  268 (376)
T ss_pred             --------------------------cCCC----CCHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEE
Confidence                                      0000    01123333333  456778889999999999999999998874 44


Q ss_pred             CC-----C-----------CceeEEEEEcCCchHHHHHHHHHhc--c----C---cEEEEEeE---E-----------CC
Q psy3048         279 CP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMS--H----K---QIYIIKAS---F-----------QG  319 (367)
Q Consensus       279 ~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~--~----g---~~~~~~~~---~-----------~~  319 (367)
                      .|     |           ..++++|.+.+.......+.++|.-  .    |   .....|..   .           -.
T Consensus       269 yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~  348 (376)
T PRK06460        269 YPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGIT  348 (376)
T ss_pred             CCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCC
Confidence            33     1           2578899987533334566666531  1    1   01111110   0           02


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .+.+|+|+.     -||.+.+++.|++.++.+
T Consensus       349 ~~liR~svG-----lE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        349 DSLLRLSVG-----IEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             CCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence            468999774     368889999999887653

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.58  E-value=6.1e-13  Score=127.41  Aligned_cols=249  Identities=9%  Similarity=0.002  Sum_probs=157.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..+..+...++..|++++.++.+   +++.+|++++++++. +.+      .+|++++++|+||.+-|.+++.
T Consensus       102 ~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~------~lv~l~~p~NPTG~~~~~~~~~  175 (364)
T PRK04781        102 DAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNA------KLVFLCSPSNPAGSAIALDQIE  175 (364)
T ss_pred             CeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCC------eEEEEcCCCCCCCCCcCHHHHH
Confidence            456667777666666678899999999973   235689999866543 333      4777889999999999988888


Q ss_pred             HHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++++.  +++++++|++|+-+.... ..........+ -++..+..|.++ ....+|+++.. ++.+.........+   
T Consensus       176 ~l~~~~~~~~~iI~Deay~~f~~~~-~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvGy~v~~-~~l~~~l~~~~~~~---  249 (364)
T PRK04781        176 RALQALQGKALVVVDEAYGEFSDVP-SAVGLLARYDN-LAVLRTLSKAHALAAARIGSLIAN-AELIAVLRRCQAPY---  249 (364)
T ss_pred             HHHHhCCCCcEEEEeCcchhhcCCc-chHHHHhhCCC-EEEEecChhhcccccceeeeeeCC-HHHHHHHHhccCCC---
Confidence            88764  489999999997544211 11111111111 356677899987 55778887763 33332211111000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---HHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---LKGLQAYLRKHIS  260 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~~~~~~~  260 (367)
                                                                 ..      ..+...++...+.   .+...+.+++..+
T Consensus       250 -------------------------------------------~~------~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  280 (364)
T PRK04781        250 -------------------------------------------PV------PTPCAALAEQALSAPALAVTARRVAEVRA  280 (364)
T ss_pred             -------------------------------------------CC------CHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                                                       00      0111222222221   1234555566777


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~  339 (367)
                      ..+++.+.|++++++....|+..+.+.++++.    ..++.+.|.++|+....+..+ ....++||++.    +.++.++
T Consensus       281 ~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~----~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~  352 (364)
T PRK04781        281 ERERLHAALAQLPGVRRVYPSQGNFLLVRFDD----AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG----TPEQNDR  352 (364)
T ss_pred             HHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC----HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC----CHHHHHH
Confidence            78889999988878754456666667776642    467888888888544333222 22569999764    5889999


Q ss_pred             HHHHHHHHH
Q psy3048         340 AWNEISHQS  348 (367)
Q Consensus       340 li~~l~~~~  348 (367)
                      ++++|+++.
T Consensus       353 l~~al~~~~  361 (364)
T PRK04781        353 VLAALQRTQ  361 (364)
T ss_pred             HHHHHHHHH
Confidence            999998864

>PRK07505 hypothetical protein; Provisional

Probab=99.58  E-value=6.3e-13  Score=129.00  Aligned_cols=254  Identities=12%  Similarity=0.067  Sum_probs=145.3

Q ss_pred             eEEEecCCcchhHHH--HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSVEK--SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~--~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .+|+.+...|.|+..  .....+.+++.++.+     |+++|++++++.+      .+++++.+.+++|.+.|+++|.++
T Consensus       136 ~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~~------~~~vl~~p~~~~G~~~~~~~i~~l  204 (402)
T PRK07505        136 PHMVFDKNAHASLNILKGICADETEVETIDHN-----DLDALEDICKTNK------TVAYVADGVYSMGGIAPVKELLRL  204 (402)
T ss_pred             CEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcCC------CEEEEEecccccCCcCCHHHHHHH
Confidence            366777789988743  222245677777763     8999999886543      377788889999999999999999


Q ss_pred             HhhcCcEEEEecccccccc--cChhhhhhhCC--CCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         109 CQEYNIWLHVDAAYAGSAL--LLPEYAHLKRG--LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~--~~~~~~~~~~~--~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |++||+++++|++|+.+.+  ....+.....+  .....+++.+..|.++.+ | |++.+.+++..........+|.+.+
T Consensus       205 ~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g~~~~~~~~~~~~~~~~~~~~t~~~  282 (402)
T PRK07505        205 QEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-GVIMLGDAEQIELILRYAGPLAFSQ  282 (402)
T ss_pred             HHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-eEEEeCCHHHHHHHHHhCCCceeCC
Confidence            9999999999999853221  11111111112  122246666889988754 3 5655444433322111111111110


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      .       +                                      ..+...++.+++..+..+.+.+..++..+..++
T Consensus       283 ~-------~--------------------------------------~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~  317 (402)
T PRK07505        283 S-------L--------------------------------------NVAALGAILASAEIHLSEELDQLQQKLQNNIAL  317 (402)
T ss_pred             C-------C--------------------------------------CHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            0       0                                      001122333444433444444444445444444


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.+.+...     ...+.+.+..+.+.. .....++.++|.++|++ +.+...    .+..++|+++ ....+++|++++
T Consensus       318 ~~~~~~~~-----~~g~~~~i~~~~~~~-~~~~~~~~~~l~~~Gi~-v~~~~~p~~~~~~~~lRi~~-~~~~t~eei~~~  389 (402)
T PRK07505        318 FDSLIPTE-----QSGSFLPIRLIYIGD-EDTAIKAAKQLLDRGFY-TSPVFFPVVAKGRAGLRIMF-RASHTNDEIKRL  389 (402)
T ss_pred             HHHHHHhc-----CCCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCe-EeeecCCCCCCCCceEEEec-CccCCHHHHHHH
Confidence            43332111     111223333333322 22456899999999854 333221    1335899965 566789999999


Q ss_pred             HHHHHHHHHH
Q psy3048         341 WNEISHQSSE  350 (367)
Q Consensus       341 i~~l~~~~~~  350 (367)
                      +++|++++++
T Consensus       390 ~~~l~~~l~~  399 (402)
T PRK07505        390 CSLLKEILDE  399 (402)
T ss_pred             HHHHHHHHHh
Confidence            9999998654

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.58  E-value=5.4e-13  Score=127.95  Aligned_cols=248  Identities=14%  Similarity=0.015  Sum_probs=157.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++...++......++..|.+++.++.++++.+|++++++++++..     +.+++++.++|++|.+.+.+++.++|+
T Consensus       113 d~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~  187 (368)
T PRK03317        113 RTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILD  187 (368)
T ss_pred             CEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            346667788888888888889998888876778999999999987432     236778899999999999999999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcc-eeeecccccccc-CCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD-SFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D-~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      .+++++++|++|+.+............+. .-+ +++.+..|.++. ...+|+++.. ++...........         
T Consensus       188 ~~~~~lI~DE~y~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~g~~GlRiG~~~~~-~~~~~~l~~~~~~---------  256 (368)
T PRK03317        188 AAPGIVVVDEAYAEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAA-PAVVDALRLVRLP---------  256 (368)
T ss_pred             HCCceEEEeCCchhhcccCCcCHHHHHHh-CCCEEEEEechhhhccchhhhhhhhCC-HHHHHHHHhcCCC---------
Confidence            99999999999986532211000001011 113 455688999974 4567887763 3333221100000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                            |                               .   ...+....+..+++.  .+.+.+..++..+..+++.+.
T Consensus       257 ------~-------------------------------~---~s~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~  294 (368)
T PRK03317        257 ------Y-------------------------------H---LSAVTQAAARAALRH--ADELLASVAALRAERDRVVAW  294 (368)
T ss_pred             ------C-------------------------------C---CCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHH
Confidence                  0                               0   000111122223322  233444556667777888888


Q ss_pred             hcCCCCeEEeCCCCceeEEE-EEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCF-RLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f-~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      |+++ |+.+.. +..+.+.+ .+.    ...++.+.|.++|+ .+.+.  ..+.++|++++    +.+++++++++|+++
T Consensus       295 L~~~-g~~~~~-~~~~~~~~~~~~----~~~~~~~~l~~~Gv-~v~~~--~~~~~iRi~~~----~~~~~~~~~~~l~~~  361 (368)
T PRK03317        295 LREL-GLRVAP-SDANFVLFGRFA----DRHAVWQGLLDRGV-LIRDV--GIPGWLRVTIG----TPEENDAFLAALAEV  361 (368)
T ss_pred             HHHC-CCEeCC-CCCcEEEEeccC----CHHHHHHHHHHCCE-EEEeC--CCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence            8886 776543 44444444 222    25678888888884 44432  23469999753    578999999999988


Q ss_pred             HH
Q psy3048         348 SS  349 (367)
Q Consensus       348 ~~  349 (367)
                      ++
T Consensus       362 ~~  363 (368)
T PRK03317        362 LA  363 (368)
T ss_pred             HH
Confidence            65

>KOG1357|consensus

Probab=99.57  E-value=1.1e-13  Score=128.86  Aligned_cols=266  Identities=14%  Similarity=0.087  Sum_probs=171.7

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC-------CCccEEEEEecCCCcccccCC
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-------GLIPCCLVATLGTTGTCAFDN  101 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~-------~~~~~~vv~~~~~t~~G~i~d  101 (367)
                      +..-|+.++.+|.|+..+|++.|+..+.+..+     |+.+||+.|++...+       .+..++|++-.-.++-|.+.+
T Consensus       220 ~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~  294 (519)
T KOG1357|consen  220 KGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD  294 (519)
T ss_pred             CCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc
Confidence            46778899999999999999999999999987     899999999886543       244456777777778999999


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccC-----hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLL-----PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT  176 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  176 (367)
                      +.++.+++|+|.++++.|+||+++.+..     ..+..  .+.+.+|++-....|.+.+.   |.....++.... .+..
T Consensus       295 Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g--~d~~dvDImMGtftKSfga~---GGyiagsk~lid-~lrt  368 (519)
T KOG1357|consen  295 LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFG--VDPEDVDIMMGTFTKSFGAA---GGYIAGSKELID-YLRT  368 (519)
T ss_pred             cHHHHHhhccccEEEEeeccccccccCCCCcceeeccC--CCchhheeecceehhhcccc---cceecCcHHHHh-hhcc
Confidence            9999999999999999999999877621     11111  12346799999999988743   222222232222 1111


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh----hHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY----GLKGLQ  252 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~g~~  252 (367)
                      ...+..            |                               ....++.. +-....+++.+    +.++-+
T Consensus       369 ~s~~~~------------y-------------------------------at~~sppv-aqq~~ssl~~i~G~dgt~~g~  404 (519)
T KOG1357|consen  369 PSPSAL------------Y-------------------------------ATSLSPPV-AQQILTSVKHIMGEDGTNRGR  404 (519)
T ss_pred             CCCcee------------e-------------------------------cccCChHH-HHHHHHHHHhhcCCCcccHHH
Confidence            111110            0                               00011100 01111223322    344567


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC---CeeEEEEEecC
Q psy3048         253 AYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ---GRPFLRFVVTS  329 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---~~~~lRi~~~~  329 (367)
                      +..++..++++|++..|++. ||.+.+...++++-+-+.+.. ....+...|.++....+..+..-   -....|++. +
T Consensus       405 ~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~-k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~-S  481 (519)
T KOG1357|consen  405 QKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPA-KIVAFSREMLERNIGVVVVGFPATPLLESRARFCL-S  481 (519)
T ss_pred             HHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcc-cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh-c
Confidence            78889999999999999986 898888766655544433322 12345545555554333222111   123568844 5


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .+.+.||+|++++.+.+..++..
T Consensus       482 a~ht~e~ld~~l~~i~~~g~~~~  504 (519)
T KOG1357|consen  482 ASHTKEDLDRALEVIDRVGDEDG  504 (519)
T ss_pred             ccccHHHHHHHHHHHhhhchhhc
Confidence            66679999999999999876543

>PRK05939 hypothetical protein; Provisional

Probab=99.57  E-value=2.2e-13  Score=131.47  Aligned_cols=263  Identities=13%  Similarity=0.084  Sum_probs=158.0

Q ss_pred             EEEecCCcchh---HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSS---VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s---~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|++++..|.+   +...+...|++++.++..     |+++|++++++++      .+|++.+++|++|.+.|+++|+++
T Consensus        88 ~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~t------klV~vesp~NptG~v~dl~~I~~l  156 (397)
T PRK05939         88 HLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPNT------RMVFVETIANPGTQVADLAGIGAL  156 (397)
T ss_pred             EEEECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCCC------eEEEEECCCCCCCCHHhHHHHHHH
Confidence            45556666543   344566689999999863     8999999997765      488889999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchh-hhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANH-LTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~-~~~~~~~~~~yl~~~~~  186 (367)
                      ||++|+++++|++|+.+... +   ....   .+|+++.+.+|+++++.+ .|++++.+... ..........|....  
T Consensus       157 a~~~gi~livD~t~a~~~~~-~---~~~~---gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~--  227 (397)
T PRK05939        157 CRERGLLYVVDNTMTSPWLF-R---PKDV---GASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGD--  227 (397)
T ss_pred             HHHcCCEEEEECCccccccc-C---cccc---CCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccc--
Confidence            99999999999999765322 1   1111   359999999999997522 34444422210 000000000000000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           ...+.+....                      .......+....+...|  +...|.+-+..+++++.+++..+.
T Consensus       228 -----~~~~~~~~~~----------------------~~~~~~~G~~~~p~~a~--l~~rgl~tl~~R~~~~~~na~~la  278 (397)
T PRK05939        228 -----PQQWGLTQIR----------------------KKGLRDMGATLSSEAAH--RIAIGAETLALRVDRSCSNALALA  278 (397)
T ss_pred             -----hhhHHHHHHH----------------------HHHHHhcCCCCCHHHHH--HHHcCcCcHHHHHHHHHHHHHHHH
Confidence                 0000000000                      00000011112233444  334467788889999999999999


Q ss_pred             HHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEe--EE-
Q psy3048         267 DLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKA--SF-  317 (367)
Q Consensus       267 ~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~--~~-  317 (367)
                      +.|+++|.+. +..|.                ..++++|.+.+ .....++.+.|.-  .+       .+..+|.  .+ 
T Consensus       279 ~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~-~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~  357 (397)
T PRK05939        279 QFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD-GIDCFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYY  357 (397)
T ss_pred             HHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC-HHHHHHHHHhCCcceEccCCCCCCeeeecCcccccc
Confidence            9999999864 44431                24788999875 3334456665532  11       0111111  00 


Q ss_pred             ---------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 ---------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ---------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                               .  ..+.+|+|+.     -||++.+++.|++.++
T Consensus       358 ~~~~~~~~~~gi~~~lvR~svG-----lEd~~dLi~dl~~Al~  395 (397)
T PRK05939        358 EMGAERRASMGIADSLIRVSVG-----IEDEADLIADFEQALD  395 (397)
T ss_pred             cCCHHHHHhcCCCCCeEEEEeC-----CCCHHHHHHHHHHHHh
Confidence                     0  1468999874     3689999999988875

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.57  E-value=4.8e-13  Score=130.21  Aligned_cols=258  Identities=12%  Similarity=0.053  Sum_probs=154.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCC------------cceEEEecCC------CCCcCHHHHHHHHHHHhhCCCccEEEEEec
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDD------NGVLRGDALLTAVKEDLAKGLIPCCLVATL   91 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~   91 (367)
                      +.+++.+...|-+...++...+            .+++.++.+.      +...|+++|++.+++..   ..+.++++..
T Consensus       123 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p  199 (413)
T cd00610         123 KKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP---EEVAAVIVEP  199 (413)
T ss_pred             CeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC---CCEEEEEEcc
Confidence            4566666667776655554432            2456666652      23448899999887521   1235677777


Q ss_pred             CCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecc
Q psy3048          92 GTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        92 ~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      ..+++|.+.|    +++|.++|++||+++++|++|+++............++ ..|+++++  |+++.+..+|+++.+ +
T Consensus       200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~g~~~g~~~~~-~  275 (413)
T cd00610         200 IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTLG--KGLGGGLPLGAVLGR-E  275 (413)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeEEEc--ccccCccccEEEEEc-H
Confidence            7777798877    99999999999999999999986422211111111222 34766554  999987778988764 3


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG  247 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (367)
                      +.... +. ...+...                                           ..-.+....+.+..++++.+.
T Consensus       276 ~~~~~-~~-~~~~~~~-------------------------------------------~t~~~~~~~~~a~~a~l~~l~  310 (413)
T cd00610         276 EIMDA-FP-AGPGLHG-------------------------------------------GTFGGNPLACAAALAVLEVLE  310 (413)
T ss_pred             HHHHh-hc-cCCCCCC-------------------------------------------CCCCcCHHHHHHHHHHHHHHH
Confidence            33321 10 0000000                                           000011122344445555543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEe--CCCCceeEEEEEcCCc-------hHHHHHHHHHhccCcEEEEEeEE
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDR-FELV--CPPSMGLVCFRLKGDN-------DLTNQLYERLMSHKQIYIIKASF  317 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g-~~~~--~~~~~~~v~f~~~~~~-------~~~~~l~~~L~~~g~~~~~~~~~  317 (367)
                      .   .++.++..++.+++++.|+++.. ..++  ..+...++.+.+....       ....++.+.|.++|+ ++.+.. 
T Consensus       311 ~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~~-  385 (413)
T cd00610         311 E---EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGL-LLRPSG-  385 (413)
T ss_pred             h---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCe-EEeecC-
Confidence            3   34566778888888888876521 1111  1234456666664321       345678889999984 444332 


Q ss_pred             CCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         318 QGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       318 ~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                        ...+|+++ +...+++|+++++++|+++
T Consensus       386 --~~~lR~~~-~~~~t~~~i~~~~~~l~~~  412 (413)
T cd00610         386 --GNVIRLLP-PLIITEEEIDEGLDALDEA  412 (413)
T ss_pred             --CCEEEEEC-CCcCCHHHHHHHHHHHHHh
Confidence              45899965 5667899999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02231 alanine transaminase

Probab=99.57  E-value=9.6e-13  Score=131.40  Aligned_cols=270  Identities=12%  Similarity=0.102  Sum_probs=163.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++....+......+...|++++.+++++  ++.+|+++|++++++..+++..+.+++++.++|+||.+   +.+++
T Consensus       216 gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~  295 (534)
T PLN02231        216 KDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRD  295 (534)
T ss_pred             CCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHH
Confidence            34567778899888888899999999999864  47999999999998754444345678888999999998   57788


Q ss_pred             HHHHHhhcCcEEEEecccccccccC-hh---hhhhhC--CC--CCccee-eeccccccc--cCCcceeEEEe--cchhhh
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLL-PE---YAHLKR--GL--EYVDSF-AFNAHKWLL--TNHDCSAMWVK--NANHLT  171 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~-~~---~~~~~~--~~--~~~D~~-~~~~hK~l~--~p~g~g~l~~~--~~~~~~  171 (367)
                      |+++|++||+++++|++|.-..+.. ..   +.....  +.  +....+ ..+..|.+.  .+..+|++.+.  +++..+
T Consensus       296 Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~  375 (534)
T PLN02231        296 IVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVRE  375 (534)
T ss_pred             HHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHH
Confidence            9999999999999999997655421 11   111110  11  111234 447899654  45778888763  233332


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hhHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YGLK  249 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~  249 (367)
                      ...... . ...                                              ++...........+..  .+..
T Consensus       376 ~l~k~~-~-~~~----------------------------------------------~s~~~~Q~~~~~~l~~p~~~~~  407 (534)
T PLN02231        376 QIYKVA-S-VNL----------------------------------------------CSNISGQILASLVMSPPKPGDE  407 (534)
T ss_pred             HHHHHH-h-hhc----------------------------------------------CCChHHHHHHHHHhCCCCCCcc
Confidence            211000 0 000                                              0000001111111110  0011


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCCch-----------HHHHHHHHHh-ccCc
Q psy3048         250 -------GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCF-RLKGDND-----------LTNQLYERLM-SHKQ  309 (367)
Q Consensus       250 -------g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~~-----------~~~~l~~~L~-~~g~  309 (367)
                             ..+++.+...+.++++.+.|++++|+.+..| +.+...| ++.....           ....++..|. +.|+
T Consensus       408 ~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p-~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV  486 (534)
T PLN02231        408 SYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKA-EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGI  486 (534)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC-CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCE
Confidence                   1233456677888889999998888887544 4444444 3321110           0123455555 4575


Q ss_pred             EEEEEeEEC---CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         310 IYIIKASFQ---GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       310 ~~~~~~~~~---~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .++.++.+.   +..++|+++.   .++++++..++.|.++.++.
T Consensus       487 ~vvPGs~Fg~~~g~~~~Rit~~---~~~e~l~eal~RL~~~~~~~  528 (534)
T PLN02231        487 VVVPGSGFGQVPGTWHFRCTIL---PQEDKIPAIVSRLTEFHKSF  528 (534)
T ss_pred             EEeCCcccCCCCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHHH
Confidence            444433332   3457999763   47899999999998887765

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.57  E-value=5.6e-13  Score=128.97  Aligned_cols=250  Identities=12%  Similarity=0.061  Sum_probs=154.9

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|++.+..+..+...++..|++++.+++++  ++.+|+++|++++.+.+      .++++++++|+||.+-+   +++|+
T Consensus       118 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~i~l~~p~NPtG~~~s~~~~~~l~  191 (393)
T TIGR03538       118 LVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRC------QLLFVCSPGNPTGAVLSLDTLKKLI  191 (393)
T ss_pred             eEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcc------eEEEEeCCCCCcCcccCHHHHHHHH
Confidence            477788888888888888999999999853  46789999999886654      47777899999999855   78899


Q ss_pred             HHHhhcCcEEEEecccccccccC--hh--hhhhhCCCC----Ccceeeeccccc-cccCCcceeEEEecchhhhhhccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLL--PE--YAHLKRGLE----YVDSFAFNAHKW-LLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~--~~--~~~~~~~~~----~~D~~~~~~hK~-l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      ++|++||+++++|++|+-..+..  +.  .........    .--+++.+..|. +.....+|+++.. +..+.+.... 
T Consensus       192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~-~~l~~~~~~~-  269 (393)
T TIGR03538       192 ELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD-AEILKAFLRY-  269 (393)
T ss_pred             HHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecC-HHHHHHHHHH-
Confidence            99999999999999997554321  00  000000010    012677889995 4555778887763 2333221100 


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLR  256 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~  256 (367)
                      ..+...                                           .      ...+...+++..+. .+.+++..+
T Consensus       270 ~~~~~~-------------------------------------------~------~~~~~q~~~~~~l~~~~~~~~~~~  300 (393)
T TIGR03538       270 RTYHGC-------------------------------------------A------MPIPTQLASIAAWNDEQHVRENRA  300 (393)
T ss_pred             HHhhcc-------------------------------------------C------cCHHHHHHHHHHhcChHHHHHHHH
Confidence            000000                                           0      00112222222222 334566666


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEE---------CCeeEEEEE
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASF---------QGRPFLRFV  326 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~---------~~~~~lRi~  326 (367)
                      +.++..+.+.+.|++.  +.+..|.....++++++. +  ..++.+.|.+ .|+ .+.++..         .+.+++|++
T Consensus       301 ~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~~-~--~~~~~~~l~~~~gV-~v~pg~~f~~~~~~~~~~~~~~Ris  374 (393)
T TIGR03538       301 LYREKFAAVLEILGQV--LDLELPDAGFYLWPKVPG-D--DEAFARALYEEENV-TVLPGRFLAREAEGVNPGEGRVRIA  374 (393)
T ss_pred             HHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECCC-C--HHHHHHHHHHHCCE-EEeCCccccccccCCCCCCCEEEEE
Confidence            6677777787887764  333334455566666651 2  4578878764 564 4443322         124699998


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy3048         327 VTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~  347 (367)
                      ++.   ++++++.++++|+++
T Consensus       375 ~~~---~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       375 LVA---PLEECVEAAERIRSF  392 (393)
T ss_pred             ecC---CHHHHHHHHHHHHHh
Confidence            753   578899888888764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08175 aminotransferase; Validated

Probab=99.57  E-value=7.7e-13  Score=128.11  Aligned_cols=262  Identities=14%  Similarity=0.088  Sum_probs=162.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh---hhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL---EELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl---~~I~~  107 (367)
                      -.|++++.+|......++..|++++.++.++++ .++++|++++++...   .+.++++++++|++|.+-+.   ++|++
T Consensus       116 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~  191 (395)
T PRK08175        116 DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESYP---KPKMMILGFPSNPTAQCVELEFFEKVVA  191 (395)
T ss_pred             CEEEEcCCCCcchHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhccC---CceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            457777888888888888899999999986543 358899988865211   13577788899999998666   79999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +|++||+++++|++|+...+........  +.+.....+++.+..|.++.| ..+|+++. +++...... ....+... 
T Consensus       192 ~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~-~~~l~~~~~-~~~~~~~~-  268 (395)
T PRK08175        192 LAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG-NPELVSALA-RIKSYHDY-  268 (395)
T ss_pred             HHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC-CHHHHHHHH-HHHhhccc-
Confidence            9999999999999997544321100000  111111235678899999644 55787765 333332211 00000000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                +   ............+.. ....+++..++..+..++
T Consensus       269 ------------------------------------------~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~  302 (395)
T PRK08175        269 ------------------------------------------G---TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDV  302 (395)
T ss_pred             ------------------------------------------C---CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence                                                      0   000001111222221 233466666777788888


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCc--hHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDN--DLTNQLYERLMS-HKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~--~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.|+++ |+.+..+.....++++++..-  ....++..+|.+ .| +.+.++. +  .+..++|+++.   .+++.+.
T Consensus       303 ~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~g-v~v~p~~~f~~~~~~~lRis~~---~~~~~~~  377 (395)
T PRK08175        303 LVKGLHEA-GWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAK-VCVSPGIGFGDYGDTHVRFALI---ENRDRIR  377 (395)
T ss_pred             HHHHHHHc-CCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCC-EEEeCchhhCcCCCCeEEEEeC---CCHHHHH
Confidence            99999887 776654555667777775421  124678777764 56 4555432 2  23468999764   3688899


Q ss_pred             HHHHHHHHHHHH
Q psy3048         339 FAWNEISHQSSE  350 (367)
Q Consensus       339 ~li~~l~~~~~~  350 (367)
                      .+++.|.+++++
T Consensus       378 ~al~~l~~~l~~  389 (395)
T PRK08175        378 QAIRGIKAMFRA  389 (395)
T ss_pred             HHHHHHHHHHHh
Confidence            998888888764

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.57  E-value=1.2e-13  Score=131.24  Aligned_cols=247  Identities=15%  Similarity=0.087  Sum_probs=146.4

Q ss_pred             CCcchhHHHHHHh-------CCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          37 DQSNSSVEKSAII-------GDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        37 ~~~H~s~~~~~~~-------~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-+|.|.......       ...+++.++++ +++.+|.+++++.+++..     |.+|++.. ++ .-...|++++.+|
T Consensus       120 ~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~G~-S~-y~~~~d~~~~reI  192 (399)
T PF00464_consen  120 HGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK-----PKLIICGA-SS-YPRPIDFKRFREI  192 (399)
T ss_dssp             GT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-------SEEEEE--SS-TSS---HHHHHHH
T ss_pred             hcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC-----CCEEEECc-hh-ccCccCHHHHHHH
Confidence            3456665443322       22466777777 679999999999998765     56766653 23 3444689999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEec-------------chhhhhhcc
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN-------------ANHLTNTFF  175 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~-------------~~~~~~~~~  175 (367)
                      |++.|+++++|.||-.+.+....+..   .++.||+++++.||.|.+|.| |++++++             .+..++ +.
T Consensus       193 ad~vga~l~~D~sH~~GLIa~g~~~~---P~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~-I~  267 (399)
T PF00464_consen  193 ADEVGAYLMADISHIAGLIAGGLFPN---PFPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEK-ID  267 (399)
T ss_dssp             HHHTT-EEEEE-TTTHHHHHTTSS-----GCCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHH-HH
T ss_pred             HHhcCcEEEecccccccceehheecC---ccccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHH-hc
Confidence            99999999999999888776655543   345689999999999999855 7888871             221111 10


Q ss_pred             CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHH
Q psy3048         176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAY  254 (367)
Q Consensus       176 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~  254 (367)
                         ..++++..                                           ++... ...++..++.......+++.
T Consensus       268 ---~avfP~~q-------------------------------------------g~~h~~~iaalAval~ea~~~~fk~Y  301 (399)
T PF00464_consen  268 ---SAVFPGLQ-------------------------------------------GGPHMHRIAALAVALKEALSPEFKEY  301 (399)
T ss_dssp             ---HHHTTTT--------------------------------------------SS--HHHHHHHHHHHHHHTSHHHHHH
T ss_pred             ---cccCCCcc-------------------------------------------cCcchhHHHHHHHHHhcccCHHHHHH
Confidence               11111111                                           11111 12344555666555566888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEeC-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC------CeeEEEEEe
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELVC-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ------GRPFLRFVV  327 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~------~~~~lRi~~  327 (367)
                      .++..++++.|.+.|.+. |++++. -.+.++|.+.+...+....+..++|.+.|++ +......      ....+|+..
T Consensus       302 a~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~-vnkn~iP~d~~~~~~sGlRlGT  379 (399)
T PF00464_consen  302 AKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGII-VNKNTIPGDRSPFVPSGLRLGT  379 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE--EEE--TTTSTTTT-SEEEEES
T ss_pred             HHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCee-ecccccCCCCCCCCCCEEEECC
Confidence            999999999999999996 999986 3477888888754222345677777777743 4332221      135799954


Q ss_pred             ---cCCCCCHHHHHHHHHH
Q psy3048         328 ---TSPETNQCDVAFAWNE  343 (367)
Q Consensus       328 ---~~~~~~~edid~li~~  343 (367)
                         +.....++|++.+.+.
T Consensus       380 ~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  380 PALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             HHHHHTT--HHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHhh
Confidence               2345567888877654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>KOG2040|consensus

Probab=99.56  E-value=1.2e-12  Score=126.44  Aligned_cols=298  Identities=15%  Similarity=0.106  Sum_probs=190.6

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      +++|.+.|+|...+-           .--|-+.+++-++|-.....+.+.|.+|+.|.++.+|.+|..+|+++.++..++
T Consensus       612 YaGL~~IRaY~~~kg-----------e~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~  680 (1001)
T KOG2040|consen  612 YAGLRVIRAYLESKG-----------EGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN  680 (1001)
T ss_pred             hhhHHHHHHHHHhcc-----------CCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh
Confidence            468899999988662           234677778889999999999999999999999999999999999998876643


Q ss_pred             CCccEEEEEecCCCcccccC-ChhhHHHHHhhcCcEEEEeccccccc-ccChhhhhhhCCCCCcceeeeccccccccCCc
Q psy3048          81 GLIPCCLVATLGTTGTCAFD-NLEELGPICQEYNIWLHVDAAYAGSA-LLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD  158 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~-dl~~I~~l~~~~gi~l~vD~a~~~~~-~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g  158 (367)
                         ...+.+++|+| .|+++ .+++++++.|+||--++.|||.=-.. -.+.+      |--.+|+...+.||.|.-|.|
T Consensus       681 ---Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~p------Gd~GaDV~HLNLHKTFcIPHG  750 (1001)
T KOG2040|consen  681 ---LAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRP------GDIGADVCHLNLHKTFCIPHG  750 (1001)
T ss_pred             ---hheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCC------ccccccceeecccceeeecCC
Confidence               35789999977 79884 89999999999999999999742111 11111      212459999999999988866


Q ss_pred             ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHH
Q psy3048         159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK  238 (367)
Q Consensus       159 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (367)
                      .|.=-+. +...++   .-++|+.+.+.-                   +|....+ ...-|+-+...|..+.   .. --
T Consensus       751 GGGPg~g-PIgVK~---HLapfLP~HpVv-------------------s~~~~~~-~~~~gsVsaaP~Gsa~---IL-pI  802 (1001)
T KOG2040|consen  751 GGGPGMG-PIGVKK---HLAPFLPSHPVV-------------------SPGRPED-TSPVGSVSAAPWGSAL---IL-PI  802 (1001)
T ss_pred             CCCCCCC-ccchhh---hccccCCCCCcc-------------------CCCCCCC-CCCccceeccCCCcce---ee-hh
Confidence            5541110 111111   123455443320                   0000000 0000100001111110   11 12


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCc----eeEEEEEcCC----chHHHHHHHHHhccCcE
Q psy3048         239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM----GLVCFRLKGD----NDLTNQLYERLMSHKQI  310 (367)
Q Consensus       239 ~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~----~~v~f~~~~~----~~~~~~l~~~L~~~g~~  310 (367)
                      -|+.++.+|..|+.+.-+-..-+++|+.++|+++  .+++.....    ..+.+.+.+-    +..+-+++++|.+-|..
T Consensus       803 SwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFH  880 (1001)
T KOG2040|consen  803 SWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFH  880 (1001)
T ss_pred             HHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCC
Confidence            3788999999999988888889999999999986  444442222    2222333221    23356899999988832


Q ss_pred             EEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         311 YIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       311 ~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .+. -.|.-.+.+=|-+ .-.-+++|+|+|++++-.+-+|+
T Consensus       881 aPT-mswPV~gtLMIEP-TESE~k~ElDRfcdAliSIreEI  919 (1001)
T KOG2040|consen  881 APT-MSWPVAGTLMIEP-TESEDKAELDRFCDALISIREEI  919 (1001)
T ss_pred             CCc-cccccCCceEecc-CccccHHHHHHHHHHHHHHHHHH
Confidence            221 2333334454433 34456899999999987766554

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.55  E-value=5.1e-13  Score=128.12  Aligned_cols=245  Identities=13%  Similarity=0.113  Sum_probs=159.7

Q ss_pred             eEEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..+.++..    .++..|+++++++.+     +.+.+++++++++      .+|.+++++|+++.+.||++|+
T Consensus       104 D~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~-----~~e~l~~al~~~T------klV~lesPsNP~l~v~dl~~I~  172 (395)
T PRK05967        104 DHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE-----IGAGIAKLMRPNT------KVVHTEAPGSNTFEMQDIPAIA  172 (395)
T ss_pred             CEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCcHHHHHHHH
Confidence            356667778888764    345679999998653     4578999998776      4899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|++++||++++...+. ...+   .|   +|+++.+..|++.+..+  .|++ +.++....+..    .+... 
T Consensus       173 ~la~~~g~~vvVD~t~a~p~~~-~pl~---~G---aDivv~S~tKy~~Gh~d~~~G~v-~~~~~~~~~l~----~~~~~-  239 (395)
T PRK05967        173 EAAHRHGAIVMMDNTWATPLYF-RPLD---FG---VDISIHAATKYPSGHSDILLGTV-SANEKCWPQLL----EAHGT-  239 (395)
T ss_pred             HHHHHhCCEEEEECCccCceec-ChhH---cC---CCEEEEecccccCCCCCeeEEEE-EcCHHHHHHHH----HHHHH-
Confidence            9999999999999999764332 2222   24   49999999999664322  4433 33333222110    00000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                   .+....+...|.  ...|.+-+.-+++++.+.+..
T Consensus       240 ---------------------------------------------~G~~~~p~da~l--~~rgl~Tl~lR~~~~~~na~~  272 (395)
T PRK05967        240 ---------------------------------------------LGLCAGPDDTYQ--ILRGLRTMGIRLEHHRKSALE  272 (395)
T ss_pred             ---------------------------------------------cCCCCCHHHHHH--HHcCcccHHHHHHHHHHHHHH
Confidence                                                         001112244443  344677788899999999999


Q ss_pred             HHHHhcCCCCeE-EeCCC----------------CceeEEEEEcCC----chHHHHHHHHHhcc--C-------cEEEEE
Q psy3048         265 FADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGD----NDLTNQLYERLMSH--K-------QIYIIK  314 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~----~~~~~~l~~~L~~~--g-------~~~~~~  314 (367)
                      +.+.|+++|.+. +..|.                ..++++|.+++.    .+...++.++|.--  +       .+..++
T Consensus       273 lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~  352 (395)
T PRK05967        273 IARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHV  352 (395)
T ss_pred             HHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeC
Confidence            999999999874 55441                247899999642    23344666665421  1       000110


Q ss_pred             eE-E-------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         315 AS-F-------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       315 ~~-~-------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .. .       ...+.+|+|+.     -||.+.+++.|++.++.+
T Consensus       353 ~~~~~~~~~~~~~~~liRlSvG-----lEd~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        353 KLGDRTVAKAPYAGPVIRLQIG-----LEDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCChhHhhhccCCCCeEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence            00 0       01248999774     367888899998887754

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.55  E-value=1.2e-12  Score=124.10  Aligned_cols=247  Identities=13%  Similarity=0.051  Sum_probs=167.7

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      .|+++..++......++..|++++.|+.++ +.+|++.+.+++.+.+      .+|.+++|+|+||..-+.++|.+++..
T Consensus       101 ~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~~------~lv~i~nPNNPTG~~~~~~~l~~l~~~  173 (356)
T COG0079         101 TVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDKT------KLVFLCNPNNPTGTLLPREELRALLEA  173 (356)
T ss_pred             EEEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence            455567788888888999999999999977 9999999999998854      489999999999999777777777664


Q ss_pred             c--CcEEEEecccccccccChhhhhhhCCCCCcc--eeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         112 Y--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVD--SFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       112 ~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D--~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      -  +.+++||+||.-+.-  +....   .+...+  ++.=+..|.++.+ ..+|+.+. +++.+........+|      
T Consensus       174 ~~~~~~vVvDEAY~eF~~--~~~~~---l~~~~~nlivlRTfSKa~gLAGlRlGy~ia-~~~~i~~l~~vr~p~------  241 (356)
T COG0079         174 LPEGGLVVIDEAYIEFSP--ESSLE---LLKYPPNLIVLRTFSKAFGLAGLRVGYAIA-NPELIAALNKVRPPF------  241 (356)
T ss_pred             CCCCcEEEEeCchhhcCC--chhhh---hccCCCCEEEEEecHHhhhcchhceeeccC-CHHHHHHHHHhcCCC------
Confidence            3  889999999854322  11111   111223  4555678866554 56777443 444443221111111      


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~~l  265 (367)
                                                              ..      ..++..++...+ ..+-+++.+++..+.++++
T Consensus       242 ----------------------------------------~v------~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl  275 (356)
T COG0079         242 ----------------------------------------NV------SSPALAAAIAALRDADYLEESVERIREERERL  275 (356)
T ss_pred             ----------------------------------------CC------CHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence                                                    10      112333333322 2356788888899999999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      .+.|++++ +.-+.|...|.+.++++. .. ...+.+.|.++|++.-.... .....++||++.    ++++.++++++|
T Consensus       276 ~~~l~~~~-~~~v~pS~aNFvlv~~~~-~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg----t~een~~ll~AL  348 (356)
T COG0079         276 YAALKALG-LFGVFPSQANFVLVRVPD-AE-AAALAEALLKKGILVRDCSSVGLLPGYLRITVG----TPEENDRLLAAL  348 (356)
T ss_pred             HHHHHhCC-CCeecCCCCcEEEEECCC-cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC----CHHHHHHHHHHH
Confidence            99999985 553445667888888765 33 56899999999954333222 123569999774    577889999999


Q ss_pred             HHHHHH
Q psy3048         345 SHQSSE  350 (367)
Q Consensus       345 ~~~~~~  350 (367)
                      +++.+.
T Consensus       349 ~~~~~~  354 (356)
T COG0079         349 REVLKG  354 (356)
T ss_pred             HHHHhc
Confidence            998654

>PRK06855 aminotransferase; Validated

Probab=99.55  E-value=1.2e-12  Score=128.06  Aligned_cols=265  Identities=13%  Similarity=0.044  Sum_probs=156.7

Q ss_pred             eEEEecCCcchhHHHHH-HhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          31 LVAYASDQSNSSVEKSA-IIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~-~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      -.|++.+.++.....+. ...|++++.++.+  +++.+|+++|+++++...+    +.++++++++||||.+-   .+++
T Consensus       120 d~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~----~~~i~l~~P~NPTG~~~s~~~~~~  195 (433)
T PRK06855        120 ARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPS----IAGILLINPDNPTGAVYPKEILRE  195 (433)
T ss_pred             CeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCC----ceEEEEECCCCCCCcCCCHHHHHH
Confidence            34666677777654432 3458888888875  3478999999999863211    24677889999999994   4677


Q ss_pred             HHHHHhhcCcEEEEecccccccccChh---hhhhhCCCCCcceeeeccccccc-cCCcceeEEEecc---hhhhhhccCC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNA---NHLTNTFFTD  177 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~---~~~~~~~~~~  177 (367)
                      |+++|++||++++.|++|+...+....   ......+  .-.++..+..|.++ ....+|+++..+.   ..+...+...
T Consensus       196 l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~--~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~  273 (433)
T PRK06855        196 IVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD--VPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSI  273 (433)
T ss_pred             HHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCc--CCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHH
Confidence            788899999999999999865442211   1111111  11367788899996 5688999887321   1111111000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh----HHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG----LKGLQA  253 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~g~~~  253 (367)
                      ..+....                                            .+..   .+...++...+.    .+.+++
T Consensus       274 ~~~~~~~--------------------------------------------~~~~---~~~Q~a~~~~l~~~~~~~~~~~  306 (433)
T PRK06855        274 LNAKMIE--------------------------------------------VCST---TLPQMAIPRIMSHPEYKNYLKE  306 (433)
T ss_pred             HHhhccc--------------------------------------------cCCC---hHHHHHHHHhhcCCcHHHHHHH
Confidence            0000000                                            0000   112222222221    234566


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc--------------------------hHHHHHHHH-Hhc
Q psy3048         254 YLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN--------------------------DLTNQLYER-LMS  306 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~--------------------------~~~~~l~~~-L~~  306 (367)
                      ..+...+..+.+.+.|++++|+.+..|.....+++++++.-                          ....++... +.+
T Consensus       307 ~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  386 (433)
T PRK06855        307 RNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLAS  386 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            66677788888899998887876544433344555554310                          013345544 445


Q ss_pred             cCcEEEEEeE-EC-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         307 HKQIYIIKAS-FQ-GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       307 ~g~~~~~~~~-~~-~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .|+ .+.|+. +. ....+|++++.  .++++++..++.|.+++++.
T Consensus       387 ~gV-~v~PG~~F~~~~~~~Rls~~~--~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        387 TGI-CVVPLSSFCTELNGFRVTLLE--RDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             cCE-EEecCCcCCCCCCceEEEECC--CcHHHHHHHHHHHHHHHHHH
Confidence            564 444443 31 22369998753  36899999999999988753

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.55  E-value=5.3e-13  Score=129.32  Aligned_cols=276  Identities=13%  Similarity=0.157  Sum_probs=162.4

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...+.+....    +...|+++++++.    .+|+++++++++++|+      +|++.++.|+++.+.||++|++
T Consensus       102 ~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~----~~d~~~l~~~I~~~Tk------~I~~e~pgnP~~~v~Di~~I~~  171 (432)
T PRK06702        102 HLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP----NLTADEIVALANDKTK------LVYAESLGNPAMNVLNFKEFSD  171 (432)
T ss_pred             EEEECCCchHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHhCCcCCe------EEEEEcCCCccccccCHHHHHH
Confidence            566777888766555    5668999999864    3699999999988774      6777889999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||++|+++++|++++...+ ...+.   .|   +|+.+.|..||+++..+ .|.+.+.... +.-........+.....
T Consensus       172 iA~~~gi~livD~T~~tP~~-~~pl~---~G---ADIvv~S~TKy~~Ghsd~l~G~v~~~~~-~~w~~~~~~~l~~~~~~  243 (432)
T PRK06702        172 AAKELEVPFIVDNTLATPYL-CQAFE---HG---ANIIVHSTTKYIDGHASSLGGIVIDGGN-FDWTNGKYPELVEPDPS  243 (432)
T ss_pred             HHHHcCCEEEEECCCCchhh-CChhh---cC---CCEEEEccccccCCCcceeceEEEeCCC-ccccccccccccccccc
Confidence            99999999999999864433 22111   23   59999999999998743 4444442221 10000000000000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                             -+. +.|..... -++........    ..+++.    ....++..|..  ..+.+-++.++++..+++.++.
T Consensus       244 -------~~~-~~~~~~~~-~~~~~~~~~~~----~~~~~g----~~~sp~~a~l~--~rgL~Tl~lR~~r~~~Na~~la  304 (432)
T PRK06702        244 -------YHG-VSYVQNFG-AAAYIVKARVQ----LLRDYG----NCMSPFNAYIS--NIGLETLHLRMERHSENALAVA  304 (432)
T ss_pred             -------ccc-cchhhccc-hhhHHHHHHHH----HHHHcc----CCCCHHHHHHH--HhccCcHHHHHHHHHHHHHHHH
Confidence                   000 00000000 00000000000    001111    12233444443  4456678899999999999999


Q ss_pred             HHhcCCCCeEE-eCC-----C------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEe--EE
Q psy3048         267 DLVEKDDRFEL-VCP-----P------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKA--SF  317 (367)
Q Consensus       267 ~~L~~~~g~~~-~~~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~--~~  317 (367)
                      +.|+++|.+.- ..|     |            ..++++|.+++..+...++.+.|.--.         .+...|.  .+
T Consensus       305 ~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th  384 (432)
T PRK06702        305 KWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTH  384 (432)
T ss_pred             HHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCc
Confidence            99999998763 333     1            136889998753333446666553211         0111110  01


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                                .  ..+.+|+|+.     -||+|.+++.|++.++
T Consensus       385 ~~~~~~~~~~~Gi~~~liRlSvG-----lEd~eDLi~Dl~~Al~  423 (432)
T PRK06702        385 RQLSAEDQRLAGVTSDLIRLSVG-----IEDVSDIIADLEAALV  423 (432)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHh
Confidence                      1  1458999774     3689999999998876

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.54  E-value=6.7e-12  Score=121.81  Aligned_cols=270  Identities=10%  Similarity=0.004  Sum_probs=156.5

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcch-hHHHHHHhCCc------------ceEEEecCCCCCcCHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNS-SVEKSAIIGDV------------PVRQLRSDDNGVLRGD   68 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~-s~~~~~~~~g~------------~v~~v~~~~~~~~d~~   68 (367)
                      .||++||.+...++.         ...++.+|++.+.+|. +...++...|-            .+..++.+     |++
T Consensus       109 ~ai~~a~~~~~~~~~---------~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~  174 (401)
T TIGR01885       109 TAIKLARKWGYKVKG---------IPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLE  174 (401)
T ss_pred             HHHHHHHHHhhhhcC---------CCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHH
Confidence            367777776432210         0123667777776644 44555554331            23334332     789


Q ss_pred             HHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcce
Q psy3048          69 ALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS  144 (367)
Q Consensus        69 ~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~  144 (367)
                      +|++++++..   ....+|++....+++|.+.|    +++|.++|++||+++++|++|.+.......+.....++ ..|+
T Consensus       175 ~le~~l~~~~---~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di  250 (401)
T TIGR01885       175 ALEEALEDHG---PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV-KPDI  250 (401)
T ss_pred             HHHHHHHhcC---CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCC-CCCE
Confidence            9999986432   22346666667778899877    99999999999999999999865332221111111222 3587


Q ss_pred             eeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcc
Q psy3048         145 FAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI  223 (367)
Q Consensus       145 ~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (367)
                      ++++  |.+.++ ..+|+++.+ ++... .+..  .+..                                         
T Consensus       251 ~~~g--K~l~~g~~~ig~v~~~-~~i~~-~~~~--~~~~-----------------------------------------  283 (401)
T TIGR01885       251 VLLG--KALSGGVYPVSAVLAD-DDVML-TIKP--GEHG-----------------------------------------  283 (401)
T ss_pred             EEee--ccccCCCCCcEEEEEc-HHHHh-hccC--CCCC-----------------------------------------
Confidence            7765  888754 346666653 23222 1110  0000                                         


Q ss_pred             ccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCc--hHHHH
Q psy3048         224 QHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDN--DLTNQ  299 (367)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~--~~~~~  299 (367)
                        .+. .+....+....++|+.+..+.   +.++..++++++++.|++++ ..++.  .+...+..+.+....  ....+
T Consensus       284 --~t~-~~~p~~~~aa~a~L~~i~~~~---l~~~~~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~  356 (401)
T TIGR01885       284 --STY-GGNPLACAVAVAALEVLEEEK---LAENAEKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKTGRTAWD  356 (401)
T ss_pred             --CCC-CCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcchhHHHH
Confidence              000 011122344455566554433   44577788999999998873 22221  122233333343211  24578


Q ss_pred             HHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         300 LYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       300 l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      +.+.|.++|. ++.+   .+...+|+++ +...+++||++++++|++++
T Consensus       357 l~~~l~~~Gv-~v~~---~~~~~lRi~p-~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       357 LCLKLKEKGL-LAKP---THGNIIRLAP-PLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             HHHHHHhCCE-EEEe---cCCCEEEEeC-CccCCHHHHHHHHHHHHHHh
Confidence            8999998884 4433   2346899965 56788999999999998864

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.54  E-value=3.2e-12  Score=122.89  Aligned_cols=252  Identities=12%  Similarity=0.038  Sum_probs=156.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      .|++.+.++......++..|++++.++.++ ++.+|+++|++++++...  ..+.+|+++.++||||.+-+.+++.++.+
T Consensus       118 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~--~~~k~i~l~~P~NPTG~~~s~~~l~~l~~  195 (374)
T PRK02610        118 SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQN--PPVRVVFVVHPNSPTGNPLTAAELEWLRS  195 (374)
T ss_pred             eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcC--CCceEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            577788899999999999999999999864 489999999999864110  11357888899999999966666555543


Q ss_pred             -hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 -EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 -~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                       .+|+++++|++|.-+.... .. ..+....+ -+++.+..|.++ .+..+|+++.. +..++........         
T Consensus       196 ~~~~~~iI~De~Y~~~~~~~-~~-~~~~~~~~-~ivi~SfSK~~g~~GlRiG~~v~~-~~l~~~l~~~~~~---------  262 (374)
T PRK02610        196 LPEDILVVIDEAYFEFSQTT-LV-GELAQHPN-WVILRTFSKAFRLAAHRVGYAIGH-PELIAVLEKVRLP---------  262 (374)
T ss_pred             ccCCcEEEEeccccccCccc-hH-HHHhcCCC-EEEEEecchhccCcccceeeeecC-HHHHHHHHHhcCC---------
Confidence             1489999999997543211 11 11111111 255678899994 55788888763 3333221110000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                            +                               ..   ..+....+..++..  .+.+.+.+++..+..+.+.+.
T Consensus       263 ------~-------------------------------~~---~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~  300 (374)
T PRK02610        263 ------Y-------------------------------NL---PSFSQLAAQLALEH--RQELLAAIPEILQERDRLYQA  300 (374)
T ss_pred             ------C-------------------------------CC---CHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHH
Confidence                  0                               00   00111111222221  123333334444556777788


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      |++++++.+ .|+..+.++++++. .....++.+.|.++|+. +.+    ..+++|+++.    +.+++++++++|++++
T Consensus       301 L~~~~~~~~-~p~~g~f~~~~l~~-~~~~~~~~~~l~~~gi~-v~~----~~~~lRls~~----~~~~~~~~l~~l~~~l  369 (374)
T PRK02610        301 LQELPQLRV-WPSAANFLYLRLSQ-DAALAALHQALKAQGTL-VRH----TGGGLRITIG----TPEENQRTLERLQAAL  369 (374)
T ss_pred             HHhCCCcEe-CCCcceEEEEeCCC-CCCHHHHHHHHHHCCEE-EEe----CCCeEEEeCC----CHHHHHHHHHHHHHHH
Confidence            887778765 35556666666654 22356888888888854 322    2458999764    3577899999999887


Q ss_pred             HHh
Q psy3048         349 SEM  351 (367)
Q Consensus       349 ~~~  351 (367)
                      +++
T Consensus       370 ~~~  372 (374)
T PRK02610        370 TQL  372 (374)
T ss_pred             hhc
Confidence            654

>PRK03321 putative aminotransferase; Provisional

Probab=99.54  E-value=6.8e-13  Score=126.47  Aligned_cols=245  Identities=9%  Similarity=-0.031  Sum_probs=154.0

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++...+......++..|++++.++.++++.+|++++++++++.+      .+|++++++|++|.+-|.++|.++|+
T Consensus        99 d~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~l~~l~~  172 (352)
T PRK03321         99 DEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITDRT------RLIFVCNPNNPTGTVVTPAELARFLD  172 (352)
T ss_pred             CEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccCC------CEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence            345556666666666777889999999987668899999999987644      37778899999999999999999999


Q ss_pred             h--cCcEEEEecccccccccCh---hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         111 E--YNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       111 ~--~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      .  +|+++++|++|+.+.+...   .... .....+ -+++.+..|.++.| ..+|+++.. ++........   .  . 
T Consensus       173 ~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~-vi~~~S~SK~~g~~GlRiG~~v~~-~~~~~~~~~~---~--~-  243 (352)
T PRK03321        173 AVPADVLVVLDEAYVEYVRDDDVPDGLEL-VRDHPN-VVVLRTFSKAYGLAGLRVGYAVGH-PEVIAALRKV---A--V-  243 (352)
T ss_pred             hCCCCeEEEEechHHHhccCcCCCcHHHH-HhhCCC-EEEEecchHHhhhHHHhhhhhcCC-HHHHHHHHHh---c--C-
Confidence            7  6999999999976543211   1111 111111 24555789998743 457887764 3333221100   0  0 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~  263 (367)
                               .+                               +      ...+...+++..+ ..+.+.+..++..+..+
T Consensus       244 ---------~~-------------------------------~------~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~  277 (352)
T PRK03321        244 ---------PF-------------------------------S------VNSLAQAAAIASLAAEDELLERVDAVVAERD  277 (352)
T ss_pred             ---------CC-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                     00                               0      0112222222222 12233444455555566


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      ++.+.|++. |+.+. ++..+.+.+++..   ...++.+.|.++|+ .+.+  + +..++|+++.    +.+++++++++
T Consensus       278 ~~~~~L~~~-~~~~~-~~~g~~i~i~l~~---~~~~~~~~l~~~gI-~v~~--~-~~~~iRi~~~----~~~~~~~~~~a  344 (352)
T PRK03321        278 RVRAALRAA-GWTVP-PSQANFVWLPLGE---RTADFAAAAAEAGV-VVRP--F-AGEGVRVTIG----APEENDAFLRA  344 (352)
T ss_pred             HHHHHHHHC-CCccC-CCCCCEEEEeCCC---CHHHHHHHHHHCCE-EEEc--c-CCCcEEEeeC----CHHHHHHHHHH
Confidence            788888776 66543 3444555665532   25678888888884 4443  2 3346999753    68999999999


Q ss_pred             HHHHHH
Q psy3048         344 ISHQSS  349 (367)
Q Consensus       344 l~~~~~  349 (367)
                      |+++.+
T Consensus       345 l~~~~~  350 (352)
T PRK03321        345 ARAWRA  350 (352)
T ss_pred             HHHHhc
Confidence            998743

>KOG3846|consensus

Probab=99.54  E-value=5.7e-13  Score=118.48  Aligned_cols=276  Identities=12%  Similarity=0.143  Sum_probs=185.0

Q ss_pred             CcchhHHHHHHhCCcce----EEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhc
Q psy3048          38 QSNSSVEKSAIIGDVPV----RQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEY  112 (367)
Q Consensus        38 ~~H~s~~~~~~~~g~~v----~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~  112 (367)
                      +.||+++..+++.|..+    +.+.+.+ .-.+..+++...|+++.   ....+|+++....+||+..||.+|...-+..
T Consensus       167 SDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkng---DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~k  243 (465)
T KOG3846|consen  167 SDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNG---DEIALVCFSGVQYYTGQYFDIGAITFAGQFK  243 (465)
T ss_pred             chHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcC---CeEEEEEeecceeecccccchhhhhhcccCC
Confidence            46888888899999854    4455444 36788888888887654   3457899999999999999999999888889


Q ss_pred             CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                      |+++-.|-||+.+..+...+.|   |+   |+.+|++.|+++++ .|+|.+++.++. .......-.++..+...     
T Consensus       244 gc~VGfDLAHAvgNVpL~LHdW---gV---DFACWCSYKYlnaGaGgIgGlFvHekh-~~~~~prl~GWwgh~~s-----  311 (465)
T KOG3846|consen  244 GCLVGFDLAHAVGNVPLQLHDW---GV---DFACWCSYKYLNAGAGGIGGLFVHEKH-TKESLPRLAGWWGHDPS-----  311 (465)
T ss_pred             CcEechhhhhhhcCCceEEeec---CC---ceEEEeeecccccCCCccceeeeehhh-hcchhhHHhhhccCCcc-----
Confidence            9999999999988877655554   55   99999999999886 557777775432 22211222233322211     


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                       ..|           ....-++  ..+|+   -.|-....+-....++..+|..+.+-.+.+..+|..-+..|+.-.++.
T Consensus       312 -~RF-----------~Mdnvl~--lipGa---~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~  374 (465)
T KOG3846|consen  312 -KRF-----------QMDNVLE--LIPGA---LGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKA  374 (465)
T ss_pred             -hhh-----------hhccccc--cCccc---cccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHH
Confidence             111           0001111  12222   112222222234467778888888888999999999999888777765


Q ss_pred             CCC-----------eEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHH
Q psy3048         272 DDR-----------FELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       272 ~~g-----------~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~ed  336 (367)
                      ..|           +.++.|.    +--.+++.+.-   .+..+++.|.++|.+    ..-+.++.+|+++...||+-.|
T Consensus       375 ~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss---p~~~vfqeL~krGv~----~DkR~PNvIRvAPvpLYN~f~D  447 (465)
T KOG3846|consen  375 SKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS---PTPKVFQELHKRGVI----GDKRRPNVIRVAPVPLYNTFSD  447 (465)
T ss_pred             hcccCchhhhcceeEEEeCCcccccccceEEEEeCC---CchHHHHHHHHcCee----ccccCCCceEeecchhhccHHH
Confidence            433           3344442    11122222211   146788888889943    3345678999999889999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy3048         337 VAFAWNEISHQSSEMN  352 (367)
Q Consensus       337 id~li~~l~~~~~~~~  352 (367)
                      |-+++++|.++...+.
T Consensus       448 vy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  448 VYIFVNALNEAMDKLE  463 (465)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987654

>PRK09148 aminotransferase; Validated

Probab=99.54  E-value=1.1e-12  Score=127.31  Aligned_cols=266  Identities=12%  Similarity=0.059  Sum_probs=159.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh---hhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL---EELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl---~~I~~  107 (367)
                      -.|++++.++..+...+...|++++.++.+.++. .+++++++++....   .+.++++++|+|+||.+.+.   ++|.+
T Consensus       117 d~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~~---~~~~v~l~~P~NPtG~~~s~~~l~~l~~  192 (405)
T PRK09148        117 DVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSIP---KPIALIVNYPSNPTAYVADLDFYKDVVA  192 (405)
T ss_pred             CEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhccc---cceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            3466677888888888888999999999864432 34556666543211   13588899999999999765   67888


Q ss_pred             HHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +|++||+++++|++|+.+.+.......  .+.+.....+++.+..|.++.| ..+|+++. ++..+... .....+....
T Consensus       193 ~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~-~~~~i~~l-~~~~~~~~~~  270 (405)
T PRK09148        193 FAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG-NERLIAAL-TRVKSYLDYG  270 (405)
T ss_pred             HHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC-CHHHHHHH-HHHHHHhccC
Confidence            999999999999999765432111110  0111111235578889998744 66888875 33333221 1000110000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                 .   .......+...++. ....+++..++..+..++
T Consensus       271 -------------------------------------------~---~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~  303 (405)
T PRK09148        271 -------------------------------------------A---FTPIQVAATAALNG-PQDCIAEMRELYKKRRDV  303 (405)
T ss_pred             -------------------------------------------C---ChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence                                                       0   00011111222221 234456666777888888


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCC--chHHHHHHHHHh-ccCcEEEEEe-EEC--CeeEEEEEecCCCCCHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGD--NDLTNQLYERLM-SHKQIYIIKA-SFQ--GRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--~~~~~~l~~~L~-~~g~~~~~~~-~~~--~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.|+++ |+.+..|.....++++++..  .....++.+.|. +.|+ .+.++ .+.  +..++|+++.   .++++++
T Consensus       304 l~~~L~~~-~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV-~v~pg~~f~~~~~~~~Ri~~~---~~~~~l~  378 (405)
T PRK09148        304 LVESFGRA-GWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADV-AVAPGVGFGEHGDGYVRIALV---ENEQRIR  378 (405)
T ss_pred             HHHHHHHc-CCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCE-EEeCchhhCCCCCCeEEEEec---CCHHHHH
Confidence            88888886 66544343434555565431  112357777766 5674 44443 222  2469999764   3688999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy3048         339 FAWNEISHQSSEMNLP  354 (367)
Q Consensus       339 ~li~~l~~~~~~~~~~  354 (367)
                      ..++.|.++++++.+-
T Consensus       379 ~al~~l~~~l~~~~~~  394 (405)
T PRK09148        379 QAARNIKRFLSSADET  394 (405)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888876543

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.54  E-value=4.5e-13  Score=127.08  Aligned_cols=243  Identities=13%  Similarity=0.100  Sum_probs=137.5

Q ss_pred             CceEEE--ecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChh
Q psy3048          29 SRLVAY--ASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        29 ~~~~v~--~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      ++.+++  .+..+|.++..+++..|+++..+  +     +++++++ . +.      +.+|+++ +.+++|.+   .||+
T Consensus        95 gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--~-----~l~~l~~-~-~~------~~lIiit-g~s~~G~v~~~~~L~  158 (346)
T TIGR03576        95 GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--D-----ELSELKK-I-DG------TSLVVIT-GSTMDLKVVSEEDLK  158 (346)
T ss_pred             CCEEEECCCCCCCchhHHHHHHHcCCEEecc--C-----CHHHHhh-C-cC------ceEEEEE-CCCCCCcccCHHHHH
Confidence            355554  33679999999999999876332  1     4555432 1 11      2355554 56889998   7999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|+++|++||+++++|+||+.+.... +.......   .+|+++.+.+|++.++. .|+++.+ ++.++.......+|..
T Consensus       159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~---~~divv~s~SKalaG~r-~G~v~~~-~~li~~l~~~~~~~~~  233 (346)
T TIGR03576       159 RVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDL---GADLVVTSTDKLMDGPR-GGLLAGR-KELVDKIKSVGEQFGL  233 (346)
T ss_pred             HHHHHHHHcCCEEEEECCccccccccCCCCCHHHc---CCcEEEeccchhccccc-eEEEEeC-HHHHHHHHHhhcCccc
Confidence            99999999999999999998754321 11110011   24888999999775553 5776654 3333332222222221


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      .                                               ...+.+.+..++|+...   .+...+...+..
T Consensus       234 s-----------------------------------------------~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~  263 (346)
T TIGR03576       234 E-----------------------------------------------AQAPLLAAVVRALEEFE---LSRIRDAFKRKE  263 (346)
T ss_pred             C-----------------------------------------------ccHHHHHHHHHHHhhcc---HHHHHHHHHHHH
Confidence            1                                               00011223334444322   234445556666


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EEC-CeeEEEEEecCCCCCHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQ-GRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~-~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +++.+.++.+   .+. ++..+.+.+++++.+ ..+...+.|.++|+ .+.+. .+. ..+++||++....-+..+.+++
T Consensus       264 ~~~~~~l~~~---~~~-~~~~~f~~~~~~~~~-~~~~~~~ll~~~gV-~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~  337 (346)
T TIGR03576       264 EVYLRLFDKL---NVE-RTPTGFVIKGVEEEK-LIEIGLDLLRNYGI-ITITAVGMPGASKTLRFDLAAKDAERIGDDYL  337 (346)
T ss_pred             HHHHHHHHhC---CCC-cCCCeEEEEeCCCCC-HHHHHHHHHHhCCE-EEeCCcccCCCCCeEEEEEecChHHhcCHHHH
Confidence            6666666643   332 334555666664311 12344445556664 44443 222 2569999876432122379999


Q ss_pred             HHHHHHHH
Q psy3048         341 WNEISHQS  348 (367)
Q Consensus       341 i~~l~~~~  348 (367)
                      +++|++-+
T Consensus       338 ~~al~~~~  345 (346)
T TIGR03576       338 VEAVKDSL  345 (346)
T ss_pred             HHHHHhcc
Confidence            99998753

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.53  E-value=1.1e-12  Score=127.45  Aligned_cols=257  Identities=15%  Similarity=0.119  Sum_probs=157.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++......++..|++++.++..  +++.+|++.++++++....   ...+++++.++||||.+   +.+++
T Consensus       124 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~  200 (404)
T PTZ00376        124 GTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPN---GSVVLLHACAHNPTGVDPTEEQWKE  200 (404)
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHH
Confidence            3467778889999999999999999999983  3589999999999864321   12578889999999998   56788


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhh--hhCCCCCcceeeeccccccc-cCCcceeEE--EecchhhhhhccCC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMW--VKNANHLTNTFFTD  177 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~--~~~~~~~~~~~~~~  177 (367)
                      |+++|++||+++++|++|....+...  ....  .+.....--+++.+..|.++ .+..+|+++  +.+++..+.....-
T Consensus       201 l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~  280 (404)
T PTZ00376        201 IADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQL  280 (404)
T ss_pred             HHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHH
Confidence            88899999999999999976544210  1100  01111101266677899998 568899985  33443222111000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH--------H
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL--------K  249 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~  249 (367)
                      ..+....                                         +.  +.   ..+...++...+..        +
T Consensus       281 ~~~~~~~-----------------------------------------~~--~~---~~~~q~~~~~~l~~~~~~~~~~~  314 (404)
T PTZ00376        281 KLIIRPM-----------------------------------------YS--SP---PIHGARIADRILSDPELRAEWLS  314 (404)
T ss_pred             HHHHhhh-----------------------------------------cC--CC---chHHHHHHHHHhCCHHHHHHHHH
Confidence            0000000                                         00  00   01122222222211        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEE
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFV  326 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~  326 (367)
                      .+++..++..+..+.+.+.|+++.   ++.... |..+...+ +.-    +.+++++|.++..+++.++     +  |++
T Consensus       315 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-p~gg~f~~-~~~----~~~~~~~L~~~~~v~v~p~-----~--Ris  381 (404)
T PTZ00376        315 ELKEMSGRIQNMRQLLYDELKALGSPGDWEHII-NQIGMFSF-TGL----TKEQVERLIEKYHIYLLDN-----G--RIS  381 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cCceEEEe-cCC----CHHHHHHHHHhCCEeecCC-----C--eEE
Confidence            234445566778888888888762   243333 33333322 221    3577888888844565443     1  998


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++.  .+.++++.++++|++++..
T Consensus       382 ~~~--~~~~~~~~~~~~l~~~~~~  403 (404)
T PTZ00376        382 VAG--LTSKNVDYVAEAIHDVVRN  403 (404)
T ss_pred             Eec--cCHHhHHHHHHHHHHHHhc
Confidence            743  5789999999999998653

>PRK04311 selenocysteine synthase; Provisional

Probab=99.52  E-value=2.5e-12  Score=125.79  Aligned_cols=126  Identities=13%  Similarity=0.014  Sum_probs=90.4

Q ss_pred             CceEEEecCCcchh------HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCc--cc--c
Q psy3048          29 SRLVAYASDQSNSS------VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTG--TC--A   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s------~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~--~G--~   98 (367)
                      +.-.|++|+..|++      +...+...|+++++|+.+  ...++++++++++++|+      +|++++.+|+  +|  .
T Consensus       164 ~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~Tk------lV~~vh~sN~~i~G~~~  235 (464)
T PRK04311        164 AGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTA------LLLKVHTSNYRIEGFTK  235 (464)
T ss_pred             CCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCe------EEEEEcCCCccccccCC
Confidence            34467778777773      234556689999999763  34589999999988774      7788888876  45  5


Q ss_pred             cCChhhHHHHHhhcCcEEEEeccccccc----cc--Chh--hhhhhCCCCCcceeeeccccccccCCcceeEEEec
Q psy3048          99 FDNLEELGPICQEYNIWLHVDAAYAGSA----LL--LPE--YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l~vD~a~~~~~----~~--~~~--~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      ..|+++|+++||+||+++++|+++|...    +.  ...  ......   .+|++++|+|||+++| ++|+++.++
T Consensus       236 ~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~---GaDiv~fSg~K~LgGp-~~G~i~g~~  307 (464)
T PRK04311        236 EVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAA---GVDLVTFSGDKLLGGP-QAGIIVGKK  307 (464)
T ss_pred             cCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhc---CCcEEEecCcccccCC-ceEEEEEcH
Confidence            6799999999999999999999654321    10  000  111112   4699999999999988 578888754

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.52  E-value=1e-12  Score=127.86  Aligned_cols=274  Identities=15%  Similarity=0.170  Sum_probs=156.2

Q ss_pred             EEEecCCcchhH----HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~----~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..|.+.    ...+...|+++++++.+     |++++++++++.+      .+|++.+++|++|.+.|+++|++
T Consensus        98 ~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~t------~~V~le~p~NPtg~v~dl~~I~~  166 (418)
T TIGR01326        98 NIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDENT------KAVFAETIGNPAINVPDIEAIAE  166 (418)
T ss_pred             EEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCC------eEEEEECCCCCCCeecCHHHHHH
Confidence            455566666443    34456689999998753     8999999997655      47778899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +||++|+++++|++++.+.... ...   .   .+|+++.+.+|+++++ ...|++++......... . ....+.....
T Consensus       167 la~~~~i~livD~t~~~~~~~~-~l~---~---g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~-~-~~~~~~~~~~  237 (418)
T TIGR01326       167 VAHAHGVPLIVDNTFATPYLCR-PID---H---GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWAN-G-RFPLFTTPDP  237 (418)
T ss_pred             HHHHcCCEEEEECCCchhhcCC-chh---c---CCeEEEECccccccCCccceEEEEEecccccccc-c-ccccccCCCC
Confidence            9999999999999997653221 111   1   3599999999999864 33677777443211100 0 0000000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                         .+..-   ....  .++....++...        ..+....+....+...|  +...+...+..++++..+.+..+.
T Consensus       238 ---~q~a~---~~~~--~~~~~~~~~~~~--------~~~~~~~G~~~~p~~a~--~~~~~l~tl~~R~~~~~~~a~~la  299 (418)
T TIGR01326       238 ---SYHGL---VFTE--TFGNPAFIVKAR--------VQLLRDLGAALSPFNAF--LLLQGLETLSLRMERHVENALKVA  299 (418)
T ss_pred             ---ccccc---hhhh--hhchhhHHHHHH--------HHHHHhcCCCCCHHHHH--HHHCCcccHHHHHHHHHHHHHHHH
Confidence               00000   0000  000000000000        00000011112223333  333455667777788888899999


Q ss_pred             HHhcCCCCeEEeC-C-----C------------CceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEe--E-
Q psy3048         267 DLVEKDDRFELVC-P-----P------------SMGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKA--S-  316 (367)
Q Consensus       267 ~~L~~~~g~~~~~-~-----~------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~--~-  316 (367)
                      +.|.++|++..+. |     |            ..++++|.+.+......+++++|.--..         +...|.  . 
T Consensus       300 ~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h  379 (418)
T TIGR01326       300 EFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTH  379 (418)
T ss_pred             HHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCc
Confidence            9999999876443 2     1            1358899986533334566666542110         011111  0 


Q ss_pred             --E-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         317 --F-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       317 --~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                        .       .  .++.+|+|+.     -||++.+++.|++.+
T Consensus       380 ~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~Al  417 (418)
T TIGR01326       380 QQLSEEEQLKAGVTPGLIRLSVG-----IENIDDIIADLEQAL  417 (418)
T ss_pred             ccCCHHHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHhh
Confidence              0       1  1458999874     367888888888765

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.51  E-value=1.1e-12  Score=125.71  Aligned_cols=246  Identities=12%  Similarity=0.087  Sum_probs=156.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH--
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI--  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l--  108 (367)
                      -.|++++.++..+...+...|++++.|+.+ ++.+|+++|++++++.+      .++++++++|+||.+-+.+++.++  
T Consensus       106 d~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~~------~~v~i~~P~NPTG~~~~~~~l~~l~~  178 (366)
T PRK01533        106 DNIVTAGATFPQYRHHAIIEGCEVKEVALN-NGVYDLDEISSVVDNDT------KIVWICNPNNPTGTYVNDRKLTQFIE  178 (366)
T ss_pred             CEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcCC------cEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            356777888888888899999999999985 45799999999886654      377788999999999776555555  


Q ss_pred             -HhhcCcEEEEecccccccccChhhhhhhCCCC--Ccceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         109 -CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE--YVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       109 -~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~--~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                       |++++ ++++|++|..+....+ .......+.  .--+++.+..|.++ .+..+|+++.. ++.+.........     
T Consensus       179 ~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~-~~~~~~l~~~~~~-----  250 (366)
T PRK01533        179 GISENT-LIVIDEAYYEYVTAKD-FPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH-EELIEKLNVVRLP-----  250 (366)
T ss_pred             hCCCCC-EEEEEccHHHhhcccc-CcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC-HHHHHHHHHhcCC-----
Confidence             55555 6778999864332110 000011111  11366777899987 44677887653 3333221110000     


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAK  263 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~  263 (367)
                                +                               .      ...+...++...+. .+..++..+...+..+
T Consensus       251 ----------~-------------------------------~------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~  283 (366)
T PRK01533        251 ----------F-------------------------------N------VSSLAQKAATIAFGDDEFIEEIVRVNTEGLR  283 (366)
T ss_pred             ----------C-------------------------------C------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                      0                               0      01123333333332 2334555556667777


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      ++.+.++.+ |+++. +++.+.+.+++++    ..++.+.|.++|+. +.+  +  ..++||++.    +.++.++|+++
T Consensus       284 ~~~~~l~~~-g~~~~-~~~~nf~~~~~~~----~~~~~~~l~~~GI~-Vr~--~--~~~iRis~~----~~~~~~~l~~a  348 (366)
T PRK01533        284 QYESFCKEN-EIPFY-QSQTNFIFLPVEN----GGEIYEACAHAGFI-IRP--F--PNGVRITVG----TREQNEGVISV  348 (366)
T ss_pred             HHHHHHHhC-CCccC-CCcCcEEEEeCCC----HHHHHHHHHHCCcE-Ecc--C--CCceEEeCC----CHHHHHHHHHH
Confidence            777778776 77654 4566777776642    46788889989854 333  1  358999764    58999999999


Q ss_pred             HHHHHHHhhC
Q psy3048         344 ISHQSSEMNL  353 (367)
Q Consensus       344 l~~~~~~~~~  353 (367)
                      |+++.+...+
T Consensus       349 l~~~~~~~~~  358 (366)
T PRK01533        349 LQQHFENKKR  358 (366)
T ss_pred             HHHHHHhccc
Confidence            9998765433

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.51  E-value=1.4e-12  Score=123.12  Aligned_cols=212  Identities=12%  Similarity=-0.074  Sum_probs=146.1

Q ss_pred             EEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEE
Q psy3048          85 CCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWV  164 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~  164 (367)
                      ..|.+++..|.+|+..|     ++.+.+++++++|++.+.+..+.+-        ++.|++..+++|.++ |+|++++++
T Consensus       145 ~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~--------~~~dvi~agsQKnlg-P~Gltvviv  210 (364)
T PRK12462        145 PFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDV--------EAYGMVYAHAQKNLG-PAGVTVAII  210 (364)
T ss_pred             cEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCCh--------HHccEEEeeccccCC-CCceEEEEE
Confidence            47999999999999986     4444579999999987776655432        233999999999998 999999998


Q ss_pred             ecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH
Q psy3048         165 KNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR  244 (367)
Q Consensus       165 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (367)
                      +++. +++.....+.|+.-...              ..                     ...+....+-+..+.+..+++
T Consensus       211 s~~a-l~~~~~~~p~~ldy~~~--------------~~---------------------~~s~~nTPpv~~iy~l~~~l~  254 (364)
T PRK12462        211 RRAL-LERVPDTLPPMLDFRTH--------------VE---------------------HRSNYNTPPVFAIYVMALVLR  254 (364)
T ss_pred             CHHH-HhhccccCCchhhHHHH--------------Hh---------------------cCCCCCCchHHHHHHHHHHHH
Confidence            7643 43322111222211000              00                     000001111233456667788


Q ss_pred             HhhHH--HHHHHHHHHHHHHHHHHHHhcCCCCeEEeC-C---CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC
Q psy3048         245 SYGLK--GLQAYLRKHISLAKKFADLVEKDDRFELVC-P---PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ  318 (367)
Q Consensus       245 ~~~~~--g~~~~~~~~~~la~~l~~~L~~~~g~~~~~-~---~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  318 (367)
                      .+.++  |++++.+++++.++.+++.+.+.+||.... .   .....|+|++.+ .....++.+...++|.+.+.+  ++
T Consensus       255 ~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~-~~l~~~f~~~a~~~gl~~lkG--hr  331 (364)
T PRK12462        255 WIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQ-PRLDTLFKEQSTEAGFCGLSG--HR  331 (364)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCC-HHHHHHHHHHHHHCCCccccC--Cc
Confidence            77777  999999999999999999999998776543 2   245677888865 566778888888899554422  22


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .-+.+|+|. ..-.+.|+++.|++-++++.++
T Consensus       332 ~vgg~Ras~-yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        332 SIGGIRASL-YNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             ccCceEEEc-CCCCCHHHHHHHHHHHHHHHHh
Confidence            234599965 5667899999999999998654

>PLN02672 methionine S-methyltransferase

Probab=99.51  E-value=2.3e-12  Score=135.21  Aligned_cols=260  Identities=13%  Similarity=0.117  Sum_probs=162.1

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCC-Cccccc---CChhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGT-TGTCAF---DNLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~-t~~G~i---~dl~~  104 (367)
                      -.|++...++..+...++..|++++.++++  +++.+|+++|++++++..+     ..++++.|+ ||||.+   +.+++
T Consensus       779 D~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~-----~~I~L~nPnhNPTG~v~S~eeLe~  853 (1082)
T PLN02672        779 GTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKK-----PWVYISGPTINPTGLLYSNSEIEE  853 (1082)
T ss_pred             CEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCC-----CEEEEECcCCCCcCccCCHHHHHH
Confidence            456667789999999999999999999986  3689999999999865321     267788887 999998   57788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChh-----hhhhhCCCC---C--cceeeeccc-cccccCCcceeEEEecchhhhhh
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPE-----YAHLKRGLE---Y--VDSFAFNAH-KWLLTNHDCSAMWVKNANHLTNT  173 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~-----~~~~~~~~~---~--~D~~~~~~h-K~l~~p~g~g~l~~~~~~~~~~~  173 (367)
                      |+++|++||+++++|++|+...+....     .........   .  .-++..+.. |++.++..+|+++..++......
T Consensus       854 Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l  933 (1082)
T PLN02672        854 ILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAF  933 (1082)
T ss_pred             HHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHH
Confidence            888999999999999999865543211     111110010   0  123444666 55555588999887544333322


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh------
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG------  247 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------  247 (367)
                      ... ..+. .          .+                               .      ...+.+.+.+..+.      
T Consensus       934 ~~~-~~~s-~----------~~-------------------------------~------~~q~Aaaaalall~~~~~~~  964 (1082)
T PLN02672        934 HSA-PGLS-R----------PH-------------------------------S------TLKYTIKKLLGLKNQKSSDL  964 (1082)
T ss_pred             HHh-hhhc-C----------CC-------------------------------c------HHHHHHHHHHHHHhccCcHH
Confidence            110 0000 0          00                               0      01122222222111      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeE-EEEEcC----------C------chHHHHHHHHHhccCcE
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLV-CFRLKG----------D------NDLTNQLYERLMSHKQI  310 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v-~f~~~~----------~------~~~~~~l~~~L~~~g~~  310 (367)
                      .+.+.+..+...+..+++.+.|++. |+.+.. |+.+.+ +..+..          .      .....++.+.|.++..+
T Consensus       965 ~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~-PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GV 1042 (1082)
T PLN02672        965 LDGVAEQKKILKSRAERLKETLEAC-GWDVLE-PQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGL 1042 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEec-CCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCE
Confidence            2345566666788888899999887 787654 433433 333210          0      11356788888877435


Q ss_pred             EEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         311 YIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       311 ~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      .+.++.+ ..++++|+++..   ++++++++++.|+++.+
T Consensus      1043 aV~PGs~FG~~g~~RIsfa~---~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1043 CINSSSWTGIPGYCRFSFAL---EDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             EEecCcccCCCCeEEEEecC---CHHHHHHHHHHHHHHHH
Confidence            5555544 336799998753   68899999999998754

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.51  E-value=3.4e-12  Score=122.09  Aligned_cols=243  Identities=20%  Similarity=0.266  Sum_probs=155.7

Q ss_pred             EEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          33 AYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        33 v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      |++++..+......++    ..|+++.+++..     |+++|++++++++      .+|.+..++|++..+.||++|+++
T Consensus        97 iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~-----d~~~l~~~l~~~t------~~v~~EspsNP~l~v~Dl~~i~~~  165 (386)
T PF01053_consen   97 IVASDDLYGGTYRLLEELLPRFGVEVTFVDPT-----DLEALEAALRPNT------KLVFLESPSNPTLEVPDLEAIAKL  165 (386)
T ss_dssp             EEEESSSSHHHHHHHHHCHHHTTSEEEEESTT-----SHHHHHHHHCTTE------EEEEEESSBTTTTB---HHHHHHH
T ss_pred             eEecCCccCcchhhhhhhhcccCcEEEEeCch-----hHHHHHhhccccc------eEEEEEcCCCcccccccHHHHHHH
Confidence            5555666666655544    369999998764     8999999999977      489999999999999999999999


Q ss_pred             HhhcC-cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCC
Q psy3048         109 CQEYN-IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       109 ~~~~g-i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ||++| ++++||.+.+...+. .+..   .|   +|+++.|..|++++...  .|.+++++...+...+..   +     
T Consensus       166 a~~~g~~~~vVDnT~atp~~~-~pL~---~G---aDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~---~-----  230 (386)
T PF01053_consen  166 AKEHGDILVVVDNTFATPYNQ-NPLE---LG---ADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLRE---F-----  230 (386)
T ss_dssp             HHHTTT-EEEEECTTTHTTTC--GGG---GT----SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHH---H-----
T ss_pred             HHHhCCceEEeeccccceeee-ccCc---CC---ceEEEeeccccccCCcceeeEEEEECchhhhhhhhcc---h-----
Confidence            99998 999999998776443 2222   13   59999999999986532  455555542222211100   0     


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                               ....+....+...|..+  .|..-+.-++++..+++..+
T Consensus       231 -----------------------------------------~~~~G~~~~p~da~ll~--rgl~Tl~~R~~~~~~nA~~l  267 (386)
T PF01053_consen  231 -----------------------------------------RRLLGATLSPFDAWLLL--RGLRTLPLRMERQNENAEAL  267 (386)
T ss_dssp             -----------------------------------------HHHHT-B--HHHHHHHH--HHHTTHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------hhhcCccchHHHHHHHh--cCCCcHHHHHHHHHHHHHHH
Confidence                                                     00001112234444433  46777888999999999999


Q ss_pred             HHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEeE--E
Q psy3048         266 ADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKAS--F  317 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~~--~  317 (367)
                      .+.|+++|.++ |..|     |           ..++++|.+.+.......+.+.|.--  +       .+...|..  +
T Consensus       268 A~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h  347 (386)
T PF01053_consen  268 AEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISHPASTSH  347 (386)
T ss_dssp             HHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTT
T ss_pred             HHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCcccccccccchhh
Confidence            99999999886 5544     1           34799999987333456777776421  1       11111110  0


Q ss_pred             ----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 ----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                                .  .+..+|+|+.     -||.+.+++.|++.+|
T Consensus       348 ~~~~~e~~~~~Gi~~~liRlSvG-----lEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  348 RSLSPEERAEAGISDGLIRLSVG-----LEDPDDLIADLEQALE  386 (386)
T ss_dssp             TTSCHHHHHHTTS-TTEEEEE-------SS-HHHHHHHHHHHHH
T ss_pred             ccCChhhhhccCCCCCeeEEEec-----cCCHHHHHHHHHHhcC
Confidence                      0  1458999774     3789999999998865

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.51  E-value=8.4e-12  Score=120.88  Aligned_cols=270  Identities=14%  Similarity=0.106  Sum_probs=156.8

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc------------ceEEEecCCCCCcCHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV------------PVRQLRSDDNGVLRGDA   69 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~------------~v~~v~~~~~~~~d~~~   69 (367)
                      .||++||.+...+.   ++       .++.+|..+...|-+...+....+.            .+..++.+     |+++
T Consensus       107 ~Alk~ar~~~~~~~---~~-------~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~  171 (397)
T TIGR03246       107 AALKLARRYALDKH---GA-------DKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAA  171 (397)
T ss_pred             HHHHHHHHHHHhcC---CC-------CCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHH
Confidence            47888888755331   11       1245566667778777666555442            22334332     8899


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF  145 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~  145 (367)
                      |++++++.+      .+|++....+..|.+    .++++|.++|++||+++++|++|.+......-+.....++ ..|++
T Consensus       172 l~~~l~~~~------aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv-~pDi~  244 (397)
T TIGR03246       172 AKALISDKT------CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDIL  244 (397)
T ss_pred             HHHHhccCe------EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCC-CCCEE
Confidence            999986543      466666555555644    4599999999999999999999965422211111111233 35776


Q ss_pred             eeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccc
Q psy3048         146 AFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQH  225 (367)
Q Consensus       146 ~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (367)
                      +  ..|.+++...+|+++.++.  +...+..       ...     .                                 
T Consensus       245 t--~~K~lggG~pigav~~~~~--i~~~~~~-------~~~-----~---------------------------------  275 (397)
T TIGR03246       245 T--SAKALGGGFPIGAMLTTTE--IAAHLKV-------GTH-----G---------------------------------  275 (397)
T ss_pred             E--eehhhhCCcceeEEEEcHH--HHHhccC-------CCc-----C---------------------------------
Confidence            4  4788865556777777432  2222210       000     0                                 


Q ss_pred             ccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC-chHHHHHH
Q psy3048         226 WQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD-NDLTNQLY  301 (367)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~-~~~~~~l~  301 (367)
                      .+. .+......+..+++..+..   .++.++.+++.+++.++|+++. .+.++.. +.. .++.+.+... ......+.
T Consensus       276 ~t~-~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~  351 (397)
T TIGR03246       276 TTY-GGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFV  351 (397)
T ss_pred             CCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHH
Confidence            000 0111122333444444322   4566788888999999887752 1222211 112 2333333221 13456888


Q ss_pred             HHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         302 ERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       302 ~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.|.++|.+.. +   .+.+++|+++ +...+++||+.++++|++.++++
T Consensus       352 ~~l~~~Gv~~~-~---~g~~~lR~~p-~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       352 NAAAEEGVIAL-I---AGPNVVRFAP-SLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             HHHHHCCeEEe-e---cCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence            89999995532 2   2446899965 56678999999999999988753

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.50  E-value=7e-12  Score=116.65  Aligned_cols=269  Identities=13%  Similarity=0.069  Sum_probs=165.1

Q ss_pred             ceEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc-ccCChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-AFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-~i~dl~~  104 (367)
                      +-.++++...|+......+.    .|.+++.++.+     |.++|+++.+.++      ..+++.+|++ .| ...|+.+
T Consensus       164 ~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~~~~~~------~gv~vQyP~~-~G~~~~d~~~  231 (450)
T COG0403         164 RNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESADDGDV------FGVLVQYPNT-FGIVEEDLRA  231 (450)
T ss_pred             CceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhccccCe------EEEEEecCCC-CCccchhHHH
Confidence            56788899999999888764    46777777765     8888888822243      4788898865 77 6678999


Q ss_pred             HHHHHhhcCcEEEEecc-cccccccChhhhhhhCCCCCcceeeecccccc----ccCCcceeEEEecchhhhhhccCCcc
Q psy3048         105 LGPICQEYNIWLHVDAA-YAGSALLLPEYAHLKRGLEYVDSFAFNAHKWL----LTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a-~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l----~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      |.+.+|++|.+++|=.= .+.+.+ -++..      =.+|+++.+++.++    +++|.+|++.++++  +.+.+  ...
T Consensus       232 l~~~~h~~~al~~v~aDplaL~LL-~pPGe------~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~--~~R~m--PGR  300 (450)
T COG0403         232 LIEAAHSAGALVIVAADPLALGLL-KPPGE------FGADIVVGSAQRFGVPMGFGGPHAGYFAVKDE--FKRQM--PGR  300 (450)
T ss_pred             HHHHHhhcCCEEEEEechhHhhcc-CCccc------cCCceEEecCcccCCCcCCCCcceeeeeEhHh--HhhcC--CCc
Confidence            99999999998776541 122222 22222      14599999998862    33456777777543  22211  111


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcc---ccccccccccc-cHHHHHHHHHHhhHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI---QHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~  255 (367)
                      .++.....  ...+.|++.             +..    -.++|   +.-...|++.. .+....+++-.+|.+|+.++.
T Consensus       301 lVG~S~D~--~G~~A~rLa-------------LQT----REQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA  361 (450)
T COG0403         301 LVGVSVDA--AGKRAFRLA-------------LQT----REQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIA  361 (450)
T ss_pred             eeeeeecC--CCCchhhhh-------------HHH----HHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            11111100  111222110             000    00011   00112222211 223333445568999999999


Q ss_pred             HHHHHHHHHHHHHhcCCC-CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCH
Q psy3048         256 RKHISLAKKFADLVEKDD-RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~-g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~  334 (367)
                      ++.++++.++.++|+++. |+++.....+..+.++++.  .....+.++.+..|. -+...  .. ..+=+++ .-.+++
T Consensus       362 ~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~--~~~~~l~~~~~~~G~-~L~~~--~~-~~~~ia~-tEt~t~  434 (450)
T COG0403         362 ERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPE--EVAEALLAAAIAGGI-NLRRV--DA-DTVLIAL-TETTTK  434 (450)
T ss_pred             HHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecch--hHHHHHHHHHHhcCC-ceeee--cC-CceEEEe-ecccCH
Confidence            999999999999999764 6998877788888888753  456677777777773 22211  11 1344544 456779


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQ  347 (367)
Q Consensus       335 edid~li~~l~~~  347 (367)
                      +||+.+++++...
T Consensus       435 ~~i~~l~~~~~~~  447 (450)
T COG0403         435 EDIDALVAAFGGV  447 (450)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998764

>PLN02624 ornithine-delta-aminotransferase

Probab=99.50  E-value=3.3e-11  Score=119.07  Aligned_cols=227  Identities=13%  Similarity=0.015  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |++.|++.++..   +....+|++..+.+++|.+.|    +++|.++|++||+++++|++|.+.......+.....++ .
T Consensus       210 d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i-~  285 (474)
T PLN02624        210 DLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV-R  285 (474)
T ss_pred             CHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC-C
Confidence            789999988642   223467888888889999877    99999999999999999999985432221111111233 3


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++++  |.++++ ..+|+++.++ +.... +.  +..  ..                                    
T Consensus       286 pDiv~ls--K~lggG~~pigav~~~~-~i~~~-~~--~~~--~~------------------------------------  321 (474)
T PLN02624        286 PDVVILG--KALGGGVIPVSAVLADK-DVMLC-IK--PGE--HG------------------------------------  321 (474)
T ss_pred             CCEEEec--ccccCCCCcceeeeecH-HHHhH-hc--cCC--cC------------------------------------
Confidence            5888874  888766 4577777643 22211 10  000  00                                    


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CC-eEEeCCCCceeEEEEEcCC--
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DR-FELVCPPSMGLVCFRLKGD--  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g-~~~~~~~~~~~v~f~~~~~--  293 (367)
                            .+-.+.........++|+.+..++   +.++..++.+++++.|+++    +. +.-+. +...++.+.+...  
T Consensus       322 ------~T~~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr-g~G~~~~i~l~~~~~  391 (474)
T PLN02624        322 ------STFGGNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFPKLIKEVR-GRGLLNAVVLNSPKL  391 (474)
T ss_pred             ------CCCCCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEE-eeEEEEEEEecCCCc
Confidence                  000111122334444455443333   3345556666666666553    21 21111 1122333334321  


Q ss_pred             -chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       294 -~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                       .....++.+.|.++|+ ++.+.   +..++|+++ +..++++||+.+++.|++++++...+.
T Consensus       392 ~~~~a~~~~~~L~e~GV-~v~p~---~~~~lR~~p-~l~~t~e~id~~l~~L~~~l~~~~~~~  449 (474)
T PLN02624        392 GPVSAYDVCLKLKERGL-LAKPT---HDTIIRLAP-PLSISEDELQECSKALSDVLEHDLPKL  449 (474)
T ss_pred             ChHHHHHHHHHHHhCCe-EEecC---CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence             1335678888988884 44432   456899965 567889999999999999888765444

>PLN02397 aspartate transaminase

Probab=99.49  E-value=4.8e-12  Score=123.57  Aligned_cols=255  Identities=16%  Similarity=0.098  Sum_probs=156.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec-C-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++.++......++..|++++.++. + +++.+|++.+++.+.+.+.   ..++++++.++||||.+   +.+++
T Consensus       142 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~---~~~~i~~~~P~NPTG~v~s~e~l~~  218 (423)
T PLN02397        142 GSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPD---GSFVLLHACAHNPTGVDPTPEQWEQ  218 (423)
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHH
Confidence            346777888999999999999999999987 3 3578999999988864311   13678888899999998   56778


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhh--hhCCCCCcceeeeccccccc-cCCcceeEEE--ecchhhhhhccCC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWV--KNANHLTNTFFTD  177 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~--~~~~~~~~~~~~~  177 (367)
                      |+++|++||+++++|++|....+...  ....  .......--+++.+..|.++ .+..+|++++  ...+.+......-
T Consensus       219 i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~  298 (423)
T PLN02397        219 ISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQL  298 (423)
T ss_pred             HHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHH
Confidence            89999999999999999987654210  0111  11111111255667899998 5688999863  2332222110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH--------H
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL--------K  249 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~  249 (367)
                      .......                                           ..+..   .....++...+..        +
T Consensus       299 ~~~~~~~-------------------------------------------~~~~~---~~~q~~~~~~L~~~~~~~~~~~  332 (423)
T PLN02397        299 KLIARPM-------------------------------------------YSNPP---IHGASIVATILGDPELFSEWTK  332 (423)
T ss_pred             HHHHhcc-------------------------------------------cCCCc---HHHHHHHHHHhCCHHHHHHHHH
Confidence            0000000                                           00000   0111222221111        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC----eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEE
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDR----FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRF  325 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g----~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi  325 (367)
                      .+++..++..+..+.+.+.|+++ |    +++..|.....++.++      +.+++++|.++..+++.     +.+  |+
T Consensus       333 ~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l------~~~~~~~Ll~~~~V~v~-----~~~--Ri  398 (423)
T PLN02397        333 ELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGL------NKEQVDRMTKEYHIYMT-----RDG--RI  398 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCC------CHHHHHHHHHhCCEEEC-----CCC--eE
Confidence            25566777888889999999887 4    5544333222223222      24577888776556553     222  98


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         326 VVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       326 ~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +++.  .+++++++++++|+++++
T Consensus       399 ~~~~--~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        399 SMAG--LSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             EEee--CCHHHHHHHHHHHHHHHh
Confidence            7643  478999999999999875

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.49  E-value=1.7e-12  Score=124.31  Aligned_cols=226  Identities=17%  Similarity=0.189  Sum_probs=145.4

Q ss_pred             HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEeccc
Q psy3048          44 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY  122 (367)
Q Consensus        44 ~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~  122 (367)
                      ...+...|++++++++++...++       +++ .+      .+|.+.+++|+++.+.|+++|+++||++|  ++||+++
T Consensus       121 ~~~~~~~Gi~v~fvd~~~~~~~~-------l~~~~t------klv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~  185 (384)
T PRK06434        121 NKVLKTLGIHVDYIDTDRLNSLD-------FDPSNY------DLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATF  185 (384)
T ss_pred             HHHHHhcCcEEEEECCCChhhee-------ecCCCe------eEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCC
Confidence            35566789999999886322222       222 23      48888999999999999999999999998  5679998


Q ss_pred             ccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhh
Q psy3048         123 AGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNW  200 (367)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~  200 (367)
                      +.... ..+..      ..+|++++|+||++.++.+  .|+++.++++..++...    +....                
T Consensus       186 ~s~~~-~~pl~------~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~----~~~~~----------------  238 (384)
T PRK06434        186 ASPYN-QNPLD------LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE----RRKTL----------------  238 (384)
T ss_pred             CCccc-CCchh------cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH----HHHhc----------------
Confidence            65533 21211      1469999999999998765  55565655443332210    00000                


Q ss_pred             hcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-EeC
Q psy3048         201 LGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFE-LVC  279 (367)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~-~~~  279 (367)
                                                    +....  ++.+++...+.+-++.+++++.++++.+.+.|+.+|.++ +..
T Consensus       239 ------------------------------G~~~~--~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~y  286 (384)
T PRK06434        239 ------------------------------GSNPD--PIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYY  286 (384)
T ss_pred             ------------------------------CCCCC--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEEC
Confidence                                          00011  223334445677889999999999999999999999874 555


Q ss_pred             CC----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--EE----------C--CeeEEEEE
Q psy3048         280 PP----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--SF----------Q--GRPFLRFV  326 (367)
Q Consensus       280 ~~----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~~----------~--~~~~lRi~  326 (367)
                      |.          ..++++|.+.+ .+...++.++|.--  +       .....|.  .+          .  ..+.+|+|
T Consensus       287 Pgl~~~~~~~~g~g~~~sf~l~~-~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRls  365 (384)
T PRK06434        287 PDTEIGKKVLRGFGGMLSFELRS-MEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFS  365 (384)
T ss_pred             CChHHHHHhcCCCCceEEEEECC-HHHHHHHHHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEE
Confidence            42          35688999864 33445666665421  1       0111111  00          0  14689997


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +.     -||++.+++.|++.++
T Consensus       366 vG-----lEd~~dLi~dl~~Al~  383 (384)
T PRK06434        366 IG-----IEDIDDLIKDIENALS  383 (384)
T ss_pred             eC-----cCCHHHHHHHHHHHhc
Confidence            74     3688999999988764

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.49  E-value=1.3e-12  Score=120.54  Aligned_cols=256  Identities=13%  Similarity=0.063  Sum_probs=167.1

Q ss_pred             cCCcchhHHHHHHhCCc--ceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhc
Q psy3048          36 SDQSNSSVEKSAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEY  112 (367)
Q Consensus        36 s~~~H~s~~~~~~~~g~--~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~  112 (367)
                      +.-+|.+.-....+.|.  +++..+++ +++.+|.|++++...+..     |++|+.-  .+..-...|++++.+||++.
T Consensus       121 ~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k-----PK~ii~G--~SaY~r~id~~~~reIad~V  193 (413)
T COG0112         121 SHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK-----PKLIIAG--GSAYSRPIDFKRFREIADEV  193 (413)
T ss_pred             CCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC-----CCEEEEC--ccccccccCHHHHHHHHHHh
Confidence            34455554433334444  45556666 569999999999988765     6666544  44455667899999999999


Q ss_pred             CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQS  192 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  192 (367)
                      |+++.+|.||=.+.+....+..   .+..||+++.+.||.|.+|.| |++++++.+..++.-    ..++++.+      
T Consensus       194 GA~L~~DmAHiaGLVA~G~~p~---P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin----~aVFPg~q------  259 (413)
T COG0112         194 GAYLMVDMAHVAGLIAGGVHPN---PLPHADVVTTTTHKTLRGPRG-GIILTNDEELAKKIN----SAVFPGLQ------  259 (413)
T ss_pred             CceEEehHHHHHHHHhcccCCC---CCCccceEeCCcccCCCCCCc-eEEEeccHHHHHHhh----hhcCCccC------
Confidence            9999999999877776555443   456789999999999998854 677776655444321    11222211      


Q ss_pred             CCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         193 PDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                                                           +++... ..+...++.....-++++..++..++++.|.+.|.+
T Consensus       260 -------------------------------------ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~  302 (413)
T COG0112         260 -------------------------------------GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE  302 (413)
T ss_pred             -------------------------------------CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence                                                 111111 123344566666778889999999999999999998


Q ss_pred             CCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeE---ECCeeEEEEEe---cCCCCCHHHHHHH
Q psy3048         272 DDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KAS---FQGRPFLRFVV---TSPETNQCDVAFA  340 (367)
Q Consensus       272 ~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~---~~~~~~lRi~~---~~~~~~~edid~l  340 (367)
                      . |++++.. .+.+++...+...+...++..+.|.+.++ .+-    |.+   ...+..+|+..   +.....++|++.+
T Consensus       303 ~-G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~I-t~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~I  380 (413)
T COG0112         303 R-GFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGI-TVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEI  380 (413)
T ss_pred             c-CCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCE-eeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHH
Confidence            5 9998863 35667776665322223444455555553 332    111   22345689843   3344567899998


Q ss_pred             HHHHHHHHHHh
Q psy3048         341 WNEISHQSSEM  351 (367)
Q Consensus       341 i~~l~~~~~~~  351 (367)
                      .+.|.++++..
T Consensus       381 a~~I~~vl~~~  391 (413)
T COG0112         381 ADLIADVLDGL  391 (413)
T ss_pred             HHHHHHHHhcc
Confidence            88888877653

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.48  E-value=1.1e-11  Score=120.94  Aligned_cols=225  Identities=13%  Similarity=0.097  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-CCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++|++.+++..   .....|++.- .....|..-    .+++|.++|++||+++++|++|.++......+.....++ .
T Consensus       186 ~~~l~~~l~~~~---~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v-~  261 (423)
T PRK05964        186 LDALEALLEKHA---GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGV-S  261 (423)
T ss_pred             HHHHHHHHHhCC---CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCC-C
Confidence            788888886432   1233444443 244456553    499999999999999999999965432221111112233 3


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccCC---ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD---RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~---~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      .|+++++  |+++++ ..+|+++.++ +... .+...   ..++...                                 
T Consensus       262 pDi~~~~--K~l~gG~~p~~av~~~~-~i~~-~~~~~~~~~~~~~~~---------------------------------  304 (423)
T PRK05964        262 PDIMCLS--KGLTGGYLPLAATLCTA-EIFE-AFYSDDRAKAFMHSP---------------------------------  304 (423)
T ss_pred             CCeeeee--hhhhcCcccceEEEEcH-HHHH-hhhcCCcccccccCC---------------------------------
Confidence            5877664  999876 4677766643 3222 11100   0000000                                 


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-C-CceeEEEEEcCCc-
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-P-SMGLVCFRLKGDN-  294 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~-~~~~v~f~~~~~~-  294 (367)
                               +. .+......+..++++.+..+   ++.++..++.+++.+.|+++.++..+.+ . ...++.+.+.... 
T Consensus       305 ---------T~-~~np~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~  371 (423)
T PRK05964        305 ---------SY-TANPLACAAANASLDLFEDE---PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL  371 (423)
T ss_pred             ---------CC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc
Confidence                     00 01112223344445544332   3556788888888888876533322221 1 2344456664422 


Q ss_pred             -hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         295 -DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       295 -~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                       .....+.+.|.++|.+ +.+.   + ..+|+++ +..+|++|||+++++|+++++++
T Consensus       372 ~~~~~~l~~~l~~~Gv~-v~~~---~-~~lR~~p-~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        372 ERDGPALRAFALERGVL-LRPL---G-NTIYLMP-PYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             hhHHHHHHHHHHHCCeE-EEec---C-CEEEEeC-CcccCHHHHHHHHHHHHHHHhhC
Confidence             2356788889999954 4332   2 4799964 67789999999999999998763

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.48  E-value=1.2e-11  Score=119.45  Aligned_cols=218  Identities=12%  Similarity=0.039  Sum_probs=123.7

Q ss_pred             cCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          65 LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        65 ~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      .|++++++++++.+      .+|++...++++|..    +++++|.++|++||+++++|++|+++......+.....++ 
T Consensus       163 ~d~~~l~~~l~~~~------~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-  235 (389)
T PRK01278        163 GDIEALKAAITPNT------AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGV-  235 (389)
T ss_pred             CCHHHHHHhhCCCe------EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCC-
Confidence            58999999986543      477777666667743    5899999999999999999999986433221111111123 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|.+  +..|.+.+....|+++.++. .. +.+.       ....     .                            
T Consensus       236 ~pdi~--t~sK~l~~G~~ig~~~~~~~-~~-~~~~-------~~~~-----~----------------------------  271 (389)
T PRK01278        236 TPDIM--AVAKGIGGGFPLGACLATEE-AA-KGMT-------PGTH-----G----------------------------  271 (389)
T ss_pred             CCCEE--EEehhccCCcceEEEEEcHH-HH-hccC-------CCCC-----C----------------------------
Confidence            24654  45788875556888777532 22 1110       0000     0                            


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcCCchH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKGDNDL  296 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~~~~~  296 (367)
                           .+. ++..+.+.+..++++.+..+.   ..++..++.++++++|++    .+++.....+...++.+.+..   .
T Consensus       272 -----~t~-~~~~~~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~---~  339 (389)
T PRK01278        272 -----STY-GGNPLAMAVGNAVLDVILAPG---FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV---P  339 (389)
T ss_pred             -----CCC-CccHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEec---C
Confidence                 000 011122233344455443222   334455555566555544    322211111222233344422   2


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ..++.+.|.++|++ +.+.   +..++|+++ ....+++|++++++.|++++++
T Consensus       340 ~~~~~~~l~~~GV~-~~p~---~~~~lR~~p-~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        340 NRDLVQALRDEGLL-TVGA---GDNVVRLLP-PLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             HHHHHHHHHHCCeE-Eeec---CCCEEEEeC-CcccCHHHHHHHHHHHHHHHHh
Confidence            56888899989854 4332   346899965 3456799999999999998764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.48  E-value=2.9e-11  Score=117.46  Aligned_cols=269  Identities=13%  Similarity=0.126  Sum_probs=152.0

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCC------------cceEEEecCCCCCcCHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDA   69 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~~~~d~~~   69 (367)
                      .|+++||.+...+.          +..++.+|..+...|-+...+....|            .+++.++.+     |+++
T Consensus       112 ~a~klar~~~~~~~----------~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~  176 (403)
T PRK05093        112 AAFKLARRYACDRH----------GPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAA  176 (403)
T ss_pred             HHHHHHHHHHhhcC----------CCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHH
Confidence            36788888765221          11235566677777877665544321            223444433     7899


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccc-cCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcce
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCA-FDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS  144 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~-i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~  144 (367)
                      +++.+.+.+      .+|++. +.+++|. +.|    +++|.++|++||+++++|++|++.............++ ..|+
T Consensus       177 l~~~l~~~~------aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi  248 (403)
T PRK05093        177 VKAVIDDHT------CAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGV-TPDI  248 (403)
T ss_pred             HHHHhcCCe------EEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCCE
Confidence            998886443      456666 4555544 433    99999999999999999999986433221111111122 2365


Q ss_pred             eeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc
Q psy3048         145 FAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ  224 (367)
Q Consensus       145 ~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (367)
                      .  +..|.+++...+|+++.++.  +.+.+..   ..    .   .                                  
T Consensus       249 ~--s~sK~l~~G~rig~vv~~~~--i~~~l~~---~~----~---~----------------------------------  280 (403)
T PRK05093        249 L--TSAKALGGGFPIGAMLTTAE--IASHFKV---GT----H---G----------------------------------  280 (403)
T ss_pred             E--EecccccCCcceEEEEEcHH--HHhhcCC---CC----C---C----------------------------------
Confidence            4  44699886566888887432  2111110   00    0   0                                  


Q ss_pred             cccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeC-CCC-ceeEEEEEcCC-chHHHHH
Q psy3048         225 HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVC-PPS-MGLVCFRLKGD-NDLTNQL  300 (367)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~-~~~-~~~v~f~~~~~-~~~~~~l  300 (367)
                       .+. .+....+....++|+.+..   .+..++.+++.+++.+.|+++. .+.++. .+. ...+.+.++.. .....++
T Consensus       281 -~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~  355 (403)
T PRK05093        281 -STY-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDF  355 (403)
T ss_pred             -CCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHH
Confidence             000 0111112233344444322   2445677788888888887752 111221 222 23344455331 1245688


Q ss_pred             HHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       301 ~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ++.|.++|. ++.+   .+..++|++++ ...+++|++.+++.|+++++++
T Consensus       356 ~~~l~~~Gv-~v~~---~g~~~lRl~~~-~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        356 LNAAAEEGV-MVLV---AGPDVLRFAPS-LVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             HHHHHHCCe-EEec---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence            899999984 4433   24468999653 4457999999999999988654

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.48  E-value=1.9e-13  Score=115.48  Aligned_cols=127  Identities=26%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             ceEEEecCCcchhHH-HHHHhCCcceEEEecCCCCCcCHH--HHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVE-KSAIIGDVPVRQLRSDDNGVLRGD--ALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~-~~~~~~g~~v~~v~~~~~~~~d~~--~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +..|++++..|.+.. ..+...|++++.++.++++..+.+  .+++...     ...|.+++++++++++|...|+++|.
T Consensus        41 ~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~  115 (170)
T cd01494          41 GDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIR  115 (170)
T ss_pred             CCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHH
Confidence            445777888999988 778889999999998654433332  4433221     23367899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEe
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVK  165 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~  165 (367)
                      ++|+++|+++++|++|+++.........   ....+|+++.++|||+++ +|+|+++++
T Consensus       116 ~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~~~~d~~~~s~~K~~~~-~~~G~l~~~  170 (170)
T cd01494         116 KIAKEYGILLLVDAASAGGASPAPGVLI---PEGGADVVTFSLHKNLGG-EGGGVVIVK  170 (170)
T ss_pred             HHHHHcCCEEEEeccccccccccccccc---ccccCCEEEEEcccccCC-CceEEEEeC
Confidence            9999999999999999887665422111   123469999999999998 799999874

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.47  E-value=1.9e-11  Score=116.89  Aligned_cols=247  Identities=12%  Similarity=0.071  Sum_probs=152.7

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCC-----cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGV-----LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~-----~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .|++.+.++..+...++..|++++.++.+.++.     .+++++++... .      +.+++++.++|+||.+-+.++|.
T Consensus        99 ~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~l~nP~NPTG~~~~~~~l~  171 (360)
T PRK07392         99 AVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLT-P------NDGLLLNNPHNPTGKLWSREAIL  171 (360)
T ss_pred             eEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhcc-C------CCEEEEeCCCCCCCCCcCHHHHH
Confidence            567788899999999999999999999864432     45555554321 1      35888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++++++++ +++|++|..+.....  .....+...++ -+++.+..|.++ ....+|+++... +.+........     
T Consensus       172 ~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~~v~~~-~~~~~~~~~~~-----  243 (360)
T PRK07392        172 PLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPN-LIILRSLTKFYSLPGLRLGYAIAHP-DRLQRWQQWRD-----  243 (360)
T ss_pred             HHHHHCCE-EEEECchhhhccCccccchHHHhhcCCC-EEEEEechhhhcCCchheeeeeCCH-HHHHHHHhhCC-----
Confidence            99999985 677999976543211  00001111111 356678899998 558899988743 33322110000     


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la  262 (367)
                                .+                               .      ...+...++...+.... .+...+...+..
T Consensus       244 ----------~~-------------------------------~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r  276 (360)
T PRK07392        244 ----------PW-------------------------------P------VNGLAAAAAIAALADRDFQQQTWAWLPPAR  276 (360)
T ss_pred             ----------CC-------------------------------C------CCHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence                      00                               0      01122222222222222 333344566777


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-EC--CeeEEEEEecCCCCCHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-FQ--GRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~edid  338 (367)
                      +++.+.|++++|+.+. ++..+.+.++++.   ...++.+++. +.|+ .+.++. +.  +.+++|+++..    .++.+
T Consensus       277 ~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~---~~~~l~~~ll~~~gv-~v~pg~~f~~~~~~~iRi~~~~----~~~~~  347 (360)
T PRK07392        277 EALFQGLASLPGLTPL-PSAANFLLVQSQG---SALQLQEKLLQQHRI-LIRDCLSFPELGDRYFRVAVRT----EAENQ  347 (360)
T ss_pred             HHHHHHHHhCCCcEEC-CCCCCEEEEEcCC---CHHHHHHHHHhhCCE-EEEeCCCCCCCCCCEEEEEeCC----HHHHH
Confidence            8888999888888764 3445555555532   3567887765 4564 444443 22  34699997753    56678


Q ss_pred             HHHHHHHHHHH
Q psy3048         339 FAWNEISHQSS  349 (367)
Q Consensus       339 ~li~~l~~~~~  349 (367)
                      ++.++|+++..
T Consensus       348 ~l~~al~~~~~  358 (360)
T PRK07392        348 RLLEALAAILA  358 (360)
T ss_pred             HHHHHHHHHhh
Confidence            88888887654

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.46  E-value=1.4e-11  Score=118.11  Aligned_cols=267  Identities=12%  Similarity=0.134  Sum_probs=161.9

Q ss_pred             cCCcchhHHHH-HHhCCcceEEEecC----------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc---C
Q psy3048          36 SDQSNSSVEKS-AIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF---D  100 (367)
Q Consensus        36 s~~~H~s~~~~-~~~~g~~v~~v~~~----------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i---~  100 (367)
                      +...|++...+ +...|+.++.++.+          .+|.+|+++|++++++.... ..+ +|+++...|.. |..   +
T Consensus       114 psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~-~~~-lV~~e~t~N~~GG~pvs~~  191 (450)
T TIGR02618       114 PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGAD-KIP-YICLAVTVNLAGGQPVSMA  191 (450)
T ss_pred             CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCc-ccC-ceEEEEecccCCCeeCCHH
Confidence            55788777776 67788866656432          35899999999999864321 122 44444445544 777   6


Q ss_pred             ChhhHHHHHhhcCcEEEEeccccccc-ccC--------h-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecchh
Q psy3048         101 NLEELGPICQEYNIWLHVDAAYAGSA-LLL--------P-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANH  169 (367)
Q Consensus       101 dl~~I~~l~~~~gi~l~vD~a~~~~~-~~~--------~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~  169 (367)
                      ++++|.++|++||+++|.|+|+..+. ++.        + ........ .+.+|.+++|+||-+.+|. .|++.+++++.
T Consensus       192 ~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~-GG~l~~~d~~l  270 (450)
T TIGR02618       192 NMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI-GGFLCMNDDEM  270 (450)
T ss_pred             HHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC-ceEEEeCCHHH
Confidence            78999999999999999999997732 221        0 11000011 3468999999999999986 45666688776


Q ss_pred             hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH
Q psy3048         170 LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK  249 (367)
Q Consensus       170 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (367)
                      +++.......|  .+..       .|                       |+       +. ++  ...++..+|...-. 
T Consensus       271 ~~k~r~~~~~~--eG~~-------ty-----------------------Gg-------la-~r--~~~ala~gL~e~~~-  307 (450)
T TIGR02618       271 FQSAKELVVVF--EGMP-------SY-----------------------GG-------LA-GR--DMEAMAIGIREAVD-  307 (450)
T ss_pred             HHHHHHHhhhc--CCcc-------cc-----------------------Cc-------hh-hh--hHHHHHHHHHHhhh-
Confidence            66543221122  1100       01                       00       00 00  11222223332211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC------chH-HHHHHHHHhcc-CcEEEEEeEE----
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD------NDL-TNQLYERLMSH-KQIYIIKASF----  317 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~------~~~-~~~l~~~L~~~-g~~~~~~~~~----  317 (367)
                        +...++....++||.+.|.+. |+.+..|+..+.|.+.....      .+. ...+.-.|..+ |+--+.-+.+    
T Consensus       308 --~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~  384 (450)
T TIGR02618       308 --YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGR  384 (450)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceeccc
Confidence              244556667899999999998 99987778888888764321      121 23555555443 3222221111    


Q ss_pred             ---------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         318 ---------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       318 ---------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                               ..-..+|+++...--|.+.+|.+.++|..+.++-
T Consensus       385 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  427 (450)
T TIGR02618       385 NNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR  427 (450)
T ss_pred             CCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence                     0135899987555556899999999999987753

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.46  E-value=1.6e-11  Score=116.39  Aligned_cols=238  Identities=10%  Similarity=0.046  Sum_probs=149.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++...|..+...++..|++++.++.++++.+|++++++++ +.+      .++++++++|+||.+-+.++|.++++
T Consensus        95 d~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~~~------~~v~~~~P~NPtG~~~~~~~l~~i~~  167 (337)
T PRK03967         95 KHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA-KNA------SAVFICSPNNPTGNLQPEEEILKVLE  167 (337)
T ss_pred             CeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc-cCC------CEEEEeCCCCCCCCCCCHHHHHHHHh
Confidence            35666778888787788889999999999877899999998764 223      36667899999999999999999995


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                       +|+++++|++|..+..  ...........+ -++..+..|.++ ....+|+++.. ++.+.........          
T Consensus       168 -~~~~ii~De~y~~~~~--~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~~-~~~i~~~~~~~~~----------  232 (337)
T PRK03967        168 -TGKPVVLDEAYAEFSG--KSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIAN-EEIIDALYRIKPP----------  232 (337)
T ss_pred             -cCCEEEEECchhhhcc--cchHHHHhhCCC-EEEEecchHhhcchhhhheeeecC-HHHHHHHHhhcCC----------
Confidence             7999999999975421  111111111111 356678999998 44778998874 3333222111000          


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHH
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~~l~~~  268 (367)
                                                          |..      ..+...++...+ ..+.+.+..++..+..+.+.+.
T Consensus       233 ------------------------------------~~~------~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~  270 (337)
T PRK03967        233 ------------------------------------FSL------NILTMKIVRLALDHYDLIEERIDYIIKERERVRRE  270 (337)
T ss_pred             ------------------------------------CCC------CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence                                                000      011222222111 1223444445556666777777


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      |.+.     ..++..+.+++++        .+.+.|.++|+ .+.+......+++|+++.    +.++.++++++|+++.
T Consensus       271 L~~~-----~~~~~~~~~~~~~--------~~~~~l~~~gi-~v~~~~~~~~~~~Ri~~~----~~~~~~~l~~~l~~~~  332 (337)
T PRK03967        271 LGEY-----AYPSDANFLLLKL--------DAYDYLLENGI-VVRKLSGRLEGHIRVTVG----KREENDEFIKALKEIK  332 (337)
T ss_pred             hccC-----cCCCCCcEEEEhH--------HHHHHHHHCCE-EEEeCCCCCCCeEEEecC----CHHHHHHHHHHHHHHH
Confidence            7654     1234444444432        26677777884 443322233569999764    4788999999998886


Q ss_pred             HH
Q psy3048         349 SE  350 (367)
Q Consensus       349 ~~  350 (367)
                      +.
T Consensus       333 ~~  334 (337)
T PRK03967        333 EG  334 (337)
T ss_pred             Hh
Confidence            54

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.45  E-value=1.7e-11  Score=117.99  Aligned_cols=213  Identities=13%  Similarity=0.104  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+.+.+      .+|+++.+++++|..    +++++|.++|++||+++++|++|++.............++ .
T Consensus       159 d~~~l~~~~~~~~------~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~-~  231 (379)
T TIGR00707       159 DIESLKKAIDDET------AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI-E  231 (379)
T ss_pred             CHHHHHHHhhhCe------eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCC-C
Confidence            8999999987644      466677766666754    2489999999999999999999975322111111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++  ..|.+.++..+|+++.. ++.... +.       ....     ...                           
T Consensus       232 ~d~~t--~sK~~~~G~riG~~~~~-~~~~~~-~~-------~~~~-----~~~---------------------------  268 (379)
T TIGR00707       232 PDIIT--LAKGLGGGVPIGATLAK-EEVAEA-FT-------PGDH-----GST---------------------------  268 (379)
T ss_pred             CCEEE--EcccccCCcccEEEEEc-HHHHhh-hc-------CCCC-----CCC---------------------------
Confidence            36554  57999966778888774 332221 10       0000     000                           


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe-C--CCCceeEEEEEcCCchHHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELV-C--PPSMGLVCFRLKGDNDLTN  298 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~-~--~~~~~~v~f~~~~~~~~~~  298 (367)
                          +.   ...+...+..++|+.+..   .++.++.+++.++++++|+++ +.... .  ++....+.+.++. .  ..
T Consensus       269 ----~~---~~~~~~~aa~aaL~~~~~---~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~-~--~~  334 (379)
T TIGR00707       269 ----FG---GNPLACAAALAVLEVIEK---ERLLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEA-P--CK  334 (379)
T ss_pred             ----CC---CCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecC-c--HH
Confidence                00   111223344445554432   245566777888888877664 22211 1  1233456666643 2  56


Q ss_pred             HHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       299 ~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ++.+.|.++|+. +.+   .+..++|+++ +...++++++++++.|+++
T Consensus       335 ~~~~~l~~~Gv~-v~~---~~~~~lRi~~-~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       335 DIVKKALEKGLL-VNC---AGPKVLRFLP-PLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             HHHHHHHHCCcE-Eee---CCCCEEEEEC-CCcCCHHHHHHHHHHHHHh
Confidence            888899999854 433   2346899965 4556799999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK08637 hypothetical protein; Provisional

Probab=99.45  E-value=2.4e-11  Score=117.41  Aligned_cols=266  Identities=12%  Similarity=0.037  Sum_probs=148.9

Q ss_pred             ceEEEecCCcchhHHHHH-HhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSA-IIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~-~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++..+...+ ...|++++.++.. +++.+|+++|+++++...+.  ...+++++.++||||.+   +.+++
T Consensus        93 gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~  170 (388)
T PRK08637         93 GDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATA  170 (388)
T ss_pred             CCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHH
Confidence            345677777887777764 4589999999983 55678999999998721111  12467788899999988   45677


Q ss_pred             HHHHHhh-----cCcEEEEecccccccccChhhhh---hhCCC-CCcceee-eccccc-cccCCcceeEEEec-----ch
Q psy3048         105 LGPICQE-----YNIWLHVDAAYAGSALLLPEYAH---LKRGL-EYVDSFA-FNAHKW-LLTNHDCSAMWVKN-----AN  168 (367)
Q Consensus       105 I~~l~~~-----~gi~l~vD~a~~~~~~~~~~~~~---~~~~~-~~~D~~~-~~~hK~-l~~p~g~g~l~~~~-----~~  168 (367)
                      |+++|++     ||+++++|++|....+.......   .+.+. +++.++. .+..|. +.....+|++++..     +.
T Consensus       171 l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~  250 (388)
T PRK08637        171 IVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQT  250 (388)
T ss_pred             HHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHH
Confidence            7777775     99999999999765442211111   11111 1222332 367775 55557899988743     22


Q ss_pred             hhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH
Q psy3048         169 HLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL  248 (367)
Q Consensus       169 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (367)
                      ...........++.....                                           ..   ..+...++...+..
T Consensus       251 l~~~~~~~~~~~~~~~~~-------------------------------------------~~---s~~~q~a~~~~l~~  284 (388)
T PRK08637        251 VKEALEKKVKGLIRSNIS-------------------------------------------NG---PHPSQSAVLRALNS  284 (388)
T ss_pred             HHHHHHHHHHHHhhcccC-------------------------------------------CC---CcHHHHHHHHHhCC
Confidence            221110000000000000                                           00   01222222222222


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEECCe
Q psy3048         249 KGL----QAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASFQGR  320 (367)
Q Consensus       249 ~g~----~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~  320 (367)
                      ..+    .+......+..+.+.+.|++.   +++.+..+.....++++++  .....++.+.|.+ +|+ .+.+   .+.
T Consensus       285 ~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~--~~~~~~l~~~l~~~~gv-~~~~---~~~  358 (388)
T PRK08637        285 PEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK--GVDAEELRVHLLEKYGI-GTIA---LNE  358 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCC--hHHHHHHHHHHhhhcce-EEEe---ccC
Confidence            222    222233444445556666554   2455544333333444554  2235688888864 564 3322   245


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .++|++++.  .+.++++..++.|.++++.+
T Consensus       359 ~~iRi~~~~--~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        359 TDLRIAFSC--VEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             CceEEEeec--CCHHHHHHHHHHHHHHHHhc
Confidence            689997743  46899999999999887654

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.45  E-value=7.9e-12  Score=121.91  Aligned_cols=126  Identities=13%  Similarity=0.012  Sum_probs=89.5

Q ss_pred             CceEEEecCCcch------hHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCc--cc--c
Q psy3048          29 SRLVAYASDQSNS------SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTG--TC--A   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~------s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~--~G--~   98 (367)
                      +.-.|++++..|.      ++...++..|+++++++.+  ...++++++++++++|+      +|++++.+|+  .|  .
T Consensus       159 ~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~------lv~~~h~sN~~~~G~~~  230 (454)
T TIGR00474       159 KGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTA------LLLKVHTSNYRIVGFTE  230 (454)
T ss_pred             CcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCE------EEEEEccCcccccCCCC
Confidence            3446677776663      3444566789999999764  34589999999988774      7777777776  36  4


Q ss_pred             cCChhhHHHHHhhcCcEEEEecccccc------cccChh--hhhhhCCCCCcceeeeccccccccCCcceeEEEec
Q psy3048          99 FDNLEELGPICQEYNIWLHVDAAYAGS------ALLLPE--YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l~vD~a~~~~------~~~~~~--~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      +.|+++|+++||+||+++++|++.|..      .+....  ......   .+|++++|+|||+++| ++|+++.++
T Consensus       231 ~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~---GaDiv~fSg~K~LgGp-~~G~i~g~~  302 (454)
T TIGR00474       231 EVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAA---GVDLVTFSGDKLLGGP-QAGIIVGKK  302 (454)
T ss_pred             CCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHc---CCCEEEecCccccCCC-eEEEEEECH
Confidence            789999999999999999999864432      001100  011112   3699999999999988 578888764

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.45  E-value=7.1e-12  Score=121.95  Aligned_cols=259  Identities=12%  Similarity=0.050  Sum_probs=150.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcc-----------eEEEecCCC--CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVP-----------VRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~-----------v~~v~~~~~--~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      -.|++.+.++......++..|.+           ++.++++.+  +..|.++      +.      +.+|+++.++||||
T Consensus       123 d~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~~------~k~i~l~nP~NPTG  190 (409)
T PRK07590        123 NTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------EK------VDIIYLCFPNNPTG  190 (409)
T ss_pred             CEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------cC------ceEEEEeCCCCCcC
Confidence            45666788999888889988986           888888633  3333221      22      35777789999999


Q ss_pred             cc---CChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhh
Q psy3048          98 AF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLT  171 (367)
Q Consensus        98 ~i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~  171 (367)
                      .+   +.+++|+++|++||+++++|++|+-..+.......  .+.+....-++..+..|.++ ....+|+++... ..+.
T Consensus       191 ~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~-~li~  269 (409)
T PRK07590        191 TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPK-ELKG  269 (409)
T ss_pred             CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCH-HHhh
Confidence            98   45677888899999999999999764332111000  01111111355678999996 557788888743 2222


Q ss_pred             hhccCC-----ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh
Q psy3048         172 NTFFTD-----RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY  246 (367)
Q Consensus       172 ~~~~~~-----~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (367)
                      ......     ..+.....                                      ..+  .....+....+..++...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~--~~~s~~~q~a~~~~l~~~  309 (409)
T PRK07590        270 KTSDGEGVSLNSLWNRRQS--------------------------------------TKF--NGVSYIVQRAAEAVYSPE  309 (409)
T ss_pred             hccccchhhhHHHHHHHHh--------------------------------------hcc--cCcCHHHHHHHHHHhcCC
Confidence            100000     00000000                                      000  000001111121222211


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E--CCeeEE
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F--QGRPFL  323 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~l  323 (367)
                      +...+++..++..+..+++.+.|+++ |+++..+.....++++++. .....++.+.+.++..+.+.++. +  .+..++
T Consensus       310 ~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~i  387 (409)
T PRK07590        310 GKAQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPD-GMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYF  387 (409)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCC-CCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEE
Confidence            23455666777778888888999887 6776544455667777754 22346777777755334444432 2  234699


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~  347 (367)
                      |+++.   .++++++..++.|.++
T Consensus       388 Ri~~~---~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        388 RLSAF---GSRENVLEAMERIKKA  408 (409)
T ss_pred             EEEcc---CCHHHHHHHHHHHHhh
Confidence            99642   3688999999888764

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.43  E-value=1.7e-11  Score=119.01  Aligned_cols=256  Identities=12%  Similarity=-0.009  Sum_probs=148.2

Q ss_pred             eEEEecCCcchhHHHHHHhCCc-----------ceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDV-----------PVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~-----------~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      -.|++.+.++..+...++..|+           +++.++.++  ++..+.+.   .  +.      +.+|++++++|+||
T Consensus       119 d~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~--~~------~~~i~l~nP~NPTG  187 (402)
T TIGR03542       119 NTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE---E--PK------IDIIYLCSPNNPTG  187 (402)
T ss_pred             CEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc---c--CC------ceEEEEeCCCCCCC
Confidence            3466778888888888888999           888888753  34444221   1  12      34777789999999


Q ss_pred             ccCC---hhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhh
Q psy3048          98 AFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLT  171 (367)
Q Consensus        98 ~i~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~  171 (367)
                      .+-+   +++|+++|++||+++++|++|+-+.........  ........-+++.+..|.++ ....+|+++.... .+.
T Consensus       188 ~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~-l~~  266 (402)
T TIGR03542       188 TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKE-LTY  266 (402)
T ss_pred             ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHH-Hhh
Confidence            9965   888999999999999999999754331110000  01111111355678899996 4477888887432 220


Q ss_pred             hhc-cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---
Q psy3048         172 NTF-FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---  247 (367)
Q Consensus       172 ~~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---  247 (367)
                      ... .....+......                                        ....   ...+...++...+.   
T Consensus       267 ~~~~~~~~~~~~~~~~----------------------------------------~~~~---~s~~~q~~~~~~l~~~~  303 (402)
T TIGR03542       267 ADGHSVIQDWERRQCT----------------------------------------KFNG---ASYPVQRAAEAAYAGEG  303 (402)
T ss_pred             cchhhHHHHHHHHhhh----------------------------------------cccC---CCHHHHHHHHHHHcCcc
Confidence            000 000000000000                                        0000   00112122222221   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E--CCeeEE
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F--QGRPFL  323 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~--~~~~~l  323 (367)
                      ...+.+..+...+..+++.+.|++. |+++..+...+.++++++. .....++.+.|.+ .|+ .+.++. +  .+..++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~-~~~~~~l~~~l~~~~gv-~v~pg~~f~~~~~~~i  380 (402)
T TIGR03542       304 LQPILEAISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPE-GISSWDFFDFLLYQYHV-VGTPGSGFGPSGEGFV  380 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCC-CCCHHHHHHHHHHhCCE-EEeCchhhCCCCCCEE
Confidence            1224444555667778888888876 6776544455677777754 2235678888775 464 444432 2  235799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~  347 (367)
                      |+++..   ++++++..++.|+++
T Consensus       381 Ris~~~---~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       381 RFSAFG---KRENIVEACERIKEA  401 (402)
T ss_pred             EEEecC---CHHHHHHHHHHHHhh
Confidence            997532   688899988888764

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.43  E-value=2.7e-11  Score=116.44  Aligned_cols=267  Identities=11%  Similarity=0.100  Sum_probs=158.7

Q ss_pred             cCCcchhHHHH-HHhCCcceEEEec----------CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc---C
Q psy3048          36 SDQSNSSVEKS-AIIGDVPVRQLRS----------DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF---D  100 (367)
Q Consensus        36 s~~~H~s~~~~-~~~~g~~v~~v~~----------~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i---~  100 (367)
                      +...|+....+ +...|+..+-+..          ..+|.+|+++|++++.+....  ...+++++...|.. |+.   +
T Consensus       121 p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~--~~~lV~a~itvn~~GGqpvs~~  198 (460)
T PRK13237        121 PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAE--NIAYICLAVTVNLAGGQPVSMA  198 (460)
T ss_pred             CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCC--ccCceEEEEecccCCCeeCCHH
Confidence            66677777666 6677875444421          246999999999999864321  11234444445666 554   4


Q ss_pred             ChhhHHHHHhhcCcEEEEecccccccc-cC----hhhhhh-----hCC-CCCcceeeeccccccccCCcceeEEEecchh
Q psy3048         101 NLEELGPICQEYNIWLHVDAAYAGSAL-LL----PEYAHL-----KRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANH  169 (367)
Q Consensus       101 dl~~I~~l~~~~gi~l~vD~a~~~~~~-~~----~~~~~~-----~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~  169 (367)
                      ++++|.++|++||+++|.|+|+..+.. +.    +.+...     ... .+.+|.+++|+||.+.+|. .|++.+++++.
T Consensus       199 ~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL  277 (460)
T PRK13237        199 NMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEEL  277 (460)
T ss_pred             hHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHH
Confidence            789999999999999999999976522 11    011110     001 2468999999999999875 57788888776


Q ss_pred             hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH
Q psy3048         170 LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK  249 (367)
Q Consensus       170 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (367)
                      +++.......|-  +       -+.|                       |       .+ .++..  .++...|...-. 
T Consensus       278 ~~~~r~~~~~~e--G-------~~ty-----------------------g-------g~-~grd~--~alAvgl~E~~~-  314 (460)
T PRK13237        278 FDEAKELVVVYE--G-------MPSY-----------------------G-------GM-AGRDM--EAMAIGIEESVQ-  314 (460)
T ss_pred             HHHHHHhccccC--C-------CcCC-----------------------C-------Ch-hhhHH--HHHHhHHHhhch-
Confidence            655422111110  0       0011                       0       00 01111  122222332211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcC------Cch-HHHHHHHHHhcc-CcEEEEEeEE----
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKG------DND-LTNQLYERLMSH-KQIYIIKASF----  317 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~------~~~-~~~~l~~~L~~~-g~~~~~~~~~----  317 (367)
                        .+..++....++||.++|.+- |+.+..|...+-+.+....      ..+ -...+.-.|..+ |+--+.-+.+    
T Consensus       315 --~~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~  391 (460)
T PRK13237        315 --YEYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGR  391 (460)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceeccc
Confidence              266667788899999999885 8999887655666553211      012 123555555443 3222211111    


Q ss_pred             ---------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         318 ---------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       318 ---------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                               ..-..+|+++...--|.+.+|.++++|..+.++-
T Consensus       392 ~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~  434 (460)
T PRK13237        392 DPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR  434 (460)
T ss_pred             CCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence                     0135899987555556899999999999987753

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.43  E-value=5.8e-11  Score=113.45  Aligned_cols=243  Identities=12%  Similarity=0.000  Sum_probs=148.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .|++.+.++......++..|.+++.++++  +++.++.++++++.. .+      .++++++++|+||.+-+.+++.+++
T Consensus       108 ~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~------k~i~l~~p~NPTG~~~s~~~~~~l~  180 (357)
T PRK14809        108 TVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD-GE------RIVYLTSPHNPTGSEIPLDEVEALA  180 (357)
T ss_pred             EEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-CC------cEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            45666677666666777889999988885  357778888777652 22      4777889999999998877777776


Q ss_pred             hhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         110 QEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       110 ~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +..  ++++++|++|+......... ......++ -+++.+..|.++ ....+|+++..+ +.++.......        
T Consensus       181 ~~~~~~~~iI~De~y~~~~~~~~~~-~~~~~~~~-vi~~~SfSK~~~~~GlRiG~~~~~~-~~~~~~~~~~~--------  249 (357)
T PRK14809        181 ERTDEETLVVVDEAYGEFAERPSAV-ALVEERDD-VAVLRTFSKAYGLAGLRLGYAVVPE-EWADAYARVNT--------  249 (357)
T ss_pred             HhCccCcEEEEechhhhccCCchhH-HHHhhCCC-EEEEecchhHhcCcchhheeeecCH-HHHHHHHHhCC--------
Confidence            643  78999999997643321111 11111111 255667899997 457788888743 33332211000        


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l  265 (367)
                             .+                               .      ...+...+++..+. .+.+++..+...+..+++
T Consensus       250 -------~~-------------------------------~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l  285 (357)
T PRK14809        250 -------PF-------------------------------A------ASELACRAGLAALDDDEHVERTVETARWAREYI  285 (357)
T ss_pred             -------CC-------------------------------C------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence                   00                               0      01122333333332 233555555666666777


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .+.|... .    .++..+.+++++.+    ..++.+.|.++|+....+..+....++|+++.    +.++++.++++|+
T Consensus       286 ~~~L~~~-~----~~~~g~f~~~~~~~----~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~----~~~~~~~~l~~L~  352 (357)
T PRK14809        286 REELDAP-T----WESAGNFVLAEVGD----ASAVAEAAQERGVIVRDCTSFGLPECIRITCG----TREETERAVEVLN  352 (357)
T ss_pred             HHHhcCc-c----CCCCCCEEEEECCC----HHHHHHHHHHCCEEEEECccCCCCCeEEEecC----CHHHHHHHHHHHH
Confidence            7777543 1    24455566666532    46788888878754333333333569999753    4789999999998


Q ss_pred             HHHH
Q psy3048         346 HQSS  349 (367)
Q Consensus       346 ~~~~  349 (367)
                      ++++
T Consensus       353 ~~l~  356 (357)
T PRK14809        353 EVLA  356 (357)
T ss_pred             HHhc
Confidence            8754

>PRK08354 putative aminotransferase; Provisional

Probab=99.43  E-value=2.4e-11  Score=113.89  Aligned_cols=116  Identities=10%  Similarity=-0.107  Sum_probs=86.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~  106 (367)
                      .-.|++.+.++..+...++..|++++.++      +|++.|++++++ +      .++++++|+|+||.+.   .+++|+
T Consensus        77 gd~vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~~-~------~~vi~~~P~NPTG~~~~~~~l~~l~  143 (311)
T PRK08354         77 DRKVIIPRHTYGEYERVARFFAARIIKGP------NDPEKLEELVER-N------SVVFFCNPNNPDGKFYNFKELKPLL  143 (311)
T ss_pred             CCeEEEeCCCcHHHHHHHHHcCCEEeecC------CCHHHHHHhhcC-C------CEEEEecCCCCCCCccCHHHHHHHH
Confidence            34577788999999999999999997653      478899887752 2      3688899999999985   467777


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEE
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWV  164 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~  164 (367)
                      ++|+++|+++++|++|+.+......     ..- .--+++.+..|.++ ....+|+++.
T Consensus       144 ~~a~~~~~~li~De~y~~f~~~~~~-----~~~-~~vi~~~S~SK~~~l~GlRiG~~v~  196 (311)
T PRK08354        144 DAVEDRNALLILDEAFIDFVKKPES-----PEG-ENIIKLRTFTKSYGLPGIRVGYVKG  196 (311)
T ss_pred             HHhhhcCcEEEEeCcchhccccccc-----cCC-CcEEEEeccHhhcCCccceeeeeee
Confidence            8889999999999999765442110     001 11456677899997 4467888776

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.43  E-value=3.1e-11  Score=114.03  Aligned_cols=238  Identities=13%  Similarity=-0.001  Sum_probs=146.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~  107 (367)
                      -.|++.+.++......++..|++++.|+.+        +++++++ .+      .+++++.|+||||.+-+   +++|++
T Consensus        87 d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~-~~------~~v~l~nP~NPTG~~~s~~~l~~l~~  151 (330)
T PRK05664         87 GRVGVLSPCYAEHAHAWRRAGHQVRELDEA--------EVEAALD-SL------DVLVVVNPNNPTGRRFDPARLLAWHA  151 (330)
T ss_pred             CEEEEcCCChHHHHHHHHHcCCeEEEechh--------hHhhhhc-CC------CEEEEeCCcCCCCCccCHHHHHHHHH
Confidence            356678889999999999999999998763        4555553 22      36788899999999955   566666


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +|+++|+++++|++|..+. ..+.... +..- .--+++.+..|.++ ....+|+++.. ++.+.........+      
T Consensus       152 ~~~~~~~~iI~DE~y~~~~-~~~s~~~-~~~~-~~vi~~~SfSK~~gl~GlRiG~~v~~-~~l~~~~~~~~~~~------  221 (330)
T PRK05664        152 RLAARGGWLVVDEAFMDNT-PQHSLAA-CAHR-PGLIVLRSFGKFFGLAGARLGFVLAE-PALLRALAELLGPW------  221 (330)
T ss_pred             HHHhcCCEEEEECCcccCC-Ccccccc-cccC-CCEEEEeeccccccCCCcceEEEEeC-HHHHHHHHHhcCCC------
Confidence            7789999999999986432 1111111 1111 11266777899997 55788998873 33333221110000      


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                              ..  +. .....+..+|..  ....++..++..+..+++.
T Consensus       222 ----------------------------------------~~--~~-~~~~~~~~~L~~--~~~~~~~~~~~~~~r~~l~  256 (330)
T PRK05664        222 ----------------------------------------TV--SG-PTRWLAQAALAD--TPWQRRQRERLLAASQRLA  256 (330)
T ss_pred             ----------------------------------------CC--CH-HHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHH
Confidence                                                    00  00 011122222321  1234555666777788889


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      +.|+++ |++.. ......+.++.+    ...++.+.|.++|+. +..  +....++|+++..   ++++.++++++|++
T Consensus       257 ~~L~~~-~~~~~-~~~~~f~~~~~~----~~~~~~~~l~~~gi~-v~~--f~~~~~iRis~~~---~~~~~~~l~~al~~  324 (330)
T PRK05664        257 ALLRRH-GLTPA-GGCALFQWVRTE----DAAALHEFLARRGIL-TRL--FEQPASLRFGLPA---DEADWARLDQALLA  324 (330)
T ss_pred             HHHHHC-CCccc-CCcceEEEEecC----CHHHHHHHHHHCCeE-EEE--CCCCCeEEEECCC---CHHHHHHHHHHHHH
Confidence            999886 55421 112233444432    256888888888854 332  2345699997643   57889999999998


Q ss_pred             HHHH
Q psy3048         347 QSSE  350 (367)
Q Consensus       347 ~~~~  350 (367)
                      +.++
T Consensus       325 ~~~~  328 (330)
T PRK05664        325 YRKE  328 (330)
T ss_pred             HHhh
Confidence            8765

>KOG0256|consensus

Probab=99.42  E-value=2.4e-11  Score=112.18  Aligned_cols=266  Identities=13%  Similarity=0.108  Sum_probs=166.1

Q ss_pred             cchhHHHHHHh-CCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHHHHHhhc
Q psy3048          39 SNSSVEKSAII-GDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELGPICQEY  112 (367)
Q Consensus        39 ~H~s~~~~~~~-~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~~l~~~~  112 (367)
                      -+..+..-+++ .|++++.|.+.  ++.++++++||+++++..+.+.....|+++.|+||.|...   .+..+.++|.++
T Consensus       179 yY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k  258 (471)
T KOG0256|consen  179 YYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK  258 (471)
T ss_pred             CCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc
Confidence            33333333333 57888888885  5689999999999999988888888999999999999985   455666677899


Q ss_pred             CcEEEEecccccccccChhhhhhhC---C---CCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKR---G---LEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~---~---~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++.+++|+.+++..+.-..+...+.   .   ...---++++..|=|+.| -..|++|..++....-+.....-++    
T Consensus       259 niHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~----  334 (471)
T KOG0256|consen  259 NIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGL----  334 (471)
T ss_pred             ceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccC----
Confidence            9999999999886664332222111   0   111235778889988887 5678888876653322110000000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                  ++..         +      -..+....+-..+..+-+++-.+|....-+|+
T Consensus       335 ----------------------------vSs~---------t------Q~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~  371 (471)
T KOG0256|consen  335 ----------------------------VSSQ---------T------QYLLASLLSDEEFTREYLRENNKRLRIRHRYI  371 (471)
T ss_pred             ----------------------------CcHH---------H------HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        0000         0      00011111222344455666667777778889


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEE-EEcC----Cc-hHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCF-RLKG----DN-DLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f-~~~~----~~-~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~ed  336 (367)
                      .+.|+++ |+.++. ...++.++ .+..    .. +-.-+|.+++..+-.+.++|+..   ..++++|+++.  ...++.
T Consensus       372 ~~gLk~l-gI~cl~-s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA--n~~~~t  447 (471)
T KOG0256|consen  372 VEGLKAL-GIPCLK-SNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA--NMSEET  447 (471)
T ss_pred             HhhHHhc-CCceee-cCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEec--cCCHHH
Confidence            9999997 888774 34555544 2211    11 11236777777773355655432   45789999764  345677


Q ss_pred             HHHHHHHHHHHHHHhhCCC
Q psy3048         337 VAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       337 id~li~~l~~~~~~~~~~~  355 (367)
                      ++-.+++|++++.+.....
T Consensus       448 ~~~am~Ri~~~~~~~~~~l  466 (471)
T KOG0256|consen  448 LEVAMRRLKQFLDSQVQPL  466 (471)
T ss_pred             HHHHHHHHHHHHHhhhccc
Confidence            7778899999888655443

>PRK05839 hypothetical protein; Provisional

Probab=99.42  E-value=1.9e-11  Score=117.48  Aligned_cols=246  Identities=12%  Similarity=0.033  Sum_probs=144.9

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      +.-.|++...++..+...+...|++++.++.+.  ++.+|.++.  .+ +.+      .+|++++++||||.+   +.++
T Consensus       108 ~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~-~~~------k~v~i~nP~NPTG~~~s~~~l~  178 (374)
T PRK05839        108 QNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL-QEV------DLVILNSPNNPTGRTLSLEELI  178 (374)
T ss_pred             CCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh-ccc------cEEEEeCCCCCcCcccCHHHHH
Confidence            345677778888888888999999999999863  355555433  22 222      477778999999998   4667


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhC--------CCCCcceeeecccccc-ccCCcceeEEEecchhhhhhc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--------GLEYVDSFAFNAHKWL-LTNHDCSAMWVKNANHLTNTF  174 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~--------~~~~~D~~~~~~hK~l-~~p~g~g~l~~~~~~~~~~~~  174 (367)
                      +|+++|++||+++++|++|+-..... .......        ..++ -+++.+..|.+ .....+|+++.. +.......
T Consensus       179 ~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~-vi~~~SfSK~~~~~GlRiG~ii~~-~~~~~~~~  255 (374)
T PRK05839        179 EWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKN-VLVINSISKRSSAPGLRSGFIAGD-ASILKKYK  255 (374)
T ss_pred             HHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCc-EEEEeccccccCCccceeEEEecC-HHHHHHHH
Confidence            78888999999999999997643211 1110000        0011 25667789975 455788888863 33332211


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAY  254 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  254 (367)
                      .. ..+....                                              ........+...+.  ..+.+++.
T Consensus       256 ~~-~~~~~~~----------------------------------------------~~~~~q~~~~~~l~--~~~~~~~~  286 (374)
T PRK05839        256 AY-RTYLGCA----------------------------------------------SPLPLQKAAAVAWL--DDEHAEFF  286 (374)
T ss_pred             HH-HhhcCCC----------------------------------------------CChHHHHHHHHHhc--cchHHHHH
Confidence            00 0000000                                              00000111111111  23334555


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEE-C----CeeEEEEEec
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASF-Q----GRPFLRFVVT  328 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~-~----~~~~lRi~~~  328 (367)
                      .++..+..+++.+.|    ++.  .|+....+++++++    ..++.++|.+ .|+ .+.++.. .    +.+++|+++.
T Consensus       287 ~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~~----~~~~~~~l~~~~gi-~v~pg~~f~~~~~~~~~iRis~~  355 (374)
T PRK05839        287 RNIYAKNLKLAREIL----GIT--IPPATFYVWLPVDN----DEEFTKKLYQNEGI-KVLPGSFLGRNGIGKGYVRIALV  355 (374)
T ss_pred             HHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCCC----hHHHHHHHHHHCCE-EEeCchhhCCCCCCCCeEEEEec
Confidence            555556666665554    222  34455556666643    4578888875 664 4544422 2    2579999874


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q psy3048         329 SPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~~  349 (367)
                      .   +++++...++.|.++++
T Consensus       356 ~---~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        356 Y---DTPKLEKALEIIKTYLE  373 (374)
T ss_pred             C---CHHHHHHHHHHHHHHhh
Confidence            2   58999999999988764

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.42  E-value=2e-11  Score=118.33  Aligned_cols=132  Identities=19%  Similarity=0.080  Sum_probs=95.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec-C-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++......++..|++++.++. + +++.+|+++|+++++....   ...++++++++||||.+   +.+++
T Consensus       120 Gd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~---~~~~~i~~~p~NPTG~~~s~~~~~~  196 (396)
T PRK09257        120 DAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA---GDVVLLHGCCHNPTGADLTPEQWDE  196 (396)
T ss_pred             CCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHH
Confidence            345777888888888888999999999997 2 4578999999998864211   12577778999999998   56788


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh-hhhhh--hCCCCCcceeeecccccccc-CCcceeEEE
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP-EYAHL--KRGLEYVDSFAFNAHKWLLT-NHDCSAMWV  164 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~-~~~~~--~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~  164 (367)
                      |+++|++||++++.|.+|....+..+ .....  +.+...--+++.|..|.++. ...+|++++
T Consensus       197 l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~  260 (396)
T PRK09257        197 LAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV  260 (396)
T ss_pred             HHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence            89999999999999999976543211 11110  11111113667889999985 688999874

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.42  E-value=1.1e-10  Score=113.45  Aligned_cols=273  Identities=12%  Similarity=0.115  Sum_probs=154.2

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDA   69 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~   69 (367)
                      .||++||.+...+ ...         ....+|..+..-|-....+....+..            +..++.     .|+++
T Consensus       111 ~Alk~ar~~~~~~-~~~---------~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~  175 (406)
T PRK12381        111 AALKLARKYAHDR-YGS---------HKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNS  175 (406)
T ss_pred             HHHHHHHHHHhhc-CCC---------CCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHH
Confidence            4788888775422 100         12345555666666665555544421            222322     37899


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccc-----cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcce
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCA-----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS  144 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~-----i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~  144 (367)
                      |++.+++.+      .+|++. |.+++|.     .+.+++|.++|++||+++++|++|.+.......+.....++ ..|+
T Consensus       176 l~~~l~~~~------aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v-~pDi  247 (406)
T PRK12381        176 ASALIDDQT------CAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDV  247 (406)
T ss_pred             HHHhccCCe------eEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCC-CCCE
Confidence            998886433      355554 5566654     36789999999999999999999965433221111111233 2466


Q ss_pred             eeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc
Q psy3048         145 FAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ  224 (367)
Q Consensus       145 ~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (367)
                      +  +..|.+++...+|+++.++. .. ..+..   ..    .     ..                               
T Consensus       248 ~--t~sK~l~gG~~ig~~~~~~~-~~-~~~~~---~~----~-----~~-------------------------------  280 (406)
T PRK12381        248 L--TTAKALGGGFPIGAMLTTEK-CA-SVMTV---GT----H-----GT-------------------------------  280 (406)
T ss_pred             E--EehhhhhCCCceEEEEEcHH-HH-hhcCC---CC----C-----CC-------------------------------
Confidence            4  55698876566788777432 22 21110   00    0     00                               


Q ss_pred             cccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC-chHHHHH
Q psy3048         225 HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD-NDLTNQL  300 (367)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~-~~~~~~l  300 (367)
                        +. .+..+.+....++++.+..   .++.++..++.+++.+.|+++. .+.++.. +.. .++.+.+... ......+
T Consensus       281 --t~-~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~  354 (406)
T PRK12381        281 --TY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQI  354 (406)
T ss_pred             --CC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHH
Confidence              00 0111222333444444422   2456777888888888887752 2222221 122 2334444321 1235678


Q ss_pred             HHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       301 ~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      .+.+.++|.+ +.+   .++..+|+++ ....+++||+++++.|+++++++..+.
T Consensus       355 ~~~l~~~Gv~-v~~---~g~~~lRl~p-~~~~t~~~i~~~~~~l~~~l~~~~~~~  404 (406)
T PRK12381        355 SQEAAKAGVM-VLI---AGPNVVRFAP-ALNISEEEITTGLDRFARACERFVSRG  404 (406)
T ss_pred             HHHHHHCCcE-Eee---CCCCEEEEeC-CccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            8889999854 332   2446899965 455689999999999999998875543

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.41  E-value=1.3e-11  Score=121.96  Aligned_cols=128  Identities=11%  Similarity=0.061  Sum_probs=91.3

Q ss_pred             eEEEecCCcchhHHHHHHhC--CcceEEEecCC--C-----CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC
Q psy3048          31 LVAYASDQSNSSVEKSAIIG--DVPVRQLRSDD--N-----GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN  101 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~--g~~v~~v~~~~--~-----~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d  101 (367)
                      -.|++....+......++..  |++++.++++.  +     +.+|+++|++++++.+      .+++++.|+||||.+-+
T Consensus       185 D~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~------kai~l~nP~NPTG~vls  258 (521)
T TIGR03801       185 DKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI------KALFVVNPSNPPSVAMS  258 (521)
T ss_pred             CEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCC------cEEEEeCCCCCCCCCCC
Confidence            35666677888877777765  67777777742  2     8899999998876655      37778899999999955


Q ss_pred             ---hhhHHHHHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecc
Q psy3048         102 ---LEELGPICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNA  167 (367)
Q Consensus       102 ---l~~I~~l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~  167 (367)
                         +++|+++|++|  |+++++|++|+.+...   +.........--+++.|..|.++ ++..+|+++....
T Consensus       259 ~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~  327 (521)
T TIGR03801       259 DESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKD  327 (521)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence               78888899986  9999999999854321   11111111111366778899985 5588999888654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.41  E-value=1e-10  Score=115.00  Aligned_cols=265  Identities=12%  Similarity=0.009  Sum_probs=171.0

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh---hhH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL---EEL  105 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl---~~I  105 (367)
                      +.-.|++.+.+|+....+.+..|++++.||.|+ ..+|+++|++.++...-    ..+.+.-..+||||..-++   ++|
T Consensus       178 pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~~~----k~~y~~P~~qNPtG~tms~~rR~~L  252 (459)
T COG1167         178 PGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPEALEEALAQWKP----KAVYVTPTFQNPTGVTMSLERRKAL  252 (459)
T ss_pred             CCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhcCC----cEEEECCCCCCCCCCccCHHHHHHH
Confidence            445777789999999999999999999999974 55799999999987521    2456666678999998655   689


Q ss_pred             HHHHhhcCcEEEEecccccccccChhh---hhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEY---AHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~---~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      .++|++||++++.|..++-..+.....   .....  ..--++..+..|.+...-++|+++.... .++... .......
T Consensus       253 l~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~--~~rViy~gSFSK~l~PglRlG~vv~p~~-~~~~~~-~~k~~~~  328 (459)
T COG1167         253 LALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDA--PGRVIYLGSFSKTLAPGLRLGYVVAPPE-LIEKLL-RLKQAAD  328 (459)
T ss_pred             HHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCC--CCCEEEEeeehhhcccccceeeeeCCHH-HHHHHH-HHHHHhc
Confidence            999999999999999998766643221   11111  1125788889999998888999888532 222110 0000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh--HHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG--LKGLQAYLRKHIS  260 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~~~~~~~  260 (367)
                      .                                              .+..+....+...+. -|  ...+.++.+...+
T Consensus       329 ~----------------------------------------------~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~  361 (459)
T COG1167         329 L----------------------------------------------GPSSLSQAALAAFLL-SGHYDRHLRRLRREYAR  361 (459)
T ss_pred             C----------------------------------------------CCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            0                                              000011122222222 22  3345555666667


Q ss_pred             HHHHHHHHhcCCC--CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-C----CeeEEEEEecCCCCC
Q psy3048         261 LAKKFADLVEKDD--RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-Q----GRPFLRFVVTSPETN  333 (367)
Q Consensus       261 la~~l~~~L~~~~--g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~----~~~~lRi~~~~~~~~  333 (367)
                      ..+.+.+.|++..  ++....|..-..+++++++ .-...++.++..++|.....++.. .    ...++|++++.  .+
T Consensus       362 rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~-~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~--~~  438 (459)
T COG1167         362 RRDALLEALAEYLPELATWTRPEGGLFLWLELPE-GIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS--PS  438 (459)
T ss_pred             HHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCC-CCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC--CC
Confidence            7777788887763  3333334433344556654 334678888888888654442222 1    24589997743  46


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy3048         334 QCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~  352 (367)
                      ++++++.+..|.+++.+..
T Consensus       439 ~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         439 EEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8999999999998887654

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.41  E-value=1.4e-11  Score=117.91  Aligned_cols=242  Identities=10%  Similarity=-0.033  Sum_probs=142.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~  106 (367)
                      .-.|++++.+|..+..+++..|++++.++       +++++++   +.      +.+|+++.++|+||.+-   ++++|.
T Consensus       111 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-------~~~~l~~---~~------~~~v~~~~p~NPtG~~~~~~~~~~i~  174 (364)
T PRK07865        111 GDVVVIPELAYPTYEVGARLAGATVVRAD-------SLTELGP---QR------PALIWLNSPSNPTGRVLGVDHLRKVV  174 (364)
T ss_pred             CCEEEECCCCcccHHHHHHhcCCEEEecC-------ChhhCCc---cc------ceEEEEcCCCCCCCccCCHHHHHHHH
Confidence            44577788899999888888999888774       2333332   22      35777788999999884   567888


Q ss_pred             HHHhhcCcEEEEecccccccccChhhh---hhhCCCC-Ccceeeecccccccc-CCcceeEEEecchhhhhhccCCcccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYA---HLKRGLE-YVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~---~~~~~~~-~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++|++||+++++|++|+...+..+...   ....+.. .-.+++.+..|.+.. ...+|+++. +++.+...... ..+.
T Consensus       175 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~-~~~~~~~~~~~-~~~~  252 (364)
T PRK07865        175 AWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG-DPALVAELLEV-RKHA  252 (364)
T ss_pred             HHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEec-CHHHHHHHHHH-HHhc
Confidence            999999999999999975433211100   0000000 114778889999854 356777665 33333221100 0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHIS  260 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~  260 (367)
                      .                                           +..      ..+...++.+.+. .+.+++..++..+
T Consensus       253 ~-------------------------------------------~~~------~~~~q~~~~~~l~~~~~~~~~~~~~~~  283 (364)
T PRK07865        253 G-------------------------------------------MMV------PAPVQAAMVAALGDDAHVREQRERYAR  283 (364)
T ss_pred             C-------------------------------------------CCc------CHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            0                                           000      0011112222222 2345566667778


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid  338 (367)
                      ..+++.+.|++. |+.+..++....+.+.+.   ....++.+.|.++|+....+..+.  +..++|++++.   ++++++
T Consensus       284 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~  356 (364)
T PRK07865        284 RRAVLRPALEAA-GFRVDHSEAGLYLWATRG---EDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TDERIA  356 (364)
T ss_pred             HHHHHHHHHHHc-CCcccCCCccEEEEEeCC---CCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CHHHHH
Confidence            888888888886 776554432222333332   124567788888885433322222  35699998753   589999


Q ss_pred             HHHHHHH
Q psy3048         339 FAWNEIS  345 (367)
Q Consensus       339 ~li~~l~  345 (367)
                      ++++.|+
T Consensus       357 ~~~~~l~  363 (364)
T PRK07865        357 AAVERLA  363 (364)
T ss_pred             HHHHHhh
Confidence            9988874

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.41  E-value=4.6e-11  Score=113.30  Aligned_cols=235  Identities=11%  Similarity=-0.010  Sum_probs=145.6

Q ss_pred             EEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH---H
Q psy3048          33 AYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI---C  109 (367)
Q Consensus        33 v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l---~  109 (367)
                      |++.+.++......++..|++++.++.++      +.+.    +..      .++++++|+||||.+-+.+++.++   |
T Consensus        96 v~v~~P~y~~y~~~~~~~g~~~~~v~~~~------~~~~----~~~------~~v~l~nPnNPTG~~~s~~~l~~l~~~~  159 (339)
T PRK06959         96 VGIAPLAYSEYAPAFARHGHRVVPLDEAA------DTLP----AAL------THLIVVNPNNPTAERLPAARLLRWHAQL  159 (339)
T ss_pred             EEEcCCCcHHHHHHHHHCCCEEEeecccc------hhcc----ccC------CEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence            45577888888889999999999887643      2222    222      378899999999999666666554   5


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ++++.++++|++|.-+... +.... .....+ -++..+..|.++ .+..+|+++.. ++.+........+         
T Consensus       160 ~~~~~~vI~DEay~~~~~~-~s~~~-~~~~~~-vi~l~SfSK~~gl~GlRiGy~v~~-~~li~~l~~~~~~---------  226 (339)
T PRK06959        160 AARGGTLIVDEAFADTLPA-ASLAA-HTDRPG-LVVLRSVGKFFGLAGVRAGFVLAA-PALLAALRDALGA---------  226 (339)
T ss_pred             HHcCCEEEEECCCccCCCc-ccchh-ccCCCC-EEEEecChhhcCCcchheEEEecC-HHHHHHHHHhcCC---------
Confidence            6789999999999754321 11111 101111 256677899987 55778888874 3333322111000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l~~  267 (367)
                            |                               .      ...+...++...+. .+-.++..++..+..+++.+
T Consensus       227 ------~-------------------------------~------vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~  263 (339)
T PRK06959        227 ------W-------------------------------T------VSGPARHAVRAAFADAAWQAAMRERLAADGARLAA  263 (339)
T ss_pred             ------C-------------------------------C------CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence                  0                               0      00122222222222 22345556677778888999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .|+++ |+++.  +..+.+.++++    ...++.+.|.++|+. +..  +....++||++..   +.+|+++++++|+++
T Consensus       264 ~L~~~-g~~~~--~~~~f~~~~~~----~~~~l~~~l~~~GI~-vr~--~~~~~~lRisi~~---~~~e~~~l~~al~~~  330 (339)
T PRK06959        264 LLRAH-GFAVH--ATPLFSWTDDP----RAAALHAALARRGIW-TRY--FAPPPSVRFGLPA---DEAEWQRLEDALAEC  330 (339)
T ss_pred             HHHHC-CCCcc--CcceEEEEeCC----CHHHHHHHHHhCCeE-EEE--CCCCCeEEEECCC---CHHHHHHHHHHHHHH
Confidence            99887 77654  22233344432    256789999999854 432  2344689997532   578999999999998


Q ss_pred             HHHhh
Q psy3048         348 SSEMN  352 (367)
Q Consensus       348 ~~~~~  352 (367)
                      .+.+.
T Consensus       331 ~~~~~  335 (339)
T PRK06959        331 VPTLA  335 (339)
T ss_pred             HHHHh
Confidence            87664

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.40  E-value=2.3e-11  Score=120.40  Aligned_cols=128  Identities=12%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCc--ceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDV--PVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~--~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      -.|++.+..+......+++.|.  +++.++.+  +++.+|+++|++++.+.++      +|++++|+||||.+-+   ++
T Consensus       191 D~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tk------ai~l~nP~NPTG~v~s~e~l~  264 (527)
T PRK09275        191 DKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIK------ALFLVNPSNPPSVAMSDESLE  264 (527)
T ss_pred             CEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCC------EEEEeCCcCCcCCCCCHHHHH
Confidence            3455567788888888887755  44555543  3589999999998766553      7788899999999955   78


Q ss_pred             hHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecc
Q psy3048         104 ELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNA  167 (367)
Q Consensus       104 ~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~  167 (367)
                      +|+++|++  +|+++++|++|+.....   +.........--+++.+..|.++ +++.+|+++....
T Consensus       265 ~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~  328 (527)
T PRK09275        265 KIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHED  328 (527)
T ss_pred             HHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence            88889954  59999999999764321   11111111111466677899985 5588999887654

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.40  E-value=3.4e-11  Score=117.46  Aligned_cols=258  Identities=12%  Similarity=0.061  Sum_probs=137.1

Q ss_pred             eEEEecCCcchhHHHHHHhCC----cceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC--
Q psy3048          31 LVAYASDQSNSSVEKSAIIGD----VPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN--  101 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g----~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d--  101 (367)
                      .+++..+.++..+...+...+    ..++.++.+.   ++.+|+++|+  +.+.      +.+++++.++||||.+-+  
T Consensus       128 ~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~------~~~i~l~~P~NPTG~~~s~~  199 (416)
T PRK09440        128 KILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDED------TGAICVSRPTNPTGNVLTDE  199 (416)
T ss_pred             eEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCC------ceEEEEecCCCCCCccCCHH
Confidence            344424556666555444322    2223333332   3678999987  2222      358888999999999954  


Q ss_pred             -hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         102 -LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       102 -l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                       +++|+++|++||+++++|++|+-.. ....+.........--++..+..|.+.....+|+++.. +..++...... .+
T Consensus       200 ~~~~l~~~a~~~~~~iI~De~Y~~~~-~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~-~~l~~~~~~~~-~~  276 (416)
T PRK09440        200 ELEKLDALARQHNIPLLIDNAYGPPF-PGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIAD-EEIIEALSNMN-GI  276 (416)
T ss_pred             HHHHHHHHHHHcCCcEEEeCCccccC-CCcchhhcCccccCCeEEEecccccCCCcceEEEEeCC-HHHHHHHHHHH-HH
Confidence             7888889999999999999996321 11001110000111125567889976555778887753 33332211000 00


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHH----H-HH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ----A-YL  255 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~----~-~~  255 (367)
                      ...                                           +      ...+...++...+....+.    + ..
T Consensus       277 ~~~-------------------------------------------~------~s~~~q~~~~~~l~~~~~~~~~~~~~~  307 (416)
T PRK09440        277 ISL-------------------------------------------A------PGRLGPAIAAEMIESGDLLRLSETVIR  307 (416)
T ss_pred             hcc-------------------------------------------C------CCcHHHHHHHHHhccchHHHHHHHHHH
Confidence            000                                           0      0012222222222111111    1 22


Q ss_pred             HHHHHHHHHHHHHhcCC-C--CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EEC-C--------eeE
Q psy3048         256 RKHISLAKKFADLVEKD-D--RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQ-G--------RPF  322 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~-~--g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~-~--------~~~  322 (367)
                      +...+..+.+.+.|.+. +  ++.+..|.....+++.++.......++.+.+.++|+. +.++ .+. +        ..+
T Consensus       308 ~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~-v~pg~~F~~~~~~~~~~~~~~  386 (416)
T PRK09440        308 PFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDLPITTEELYQRLKARGVL-VVPGHYFFPGLDEDWPHAHQC  386 (416)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCCCCCHHHHHHHHHHCCEE-EechHhhCCCCccccCCcCce
Confidence            22333344444444332 2  4555445455666666653112346788888778754 4443 221 1        248


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +|++++.   ++++++.+++.|++++++..
T Consensus       387 iRis~~~---~~~~l~~~i~~l~~~~~~~~  413 (416)
T PRK09440        387 IRMNYVQ---DDEEIEKGIAILAEEVEKAY  413 (416)
T ss_pred             EEEEecC---CHHHHHHHHHHHHHHHHHHh
Confidence            9998752   58999999999999987654

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.40  E-value=9.3e-11  Score=111.02  Aligned_cols=236  Identities=10%  Similarity=0.030  Sum_probs=151.4

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      .|++.+.++......++..|++++.++.++++.++...    +. .      ..++++++++||||.+-+.+++.+++ +
T Consensus        98 ~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~~-~------~~~i~i~nP~NPTG~~~s~~~l~~l~-~  165 (335)
T PRK14808         98 RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN----VG-E------GDVVFIPNPNNPTGHVFEREEIERIL-K  165 (335)
T ss_pred             cEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChhH----cc-C------CCEEEEeCCCCCCCCCcCHHHHHHHH-h
Confidence            35667789999999999999999999997777665332    21 1      24788999999999999999999998 5


Q ss_pred             cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNT  190 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~  190 (367)
                      +++++++|++|.-+.  ............+ -+++.+..|.++ ....+|+++... +.+.........           
T Consensus       166 ~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~-vi~~~S~SK~~~l~GlRvG~~v~~~-~~~~~l~~~~~~-----------  230 (335)
T PRK14808        166 TGAFVALDEAYYEFH--GESYVDLLKKYEN-LAVIRTFSKAFSLAAQRIGYVVSSE-KFIDAYNRVRLP-----------  230 (335)
T ss_pred             cCCEEEEECchhhhc--CCchHHHHHhCCC-EEEEEechhhccCcccceEEEEeCH-HHHHHHHHhcCC-----------
Confidence            899999999986532  1111111111111 356677899998 457789988743 333221110000           


Q ss_pred             CCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3048         191 QSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVE  270 (367)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~  270 (367)
                          +                               ..   ..+....+.+++..  .+.+.+..++..+..+++.+.|+
T Consensus       231 ----~-------------------------------~~---~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~  270 (335)
T PRK14808        231 ----F-------------------------------NV---SYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALR  270 (335)
T ss_pred             ----C-------------------------------CC---CHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence                0                               00   00111222223321  22345555566666788888888


Q ss_pred             CCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         271 KDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       271 ~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ++ |+.+. +++.+.+.+++++.  ...++.+.|.++|+ .+..  +  ..++||++.    +.++.++++++|+++
T Consensus       271 ~~-g~~~~-~~~g~f~~~~l~~~--~~~~~~~~l~~~Gi-~V~~--~--~~~~Risi~----~~~~~~~~~~~l~~~  334 (335)
T PRK14808        271 EM-GYRIT-DSRGNFVFIFMEKE--EKERLLEHLRAKNI-AVRS--F--REGVRITIG----KREENDMILKELEVF  334 (335)
T ss_pred             HC-CCEEC-CCCCeEEEEeCCCc--cHHHHHHHHHHCCe-EEEE--C--CCCeEEecC----CHHHHHHHHHHHHhh
Confidence            87 77755 45667777777532  24678888998985 3432  2  247999764    478999999999764

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.39  E-value=1.4e-10  Score=111.52  Aligned_cols=213  Identities=13%  Similarity=0.108  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+.+.+      .+|++....++.|...    ++++|.++|++||+++++|++|.++......+.....++ .
T Consensus       156 d~~~l~~~~~~~~------~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~-~  228 (377)
T PRK02936        156 DIKALKEVMNEEV------AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGL-D  228 (377)
T ss_pred             CHHHHHHhccCCe------EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCC-C
Confidence            7899999886544      4677777777666653    399999999999999999999975433221111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++  +..|.+++...+|+++.++ + +...+.       ....     .                             
T Consensus       229 ~di~--t~sK~l~~G~~ig~v~~~~-~-~~~~~~-------~~~~-----~-----------------------------  263 (377)
T PRK02936        229 PDIV--TVAKGLGNGIPVGAMIGKK-E-LGTAFG-------PGSH-----G-----------------------------  263 (377)
T ss_pred             CcEE--EEcccccCCCccEEEEEcH-H-HHhhcc-------CCCC-----C-----------------------------
Confidence            3654  4689988554577776632 2 222111       0000     0                             


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcCCchHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKGDNDLT  297 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~~~~~~  297 (367)
                          .+. .+..+.+.+..++++.+..   ++..++..++.+++++.|++    ++.+..+. +...++.+.+.. .  .
T Consensus       264 ----~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~-~--~  331 (377)
T PRK02936        264 ----STF-GGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKNIR-GKGLMIGIECTE-E--V  331 (377)
T ss_pred             ----CCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe-ecceEEEEEecc-h--H
Confidence                000 0111223344444444321   23445555666666666654    33322221 223456666643 2  5


Q ss_pred             HHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       298 ~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ..+.+.|.++|.+ +.+   .+..++|+++ +...++++++++++.|+++
T Consensus       332 ~~~~~~l~~~gv~-v~~---~g~~~lRi~p-~~~~~~~~i~~~i~~l~~~  376 (377)
T PRK02936        332 APVIEQLREEGLL-VLS---AGPNVIRLLP-PLVVTKEELDQAVYLLKKV  376 (377)
T ss_pred             HHHHHHHHHCCeE-Eec---CCCCEEEEEC-CcccCHHHHHHHHHHHHHh
Confidence            6788888888854 332   3446899965 4556899999999999875

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.39  E-value=6.7e-13  Score=122.24  Aligned_cols=139  Identities=19%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             CceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc---CC
Q psy3048          29 SRLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF---DN  101 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i---~d  101 (367)
                      +...|++.+.+|+.+++..   .+.|++++.++.+++|.+|+++|++.+++...+...|.+|+++.+++.. |.+   ++
T Consensus        67 ~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~e  146 (290)
T PF01212_consen   67 PGESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEE  146 (290)
T ss_dssp             TTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHH
T ss_pred             cCCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHH
Confidence            4678899999999886652   4589999999986669999999999999866555557788888765543 766   57


Q ss_pred             hhhHHHHHhhcCcEEEEecccccccccC--hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhh
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGSALLL--PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN  172 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~~~~~--~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~  172 (367)
                      |++|.++||+||+++|+|||--+.....  ...+...   ..+|+++++++|.++.|  .|.+++.+++.+++
T Consensus       147 l~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~--~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  147 LRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAP--GGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SS--SEEEEEESHHHHHH
T ss_pred             HHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEEEcccccc--cceEEEechHHHHH
Confidence            7888889999999999999853222110  1112222   35699999999999987  33444444554443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.38  E-value=7.6e-11  Score=111.78  Aligned_cols=248  Identities=18%  Similarity=0.263  Sum_probs=160.2

Q ss_pred             CceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChh
Q psy3048          29 SRLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      ++.+|...+ .+-....-+    ...|+++.+++..     +.+++++++.+ ++      .+|.+-.|+|++.-+.||+
T Consensus       102 GD~vl~~~~-~YG~t~~~~~~~l~~~gi~~~~~d~~-----~~~~~~~~~~~~~t------k~v~lEtPsNP~l~v~DI~  169 (396)
T COG0626         102 GDHVLLPDD-LYGGTYRLFEKILQKFGVEVTFVDPG-----DDEALEAAIKEPNT------KLVFLETPSNPLLEVPDIP  169 (396)
T ss_pred             CCEEEecCC-ccchHHHHHHHHHHhcCeEEEEECCC-----ChHHHHHHhcccCc------eEEEEeCCCCcccccccHH
Confidence            355555544 444443333    3478899988764     56677777764 66      4899999999999999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc-eeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC-SAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|+++||++|+.++||..++.+.+.-+    ..-|   +|+++.|..|++++-..+ |.+++.+.+.+.+..    .+..
T Consensus       170 ~i~~~A~~~g~~vvVDNTfatP~~q~P----L~~G---aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~----~~~~  238 (396)
T COG0626         170 AIARLAKAYGALVVVDNTFATPVLQRP----LELG---ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELL----FFAQ  238 (396)
T ss_pred             HHHHHHHhcCCEEEEECCcccccccCh----hhcC---CCEEEEeccccccCCcceeeeEEecChHHHHHHH----HHHH
Confidence            999999999999999999987665322    1123   599999999999976442 223332333232211    0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                            ..+....++..|..++  |.+-+.-+++++.+++
T Consensus       239 ~~--------------------------------------------~~G~~l~p~dA~l~lR--GlkTL~~Rm~~~~~nA  272 (396)
T COG0626         239 RA--------------------------------------------NTGAVLSPFDAWLLLR--GLRTLALRMERHNENA  272 (396)
T ss_pred             Hh--------------------------------------------hcCCCCCHHHHHHHHh--ccchHHHHHHHHHHHH
Confidence            00                                            0001112244454443  6777888899999999


Q ss_pred             HHHHHHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhccC------cE---EEEE--
Q psy3048         263 KKFADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSHK------QI---YIIK--  314 (367)
Q Consensus       263 ~~l~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g------~~---~~~~--  314 (367)
                      ..+.+.|+++|.++ +..|.                ..++++|.+.+. +...++.+.|.--.      .+   ...|  
T Consensus       273 ~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~-~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~  351 (396)
T COG0626         273 LKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE-EAAKKFLDSLKLFKLAESLGGVESLISHPAT  351 (396)
T ss_pred             HHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh-HHHHHHHHhCCccEEeccCCCcccccccccc
Confidence            99999999999886 45442                357899999863 44556666654211      00   0111  


Q ss_pred             eEE------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         315 ASF------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       315 ~~~------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..+            -..+.+|+|+.     -||++.+++.|++.++.+
T Consensus       352 ~th~~~~~~~r~~~Gi~~~LvRlSVG-----lEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         352 MTHASIPLEERAKAGITDGLVRLSVG-----LEDVEDLIADLEQALAKA  395 (396)
T ss_pred             cCcccCCHhHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHHhh
Confidence            011            02568999874     378999999999887754

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.38  E-value=2.8e-10  Score=110.23  Aligned_cols=217  Identities=13%  Similarity=0.112  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++.+.+      .+|++..+.+++|..    +.+++|.++|++||+++++|++|+++............++ .
T Consensus       171 d~~~l~~~i~~~~------~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~-~  243 (396)
T PRK02627        171 DIEALKAAITDKT------AAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGI-E  243 (396)
T ss_pred             CHHHHHHhcCCCe------EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCC-C
Confidence            8999999885433      477777777777743    3589999999999999999999986432211111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++  ..|.+.++..+|+++.++. ... .+.       ....     ...|                          
T Consensus       244 pdi~t--~sK~~~~G~rig~~~~~~~-~~~-~~~-------~~~~-----~~t~--------------------------  281 (396)
T PRK02627        244 PDIMT--LAKGLGGGVPIGAVLAKEK-VAD-VFT-------PGDH-----GSTF--------------------------  281 (396)
T ss_pred             CCEEE--EcchhhCCcccEEEEEcHH-HHh-ccC-------CCCC-----CCCC--------------------------
Confidence            36555  4588886667888887432 221 111       0000     0000                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCCchHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGDNDLT  297 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~~~~~  297 (367)
                              .+..+......++++.+..   ++..++.+++.++++++|.++    +.+..+ ......+.+.+..   ..
T Consensus       282 --------~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~i~~~~---~~  346 (396)
T PRK02627        282 --------GGNPLACAAALAVIEIIEE---EGLLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIGIELDR---PA  346 (396)
T ss_pred             --------CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEEEEecC---cH
Confidence                    0111112233334443322   234455666666666666543    222211 1223445555522   25


Q ss_pred             HHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       298 ~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .++.+.|.++|+ .+.+.   +..++|+++ +...++++++++++.|+++++++
T Consensus       347 ~~~~~~l~~~Gv-~v~~~---~~~~lRi~~-~~~~~~~~i~~~~~~l~~~l~~~  395 (396)
T PRK02627        347 AEIVKKALEKGL-LINVT---GDNVLRLLP-PLIISKEEIDEAVDRLEEVLKEL  395 (396)
T ss_pred             HHHHHHHHHCCe-EEeec---CCCEEEEEC-CcccCHHHHHHHHHHHHHHHHhh
Confidence            688889998884 44432   346799965 44567999999999999987753

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.38  E-value=4e-11  Score=114.55  Aligned_cols=239  Identities=11%  Similarity=0.011  Sum_probs=140.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .-.|++++.+|..+...+...|++++.++       +++.++.   +.      +.+|++++++|++|.+-+   +++|.
T Consensus       105 gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~-------~~~~l~~---~~------~~~v~~~~p~NPtG~~~~~~~~~~i~  168 (357)
T TIGR03539       105 GDTVVIPELAYPTYEVGALLAGATPVAAD-------DPTELDP---VG------PDLIWLNSPGNPTGRVLSVDELRAIV  168 (357)
T ss_pred             CCEEEECCCCcHHHHHHHHhcCCEEeccC-------ChhhcCc---cC------ccEEEEeCCCCCcCccCCHHHHHHHH
Confidence            34677788999988888888898887763       2333321   22      357778899999999854   67799


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhC----CC-CCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKR----GL-EYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~----~~-~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      ++|++||+++++|++|+...+..+.. ..+.    +. ..-.++..+..|.+.. ...+|+++. +++.+....... ..
T Consensus       169 ~~a~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~-~~~~~~~~~~~~-~~  245 (357)
T TIGR03539       169 AWARERGAVVASDECYLELGWEGRPV-SILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVR-KH  245 (357)
T ss_pred             HHHHHcCeEEEEecchhhhccCCCCc-cceecccCCCccccEEEEeccccccCCCceeEEEEec-CHHHHHHHHHHH-hh
Confidence            99999999999999996533311110 0000    00 0113677789999743 355788764 333332211000 00


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHI  259 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~  259 (367)
                      . .           +                               .   .   ..+...++...+ ....++...++..
T Consensus       246 ~-~-----------~-------------------------------~---~---~~~~q~~~~~~l~~~~~~~~~~~~~~  276 (357)
T TIGR03539       246 A-G-----------L-------------------------------M---V---PAPVQAAMVAALGDDGHVAEQKARYA  276 (357)
T ss_pred             c-c-----------c-------------------------------C---C---CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            0 0           0                               0   0   011112222222 1234555666677


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~ed  336 (367)
                      +..+++.+.|++. |+.+.. |..+.+.+...+ . ...++.+.|.++|+ .+.++.+   .+..++|+++..   ++++
T Consensus       277 ~~~~~~~~~L~~~-g~~~~~-p~~~~~~~~~~~-~-~~~~~~~~l~~~gV-~v~pg~~f~~~~~~~iRis~~~---~~~~  348 (357)
T TIGR03539       277 ARRAQLKPALEKA-GFRIDH-SEAGLYLWATRG-E-DAWDTVDRLAELGI-LVAPGDFYGPAGSQHVRVALTA---TDER  348 (357)
T ss_pred             HHHHHHHHHHHHc-CCCCcC-CCccEEEEEECC-C-CHHHHHHHHHhCCE-EECCccccCCCCCCeEEEEecC---CHHH
Confidence            7788888888885 776543 444443332222 1 24578888888885 4444332   235799998753   5788


Q ss_pred             HHHHHHHH
Q psy3048         337 VAFAWNEI  344 (367)
Q Consensus       337 id~li~~l  344 (367)
                      ++.+++.|
T Consensus       349 i~~~~~~l  356 (357)
T TIGR03539       349 IAAAVARL  356 (357)
T ss_pred             HHHHHHhh
Confidence            98888765

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.36  E-value=6.9e-10  Score=108.39  Aligned_cols=233  Identities=11%  Similarity=0.101  Sum_probs=131.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+++.........+|++.-.....|.+    +.+++|.++|++||+++++|+.|+++......+.....++ .
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v-~  259 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI-T  259 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC-C
Confidence            6788888886542111223456665555555654    3799999999999999999999976433222111111233 3


Q ss_pred             cceeeecccccccc-CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++++  |.++. ...+|+++.++.  +. .+.  ...     .   ..  .|                         
T Consensus       260 PDi~t~~--K~l~~~G~pigav~~~~~--i~-~~~--~~~-----~---~~--T~-------------------------  297 (425)
T PRK09264        260 PDIVTLS--KSISGYGLPMALVLIKPE--LD-VWK--PGE-----H---NG--TF-------------------------  297 (425)
T ss_pred             CCEEEec--cccCCCccceEEEEEchh--hh-ccC--CCc-----c---CC--CC-------------------------
Confidence            5877774  98765 344688887533  21 110  000     0   00  00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCc-eeEEEEEcCCch
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPPSM-GLVCFRLKGDND  295 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~-~~v~f~~~~~~~  295 (367)
                            .   +.........++++.+..+  .++.++..++.++++++|+++    |.+ +...+.. .++.+.+.. ..
T Consensus       298 ------~---gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~~~vrg~Gl~~~i~l~~-~~  364 (425)
T PRK09264        298 ------R---GNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERLEEIAAKYPGL-GAEVRGRGMMQGIDFGD-GE  364 (425)
T ss_pred             ------C---CCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHhCCCc-eecceecccEEEEEecC-hH
Confidence                  0   1111122333444222111  245566677777777766543    222 1112222 333555543 34


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGS  357 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~  357 (367)
                      ...++.+.+.++|.+ +.+... ....+|+++ ....+++||+++++.|++.++++.++.++
T Consensus       365 ~~~~l~~~~~~~Gv~-~~~~~~-~~~~lr~~p-~l~~t~~ei~~~~~~l~~~l~~~~~~~~~  423 (425)
T PRK09264        365 LAGKIAAEAFENGLI-IETSGP-EDEVVKLLP-PLTIDEEELEEGLDILEEAVAEVLAEEES  423 (425)
T ss_pred             HHHHHHHHHHHCCCE-EeccCC-CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            456888889999954 333211 235899964 56678999999999999999887554443

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.36  E-value=2.7e-10  Score=110.08  Aligned_cols=270  Identities=9%  Similarity=0.003  Sum_probs=155.3

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEE---EecCCCC----CcCHHHHHHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQ---LRSDDNG----VLRGDALLTAV   74 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~---v~~~~~~----~~d~~~L~~~l   74 (367)
                      .||++||.+..+.    ++       .++.+|......|-+...++...|.....   .+...+.    ..|+++|++.+
T Consensus       108 ~Aik~ar~~~~~~----~~-------~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l  176 (395)
T PRK03715        108 GAIKLARKWGRKH----KN-------GAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI  176 (395)
T ss_pred             HHHHHHHHHhhcc----CC-------CCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHc
Confidence            4778888764311    01       12345666777888888777766543111   1111111    24788999888


Q ss_pred             HHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc
Q psy3048          75 KEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH  150 (367)
Q Consensus        75 ~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h  150 (367)
                      .+.+      .+|++....+..|.+.|    +++|.++|++||+++++|++|+++.....-+.....++ ..|+++++  
T Consensus       177 ~~~~------aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv-~PDi~t~g--  247 (395)
T PRK03715        177 TDKT------VAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGI-EPDIMTLG--  247 (395)
T ss_pred             CCCc------eEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCC-CCceeeeh--
Confidence            6433      46777777777788777    99999999999999999999986422221111111234 36887764  


Q ss_pred             cccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccc
Q psy3048         151 KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPL  230 (367)
Q Consensus       151 K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (367)
                      |.++++..+|.++.+++- .  .+  .+.+..+                                           +. .
T Consensus       248 K~lg~G~p~~av~~~~~i-~--~~--~~~~~~~-------------------------------------------T~-~  278 (395)
T PRK03715        248 KGIGGGVPLAALLAKAEV-A--VF--EAGDQGG-------------------------------------------TY-N  278 (395)
T ss_pred             hhhhCCcceEEEEEcccc-c--cc--cCCCcCC-------------------------------------------CC-C
Confidence            888876557777765432 1  01  0111000                                           00 0


Q ss_pred             cccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCchHHHHHHHH---H
Q psy3048         231 SRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDNDLTNQLYER---L  304 (367)
Q Consensus       231 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~---L  304 (367)
                      +....+....++|+.+..   +++.++.+++.++++++|+++   .++.-+ .-...++.+.+.. + ....+.+.   +
T Consensus       279 g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~v-rG~Glm~~i~l~~-~-~~~~~~~~~~~~  352 (395)
T PRK03715        279 GNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEGE-RGEGLLRALLLGK-D-IGPQIVEKARDM  352 (395)
T ss_pred             CCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCeE-EcceeEEEEEecC-c-hHHHHHHHHHhc
Confidence            111223344455555533   345677888888888888754   122211 1123444555543 1 12334433   3


Q ss_pred             hccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         305 MSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       305 ~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .++|.+ +.+   .+...+|+++ ....|++|||.+++.|++.++++
T Consensus       353 ~~~Gi~-~~~---~~~~~lR~~p-~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        353 QPDGLL-LNA---PRPNLLRFMP-ALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             cCCCEE-Eee---cCCCEEEEeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence            444743 322   1235899965 57788999999999999998764

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.35  E-value=4.8e-10  Score=110.13  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=141.2

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |.+++++++++...++....+|++.......|.+.|    ++++.++|++||+.+++|++|.++.....-+.....++ .
T Consensus       214 d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~  292 (459)
T PRK11522        214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV-Q  292 (459)
T ss_pred             CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCC-C
Confidence            788899988754333333456777766677788877    99999999999999999999975432222111112344 3


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++. ..+|.++.+++ ... .+... ++...                                     
T Consensus       293 PDivt~--gK~lggG~~Pigav~~~~~-i~~-~~~~~-~~~~~-------------------------------------  330 (459)
T PRK11522        293 PDILCL--AKALGGGVMPIGATIATEE-VFS-VLFDN-PFLHT-------------------------------------  330 (459)
T ss_pred             CCEEEe--chhhhCCCccceeEEEcHH-HHH-HhccC-CcccC-------------------------------------
Confidence            587654  6888764 24777777543 222 11100 11100                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeE-EeCC-C-CceeEEEEEcCCchH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFE-LVCP-P-SMGLVCFRLKGDNDL  296 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~-~~~~-~-~~~~v~f~~~~~~~~  296 (367)
                            ++-.++...+.+..+.|+.+..+   +..++..++.++|+++|+++. ++. ++.. . ...++.+.+.. +..
T Consensus       331 ------~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~-~~~  400 (459)
T PRK11522        331 ------TTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVD-NEI  400 (459)
T ss_pred             ------CCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecC-chH
Confidence                  00011112234445556665443   356788888899988887652 121 1211 1 22344455543 334


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      ...+.+.|.++|. ++.+.. .+...+|+.+ ....+++|||.++++|+++++++.+.
T Consensus       401 ~~~i~~~l~~~Gv-l~~~~~-~~~~~lr~~P-pl~~t~~~id~~l~~l~~~l~~~~~~  455 (459)
T PRK11522        401 GYNFASEMFRQRV-LVAGTL-NNAKTIRIEP-PLTLTIEQCEQVLKAARKALAAMRVS  455 (459)
T ss_pred             HHHHHHHHHHCCe-EEEecC-CCCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888999984 443332 2346899965 56678999999999999998876544

>PLN02368 alanine transaminase

Probab=99.35  E-value=1.1e-10  Score=113.13  Aligned_cols=135  Identities=13%  Similarity=0.024  Sum_probs=97.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++......+...|++++.+++++  ++.+|+++|++++++..+++..+.++++++++|+||.+   +.+++
T Consensus       155 Gd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~  234 (407)
T PLN02368        155 KDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE  234 (407)
T ss_pred             CCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHH
Confidence            34566678899999999999999999999863  48899999999997643222234678899999999998   56777


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh-hhhh---hhCC----CC-Cc-ceeeeccccccc--cCCcceeEEE
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP-EYAH---LKRG----LE-YV-DSFAFNAHKWLL--TNHDCSAMWV  164 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~-~~~~---~~~~----~~-~~-D~~~~~~hK~l~--~p~g~g~l~~  164 (367)
                      |+++|++||+++++|++|+-..+... .+..   ...+    .+ .. -++..+..|.+.  .+..+|+++.
T Consensus       235 l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~  306 (407)
T PLN02368        235 ILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM  306 (407)
T ss_pred             HHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence            88899999999999999977554221 1100   0001    11 11 245566799874  5678898875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.34  E-value=3e-10  Score=106.30  Aligned_cols=230  Identities=15%  Similarity=0.116  Sum_probs=144.1

Q ss_pred             ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEeccccccccc
Q psy3048          53 PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALL  128 (367)
Q Consensus        53 ~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~  128 (367)
                      .++.+|.+     |+++++++++++|      ..|++--..-.-|++    +=++++.++|++||++++.|+.|.+...-
T Consensus       165 g~~~vpfn-----Di~al~~ai~~~t------aAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRT  233 (404)
T COG4992         165 GFRHVPFN-----DIEALEAAIDEDT------AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT  233 (404)
T ss_pred             CceecCCC-----CHHHHHHHhccCe------EEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCcc
Confidence            35666665     9999999999976      356666555556665    34688999999999999999999876543


Q ss_pred             ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCc
Q psy3048         129 LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLP  208 (367)
Q Consensus       129 ~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (367)
                      ..-+....-++ ..|+++.  -|.+++..-+|.++.+ +... ..       +..+..                      
T Consensus       234 Gk~fA~e~~gV-~PDI~tl--aK~LgGG~PigA~la~-~~~~-~~-------~~~G~H----------------------  279 (404)
T COG4992         234 GKLFAYEHYGV-EPDILTL--AKALGGGFPIGAMLAT-EEIA-SA-------FTPGDH----------------------  279 (404)
T ss_pred             chHHHHHHhCC-CCCEEEe--eccccCCccceeeEEc-hhhh-hc-------CCCCcc----------------------
Confidence            33222222233 3477665  5888887778888875 2211 11       111111                      


Q ss_pred             chhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-ee
Q psy3048         209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GL  285 (367)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~  285 (367)
                                       -++-+++...+....++++.+..   +++.++.+++.++|.++|+++. .+.++.+ ... -+
T Consensus       280 -----------------gSTfGGNpLacAv~~a~l~~l~~---e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLm  339 (404)
T COG4992         280 -----------------GSTFGGNPLACAVALAVLEVLLE---EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLM  339 (404)
T ss_pred             -----------------cCCCCcCHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeE
Confidence                             01111222222333344554444   4455677888888988888863 2333332 222 23


Q ss_pred             EEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         286 VCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       286 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +-+.+.. +.....+...+.++|.+...    .+..++|+.+ ....+++|+|..+++|+++++....
T Consensus       340 iGiel~~-~~~a~~~~~~~~~~gvL~~~----a~~~ViR~~P-pL~i~~eei~~~~~~l~~~l~~~~~  401 (404)
T COG4992         340 IGIELKE-PYRARDIVRALREEGVLVLP----AGPNVIRFLP-PLVITEEEIDEALDALERALAAASA  401 (404)
T ss_pred             EEEEecC-cccHHHHHHHHHHCCeEEec----CCCCeEEecC-CccCCHHHHHHHHHHHHHHHHHhhh
Confidence            4455543 21357889999999954332    3456999954 5778999999999999999886543

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.31  E-value=1e-09  Score=105.56  Aligned_cols=247  Identities=15%  Similarity=0.122  Sum_probs=138.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcce---------EEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPV---------RQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD  100 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v---------~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~  100 (367)
                      +.+|..+...|-+...++...|.+.         ..++.  .-..|++++++.+++.+      .+|++..+.+++|.+.
T Consensus       111 ~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dl~~l~~~l~~~~------a~vi~e~v~~~~G~~~  182 (375)
T PRK04260        111 QEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSY--AIFNDLNSVKALVNKNT------AAVMLELVQGESGVLP  182 (375)
T ss_pred             CeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEE--eCCCCHHHHHHhcCCCe------EEEEECCeECCCCCcC
Confidence            4456666777877766665443321         11111  01238899998885432      4778888888888875


Q ss_pred             C----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC
Q psy3048         101 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT  176 (367)
Q Consensus       101 d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  176 (367)
                      +    +++|.++|+++|+++++|++|.+.............++ ..|++  +..|.++.....|+++.++.  +...+. 
T Consensus       183 ~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~-~pdi~--t~sK~l~~G~~ig~~~~~~~--~~~~~~-  256 (375)
T PRK04260        183 ADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI-EPDIF--TLAKGLANGVPVGAMLAKSS--LGGAFG-  256 (375)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC-CCCEE--EecccccCCcceEEEEEcHH--HHhhcC-
Confidence            4    89999999999999999999975432211111111223 24644  56898875556788887532  211111 


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                           ... .     ...|                                  .+....+....+.++.+..++   ..+
T Consensus       257 -----~~~-~-----~~t~----------------------------------~~~~~~~~aa~a~l~~~~~~~---~~~  288 (375)
T PRK04260        257 -----YGS-H-----GSTF----------------------------------GGNKLSMAAASATLDIMLTAG---FLE  288 (375)
T ss_pred             -----CCC-C-----CCCC----------------------------------CcCHHHHHHHHHHHHHHHhhH---HHH
Confidence                 000 0     0000                                  011122233444454443333   333


Q ss_pred             HHHHHHHHHHHHh----cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCC
Q psy3048         257 KHISLAKKFADLV----EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPET  332 (367)
Q Consensus       257 ~~~~la~~l~~~L----~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~  332 (367)
                      +.++..+++++.|    .+.+.+.-+. .....+.+.+..   ...++.+++.++|+. +.+   .+...+|+++ +...
T Consensus       289 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~~~~~l~~~Gi~-v~~---~~~~~lR~~~-~~~~  359 (375)
T PRK04260        289 QALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTA---DLSQLVEAARDKGLI-VLT---AGTNVIRLLP-PLTL  359 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecC---cHHHHHHHHHhCCCE-Eec---CCCCEEEEcC-CCcc
Confidence            4444445544444    4443222221 123344554422   256888999999964 332   2446899965 4666


Q ss_pred             CHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQ  347 (367)
Q Consensus       333 ~~edid~li~~l~~~  347 (367)
                      +++|++++++.|+++
T Consensus       360 t~~~i~~~l~~l~~~  374 (375)
T PRK04260        360 TKEEIEQGIAILSEV  374 (375)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            799999999999875

>KOG0053|consensus

Probab=99.31  E-value=1.9e-10  Score=108.04  Aligned_cols=229  Identities=17%  Similarity=0.171  Sum_probs=149.4

Q ss_pred             HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccc
Q psy3048          48 IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL  127 (367)
Q Consensus        48 ~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~  127 (367)
                      ..+|++...++++     ++++++++++++++      +|-+-.|+||+..+-||++|.++||++|+.++||...+.+..
T Consensus       138 ~~~gie~~~vd~~-----~~~~~~~~i~~~t~------~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~  206 (409)
T KOG0053|consen  138 PKFGGEGDFVDVD-----DLKKILKAIKENTK------AVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN  206 (409)
T ss_pred             HHhCceeeeechh-----hHHHHHHhhccCce------EEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence            3578888888876     88999999998774      899999999999999999999999999999999999987633


Q ss_pred             cChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccC
Q psy3048         128 LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKAL  205 (367)
Q Consensus       128 ~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~  205 (367)
                       .+...   -   .||+++.|..||+++-..  .|.++.+..+...+... ...++...                     
T Consensus       207 -~~pL~---l---GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~-~~~~lg~~---------------------  257 (409)
T KOG0053|consen  207 -QDPLP---L---GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF-LQEDLGWC---------------------  257 (409)
T ss_pred             -cChhh---c---CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH-HHHHhcCC---------------------
Confidence             32221   1   269999999999997644  34444443433322110 00111110                     


Q ss_pred             CCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-EeCC----
Q psy3048         206 GLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFE-LVCP----  280 (367)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~-~~~~----  280 (367)
                                                  ..++.++..++  |.+-+.-++++..+++..+.+.|.+.|.++ ++.|    
T Consensus       258 ----------------------------~~p~~~~ll~R--glktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~S  307 (409)
T KOG0053|consen  258 ----------------------------EDPFDLFLLSR--GLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPS  307 (409)
T ss_pred             ----------------------------CCHHHHHHHhc--CcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCC
Confidence                                        12233343333  444455566778888888888888888776 4443    


Q ss_pred             -C-----------CceeEEEEEcCCchHHHHHHHHHhcc------CcEE---EEE---eEE--------C--CeeEEEEE
Q psy3048         281 -P-----------SMGLVCFRLKGDNDLTNQLYERLMSH------KQIY---IIK---ASF--------Q--GRPFLRFV  326 (367)
Q Consensus       281 -~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~------g~~~---~~~---~~~--------~--~~~~lRi~  326 (367)
                       |           ..+.++|...+..+.++++++.|.--      |.+.   ..|   +.+        .  .++.+|+|
T Consensus       308 hp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~~~e~~~~~Gi~~~LVRvS  387 (409)
T KOG0053|consen  308 HPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHASELEEREKFGIDPNLVRVS  387 (409)
T ss_pred             CccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhhhcccCcCccchhhcchhhhccCCCHHHHHhcCCCCCcEEEE
Confidence             1           24556676655445556677765422      2110   000   111        1  26689998


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.     -||++.+++.|.++++.+
T Consensus       388 VG-----iEd~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  388 VG-----IEDIEDLIKDFQQALEKA  407 (409)
T ss_pred             ec-----cCCHHHHHHHHHHHHHhh
Confidence            74     378888898888887764

>PRK07049 methionine gamma-lyase; Validated

Probab=99.31  E-value=5.1e-10  Score=109.15  Aligned_cols=248  Identities=15%  Similarity=0.128  Sum_probs=153.2

Q ss_pred             EEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..+......+    ...|++++.++.    ..|+++|++++++..++. .+.+|.+..++|++|.+-|+++|.+
T Consensus       124 ~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~----~~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~  198 (427)
T PRK07049        124 VILHSQPLYGGTETLLAKTFRNFGVGAVGFAD----GLSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRR  198 (427)
T ss_pred             EEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC----CCCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHH
Confidence            4556666776665543    456888766652    147888988886542111 2458888899999999999999999


Q ss_pred             HHhh------cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC--cceeEEEecchhhhhhccCCcc
Q psy3048         108 ICQE------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH--DCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       108 l~~~------~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +++.      +++++++|+++.......+ .   .   ..+|+++.+..|++++..  .+|+++. +++..+..... ..
T Consensus       199 la~~~~~~~~~~~~vvvDety~~~~~~~p-l---~---~g~divv~S~SK~~gG~~glr~G~vv~-~~~l~~~l~~~-~~  269 (427)
T PRK07049        199 VADAIEARQGHRPIIACDNTLLGPVFQKP-L---E---HGADLSVYSLTKYVGGHSDLVAGAVLG-RKALIRQVRAL-RS  269 (427)
T ss_pred             HHHHhhhcccCCCEEEEECCccccccCCc-c---c---cCCCEEEEcCceeecCCCCcEEEEEEC-CHHHHHHHHHH-HH
Confidence            9998      8999999999765432111 1   1   135999999999999543  3555443 33333221100 00


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      .+                                                 +.....+..|+.++.  .+.+..++++..
T Consensus       270 ~~-------------------------------------------------g~~ls~~~a~l~~r~--L~tl~~R~~~~~  298 (427)
T PRK07049        270 AI-------------------------------------------------GTQLDPHSCWMLGRS--LETLVLRMERAN  298 (427)
T ss_pred             hc-------------------------------------------------CCCCCHHHHHHHHcC--CChHHHHHHHHH
Confidence            00                                                 000112344544443  345677788889


Q ss_pred             HHHHHHHHHhcCCCCeE-EeCCC------------------CceeEEEEEcCCchHHHHHHHHHhccC---------cEE
Q psy3048         260 SLAKKFADLVEKDDRFE-LVCPP------------------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIY  311 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~-~~~~~------------------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~  311 (367)
                      +.++.+.+.|+++|++. +..|.                  ..++++|.+.+..+...++.+.|.--.         ...
T Consensus       299 ~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli  378 (427)
T PRK07049        299 RNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLA  378 (427)
T ss_pred             HHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCcee
Confidence            99999999999998865 33331                  135889998753333456666553211         011


Q ss_pred             EEEe--EE----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         312 IIKA--SF----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       312 ~~~~--~~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      ..+.  .+          .  .++.+|+|+.     -||++.+++.|++.++
T Consensus       379 ~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-----lE~~~dl~~dl~~al~  425 (427)
T PRK07049        379 SHPASMTHSGVPADVRERIGVLESTIRLSIG-----IEHPDDLIADLAQALD  425 (427)
T ss_pred             eCCCccccccCCHHHHHhcCCCcCeEEEEeC-----cCCHHHHHHHHHHHHh
Confidence            1111  00          1  1458999874     3689999999998875

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.30  E-value=1.4e-09  Score=105.76  Aligned_cols=225  Identities=10%  Similarity=0.088  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++.+++.+++.......+.+|++.-.....|.+    +-+++|.++|++||+++++|+.++++......+.....++ .
T Consensus       177 ~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~  255 (412)
T TIGR02407       177 TIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-E  255 (412)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC-C
Confidence            4677888886432111123455555555556663    4679999999999999999999976433221111111233 4


Q ss_pred             cceeeecccccccc-CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++++  |++++ ...+|+++.++.  + ..+.  +..  ..        ..|                         
T Consensus       256 PDi~~~~--K~lg~~G~pigav~~~~~--~-~~~~--~~~--~~--------~T~-------------------------  293 (412)
T TIGR02407       256 PDIVCLS--KSISGYGLPLALTLIKPE--L-DVWK--PGE--HN--------GTF-------------------------  293 (412)
T ss_pred             CCEEEec--hhccCCccceeEEEEchh--h-hccC--CCc--cC--------CCC-------------------------
Confidence            5877765  99875 555888888543  2 1111  000  00        000                         


Q ss_pred             CccccccccccccccHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCC-ceeEEEEEcCCc
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRS-YGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPS-MGLVCFRLKGDN  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~-~~~v~f~~~~~~  294 (367)
                               .+.........+.++. +..+   ++.++..++.+++.++|+.    .+++. ...+. -.++.+.++. .
T Consensus       294 ---------~gnpl~~aaa~a~l~~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~l~l~~-~  359 (412)
T TIGR02407       294 ---------RGNNLAFVTATAALEYYWSDD---AFEKAVQRKSEIIQERLDRIVAEYPELI-KQVRGRGLMQGIECGD-G  359 (412)
T ss_pred             ---------CccHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHhhCCCce-EeeecceeEEEEEecC-h
Confidence                     0111111233445553 3332   3445566666666666653    43322 22222 2344666654 3


Q ss_pred             hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         295 DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       295 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ....++.+.+.++|.+ +.+... ....+|+++ ....+++|++++++.|++.+++
T Consensus       360 ~~~~~~~~~~~~~Gv~-v~~~~~-~~~~lr~~p-~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       360 DLAGKIAKAAFENGLI-IETSGP-NDEVIKLLP-PLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             HHHHHHHHHHHHCCCE-EeccCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHhC
Confidence            3456888899999954 433221 235799965 5778899999999999998753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.29  E-value=1.6e-09  Score=105.06  Aligned_cols=223  Identities=14%  Similarity=0.096  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-C----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-D----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      |++.|++++++.      .+..++..|...+|.+ .    -+.+|.++|++||+++++|++|+++......+.....++ 
T Consensus       175 d~~~l~~~~~~~------~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-  247 (408)
T PRK04612        175 DVEALEAAMAGG------DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQV-  247 (408)
T ss_pred             CHHHHHHhhCCC------CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCC-
Confidence            788998888532      1344455555555544 2    289999999999999999999976433221111111122 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|+.+  ..|.+++...+|+++.++. .. ..+..       ...     .                            
T Consensus       248 ~pdi~t--~~K~l~~G~piga~~~~~~-~~-~~~~~-------~~~-----~----------------------------  283 (408)
T PRK04612        248 TPDIVT--LAKALGGGFPIGAMLAGPK-VA-ETMQF-------GAH-----G----------------------------  283 (408)
T ss_pred             CCCEEE--EcchhcCCCceEEEEECHH-HH-hhhcC-------CCc-----C----------------------------
Confidence            235444  4788876566788776532 22 11110       000     0                            


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CC-ceeEEEEEcCC-chH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PS-MGLVCFRLKGD-NDL  296 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~-~~~v~f~~~~~-~~~  296 (367)
                           .+. .+....+....+.|+.+..   .++.++..++.+++.++|+++. .+.++.. .. -.++.+.+... ...
T Consensus       284 -----~t~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~  354 (408)
T PRK04612        284 -----TTF-GGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQ  354 (408)
T ss_pred             -----CCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhH
Confidence                 000 0111223344444554433   3556778888888888887642 1222221 12 22333433221 233


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      ...+.+.+.++|.+ +.+   .+...+|+++ +...+++||+.+++.|++.++++.+
T Consensus       355 a~~i~~~l~~~Gvl-v~~---~g~~~lRl~P-pl~it~eeid~~l~~l~~~l~~~~~  406 (408)
T PRK04612        355 AGAILDLAAEHGLL-LLQ---AGPDVLRFVP-ALNLTDAELADGLARLRLALADYVA  406 (408)
T ss_pred             HHHHHHHHHHCCeE-Eee---CCCCEEEEcC-CccCCHHHHHHHHHHHHHHHHHHhh
Confidence            56788889999954 332   3446899954 6678899999999999999887543

>KOG0257|consensus

Probab=99.28  E-value=1.3e-10  Score=108.18  Aligned_cols=130  Identities=9%  Similarity=-0.009  Sum_probs=98.9

Q ss_pred             cCceEEEecCCcchhHHHHHHhCCcceEEEecC--------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc
Q psy3048          28 KSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF   99 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i   99 (367)
                      +++.||+. +..+.+......+.|..++.|+..        .++.+|++.|+.++.+.|+      +|+++.|+|++|-+
T Consensus       116 ~GDeVii~-eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk------~Ii~ntPhNPtGkv  188 (420)
T KOG0257|consen  116 PGDEVIVF-EPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTK------AIILNTPHNPTGKV  188 (420)
T ss_pred             CCCEEEEe-cCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCcc------EEEEeCCCCCcCcc
Confidence            34555554 567777777888899999998875        4799999999999999885      89999999999988


Q ss_pred             ---CChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeecccccccc-CCcceeEEE
Q psy3048         100 ---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLT-NHDCSAMWV  164 (367)
Q Consensus       100 ---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~  164 (367)
                         +.|++|++||++||++++.|++|....+...++..  .++|+...-+=+.|..|.++. ++.+||++.
T Consensus       189 fsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~ig  259 (420)
T KOG0257|consen  189 FSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIG  259 (420)
T ss_pred             cCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeec
Confidence               68999999999999999999998776654431111  124443334455667887654 577888777

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.28  E-value=6e-10  Score=115.12  Aligned_cols=258  Identities=10%  Similarity=0.011  Sum_probs=151.9

Q ss_pred             ceEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +..|++++..|+.....++.    .|++++.           +++++.+++++      ..|++.+|++ .|.+.|+++|
T Consensus       168 ~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~~~~~~~~~------~~v~vq~P~~-~G~i~d~~~i  229 (954)
T PRK12566        168 SNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAVDNLAAHAV------FGALLQYPDT-HGEIRDLRPL  229 (954)
T ss_pred             CCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cchhhcCCCCE------EEEEEECCCC-ceEEccHHHH
Confidence            45688899999997776543    5666653           33444443333      4677888754 8999999999


Q ss_pred             HHHHhhcCcEEEEecccc--cccccChhhhhhhCCCCCcceeeeccccc----cccCCcceeEEEecchhhhhhccCCcc
Q psy3048         106 GPICQEYNIWLHVDAAYA--GSALLLPEYAHLKRGLEYVDSFAFNAHKW----LLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~--~~~~~~~~~~~~~~~~~~~D~~~~~~hK~----l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      .+++|+.|++++ +++--  .+.+- ++..   .   .+|+++.+++.+    .+++++.|++.+++.  +.+.+  ...
T Consensus       230 ~~~~h~~gal~~-~~~d~laL~ll~-~Pge---~---GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~--~~R~~--PGR  297 (954)
T PRK12566        230 IDQLHGQQALAC-VAADLLSLLVLT-PPGE---L---GADVVLGSTQRFGVPMGYGGPHAAYFACRDD--YKRAM--PGR  297 (954)
T ss_pred             HHHHHHcCCEEE-EEeCHHHHhCCC-Chhh---c---CCcEEeeCCCcCCCCCCCCCCCeeeeeehHH--HHhhC--CCC
Confidence            999999999855 54432  22221 1111   1   359997766543    333456777777543  32221  111


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc---ccccccccc-ccHHHHHHHHHHhhHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ---HWQTPLSRR-FRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                      .++.....  .....|.+.             +.    .-.|+|+   .-...|++. ..++....++-.+|.+|++++.
T Consensus       298 ivG~s~D~--~G~~a~~l~-------------Lq----tREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia  358 (954)
T PRK12566        298 IIGVSRDA--RGNTALRMA-------------LQ----TREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIA  358 (954)
T ss_pred             ccceeecC--CCCeeeehh-------------hh----HHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            11111100  111122000             00    0000110   011112221 1122223344567999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      ++...++.|+.+.|.+ .|+++..++.+..+.+++..   ...++.++-.++|.-. -.  . +...+.+|+ .-.++.+
T Consensus       359 ~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~~---~~~~~~~~a~~~~~n~-r~--~-~~~~~~~s~-de~~~~~  429 (954)
T PRK12566        359 QRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVGG---AQAAIIESAEAARINL-RI--L-GRGRLGVSL-DETCDEA  429 (954)
T ss_pred             HHHHHHHHHHHHHHHh-cCCccccCCccceEEEEccC---CHHHHHHHHHHCCCee-EE--e-CCCeEEEEe-CCCCCHH
Confidence            9999999999999999 69998877778888887731   2557777777777432 11  1 234677866 5677899


Q ss_pred             HHHHHHHHHH
Q psy3048         336 DVAFAWNEIS  345 (367)
Q Consensus       336 did~li~~l~  345 (367)
                      |++.+++.+.
T Consensus       430 ~~~~~~~~f~  439 (954)
T PRK12566        430 TVARLFDIFL  439 (954)
T ss_pred             HHHHHHHHhc
Confidence            9999999984

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.27  E-value=4.4e-10  Score=109.62  Aligned_cols=263  Identities=17%  Similarity=0.137  Sum_probs=166.4

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecC--C----CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--D----NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~----~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      +.-.|++++++|.|...+..+.|+.++++.+.  +    -+.++.+.+++++.+.....   ++++++.+ |+.|++.++
T Consensus       109 ~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitnp-TYdGv~~n~  184 (557)
T COG1982         109 PGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITNP-TYDGVCYNL  184 (557)
T ss_pred             CCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEecC-ccceEeecH
Confidence            45567889999999999999999999998763  2    27899999999987665311   35666654 889999999


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhh-hhccCCccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT-NTFFTDRVY  180 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~~~~~y  180 (367)
                      ++|.+.++.+++|+.+|.+|+...-..+....  ... ..+|+.+-|.||.+.+-..++.+.+++...+. +.+  +..|
T Consensus       185 ~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~--~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~--nea~  260 (557)
T COG1982         185 RKIVELLHHYGAWVLYDEAHPAHFDFSPMLPE--SALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERF--NEAL  260 (557)
T ss_pred             HHHHHHHhhcCceEEhhhcCcccccccccCcc--hhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHH--HHHH
Confidence            99999999999999999999886655443322  111 23599999999999999999999998631111 111  0111


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh---hHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY---GLKGLQAYLRK  257 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~g~~~~~~~  257 (367)
                      ....     +++++|-++                                      .++-.+-...   |..-+++-+++
T Consensus       261 ~~h~-----STSPsY~l~--------------------------------------ASlD~Ar~~~~~~G~~l~~~~~~~  297 (557)
T COG1982         261 MMHQ-----STSPSYPLM--------------------------------------ASLDVARMQEGNAGRELWQEVIDE  297 (557)
T ss_pred             HHHc-----cCCchHHHH--------------------------------------HHHHHHHHhhhhhhHHHHHHHHHH
Confidence            1111     234444111                                      1111111122   33334444777


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCC---------------------ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPS---------------------MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS  316 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~---------------------~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~  316 (367)
                      ..+.++++++...++++|+++.++.                     -.-+++..+........+.+.|.++|++..-.+.
T Consensus       298 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~~~d  377 (557)
T COG1982         298 AIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEETGD  377 (557)
T ss_pred             HHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeeecCC
Confidence            8888999999999988888887542                     1222333322223345777778888865332221


Q ss_pred             ECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         317 FQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       317 ~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      ..  ..+=+++ .......+++.+++.++
T Consensus       378 ~~--~lll~~~-~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         378 YS--NLLLFSP-GIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             ce--eeEEeee-ccchHHHHHHHHHHHHH
Confidence            11  1222222 11345677777777766

>PRK06541 hypothetical protein; Provisional

Probab=99.27  E-value=4.8e-09  Score=103.25  Aligned_cols=229  Identities=15%  Similarity=0.123  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      +.+++.++..  +.....+|++.-..++.|.+.|    +++|.++|++||+++++|++|.++......+.....++ ..|
T Consensus       208 ~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PD  284 (460)
T PRK06541        208 DRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPD  284 (460)
T ss_pred             HHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCC
Confidence            5666666532  1122345555555677788888    99999999999999999999955433222211111233 358


Q ss_pred             eeeeccccccccCC-cceeEEEecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         144 SFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       144 ~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      +++  .-|.+.+.+ ..|.++.+++. .. .+... ..+....                                     
T Consensus       285 ivt--~gK~l~~G~~pigav~~~~~i-~~-~~~~~~~~~~~~~-------------------------------------  323 (460)
T PRK06541        285 IIT--CAKGITSGYSPLGAMIASDRL-FE-PFLDGPTMFLHGY-------------------------------------  323 (460)
T ss_pred             EEE--ecccccCCccceeEEEEcHHH-HH-HhhcCCCccccCC-------------------------------------
Confidence            775  578887654 47777775432 21 11111 0111000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCC------
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGD------  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~------  293 (367)
                           +. .+....+....+.++.+..+   +..++..++.++|.+.|+++....++..  ..-.+..+.+..+      
T Consensus       324 -----T~-~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~  394 (460)
T PRK06541        324 -----TF-GGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKET  394 (460)
T ss_pred             -----CC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccC
Confidence                 00 01111223333444444333   3456788888999888877632222111  1112223333210      


Q ss_pred             --ch-----HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 --ND-----LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 --~~-----~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                        ..     ....+.+.+.++|. ++.+. ..+...+|+++ ....+++|||.++++|++.++++-
T Consensus       395 ~~~~~~~~~~~~~~~~~l~~~Gi-~~~~~-~~g~~~lrl~P-pl~~t~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06541        395 FTDDESERLLRGFLSPALFEAGL-YCRAD-DRGDPVVQLAP-PLISGQEEFDEIEQILRSVLTEAW  457 (460)
T ss_pred             CcchhhhhhHHHHHHHHHHhCCe-EEEec-CCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence              00     11356778888884 44432 23446899965 466789999999999999988654

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.27  E-value=7.3e-09  Score=101.22  Aligned_cols=226  Identities=14%  Similarity=0.114  Sum_probs=131.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |.+++++.+++...++.....|++.-....-|.+.|    +++|.++|++||+.+++|++|.++.....-+.....++ .
T Consensus       207 d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~  285 (442)
T TIGR03372       207 DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV-Q  285 (442)
T ss_pred             CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC-C
Confidence            678888888654333334556666666666788888    99999999999999999999966432221111112244 4


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++  .-|.+++. ..+|.++.++ +.. ..+. ..++....                                    
T Consensus       286 PDivt--~gK~lg~G~~Pigavv~~~-~i~-~~~~-~~~~~~~~------------------------------------  324 (442)
T TIGR03372       286 PDILC--LAKALGGGVMPIGATIATE-AVF-SVLF-DNPFLHTT------------------------------------  324 (442)
T ss_pred             CCeee--ehhhhcCCcccceEEEecH-HHH-Hhhh-ccCccccC------------------------------------
Confidence            58776  47888764 2467777643 222 2111 01111000                                    


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeE-EeCC-C-CceeEEEEEcCCchH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFE-LVCP-P-SMGLVCFRLKGDNDL  296 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~-~~~~-~-~~~~v~f~~~~~~~~  296 (367)
                             +-.+....+.+..+.|+.+..++   +.++..++.++++++|+++. .+. .+.. . ...++.+.+.. +..
T Consensus       325 -------T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~-~~~  393 (442)
T TIGR03372       325 -------TFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRD-NEI  393 (442)
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCC-hHH
Confidence                   00111122344445565554433   44566777888887776541 111 1111 1 22344455543 334


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ...+.+.+.++|.+ +.+.. .+...+|+.+ ....|++|+|+++++|++.
T Consensus       394 ~~~i~~~l~~~Gvl-~~~~~-~~~~~lr~~P-pl~~t~~~id~~~~~l~~~  441 (442)
T TIGR03372       394 GYAFAKELFQQNIL-VAGTL-NNAKSIRIEP-PLTITIEQCALVIKAAKDA  441 (442)
T ss_pred             HHHHHHHHHHCCcE-EeecC-CCCCEEEEEC-CcccCHHHHHHHHHHHHHh
Confidence            56788889999854 43221 1235899965 5667899999999999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.26  E-value=4.6e-09  Score=102.99  Aligned_cols=229  Identities=11%  Similarity=0.096  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++++|++.++.... .....+|++.-.....|.+.|    +++|.++|++||+++++|++|+++......+.....++ .
T Consensus       191 ~~~~l~~~~~~~~~-~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv-~  268 (433)
T PRK08117        191 CLRDLESLFKHQVT-PEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV-V  268 (433)
T ss_pred             HHHHHHHHHHhccC-CCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCC-C
Confidence            56667777754211 122456666666667788888    99999999999999999999986433221111111123 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+  .+.-|.+++...+|+++.++ +... .+.  ..     ..   .                               
T Consensus       269 pDi--~t~sK~lg~G~pigav~~~~-~i~~-~~~--~~-----~~---~-------------------------------  303 (433)
T PRK08117        269 PDI--MTIAKGIASGLPLSAVVASK-ELME-QWP--LG-----SH---G-------------------------------  303 (433)
T ss_pred             CCE--eehhhhccCCCcceeEEEcH-HHHh-hcc--CC-----CC---C-------------------------------
Confidence            465  45688888655577777643 2222 110  00     00   0                               


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeC-CCCce-eEEEEEcC-----C
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVC-PPSMG-LVCFRLKG-----D  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~-~~~~~-~v~f~~~~-----~  293 (367)
                          .+. .++.+.+.+..++|+.+..+   ++.++..++.++++++|+++. ...++. .+..+ ++.+.+..     .
T Consensus       304 ----~T~-~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~  375 (433)
T PRK08117        304 ----TTF-GGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPD  375 (433)
T ss_pred             ----CCC-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcc
Confidence                000 01112233444455544332   455667777888888776642 111111 12222 22333321     1


Q ss_pred             chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ......+.+.+.++|.++.. .. ....++|+++ ....+++||++++++|+++++++.
T Consensus       376 ~~~~~~~~~~l~~~Gv~~~~-~g-~~~~~lRl~p-~~~~t~~~i~~~~~~l~~~l~~~~  431 (433)
T PRK08117        376 GDAVEKILDKCLEKGLLFYL-CG-NAGNVLRMIP-PLTVTKEEIDEGLDILDEALTEYE  431 (433)
T ss_pred             hHHHHHHHHHHHHCCCEEee-cC-CCCCEEEEeC-CccCCHHHHHHHHHHHHHHHHHHh
Confidence            23345778888889965432 11 1246899965 456689999999999999988764

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.25  E-value=4.3e-09  Score=104.51  Aligned_cols=286  Identities=10%  Similarity=0.022  Sum_probs=155.0

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCC-----
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGV-----   64 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~-----   64 (367)
                      .||++||.+.... +.  +       ..+.+|......|-+...++...|..            +..++.+..++     
T Consensus       166 ~AlKlAr~~~~~~-g~--~-------~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  235 (504)
T PLN02760        166 TQVKLVWYYNNAL-GR--P-------NKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPG  235 (504)
T ss_pred             HHHHHHHHHHHhc-CC--C-------CCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCC
Confidence            4788888775321 10  1       12445666777888876666554431            22233221111     


Q ss_pred             --------cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhh
Q psy3048          65 --------LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEY  132 (367)
Q Consensus        65 --------~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~  132 (367)
                              ...++|++.+....  ...+..|++.-.....|.+.|    +++|.++|++||+++++|+++.++.....-+
T Consensus       236 ~~~~~~~~~~~~~le~~l~~~~--~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~  313 (504)
T PLN02760        236 ETEEEFSTRLADNLENLILKEG--PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF  313 (504)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhh
Confidence                    11245676664321  123455666655566688888    9999999999999999999996654333222


Q ss_pred             hhhhCCCCCcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchh
Q psy3048         133 AHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEF  211 (367)
Q Consensus       133 ~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (367)
                      .....++ ..|++++  -|.+++.+ .+|.++.++ +.. ..+...........                          
T Consensus       314 a~e~~gv-~PDivtl--gK~lggG~~PigAv~~~~-~i~-d~~~~~~~~~~~~~--------------------------  362 (504)
T PLN02760        314 GCDKYNI-KPDLVSL--AKALSSAYMPIGAVLVSP-EIS-DVIHSQSNKLGSFA--------------------------  362 (504)
T ss_pred             HHHhcCC-CCcEEEe--cccccCCccccceEeecH-HHH-hhhhcccccccCcc--------------------------
Confidence            2222344 3687655  68877642 466666643 222 11110000000000                          


Q ss_pred             ccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCc-eeEEEE
Q psy3048         212 LNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSM-GLVCFR  289 (367)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~-~~v~f~  289 (367)
                                  ...+.. +....+.+..+.|+.+..+   ++.++..++.++|++.|+++....++.. ... .++.+.
T Consensus       363 ------------h~~T~~-gnPl~~Aaala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie  426 (504)
T PLN02760        363 ------------HGFTYS-GHPVSCAVALEALKIYKER---NIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTE  426 (504)
T ss_pred             ------------cCCCCC-CCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEE
Confidence                        000111 1112233444455555433   4567788888898888876532222211 111 233333


Q ss_pred             EcCC----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         290 LKGD----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       290 ~~~~----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +...          ......+.+.+.++|.+ +.+   .+ ..+|+++ ....+++|||+++++++++++++.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl-~~~---~g-~~lrl~P-pl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        427 FVDNKSPNDPFPAEWGVGAYFGAECKKRGML-VRV---AG-DNIMMSP-PLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             EecCCcccccccchhHHHHHHHHHHHhCCcE-EEe---cC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3221          01245677888889954 322   23 4689965 456789999999999999888764

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.23  E-value=5.9e-09  Score=100.31  Aligned_cols=227  Identities=13%  Similarity=0.077  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      .+.+++.+.+.......+..+++--....-|.+.|    ++++.++|++||+++++|+.|.++.....-+.+...++ ..
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~P  284 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-EP  284 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-CC
Confidence            34456656555555566778888877777787743    68999999999999999999988765443333333444 56


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |+++++  |.+++..-.|.++.+.+  +....        .+.                                     
T Consensus       285 Divt~a--K~ig~G~Pl~avv~r~e--i~~~~--------~g~-------------------------------------  315 (447)
T COG0160         285 DIVTLA--KSLGGGLPLSAVVGRAE--IMDWP--------PGG-------------------------------------  315 (447)
T ss_pred             CEEEec--ccccCCCceeEEeccHH--hcccC--------Ccc-------------------------------------
Confidence            887764  77776666777777543  11000        000                                     


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCCC-Cce-eEEEEEc-------C
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCPP-SMG-LVCFRLK-------G  292 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~~-~~~-~v~f~~~-------~  292 (367)
                       ..++ -.++...+.+..+.|+.+..+   ++.++..++.+|++++|.++. .+.++.+. ..+ ++.+.+.       +
T Consensus       316 -~~~T-f~GNpva~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p  390 (447)
T COG0160         316 -HGGT-FGGNPVACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEP  390 (447)
T ss_pred             -cCCC-CCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCC
Confidence             0001 122223344555556655554   566788899999999987652 34455542 222 2222222       1


Q ss_pred             CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         293 DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       293 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .......+++++.++|.+....+.  ..+++||.+ ..-.+++++|.+++.|++.++++
T Consensus       391 ~~~~~~~i~~~~~~~Glil~~~G~--~~nviRi~P-PL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         391 DAELAAKIVARAFERGLLLLTCGP--HGNVLRILP-PLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             CHHHHHHHHHHHHHcCCEEeccCC--CCcEEEEeC-CcccCHHHHHHHHHHHHHHHHhh
Confidence            125567889999999965443221  246999955 56678999999999999998764

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.20  E-value=2.3e-08  Score=98.05  Aligned_cols=228  Identities=13%  Similarity=0.041  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++.+++.++... .+.....|++.-..+++|.+-|    +++|.++|++||+++++|++|+++......+.....++ ..
T Consensus       189 ~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~-~p  266 (443)
T PRK08360        189 VEYIKEKFEGEV-YAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV-EP  266 (443)
T ss_pred             HHHHHHHHHhcc-CCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC-CC
Confidence            345566664321 1123456666655577887754    89999999999999999999986543222111111233 34


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++++  .|.++....+|+++.+. +... .+..       ...     .                              
T Consensus       267 Diitl--sK~l~~G~pigav~~~~-~i~~-~~~~-------~~~-----~------------------------------  300 (443)
T PRK08360        267 DIITL--GKPLGGGLPISATIGRA-EIMD-SLPP-------LAH-----A------------------------------  300 (443)
T ss_pred             CEEEe--cccccCCceeEEEEEcH-HHHh-hhcC-------CCC-----C------------------------------
Confidence            76655  89888655678877743 2222 1110       000     0                              


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD------  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~------  293 (367)
                         ++. .+....+....++++.+..+   ++.++..++.+++++.|+++. ...++.. ... .++.+.+..+      
T Consensus       301 ---~T~-~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~  373 (443)
T PRK08360        301 ---FTL-SGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKER  373 (443)
T ss_pred             ---CCC-CcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCc
Confidence               000 01112233444555554433   345677777788877776531 1111111 112 2333333211      


Q ss_pred             -chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       294 -~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                       ......+.+++.++|.+ +.+.   +...+|+++ ....+++|||.+++++++.++++.+.
T Consensus       374 ~~~~~~~~~~~l~~~Gi~-~~~~---~~~~lr~~P-~l~~t~~~id~~~~~l~~~l~~~~~~  430 (443)
T PRK08360        374 AYEEAAKVVWRAWELGLI-VTFF---SGNVLRIQP-PLTIEKEVLDEGLDILEEAIEDVEEG  430 (443)
T ss_pred             cHHHHHHHHHHHHHCCeE-Eeec---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence             12345788889999943 4321   236899965 56778999999999999999887543

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.20  E-value=1.4e-08  Score=99.53  Aligned_cols=207  Identities=12%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ..+|++.-.....|.+.|    +++|.++|++||+++++|+++.++.....-+.....++ ..|+++++  |.++++...
T Consensus       222 iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv-~pDivt~~--K~l~~G~p~  298 (441)
T PRK05769        222 VAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV-EPDIITLA--KAIAGGLPL  298 (441)
T ss_pred             eEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC-CCCEEEEc--ccccCCccc
Confidence            456666666666788888    99999999999999999999986432221111111233 35887754  877766667


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |+++.++.- . ...   .     ...   .                                   .+. .+......+.
T Consensus       299 gav~~~~~i-~-~~~---~-----~~~---~-----------------------------------~T~-~g~p~~~aaa  329 (441)
T PRK05769        299 GAVIGRAEL-M-FLP---P-----GSH---A-----------------------------------NTF-GGNPVAAAAA  329 (441)
T ss_pred             EEEEEehhh-h-hcC---C-----CCC---C-----------------------------------CCC-CcCHHHHHHH
Confidence            777765431 1 110   0     000   0                                   000 0111222344


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC-----chHHHHHHHHHhccCcEE
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD-----NDLTNQLYERLMSHKQIY  311 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~-----~~~~~~l~~~L~~~g~~~  311 (367)
                      .++|+.+..    +..++..++.++|++.|+++. .+.++.. ... .++.+.+...     ......+.+.+.++|.+ 
T Consensus       330 ~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil-  404 (441)
T PRK05769        330 LATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLL-  404 (441)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcE-
Confidence            445555433    556677888888888886642 1222211 122 2333444221     12345777888889954 


Q ss_pred             EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         312 IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       312 ~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.+   .+...+|+++ ....+++|||++++++++++.++
T Consensus       405 ~~~---~~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        405 LLG---AGKSAIRIIP-PLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             Eec---CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence            322   2446899965 45678999999999999988753

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.16  E-value=2.1e-08  Score=98.47  Aligned_cols=209  Identities=10%  Similarity=0.020  Sum_probs=117.7

Q ss_pred             EEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      ..|++.-.....|.+.|    +++|.++|++||+++++|+.+.++......+.....++ ..|.++++  |.+++..-+|
T Consensus       221 Aavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi~  297 (443)
T PRK06058        221 AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGI-VPDLITTA--KGIAGGLPLS  297 (443)
T ss_pred             EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCC-CCCEEEEc--ccccCCCccE
Confidence            44544433333455543    99999999999999999999976543322221222234 45888884  8888666688


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++.+++ .. +.+.  ......                                           + -.+....+.+..
T Consensus       298 av~~~~~-i~-~~~~--~~~~~~-------------------------------------------T-~~gnpl~~aaa~  329 (443)
T PRK06058        298 AVTGRAE-IM-DAPH--PGGLGG-------------------------------------------T-YGGNPVACAAAL  329 (443)
T ss_pred             EEEEcHH-HH-hhcc--CCCCCC-------------------------------------------C-CCCCHHHHHHHH
Confidence            8887543 22 1111  000000                                           0 011112223444


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC--CCceeEEEEEcCC------chHHHHHHHHHhccCcEE
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP--PSMGLVCFRLKGD------NDLTNQLYERLMSHKQIY  311 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~--~~~~~v~f~~~~~------~~~~~~l~~~L~~~g~~~  311 (367)
                      +.|+.+..+   ++.++..++.+++.++|+++. ...++..  ..-.++.+.+...      ......+.+.+.++|.+ 
T Consensus       330 a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~-  405 (443)
T PRK06058        330 AAIETIEED---DLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVI-  405 (443)
T ss_pred             HHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeE-
Confidence            445444333   455677777888888886642 1222211  1222333333211      12345677788888854 


Q ss_pred             EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         312 IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       312 ~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +.+.... ..++|+.+ ....+++|||.++++|++++++
T Consensus       406 ~~~~~~~-~~~lr~~P-pl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        406 VLTCGTY-GNVIRLLP-PLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             EeccCCC-CCEEEEEC-CCccCHHHHHHHHHHHHHHHHh
Confidence            4332111 25899965 4567899999999999998765

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.14  E-value=4.6e-08  Score=95.98  Aligned_cols=230  Identities=15%  Similarity=0.156  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      .++|++.++...  .....+|++.-.....|.+.|    +++|.++|++||+++++|++|.++.....-+.....++ ..
T Consensus       204 ~~~l~~~i~~~~--~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv-~P  280 (445)
T PRK09221        204 ADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGV-TP  280 (445)
T ss_pred             HHHHHHHHHhcC--CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCC-CC
Confidence            356777775321  122456667766677788888    99999999999999999999976433222111111233 35


Q ss_pred             ceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |++++  -|.+.+. .-.|.++.++ +... .+...+.+..           .+                    .     
T Consensus       281 Di~~~--gK~l~gG~~Pi~av~~~~-~i~~-~~~~~~~~~~-----------~~--------------------~-----  320 (445)
T PRK09221        281 DIITF--AKGLTNGAIPMGAVIASD-EIYD-AFMQGPEYAI-----------EF--------------------F-----  320 (445)
T ss_pred             CEEEe--ccccccCcccceeeEEcH-HHHH-hhccCccccc-----------cc--------------------c-----
Confidence            76655  5666543 2256666643 2222 1111111000           00                    0     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCcee-EEEEEcC----Cch
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGL-VCFRLKG----DND  295 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~-v~f~~~~----~~~  295 (367)
                        ..++.. +.........+.|+.+..+   ++.++..++.+++++.|+++.+...+.+ ...+. ..+.+..    ...
T Consensus       321 --~~~T~~-~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~  394 (445)
T PRK09221        321 --HGYTYS-AHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGA  394 (445)
T ss_pred             --cccCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccc
Confidence              000111 1112223334555555443   3567888999999998877633222111 12222 2233321    112


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...++.+++.++|. ++..   .+ ..+|+++ ....|++|||++++.|++.++++
T Consensus       395 ~~~~~~~~~~~~Gv-~~~~---~~-~~lr~~P-pl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        395 RGYEAFMKCFEKGL-LVRY---TG-DTIALSP-PLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             hHHHHHHHHHHCCe-EEee---cC-CEEEEEC-CccCCHHHHHHHHHHHHHHHHhh
Confidence            24578888998984 3432   22 4799965 56778999999999999998764

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.14  E-value=2.6e-08  Score=97.84  Aligned_cols=213  Identities=8%  Similarity=0.041  Sum_probs=121.1

Q ss_pred             cEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ...|++.-.....|.+    +-+++|.++|++||+++++|+.+.++......+.....++ ..|++++  -|.++....+
T Consensus       207 iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~~G~Pi  283 (442)
T TIGR00709       207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGI-EPDFVVM--SKAVGGGLPL  283 (442)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCC-CCcEEEE--cccccCCccc
Confidence            3455555555555655    3579999999999999999999887644332222211234 4588884  6887776678


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |+++.+++  +. .+.  ....  .                                          .+-.+..+.+.+.
T Consensus       284 gav~~~~~--~~-~~~--~~~~--~------------------------------------------~T~~gnpla~aaa  314 (442)
T TIGR00709       284 AVLLIAPE--FD-AWQ--PAGH--T------------------------------------------GTFRGNQLAMVTG  314 (442)
T ss_pred             EEEEEchH--Hh-ccC--CCcC--C------------------------------------------CCCCcCHHHHHHH
Confidence            88887543  22 110  0000  0                                          0001111223344


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC-------------chHHHHHHHH
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD-------------NDLTNQLYER  303 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~-------------~~~~~~l~~~  303 (367)
                      .+.|+.+..+   ++.++..++.+++.++|+++. ...++.. ... .++.+.+...             ......+...
T Consensus       315 ~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (442)
T TIGR00709       315 TEALNYWKDD---NLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGA  391 (442)
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHH
Confidence            4555554443   344567777788877776531 2222221 111 2223333211             1134567778


Q ss_pred             HhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         304 LMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       304 L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      +.++|. ++.+... ....+|+.+ ....|++|++.+++++++.++++.++
T Consensus       392 ~~~~Gv-l~~~~~~-~~~~l~~~P-pl~it~~ei~~~~~~l~~~l~~~~~~  439 (442)
T TIGR00709       392 CFENGL-LLETGGR-EGEVFRLLC-PITIDQEECEEGISRFKQAVEEALAE  439 (442)
T ss_pred             HHHCCe-EEeecCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888884 3433221 235899955 56778999999999999998876443

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.14  E-value=5e-08  Score=95.79  Aligned_cols=211  Identities=16%  Similarity=0.148  Sum_probs=119.9

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ..+|++.-.....|.+.|    +++|.++|++||+++++|+++.++......+.....++ ..|++++  -|.+.+...+
T Consensus       208 iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~t~--gK~l~~G~p~  284 (445)
T PRK08593        208 VACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLMSF--GKSLAGGMPM  284 (445)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEeee--cccccCCccc
Confidence            456666666666677767    99999999999999999999865433221111111233 3576654  6777755557


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |+++.++ +..+ .+. ...+.                                            ++. .++...+.+.
T Consensus       285 gav~~~~-~i~~-~~~-~~~~~--------------------------------------------~T~-~~~pl~~aaa  316 (445)
T PRK08593        285 SAIVGRK-EIME-SLE-APAHL--------------------------------------------FTT-GANPVSCAAA  316 (445)
T ss_pred             EEEEEcH-HHHh-hhc-cCCCC--------------------------------------------CCC-CCCHHHHHHH
Confidence            7777753 2222 111 00000                                            000 0111223344


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCce-eEEEEEcC-------CchHHHHHHHHHhccCc
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSMG-LVCFRLKG-------DNDLTNQLYERLMSHKQ  309 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~~-~v~f~~~~-------~~~~~~~l~~~L~~~g~  309 (367)
                      .+.++.+..+   ++.++..++.+++++.|+++. ...++.. ...+ ++.+.+..       .......+...+.++|.
T Consensus       317 ~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv  393 (445)
T PRK08593        317 LATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGV  393 (445)
T ss_pred             HHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCe
Confidence            4555555433   455677777788877776531 1111111 1111 11222211       12234578888889995


Q ss_pred             EEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         310 IYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       310 ~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      + +.+.   +...+|+++ ....|++|||+++++++++++++..
T Consensus       394 ~-~~~~---~~~~lr~~p-~l~~t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        394 V-IIAV---AGNVLRFQP-PLVITYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             E-Eecc---CCCEEEEEC-CCccCHHHHHHHHHHHHHHHHHHhc
Confidence            4 4321   235899965 5677899999999999999988754

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.13  E-value=1.6e-08  Score=98.81  Aligned_cols=223  Identities=12%  Similarity=0.060  Sum_probs=125.2

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+++..   ....+|++....+..|.+.|    +++|.++|++||+++++|++|.++ ...........++ .
T Consensus       183 d~~~l~~~i~~~~---~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~-~  257 (426)
T PRK00062        183 DLEAVEELFEEYG---DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGV-T  257 (426)
T ss_pred             CHHHHHHHHHhCC---CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCC-C
Confidence            7899999886422   12356666656677898888    999999999999999999999765 2221111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++  ..|.+++.+..|+++.+ ++... .+.. ...+..                                      
T Consensus       258 pDi~~--~gK~l~~G~p~ga~~~~-~~i~~-~~~~~~~~~~~--------------------------------------  295 (426)
T PRK00062        258 PDLTT--LGKIIGGGLPVGAFGGR-REIME-QLAPLGPVYQA--------------------------------------  295 (426)
T ss_pred             cchHh--hhhHhhCCCcceeeeEH-HHHHH-hhccCCCceec--------------------------------------
Confidence            36543  46888765556776553 33222 1110 011110                                      


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCC----
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~----  293 (367)
                            ++-.+....+.+..++|+.+..+   +..++..++.+++++.|+++   -++..-......++.+.+...    
T Consensus       296 ------~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~  366 (426)
T PRK00062        296 ------GTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTN  366 (426)
T ss_pred             ------ccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcc
Confidence                  00111112234444555554333   45566777777777777532   033221111223333333211    


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                              ......+.+.+.++|. ++.+.   +...++++   ...+++||+++++.|+++++++
T Consensus       367 ~~~~~~~~~~~~~~i~~~l~~~Gv-~v~~~---~~~~~~~~---~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        367 YADAKKSDTERFARFFHAMLDEGV-YLAPS---QFEAGFVS---AAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             hhhhccccHHHHHHHHHHHHHCCe-EeecC---CcCceeee---ccCCHHHHHHHHHHHHHHHHhh
Confidence                    1234578888999984 44432   22345553   4558999999999999988754

>PRK07678 aminotransferase; Validated

Probab=99.12  E-value=9.1e-08  Score=94.12  Aligned_cols=230  Identities=15%  Similarity=0.120  Sum_probs=124.4

Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF  145 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~  145 (367)
                      +++.++..  +......|++.-.....|.+.|    ++++.++|++||+++++|+.+.++......+.....++ ..|++
T Consensus       202 l~~~~~~~--~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDiv  278 (451)
T PRK07678        202 IDRVMTWE--LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDII  278 (451)
T ss_pred             HHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEE
Confidence            55556422  1223445555544445566654    89999999999999999999976544322111111344 46888


Q ss_pred             eeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc
Q psy3048         146 AFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ  224 (367)
Q Consensus       146 ~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (367)
                      ++  -|.+++. .-+|.++.+++ .. ..+.....+   .         .+                            .
T Consensus       279 t~--gK~lggG~~Pi~av~~~~~-i~-~~~~~~~~~---~---------~~----------------------------~  314 (451)
T PRK07678        279 TM--AKGITSAYLPLSATAVKKE-IY-EAFKGKGEY---E---------HF----------------------------R  314 (451)
T ss_pred             Ee--ecccccCCcceeEEEEcHH-HH-HHHhccCcc---c---------cc----------------------------c
Confidence            77  6877765 35777777543 22 212110000   0         00                            0


Q ss_pred             cccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEeC-CCCc-eeEEEEEcC--------C
Q psy3048         225 HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVC-PPSM-GLVCFRLKG--------D  293 (367)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~g~~~~~-~~~~-~~v~f~~~~--------~  293 (367)
                      ...+-.++...+.+..+.|+.+..+   ++.++..++.++|.+.|+++ ....++. .... .++.+.+..        .
T Consensus       315 h~~T~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~  391 (451)
T PRK07678        315 HVNTFGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPAD  391 (451)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCc
Confidence            0000111212234444555555444   34556777777777776432 1111111 1111 222333321        1


Q ss_pred             chHHHHHHHHHhccCcEEEEEeE---ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 NDLTNQLYERLMSHKQIYIIKAS---FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 ~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ......+.+.+.++|.+ +.+..   ..+...+|+++ ....|++|||+++++++++++++
T Consensus       392 ~~~a~~i~~~l~~~Gv~-~~~~g~~v~~~~~~lrl~P-pl~it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        392 NDKVASVVAACKEKGLI-IGKNGDTVAGYNNVLTLSP-PLVISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             hHHHHHHHHHHHHCCcE-EeecCccccCCCCEEEEEC-CCcCCHHHHHHHHHHHHHHHHhc
Confidence            23346788889999954 43321   12346899965 45668999999999999998764

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.12  E-value=2.3e-08  Score=97.84  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|+++++...   ..+.+|++....+.+|.+.|    +++|.++|++||+++++|++|.++.. ...+.....++ .
T Consensus       181 d~~~l~~~i~~~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~-g~~~~~~~~~~-~  255 (423)
T TIGR00713       181 DLEALEEVFEEYG---EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV-ALGGAQEYFGV-E  255 (423)
T ss_pred             CHHHHHHHHHHcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc-CcchhHHHhCC-C
Confidence            8999999987421   12345555433344788866    79999999999999999999976522 11111111223 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++  +..|.+.+....|+++.++ +... .+.....+. .                                      
T Consensus       256 pDi~--t~sK~l~~G~pig~v~~~~-~i~~-~~~~~~~~~-~--------------------------------------  292 (423)
T TIGR00713       256 PDLT--TLGKIIGGGLPVGAFGGRR-EIME-RLAPEGPVY-Q--------------------------------------  292 (423)
T ss_pred             cchh--hhhhhhcCCCceeeeeEHH-HHHH-hhCcCCCee-e--------------------------------------
Confidence            4654  4688888655578877743 2222 111000000 0                                      


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------  293 (367)
                          .++-.+..+.+.+..++|+.+..++ ++...+....+.+.+.+.+++. ++..-......++.+.+...       
T Consensus       293 ----~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~v~~~~~~~~~~~~  367 (423)
T TIGR00713       293 ----AGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSMFSLFFTEEEVTNYAD  367 (423)
T ss_pred             ----ccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccEEEEEEecCCCCChhh
Confidence                0000111122344445555543332 3333333334444444445554 33221111122333322210       


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                           ......+.+.|.++|. ++.+.   +...+|+++.   .+++|++.+++.|++++++
T Consensus       368 ~~~~~~~~~~~~~~~l~~~Gv-~v~~~---~~~~~~l~~~---~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       368 AKKSDTELFAKFFHEMLDKGV-FLPPS---QFEACFLSAA---HTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             hhcccHHHHHHHHHHHHHCCe-EEecC---CccceeeECC---CCHHHHHHHHHHHHHHHhh
Confidence                 1123467788888884 44332   2235787542   4799999999999998765

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PLN00144 acetylornithine transaminase

Probab=99.11  E-value=6.6e-08  Score=93.17  Aligned_cols=218  Identities=13%  Similarity=0.091  Sum_probs=121.2

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc--CC--hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DN--LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i--~d--l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.++..     .+.+|++.-..++.|..  ++  +++|.++|++||+++++|++++++......+.....++ .
T Consensus       155 d~~~l~~~~~~~-----~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~  228 (382)
T PLN00144        155 NLEAARKLIQKG-----KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV-E  228 (382)
T ss_pred             CHHHHHHhcCCC-----CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC-C
Confidence            789999888431     13455555444553443  34  89999999999999999999987544332211112333 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|  ..+..|.+.....+|+++.+.. ... .+.  .     ...     ..                            
T Consensus       229 PD--i~t~sK~l~~G~pig~v~~~~~-~~~-~~~--~-----~~~-----~~----------------------------  264 (382)
T PLN00144        229 PD--IMTLAKPLAGGLPIGAVLVTEK-VAS-AIN--P-----GDH-----GS----------------------------  264 (382)
T ss_pred             CC--EEEecccccCCcceEEEEEcHH-HHh-ccC--C-----CCC-----CC----------------------------
Confidence            47  4445798887677888887432 221 110  0     000     00                            


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh----cCCCCe-EEeCCCCceeEEEEEcCCchH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV----EKDDRF-ELVCPPSMGLVCFRLKGDNDL  296 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L----~~~~g~-~~~~~~~~~~v~f~~~~~~~~  296 (367)
                           +. .+....+....+.|+.+....+.   ++..++.+++++.|    .+.|.+ .+-.  .-.++.+.+..   .
T Consensus       265 -----T~-~~~pl~~aaa~a~l~~i~~~~~~---~~~~~~g~~l~~~l~~~~~~~~~~~~vrg--~G~~~~l~l~~---~  330 (382)
T PLN00144        265 -----TF-AGGPLVCNAALAVLDKISKPGFL---ASVAKKGEYLRELLRRKLGGNPHVKEVRG--VGLLVGIQLDV---P  330 (382)
T ss_pred             -----CC-CCCHHHHHHHHHHHHHHhhchHH---HHHHHHHHHHHHHHHHHHhhCCCceeeec--CceEEEEEecC---c
Confidence                 00 01112223444445655443333   34444445544444    344322 1111  22333444421   2


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...+.+.+.++|.. +.+.  .....+|+++ ....+++|++.+++.|++++.++
T Consensus       331 ~~~~~~~~~~~Gv~-i~~~--~~~~~lrl~p-~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        331 AGPLVDACRDSGLL-VLTA--GKGDVVRLVP-PLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             cHHHHHHHHHCCeE-Eeec--CCCCEEEEeC-CCccCHHHHHHHHHHHHHHHHhc
Confidence            45788888999954 4333  1136899965 34467999999999999988753

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.11  E-value=6.5e-09  Score=99.21  Aligned_cols=265  Identities=16%  Similarity=0.133  Sum_probs=144.0

Q ss_pred             CCcchhH-HHHHHhCCcceEEEec----------CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCC-ccccc---CC
Q psy3048          37 DQSNSSV-EKSAIIGDVPVRQLRS----------DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTT-GTCAF---DN  101 (367)
Q Consensus        37 ~~~H~s~-~~~~~~~g~~v~~v~~----------~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t-~~G~i---~d  101 (367)
                      ...|+-. ...+.+.|+.++.++.          +.+|.+|+++|+++|++.... ..+ .+..+..+| .-|++   +.
T Consensus       128 hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~-~i~-~v~~tlt~N~~GGqpvslen  205 (467)
T TIGR02617       128 SNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN-NVP-YIVATITCNSAGGQPVSLAN  205 (467)
T ss_pred             eEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC-Cce-eeeeeEEEecCCCEEeCHHH
Confidence            3455553 3456678988877642          236999999999999864211 111 222222223 34555   56


Q ss_pred             hhhHHHHHhhcCcEEEEecccccc-cccC--------h-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecc---
Q psy3048         102 LEELGPICQEYNIWLHVDAAYAGS-ALLL--------P-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNA---  167 (367)
Q Consensus       102 l~~I~~l~~~~gi~l~vD~a~~~~-~~~~--------~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~---  167 (367)
                      +++|.++|++||+++|+|||--+- ..+.        + ..+..... .+.+|++++|+.|-+++|.|. ++..+++   
T Consensus       206 lr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg-~Lag~d~~~~  284 (467)
T TIGR02617       206 LKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGG-LLCFKDDSFF  284 (467)
T ss_pred             HHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccc-eEEecchhHH
Confidence            788888999999999999975331 1110        0 01111100 256799999999999999663 4555555   


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG  247 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (367)
                      +.+.+....-..|  .+       -+-|                               ..-.++...++  ...|... 
T Consensus       285 ~l~~~~~~~~i~~--EG-------f~tY-------------------------------GGlagrd~ea~--a~Gl~e~-  321 (467)
T TIGR02617       285 DVYTECRTLCVVQ--EG-------FPTY-------------------------------GGLEGGAMERL--AVGLYDG-  321 (467)
T ss_pred             HHHHHHHhhcccc--cC-------CcCc-------------------------------CchhHHHHHHH--Hhhhhhc-
Confidence            3343321111110  00       0011                               00001111111  1222221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEE----cC--CchH-HHHHHHHHhcc-CcEEEEEeEE--
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRL----KG--DNDL-TNQLYERLMSH-KQIYIIKASF--  317 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~----~~--~~~~-~~~l~~~L~~~-g~~~~~~~~~--  317 (367)
                        --++..++.....+||.++|.+. |+.+.. ..-+-+.+..    +.  ..+. ...+.-.|..+ |+--+.-+..  
T Consensus       322 --~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~  397 (467)
T TIGR02617       322 --MNLDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLL  397 (467)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceec
Confidence              12445566778888999999885 887766 5444444421    11  0121 23555555443 3222211111  


Q ss_pred             -----------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         318 -----------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       318 -----------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                                 ..-..+|+++...--|.+++|.+++++..+.++-
T Consensus       398 ~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~  442 (467)
T TIGR02617       398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_pred             ccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhh
Confidence                       1135899987555556899999999999987753

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.10  E-value=5.3e-08  Score=95.22  Aligned_cols=220  Identities=9%  Similarity=0.007  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |++.|++.+++..   .....|++.-.....|.+.|    +++|.++|++||+++++|+.+.++ .....+.....++ .
T Consensus       186 d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv-~  260 (428)
T PRK12389        186 DIEALKEALDKWG---DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGV-E  260 (428)
T ss_pred             CHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCC-C
Confidence            7899999886432   22456666656666788888    999999999999999999999876 2211111111234 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++..-+|.++.++ +.. ..+.. .+.+...                                     
T Consensus       261 PDivt~--gK~lggG~Pi~av~~~~-~i~-~~~~~~~~~~~~~-------------------------------------  299 (428)
T PRK12389        261 PDLTAL--GKIIGGGLPIGAYGGRK-DIM-EQVAPLGPAYQAG-------------------------------------  299 (428)
T ss_pred             CCeeee--chhhcCCCceeEEeEHH-HHH-hhhccCCCccccc-------------------------------------
Confidence            587654  68877655577776643 222 21110 0000000                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCC-eEEeCCCCceeEEEEEcCC--
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDR-FELVCPPSMGLVCFRLKGD--  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g-~~~~~~~~~~~v~f~~~~~--  293 (367)
                            + -.++...+.+..+.|+.+..+   ++.++..++.++|++.|++    ++- .++....  +++.+.+...  
T Consensus       300 ------T-~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~--g~~gi~~~~~~~  367 (428)
T PRK12389        300 ------T-MAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINRLK--GALTVYFTDEKV  367 (428)
T ss_pred             ------C-CccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC--cEEEEEEeCCCC
Confidence                  0 011112233444555555433   3556777888888888765    321 1221111  2222222110  


Q ss_pred             ----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         294 ----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       294 ----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                                ......+.+.+.++|. ++.+.   +...+.+   ....+++||+++++++++++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~---~~~~~~~---~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        368 TNYDQAERSDGEAFGKFFKLMLNQGI-NLAPS---KYEAWFL---TTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             CChhhhcccCHHHHHHHHHHHHHCCc-EeecC---CCCCeee---cCCCCHHHHHHHHHHHHHHHHh
Confidence                      1224577888888985 44332   1112323   3455899999999999998764

>PRK06062 hypothetical protein; Provisional

Probab=99.09  E-value=2.5e-07  Score=90.95  Aligned_cols=224  Identities=11%  Similarity=0.028  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      +++|++.++...  ...+.+|++.-....-|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..
T Consensus       200 ~~~le~~l~~~~--~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~P  276 (451)
T PRK06062        200 LAHLERVIELEG--PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VP  276 (451)
T ss_pred             HHHHHHHHHhcC--CCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CC
Confidence            577788775321  122456666655566688888    99999999999999999999987533322212222344 46


Q ss_pred             ceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |++++  -|.+++.+ -+|.++.++ +.. ..+.. ..+. ..                                     
T Consensus       277 Di~t~--gK~lggG~~Pigav~~~~-~i~-~~~~~-~~~~-~~-------------------------------------  313 (451)
T PRK06062        277 DLITF--AKGVNSGYVPLGGVAISE-AIA-ATFAD-RPYP-GG-------------------------------------  313 (451)
T ss_pred             Ceeee--chhhhcCCcCcEEEEEcH-HHH-HHhcc-CCCC-CC-------------------------------------
Confidence            87665  68887653 467777754 222 22210 0010 00                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhcCC----CCe-EEeCCCCceeEEEEEcCC--
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA-KKFADLVEKD----DRF-ELVCPPSMGLVCFRLKGD--  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la-~~l~~~L~~~----~g~-~~~~~~~~~~v~f~~~~~--  293 (367)
                          .+. .+....+....+.|+.+..+.   ..++..++. +++.+.|+++    +-+ ++-...  .++.+.+..+  
T Consensus       314 ----~T~-~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~G--l~~gve~~~~~~  383 (451)
T PRK06062        314 ----LTY-SGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGEVRGLG--VFWALELVADRE  383 (451)
T ss_pred             ----CCC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccc--cEEEEEEccccc
Confidence                000 011122334445555554443   444555555 4555555443    211 111111  1222222110  


Q ss_pred             -----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 -----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 -----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                                 ......+.+.+.++|.+ +.+   . ...+|+++ ....+++|||.+++++++.++++.
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~l~~~Gvl-~~~---~-~~~lrl~p-pl~~t~~eid~~~~~l~~~l~~~~  447 (451)
T PRK06062        384 TREPLAPYGASSAAMAAVKAACKERGLL-PFV---N-GNRIHVVP-PCTVTEDEVREGLAILDAALAVAD  447 (451)
T ss_pred             ccCCCcccchhhHHHHHHHHHHHHCCcE-Eee---c-CCEEEEEC-CccCCHHHHHHHHHHHHHHHHHhh
Confidence                       01345788888999954 322   1 24799954 456789999999999999988764

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.09  E-value=8.2e-08  Score=94.65  Aligned_cols=229  Identities=11%  Similarity=0.070  Sum_probs=127.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +.+.+++.+++..........|++.-....-|.+.|    ++++.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       214 ~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~  292 (464)
T PRK06938        214 NLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-I  292 (464)
T ss_pred             HHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-C
Confidence            367788888643211112345555544444455533    78999999999999999999877644332222222344 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  -|.+++..-+|.++.++.  + ..+.  +.+..+                                      
T Consensus       293 PDiv~~--gKglggG~PlsAv~~~~~--~-~~~~--~~~~~~--------------------------------------  327 (464)
T PRK06938        293 PDVVVL--SKAIGGSLPLAVVVYREW--L-DTWQ--PGAHAG--------------------------------------  327 (464)
T ss_pred             CCEEEe--eccccCCCceEEEeehhH--h-hccC--CCCCCC--------------------------------------
Confidence            688888  577776666788777533  2 1111  110000                                      


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCce-eEEEEEcCC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSMG-LVCFRLKGD-----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~~-~v~f~~~~~-----  293 (367)
                           +. .+....+.+..+.|+.+..+   +..++..++.++|.++|+++. ...++.. ...+ ++.+.+...     
T Consensus       328 -----T~-~gnpla~Aaa~a~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~  398 (464)
T PRK06938        328 -----TF-RGNQMAMAAGSATLRYIKEH---RLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPD  398 (464)
T ss_pred             -----CC-CcCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCccccc
Confidence                 00 11112223344445554443   345567777778777776541 1222211 1222 223333210     


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                              ......+.+.+.++|.+ +.+.... ...+|+.+ ....|++|+|.+++++++.+.++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~Gll-~~~~g~~-~~~l~~~P-pl~it~~eid~~~~~l~~~l~~~~  462 (464)
T PRK06938        399 ALGHPPANGELASLIQRECLRRGLI-LELGGRH-GSVVRFLP-PLIITAEQIDEVAEIFAEAVAAAV  462 (464)
T ss_pred             ccccCCccHHHHHHHHHHHHHCCeE-EeecCCC-CCEEEEEC-CCccCHHHHHHHHHHHHHHHHHHh
Confidence                    12345677788888853 4332111 35899954 466789999999999999988754

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.08  E-value=2.5e-07  Score=90.40  Aligned_cols=224  Identities=14%  Similarity=0.061  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++.+++.+.... .......|++.-.....|.+-|    +++|.++|++||+++++|+.+.++......+.....++ ..
T Consensus       182 ~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~p  259 (420)
T TIGR00700       182 LAAARAIFVIDV-GANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EP  259 (420)
T ss_pred             HHHHHHHHHhhc-CCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CC
Confidence            456666664221 1223455666655556677655    89999999999999999999987644322111111222 35


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |+++  ..|.+++...+|+++.+.. .. +.+.  ....  .                                      
T Consensus       260 Di~~--lsK~l~~G~pig~v~~~~~-i~-~~~~--~~~~--~--------------------------------------  293 (420)
T TIGR00700       260 DLIT--TAKSLADGLPLSGVTGRAE-IM-DAPA--PGGL--G--------------------------------------  293 (420)
T ss_pred             CEEE--eeccccCCcceEEEEecHH-HH-hhcC--CCCc--C--------------------------------------
Confidence            7655  6888887677888887432 22 1111  0000  0                                      


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcC------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKG------  292 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~------  292 (367)
                          .+-.+..+.+....++++.+..+.+.   ++..++.++++++|++    +|.+..+... -.+..+.+..      
T Consensus       294 ----~T~~~~pl~~aaa~a~l~~l~~~~~~---~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~~~~  365 (420)
T TIGR00700       294 ----GTYAGNPLACAAALAVLAIIESEGLI---ERARQIGRLVTDRLTTLKAVDPRIGDVRGL-GAMIAVELVDPGTTEP  365 (420)
T ss_pred             ----CCCCcCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhhCCCEEEeecc-ceEEEEEEecCCCCCc
Confidence                00011112223333445544444433   3444555555555543    4333322222 2333444321      


Q ss_pred             CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         293 DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       293 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      .......+.+.+.++|.. +.+....+ .++|+++ ....++++++++++.|.+++.
T Consensus       366 ~~~~~~~l~~~~~~~Gv~-i~p~~~f~-~~lRl~p-~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       366 DAGLAERIATAAHAAGLL-LLTCGMFG-NIIRFLP-PLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             cHHHHHHHHHHHHHCCeE-EeccCCCC-CEEEEEC-CCCcCHHHHHHHHHHHHHHhh
Confidence            122345677777888854 44332222 5899965 233579999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.06  E-value=9.7e-08  Score=93.26  Aligned_cols=226  Identities=11%  Similarity=0.077  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecC-CCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      +++.|++.++...   .....|++.-. ....|.+    +=+++|.++|++||+++++|++|.++.....-+.....++ 
T Consensus       192 ~l~~l~~~i~~~~---~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-  267 (429)
T PRK06173        192 AIEPLQDLLEQKG---DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV-  267 (429)
T ss_pred             HHHHHHHHHHhCC---CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC-
Confidence            4566777775321   22344444432 3434544    3478999999999999999999965322221111112234 


Q ss_pred             CcceeeeccccccccCC-cceeEEEecchhhhhhccCC--ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTD--RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      ..|+++  .-|.+++.. -++.++.+++ ... .+...  ..+....                                 
T Consensus       268 ~PDiv~--~gK~l~gG~~p~~a~~~~~~-i~~-~~~~~~~~~~~~~~---------------------------------  310 (429)
T PRK06173        268 VPDIMC--IGKALTGGYLTLSATITTEA-IAQ-TICSGEAKCFMHGP---------------------------------  310 (429)
T ss_pred             CCCEEE--eehhhhCCccccceEEecHH-HHH-HHhcCCCCccccCC---------------------------------
Confidence            358777  478876542 3556665432 111 11100  0011000                                 


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCCch
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGDND  295 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~~~  295 (367)
                               +. .+....+.+..++|+.+..+   +..++..++.++|++.|+++.++..+..  -...++.+.+.. ..
T Consensus       311 ---------T~-~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~-~~  376 (429)
T PRK06173        311 ---------TF-MANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKE-PV  376 (429)
T ss_pred             ---------CC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCC-cc
Confidence                     00 11122334455556655443   3456778888899888875433332221  123344555543 22


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ....+.+.|.++|. ++.+.   + ..+|+.+ ....+++|+|.+++.|++++.++.
T Consensus       377 ~~~~i~~~l~e~Gi-~v~~~---g-~~l~~~P-pl~it~~ei~~~~~~l~~~l~~~~  427 (429)
T PRK06173        377 NMATLQPRFVEHGI-WVRPF---G-KLVYIMP-PFIISPDELSQLTSGLLRVLKQEY  427 (429)
T ss_pred             cHHHHHHHHHHCCe-EEEec---C-CEEEEeC-CccCCHHHHHHHHHHHHHHHHHHh
Confidence            34678889999984 44332   3 4899965 567789999999999999987654

>PRK06105 aminotransferase; Provisional

Probab=99.06  E-value=1.2e-07  Score=93.39  Aligned_cols=232  Identities=13%  Similarity=0.087  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      .+++++.+....  ...+..|++.-....-|.+.|    ++++.++|++||+++++|+.+.++.....-+.....++ ..
T Consensus       204 ~~~le~~~~~~~--~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~P  280 (460)
T PRK06105        204 ANELEALILAEG--PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KP  280 (460)
T ss_pred             HHHHHHHHHHcC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CC
Confidence            456777765321  122445666555556677777    99999999999999999999966543322212222344 36


Q ss_pred             ceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |++++  -|.+++.. ..|.++.+++ .. ..+.........           +                          
T Consensus       281 Di~~~--gK~lggG~~P~~av~~~~~-i~-~~~~~~~~~~~~-----------~--------------------------  319 (460)
T PRK06105        281 DILVM--SKQLSSSYQPLSAVLMNEK-VY-DPIADESGKIGT-----------F--------------------------  319 (460)
T ss_pred             Ceeee--ecccccCcccceEEEEcHH-HH-HHHhcccccCcc-----------c--------------------------
Confidence            87755  57776542 3666666432 22 211110000000           0                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCcee-EEEEEcCC------
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGL-VCFRLKGD------  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~-v~f~~~~~------  293 (367)
                        ....+-.++...+....+.|+.+..+   +..++..++.++|.++|+++....++.. ...+. ..+.+...      
T Consensus       320 --~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~  394 (460)
T PRK06105        320 --GHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTP  394 (460)
T ss_pred             --ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCC
Confidence              00000011112223344455555443   4566788888888888876532222211 12222 23333211      


Q ss_pred             ----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 ----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 ----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                          ......+...+.++|.+ +.+   .+ ..+|+++ ....+++|||.+++.|++.++++..
T Consensus       395 ~~~~~~~a~~i~~~~~~~Gvl-~~~---~g-~~i~l~P-pl~it~~eid~~~~~l~~~l~~~~~  452 (460)
T PRK06105        395 FEPPGKVGARANAAAHEHGVI-SRA---MG-DTLAFCP-PLIITAAQVDEMVDRFGRALDDVAA  452 (460)
T ss_pred             CCchhHHHHHHHHHHHHCCeE-EEe---cC-CEEEEEC-CCccCHHHHHHHHHHHHHHHHHHHH
Confidence                11235678888888854 432   13 4899965 4557899999999999999987654

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.06  E-value=5.5e-08  Score=95.03  Aligned_cols=224  Identities=10%  Similarity=0.059  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccc-c----cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-A----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-~----i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      |++++++.+....   ....+|++.-.....| .    ..++++|.++|++||+++++|++|.++.....-+.....++ 
T Consensus       193 ~~~~l~~~l~~~~---~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-  268 (427)
T TIGR00508       193 AITPLAKLMELHS---DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV-  268 (427)
T ss_pred             HHHHHHHHHHhcC---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC-
Confidence            4667777776432   1223444443213333 2    37899999999999999999999955322221111111234 


Q ss_pred             CcceeeeccccccccCC-cceeEEEecchhhhhhccCC--ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTD--RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      ..|++++  -|.+.+.. -++.++.++ +.. ..+...  ..+....         .|                      
T Consensus       269 ~pDi~~~--gK~l~gG~~p~~a~~~~~-~~~-~~~~~~~~~~~~~~~---------T~----------------------  313 (427)
T TIGR00508       269 VPDILCV--GKALTGGYMTLSATVTTD-KVA-QTISSGEAGCFMHGP---------TF----------------------  313 (427)
T ss_pred             CCCEEEe--chhhhcCcccceEEEEcH-HHH-HHHhcCCCCccccCC---------CC----------------------
Confidence            4587764  78886542 345555532 221 111110  0111000         00                      


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-C-CceeEEEEEcCCch
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-P-SMGLVCFRLKGDND  295 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~-~~~~v~f~~~~~~~  295 (367)
                                  .+..+......++++.+..+   +..++..++.++|++.|+++.....+.. . ...++.+.+.. ..
T Consensus       314 ------------~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~-~~  377 (427)
T TIGR00508       314 ------------MGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYK-PV  377 (427)
T ss_pred             ------------CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECC-cc
Confidence                        01112233444555554333   3456788888889888877632111111 1 12344454433 23


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ....+.++|.++|. ++.+.   + ..+|+++ ....+++|||++++++++.+.+
T Consensus       378 ~~~~~~~~l~~~Gv-~~~~~---~-~~l~~~p-pl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       378 NVEELQKKFVEQGV-WIRPF---G-KLIYVMP-PYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             CHHHHHHHHHHCCe-EEEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHhc
Confidence            35678889999994 44332   2 3689865 4557899999999999998753

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1358|consensus

Probab=99.05  E-value=1e-08  Score=94.47  Aligned_cols=264  Identities=12%  Similarity=0.109  Sum_probs=164.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHh----hCCC---ccEEEEEecCCCcccccCChh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL----AKGL---IPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~----~~~~---~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      -+|+..+..+.++.++.+...-.++++.++     |+++|++.+.+.+    |..+   ....+++.....++|.+.|+.
T Consensus       179 DIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~  253 (467)
T KOG1358|consen  179 DIIFVDEAVNFAIQKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLP  253 (467)
T ss_pred             cEEEEehhhhHHHHHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccH
Confidence            467778899999999999988899999876     8899988876544    1111   124677777788899999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccC-hh--hhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhh-hhccCCcc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLL-PE--YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT-NTFFTDRV  179 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~-~~--~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~~~~~  179 (367)
                      +|.++..+|...+++|++++.+.+.- ..  -...-.+++..|.++++..-.+..   .|.+.+.+.-.+. +.+ ....
T Consensus       254 ~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrL-Sg~~  329 (467)
T KOG1358|consen  254 EIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRL-SGSG  329 (467)
T ss_pred             HHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc---cCceeecceeeEeeeec-cccc
Confidence            99999999999999999987665421 00  001111245669888887666543   3333432211000 000 0122


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      |.++..      .+.+                                       .+-+...++..+..  -.++.+..+
T Consensus       330 Y~fSAs------lPp~---------------------------------------la~aa~~ai~i~~~--~p~~~~~L~  362 (467)
T KOG1358|consen  330 YCFSAS------LPPY---------------------------------------LAGAAIKAILIEEW--NPEIVQPLR  362 (467)
T ss_pred             eeeecc------Cchh---------------------------------------hhhhHHHHHHHHhh--Ccchhhhhh
Confidence            222211      1111                                       11122222322211  122455566


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-------hHHHHHHHHHhccCcEEEEEeEE------CCeeEEEEE
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN-------DLTNQLYERLMSHKQIYIIKASF------QGRPFLRFV  326 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-------~~~~~l~~~L~~~g~~~~~~~~~------~~~~~lRi~  326 (367)
                      +.+..+-+.|+...++.+...+.++++..++.+..       ..-+++.++-+.++.........      .-+..+||+
T Consensus       363 ~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~  442 (467)
T KOG1358|consen  363 AKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRIC  442 (467)
T ss_pred             ccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEE
Confidence            77777778888888899988889999988886631       12346666666665332221111      125589996


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      + +...+++|++++.+.|++....+
T Consensus       443 ~-~a~~seeel~ra~~~ik~~~~~~  466 (467)
T KOG1358|consen  443 V-SAGMSEEELERAAELIKEVASAV  466 (467)
T ss_pred             E-eCCCCHHHHHHHHHHHHHHHHhh
Confidence            6 56667999999999999986643

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.05  E-value=1.8e-07  Score=92.02  Aligned_cols=211  Identities=12%  Similarity=0.027  Sum_probs=121.4

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ...|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..|++++  -|.+.+..+.
T Consensus       223 iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~~--gK~l~gG~pi  299 (457)
T PRK05639        223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV-KPDLIIF--GKGVASGMGL  299 (457)
T ss_pred             eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCC-CCCEEEe--chhhcCCCcc
Confidence            445555544444465533    78999999999999999999986433222112222344 4698884  7888876777


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |+++.+++ ... ..  ...+..                                            +. .+....+.+.
T Consensus       300 ~av~~~~~-i~~-~~--~~~~~~--------------------------------------------T~-~g~p~~~aaa  330 (457)
T PRK05639        300 SGVIGRKE-LMD-LT--SGSALL--------------------------------------------TP-AANPVISAAA  330 (457)
T ss_pred             eeEEehHH-HHh-hc--CCCccc--------------------------------------------CC-CcCHHHHHHH
Confidence            88777543 221 11  000100                                            00 0111122334


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEeCC-CCc-eeEEEEEcC-----CchHHHHHHHHHhccCcEE
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCP-PSM-GLVCFRLKG-----DNDLTNQLYERLMSHKQIY  311 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~g~~~~~~-~~~-~~v~f~~~~-----~~~~~~~l~~~L~~~g~~~  311 (367)
                      .+.|+.+..+   +..++..++.++|++.|+++ .+..++.. ... .++.+.+..     .......+.+.+.++|.+ 
T Consensus       331 ~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~-  406 (457)
T PRK05639        331 EATLEIIEEE---NLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLI-  406 (457)
T ss_pred             HHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeE-
Confidence            4455555443   44566777888888888763 12222221 111 122232211     123345788888889854 


Q ss_pred             EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         312 IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       312 ~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +.+. ..+...+|+++ ....|++|+|.++++|++.++++.
T Consensus       407 ~~~~-g~~~~~lr~~P-pl~it~~~id~~~~~l~~~l~~~~  445 (457)
T PRK05639        407 LPSY-GMFGNVIRITP-PLVITKEIAEKGLEIMERAIKDAL  445 (457)
T ss_pred             Eeec-CCCCCEEEEeC-CCccCHHHHHHHHHHHHHHHHHHH
Confidence            4332 11246899965 567789999999999999998764

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.05  E-value=1.3e-07  Score=93.28  Aligned_cols=227  Identities=13%  Similarity=0.087  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcce
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS  144 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~  144 (367)
                      +.|++.++..   + ...+|++.-....-+.+.|   +++|.++|++||+++++|+.+.++.....-+.....++ ..|+
T Consensus       218 ~~l~~~i~~~---~-~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDi  292 (459)
T PRK06082        218 DYLEYVIEKE---G-GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDI  292 (459)
T ss_pred             HHHHHHHhcC---C-CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCE
Confidence            4567666531   1 2344555444333223445   89999999999999999999987543322212122344 4688


Q ss_pred             eeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcc
Q psy3048         145 FAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI  223 (367)
Q Consensus       145 ~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (367)
                      ++  .-|.+++.+ -+|.++.++.  +...+.  ..+. .                                        
T Consensus       293 v~--~gKgl~gG~~P~~av~~~~~--i~~~~~--~~~~-~----------------------------------------  325 (459)
T PRK06082        293 LC--IGKGLGGGLVPIAAMITKDK--YNTAAQ--ISLG-H----------------------------------------  325 (459)
T ss_pred             EE--ecccccCCCCcceEEEEcHH--HHhhcc--CCCC-C----------------------------------------
Confidence            87  478887653 4677777543  211110  0000 0                                        


Q ss_pred             ccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC-------
Q psy3048         224 QHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD-------  293 (367)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~-------  293 (367)
                        ++. .+....+.+..+.|+.+..+   +..++..++.++|.++|+++. ...++.. ... .++.+.+..+       
T Consensus       326 --~T~-~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~  399 (459)
T PRK06082        326 --YTH-EKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERA  399 (459)
T ss_pred             --CCC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCcc
Confidence              000 11112223344455555433   356677888888888886642 1222211 111 2233333211       


Q ss_pred             chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy3048         294 NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGS  357 (367)
Q Consensus       294 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~  357 (367)
                      ......+...+.++|.+ +.+   .+...+|+++ ....+++|||++++++++.+.++.++-.+
T Consensus       400 ~~~~~~~~~~~~~~Gvl-~~~---~~~~~i~~~P-pl~it~~eid~~~~~l~~~l~~~~~~~~~  458 (459)
T PRK06082        400 YDEAEAVLYRCLNNGLS-FKV---SQGNVIQLSP-PLIITREELTQALAILEEAIAKICQDFNY  458 (459)
T ss_pred             HHHHHHHHHHHHhCCCE-EEe---cCCCEEEEeC-CCccCHHHHHHHHHHHHHHHHHHhhhccC
Confidence            12245677778888854 332   2336899964 45578999999999999999887655443

>KOG0630|consensus

Probab=99.03  E-value=3.3e-09  Score=100.09  Aligned_cols=201  Identities=21%  Similarity=0.287  Sum_probs=146.8

Q ss_pred             CceEEEecCCcchhH-HHHHHhCCcceEEEec--C-----CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC
Q psy3048          29 SRLVAYASDQSNSSV-EKSAIIGDVPVRQLRS--D-----DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD  100 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~-~~~~~~~g~~v~~v~~--~-----~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~  100 (367)
                      ..+++|+|+..|.-. +.+|+.+|+..+.|.+  +     ..|+||...+++.++++...|+.|.+++...+.+..|..+
T Consensus       230 aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD  309 (838)
T KOG0630|consen  230 AAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND  309 (838)
T ss_pred             cCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence            468999999999884 5678888875544433  2     2469999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHhhcC-cEEEEecccccccccChhhhhhhCC-CCCcceeeeccccccccCCcceeEEEecchhhhhhccCCc
Q psy3048         101 NLEELGPICQEYN-IWLHVDAAYAGSALLLPEYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       101 dl~~I~~l~~~~g-i~l~vD~a~~~~~~~~~~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      -|-+|.++|++++ .|+|.-|- +...+.+.+-...+.+ .+..|+|+.+.--|++.|.- -++....+  ++       
T Consensus       310 mi~kildi~eahakfWLHasGh-aiAALt~aepnnil~HV~eqldSMal~ialWLGiPSa-PiV~LHRP--le-------  378 (838)
T KOG0630|consen  310 MILKILDICEAHAKFWLHASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSA-PIVLLHRP--LE-------  378 (838)
T ss_pred             HHHHHHHHHHHhhheeEeeccc-hhhheeecCcccchhHHHHHHhhccchhHHHhCCCCC-ceEEeecc--cc-------
Confidence            9999999999987 99999872 2222322211111111 24469999999999998833 23333221  11       


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      +|-.+.                                       ..-.....++.+++++|.+++.++.+.+.++.+..
T Consensus       379 g~aaSa---------------------------------------fesdpi~rekLdaLp~Wta~q~LggKaIadmienA  419 (838)
T KOG0630|consen  379 GSAASA---------------------------------------FESDPILREKLDALPLWTALQALGGKAIADMIENA  419 (838)
T ss_pred             cccchh---------------------------------------cccChHHHHhhccchHHHHHHHhcccHHHHHHHHH
Confidence            000000                                       00011224456779999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEeC
Q psy3048         259 ISLAKKFADLVEKDDRFELVC  279 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~  279 (367)
                      ..+++.+.+.+.++++++++.
T Consensus       420 Fll~kilfe~aSa~~eiemig  440 (838)
T KOG0630|consen  420 FLLCKILFEGASACEEIEMIG  440 (838)
T ss_pred             HHHHHHHHHHhhcCCceeEec
Confidence            999999999999999999885

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.03  E-value=7.3e-08  Score=94.51  Aligned_cols=230  Identities=16%  Similarity=0.171  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      .++|+++++...  .....+|++.-.....|.+.|    +++|.++|++||+++++|++|.++.....-+.....++ ..
T Consensus       201 ~~~le~~l~~~~--~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~P  277 (442)
T PRK13360        201 ADELERLVTLHD--ASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TP  277 (442)
T ss_pred             HHHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CC
Confidence            457777775321  123456666666667788888    99999999999999999999965433221111112234 35


Q ss_pred             ceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |++++  -|.+.+. .-+|.++.+++ .. +.+...+..           ...+                    .     
T Consensus       278 Divt~--gK~l~gG~~P~gav~~~~~-i~-~~~~~~~~~-----------~~~~--------------------~-----  317 (442)
T PRK13360        278 DLLTC--AKGLTNGAIPMGAVFVSSE-IH-DAFMQGPEA-----------GIEF--------------------F-----  317 (442)
T ss_pred             ceeee--eeccccCccceEEEEEcHH-HH-HHhhcCCcc-----------cccc--------------------c-----
Confidence            87655  6887653 23666666432 22 211110000           0000                    0     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCcee-EEEEEcC----Cch
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGL-VCFRLKG----DND  295 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~-v~f~~~~----~~~  295 (367)
                        ..++.. +.........+.|+.+..++   ..++..++.+++.+.|+++..+..+.+ ...+. ..+.+..    ...
T Consensus       318 --~~~T~~-g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~  391 (442)
T PRK13360        318 --HGYTYS-GHPLACAAALATLDLYEREG---LLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGK  391 (442)
T ss_pred             --cCCCCC-CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcch
Confidence              000111 11122344455566554443   456777888888888876532222211 11121 1222211    122


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...++.+++.++|.+ +.+   .+ ..+|+++ ....|++|||+++++|++.++++
T Consensus       392 ~~~~~~~~l~~~Gvl-~~~---~~-~~lr~~P-pl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        392 RAYEVFLKCFEKGLM-IRY---TG-DILALSP-PLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             hHHHHHHHHHHCCcE-EEe---cC-CEEEEeC-CCccCHHHHHHHHHHHHHHHHHh
Confidence            345788888889853 432   22 4799965 56778999999999999998764

>PRK12403 putative aminotransferase; Provisional

Probab=99.03  E-value=4.1e-07  Score=89.73  Aligned_cols=228  Identities=13%  Similarity=0.067  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      ++|++.+.+..+  .....|++.-....-|.+.|    +++|.++|++||+++++|++++++.....-+.....++ ..|
T Consensus       209 ~~le~~~~~~~~--~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv-~PD  285 (460)
T PRK12403        209 LQLEEKILELGA--ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF-EPD  285 (460)
T ss_pred             HHHHHHHHHhCC--CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCC-CCC
Confidence            456665543221  22345666655566688877    99999999999999999999976543322212112244 358


Q ss_pred             eeeeccccccccCC-cceeEEEecchhhhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         144 SFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       144 ~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      +++  .-|.+++.+ .+|.++.++ + +.+.+.. ...|+...                                     
T Consensus       286 iv~--~gK~lggG~~Piga~v~~~-~-i~~~~~~~~~~~~~~~-------------------------------------  324 (460)
T PRK12403        286 TLS--IAKGLTSGYVPMGGLVLSK-R-IAEALVEQGGVFAHGL-------------------------------------  324 (460)
T ss_pred             eEE--EcccccccccceEEEEECH-H-HHHHHhcCCCccccCC-------------------------------------
Confidence            886  578887664 567777643 2 2222210 01111000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHhcCC-CCeEEeCC-CCc-eeEEEEEcCC----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI-SLAKKFADLVEKD-DRFELVCP-PSM-GLVCFRLKGD----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~-~la~~l~~~L~~~-~g~~~~~~-~~~-~~v~f~~~~~----  293 (367)
                            +-.+....+.+..+.|+.+..+.   ..++.. ++.+++.+.|+++ ....++.. ... .+..+.+...    
T Consensus       325 ------T~~gnPl~~Aaala~L~~i~~~~---l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~  395 (460)
T PRK12403        325 ------TYSGHPVAAAVAIANLKALRDEG---VVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATR  395 (460)
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCcccc
Confidence                  00111122344445565554443   344554 6666776666532 11112211 111 2223333211    


Q ss_pred             ---c---hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         294 ---N---DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       294 ---~---~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                         .   .....+.+.+.++|.+ +.+   .+ ..+|+++ ..-.|++|+|.+++.|+++++++.++
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~Gll-~~~---~~-~~~~l~P-pl~it~~eid~~~~~l~~al~~~~~~  456 (460)
T PRK12403        396 KRFANENDLAWRCRTIGFEEGVI-IRS---TL-GRMIMAP-ALVAGRAEIDELVDKTRIAVDRTARE  456 (460)
T ss_pred             ccccchhHHHHHHHHHHHhCCEE-EEe---cC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence               0   1123455666788844 322   12 2578854 45678999999999999999887543

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.03  E-value=2.6e-07  Score=90.17  Aligned_cols=225  Identities=13%  Similarity=0.078  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CC---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++.+++.+++.. .......|++.-.....|.. .|   +++|.++|++||+++++|+.|.++......+.....++ .
T Consensus       182 ~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~  259 (421)
T PRK06777        182 ALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV-K  259 (421)
T ss_pred             HHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC-C
Confidence            3566777775321 11223455555555555643 34   89999999999999999999986533222111111122 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++  ..|.+++...+|+++.++ +.. +.+..  ..     .                                   
T Consensus       260 pDiv~--~sK~l~~G~pigav~~~~-~i~-~~~~~--~~-----~-----------------------------------  293 (421)
T PRK06777        260 PDLIT--MAKSLGGGMPISAVVGRA-EVM-DAPAP--GG-----L-----------------------------------  293 (421)
T ss_pred             CCEEe--eehhhcCCCceEEEEEcH-HHH-hccCC--CC-----C-----------------------------------
Confidence            57654  578887656688887753 222 11110  00     0                                   


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCC----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~----  293 (367)
                          ..+-.+......+..++|+.+..   +++.++..++.+++.++|+++    +.+.-+. +.-.++.+.+...    
T Consensus       294 ----~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G~~~~i~~~~~~~~~  365 (421)
T PRK06777        294 ----GGTYAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAIVDIR-ARGSMVAVEFNDPQTGK  365 (421)
T ss_pred             ----CCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEec-CceEEEEEEEecCccCC
Confidence                00001111223344444544333   456667778888888888764    3222221 2222223333211    


Q ss_pred             --chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         294 --NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       294 --~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                        ......+.+.+.++|. .+.++...+ .++|+++ ....++++++++++.|++.+.
T Consensus       366 ~~~~~~~~l~~~~~~~Gv-~i~~~~~~g-~~lr~~p-pl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        366 PSPEFTRQYQRQALEEGL-LLLSCGVHG-NVIRFLY-PLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             ccHHHHHHHHHHHHhCCe-EEeecCCCC-CEEEEeC-CCCCCHHHHHHHHHHHHHHHh
Confidence              1234566667788884 444432222 5899965 346789999999999988753

>KOG0634|consensus

Probab=99.01  E-value=4.7e-07  Score=84.82  Aligned_cols=270  Identities=12%  Similarity=0.132  Sum_probs=154.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC---CCcc-EEEEEecCCCcccccCCh---
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK---GLIP-CCLVATLGTTGTCAFDNL---  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~---~~~~-~~vv~~~~~t~~G~i~dl---  102 (367)
                      .-.|++...++.+....++..|++++.|+.|++ .+++|.|++.+..-...   ...| ++-.+-.+.|+||..-.+   
T Consensus       148 gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~-Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~err  226 (472)
T KOG0634|consen  148 GDHVLIEEYTYPSALQSMEALGVKIIPVKMDQD-GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERR  226 (472)
T ss_pred             CCceEEecccchHHHHhccccCceEEeccccCC-CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHH
Confidence            456777788888888888888988888888655 46999999999754322   1224 344555678999987555   


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccC---------hhh------hhhhCCCC--Ccc--eeee-ccccccccCCcceeE
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLL---------PEY------AHLKRGLE--YVD--SFAF-NAHKWLLTNHDCSAM  162 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~---------~~~------~~~~~~~~--~~D--~~~~-~~hK~l~~p~g~g~l  162 (367)
                      ++|.+|||+|++.++.|..|....+..         +.+      +.....+-  +.|  ++.. +..|.+..+...|++
T Consensus       227 k~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~i  306 (472)
T KOG0634|consen  227 KKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWI  306 (472)
T ss_pred             HHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEe
Confidence            789999999999999999987665541         000      00011110  111  2222 356777655556665


Q ss_pred             EEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHH
Q psy3048         163 WVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMT  242 (367)
Q Consensus       163 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (367)
                      ...+ ..+++.+       ...                                        +.++.....+...-+++.
T Consensus       307 t~~~-~~l~ril-------~~a----------------------------------------e~~t~~pSg~sq~iv~a~  338 (472)
T KOG0634|consen  307 TGNS-LFLKRIL-------DLA----------------------------------------EVATSGPSGFSQGIVYAM  338 (472)
T ss_pred             ecCH-HHHHHHh-------hhc----------------------------------------ceeecCcccccHHHHHHH
Confidence            5432 1232221       111                                        011111122334455666


Q ss_pred             HHHhhHHHHHHHHHH----HHHHHHHHHHHhcC-CCC--eEEeCCCCce-eEEEEEc-------CC-chHHHHHHHHHhc
Q psy3048         243 LRSYGLKGLQAYLRK----HISLAKKFADLVEK-DDR--FELVCPPSMG-LVCFRLK-------GD-NDLTNQLYERLMS  306 (367)
Q Consensus       243 l~~~~~~g~~~~~~~----~~~la~~l~~~L~~-~~g--~~~~~~~~~~-~v~f~~~-------~~-~~~~~~l~~~L~~  306 (367)
                      |+..|++|+-+.+.+    ..+.+..+.+.|.+ +|.  ++++ +|..+ .++++++       .. ++.-..+..++.+
T Consensus       339 l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~-~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk  417 (472)
T KOG0634|consen  339 LKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYH-PPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVK  417 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEe-cCCcceEEEEEecccccccccchHHHHHHHHHHHHH
Confidence            777777765555444    33444555555544 343  3444 44444 3455554       11 2222345556677


Q ss_pred             cCcEEEEEeEE-------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         307 HKQIYIIKASF-------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       307 ~g~~~~~~~~~-------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +|+..+.+..+       .++.++|++..  +...++++..++.+-..+++.
T Consensus       418 ~gV~~v~G~~F~v~p~~s~~kiffRls~a--~a~~e~l~~g~~rf~~~ike~  467 (472)
T KOG0634|consen  418 NGVKLVCGSWFMVDPESSWSKIFFRLSIA--FAEPEKLDEGIERFGSVIKEH  467 (472)
T ss_pred             CCeEEecCceeEEcCccCCCcceEEEEee--cCCHHHHHHHHHHHHHHHHHH
Confidence            77544433211       13459999774  345778888888887777764

>PRK07481 hypothetical protein; Provisional

Probab=99.00  E-value=3.8e-07  Score=89.73  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=117.5

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-c
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-D  158 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g  158 (367)
                      +.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..|++++  -|.+.+.+ -
T Consensus       214 iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~P  290 (449)
T PRK07481        214 IAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCL--AKGITSGYVP  290 (449)
T ss_pred             EEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEE--eecccCCCcC
Confidence            455666655555566655    89999999999999999999876543322111212344 4688777  57777652 4


Q ss_pred             ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHH
Q psy3048         159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK  238 (367)
Q Consensus       159 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (367)
                      +|.++.+++ .. ..+......  ..         .+                            .+..+-.+....+.+
T Consensus       291 i~av~~~~~-i~-~~~~~~~~~--~~---------~~----------------------------~h~~T~~gnpl~~aa  329 (449)
T PRK07481        291 LGATMVNAR-IA-DAFEANADF--GG---------AI----------------------------MHGYTYSGHPVACAA  329 (449)
T ss_pred             ceEEEEcHH-HH-HHHhccCcc--cc---------cc----------------------------ccCCCCCCCHHHHHH
Confidence            777777543 22 111100000  00         00                            000011112122233


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC----------chHHHHHHHHHh
Q psy3048         239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD----------NDLTNQLYERLM  305 (367)
Q Consensus       239 ~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~----------~~~~~~l~~~L~  305 (367)
                      ..+.|+.+..+   +..++..++.+++.+.|+++. ...++.. ... .++.+.+..+          ......+.+.+.
T Consensus       330 a~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~  406 (449)
T PRK07481        330 ALATLDIVVRE---DLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVAR  406 (449)
T ss_pred             HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence            44445544433   455667777888877776642 1222211 112 2223333211          123456778888


Q ss_pred             ccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         306 SHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       306 ~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ++|.+ +.+.   + ..+|+++ ....|++|||.++++|++.++++
T Consensus       407 ~~Gvl-~~~~---g-~~i~l~P-pl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        407 ENGVL-VRPS---G-TKIILSP-PLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             hCCeE-EEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHhc
Confidence            89853 4322   3 2578854 44568999999999999998765

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.00  E-value=8.2e-08  Score=93.69  Aligned_cols=225  Identities=9%  Similarity=-0.003  Sum_probs=122.3

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecC-CCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      |++++++.++...   ....+|++.-. ....|.+    ..+++|.++|++||+++++|++|.++.....-+.....++ 
T Consensus       190 d~~~l~~~l~~~~---~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv-  265 (428)
T PRK07986        190 DIAPFARLMAAHR---HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI-  265 (428)
T ss_pred             HHHHHHHHHHhCC---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC-
Confidence            5677888886321   12234444432 3333443    3489999999999999999999965422211111111233 


Q ss_pred             CcceeeeccccccccC-CcceeEEEecchhhhhhccCCc-cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDR-VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP  218 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (367)
                      ..|+++  .-|.+.+. .-+|.++.+++  +...+.... ..+...                                  
T Consensus       266 ~PDi~t--~gK~l~gG~~p~~av~~~~~--i~~~~~~~~~~~~~~~----------------------------------  307 (428)
T PRK07986        266 APDILC--LGKALTGGTMTLSATLTTRE--VAETISNGEAGCFMHG----------------------------------  307 (428)
T ss_pred             CCCEEE--echhhhCCcccCcchhchHH--HHHHhhcCCCCccccC----------------------------------
Confidence            358776  46777654 24455555332  211111000 000000                                  


Q ss_pred             CCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CC-ceeEEEEEcCCchH
Q psy3048         219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PS-MGLVCFRLKGDNDL  296 (367)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~-~~~v~f~~~~~~~~  296 (367)
                             .+. .+....+.+..+.|+.+..+   ++.++..++.+++++.|+++.....+.. .. ..++.+.+.. ...
T Consensus       308 -------~T~-~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~-~~~  375 (428)
T PRK07986        308 -------PTF-MGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTR-PVN  375 (428)
T ss_pred             -------CCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCC-ccc
Confidence                   000 01222334445556655443   3466778888888888876522222211 11 2233444433 222


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ...+.+.+.++|.+ +.+.   + ..+|+.+ ....+++||++++++|++.+++
T Consensus       376 ~~~~~~~l~~~Gl~-~~~~---g-~~i~~~P-pl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        376 MAALQRFFVEQGVW-IRPF---G-KLIYLMP-PYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             HHHHHHHHHHCCcE-EEec---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHhh
Confidence            45788889999953 4322   3 4899954 5677899999999999998754

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.00  E-value=4.1e-07  Score=89.75  Aligned_cols=230  Identities=13%  Similarity=0.130  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-CCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++++++.++...   .....|++.- .....|.+.    =+++|.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       201 l~~le~~~~~~~---~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~  276 (466)
T PRK07030        201 FAHMEQTLAEHH---DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-R  276 (466)
T ss_pred             HHHHHHHHHhCC---CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-C
Confidence            456677775321   2234455443 234446553    378999999999999999999876543322222222344 4


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+.+.+ -.|.++.+++ .. ..+.....-  ..         .+                         
T Consensus       277 PDiv~~--gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~~~--~~---------~~-------------------------  316 (466)
T PRK07030        277 PDFLCL--SKALTGGYLPLAAVLTTDT-VY-QAFYDDYPT--LR---------AF-------------------------  316 (466)
T ss_pred             CCEEee--ehhccCCcccceEEEecHH-HH-HHHhccccc--cc---------cc-------------------------
Confidence            688888  57777663 5777777543 22 111100000  00         00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCce-eEEEEEcCCc----
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMG-LVCFRLKGDN----  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~-~v~f~~~~~~----  294 (367)
                         ....+-.+....+.+..+.|+.+..+   ++.++..++.+++.+.|+++.....+.. ...+ ++.+.+....    
T Consensus       317 ---~h~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~  390 (466)
T PRK07030        317 ---LHSHSYTGNPLACAAALATLDIFEQD---NVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKT  390 (466)
T ss_pred             ---ccCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccc
Confidence               00000011212234444555555443   3556777888888888866522211111 1222 2233332110    


Q ss_pred             ------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         295 ------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       295 ------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                            .....+.+.+.++|.+ +.+   .+ ..+|+.+ ....+++|||.+++.|++.++++.
T Consensus       391 ~~~~~~~~~~~i~~~~~~~Gvl-~~~---~g-~~i~~~P-pl~it~~eid~~~~~l~~al~~~~  448 (466)
T PRK07030        391 PYPWQERRGLKVYQHALERGAL-LRP---LG-SVVYFLP-PYVITPEQIDFLAEVASEGIDIAT  448 (466)
T ss_pred             cCcchhHHHHHHHHHHHHCCeE-EEe---cC-CEEEEEC-CccCCHHHHHHHHHHHHHHHHHHh
Confidence                  1124677888889953 432   23 4799854 566789999999999999999884

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.00  E-value=2.8e-07  Score=89.94  Aligned_cols=225  Identities=10%  Similarity=0.057  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccC-C---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD-N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~-d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++.+++.+++... ...+.+|++.-..++.|..- |   +++|.++|++||+++++|+.++++......+.....++ ..
T Consensus       183 ~~~l~~~~~~~~~-~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~p  260 (421)
T PRK09792        183 LDAIERLFKSDIE-AKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KP  260 (421)
T ss_pred             HHHHHHHHHhccC-CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CC
Confidence            4677777754211 12245666666666777653 6   89999999999999999999987644332111111122 35


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++  +..|.+.+...+|+++.+++ ... .+.  ......                                       
T Consensus       261 Di~--t~gK~l~~G~pigav~~~~~-i~~-~~~--~~~~~~---------------------------------------  295 (421)
T PRK09792        261 DLM--TMAKSLAGGMPLSGVVGNAN-IMD-APA--PGGLGG---------------------------------------  295 (421)
T ss_pred             cEE--EeehhhcCCCceEEEEEcHH-HHh-ccC--CCCcCC---------------------------------------
Confidence            754  44788887677888777432 221 110  000000                                       


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeE-EeCCCC-ceeEEEEEcCCc-----
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFE-LVCPPS-MGLVCFRLKGDN-----  294 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~-~~~~~~-~~~v~f~~~~~~-----  294 (367)
                          +. .+....+.+..+.++.+..+   +..++.+++.+++.+.|+.+. .+. +..... -.++.+.+.+..     
T Consensus       296 ----T~-~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~  367 (421)
T PRK09792        296 ----TY-AGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPS  367 (421)
T ss_pred             ----CC-CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcc
Confidence                00 01111223333455554333   445566677777777665431 111 112223 234445554311     


Q ss_pred             -hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         295 -DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       295 -~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                       .....+...+.++|.+ +.+.. .....+|+.+ ....+++||+++++.|+++++
T Consensus       368 ~~~~~~l~~~~~~~Gv~-i~~~g-~~~~~irl~P-~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        368 AAIAQKIQQRALAQGLL-LLTCG-AYGNVIRFLY-PLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             hHHHHHHHHHHHHCCcE-EeecC-CCCCEEEEeC-CCcCCHHHHHHHHHHHHHHHh
Confidence             2356788888899954 32211 1136899954 344789999999999998864

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.99  E-value=8.7e-08  Score=93.74  Aligned_cols=226  Identities=14%  Similarity=0.119  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      +++|++++++.. ....+.+|++.-.....|.+.+    +++|.++|++||+++++|++|++.............++ ..
T Consensus       184 ~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~-~p  261 (425)
T PRK08088        184 IASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGV-AA  261 (425)
T ss_pred             HHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCC-CC
Confidence            456887775321 1223445655555555566666    99999999999999999999986433221111111222 23


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |  ..+..|.++....+|+++.+. .... .+..       ...     ...+                           
T Consensus       262 d--i~s~sK~l~~G~rig~v~~~~-~~~~-~~~~-------~~~-----~~t~---------------------------  298 (425)
T PRK08088        262 D--LTTFAKSIAGGFPLAGVTGRA-EVMD-AIAP-------GGL-----GGTY---------------------------  298 (425)
T ss_pred             C--EEEEeccccCCCcceeeEecH-HHHh-hcCC-------CCC-----CCCC---------------------------
Confidence            5  355689998666688888743 2222 1110       000     0000                           


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcC------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKG------  292 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~------  292 (367)
                          .   +.......+...|+...   .++..++.+++.+++++.|.+    .|.+.-+..+ -..+.+.+..      
T Consensus       299 ----~---~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~  367 (425)
T PRK08088        299 ----A---GNPIACAAALAVLKVFE---QENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSK  367 (425)
T ss_pred             ----C---cCHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCC
Confidence                0   11111223333333332   234444555555555555543    3333222222 2335555521      


Q ss_pred             -CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         293 -DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       293 -~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                       ......++.+++.++|..+.....  ....+|+++ ....+++||+..++.|++.++++
T Consensus       368 p~~~~~~~l~~~~~~~Gv~~~~~~~--~~~~iRl~~-~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        368 PNAKLTAQIVARARDKGLILLSCGP--YYNVLRILV-PLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             CCHHHHHHHHHHHHhCCCEEecCCC--CCCEEEEEC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence             123356788888999965432111  136899965 45667999999999999988753

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.99  E-value=1.2e-06  Score=85.65  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++++++.++... ....+..|++.-.....|.+.    -+++|.++|++||+++++|+++.++......+.....++ ..
T Consensus       183 ~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv-~p  260 (425)
T PRK07495        183 LAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV-AA  260 (425)
T ss_pred             HHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCC-CC
Confidence            344466554311 112244555554444456443    489999999999999999999976433221111111122 24


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++++  .|.++....+|++..+++ .. ..+.  +.....                                       
T Consensus       261 Di~tl--sK~l~~G~pigav~~~~~-i~-~~~~--~~~~~~---------------------------------------  295 (425)
T PRK07495        261 DLTTM--AKGLAGGFPLAAVTGRAE-IM-DAPG--PGGLGG---------------------------------------  295 (425)
T ss_pred             CEEee--hhhhcCCccceEEEEcHH-HH-hccC--CCCcCC---------------------------------------
Confidence            65444  788876566778777432 22 1111  000000                                       


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCe-EEeCCCCceeEEEEEcCC----
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRF-ELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~-~~~~~~~~~~v~f~~~~~----  293 (367)
                          +. .+....+....++++.+..+.   +.++..++.++++++|+++    |.+ ++-+.  -.++.+.+.+.    
T Consensus       296 ----T~-~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~--Gl~~~iel~~~~~~~  365 (425)
T PRK07495        296 ----TY-GGNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEIADIRGP--GFMNAVEFNDADSGL  365 (425)
T ss_pred             ----CC-CCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC--ceEEEEEEecCCCCC
Confidence                00 111122233345565554433   4456666777777766553    221 11111  12333444321    


Q ss_pred             --chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 --NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 --~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                        ......+.+.+.++|.+ +.+.... ...+|+.+ ....+++|+|.+++.|++.++++.
T Consensus       366 ~~~~~~~~~~~~~~~~Gvl-~~~~g~~-~~~~r~~P-pl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        366 PSAEFANRVRLKALEKGLI-LLTCGVH-GNVIRFLA-PITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             ccHHHHHHHHHHHHHCCeE-EeecCCC-CCEEEEeC-CCccCHHHHHHHHHHHHHHHHHHh
Confidence              12345677888888854 3322111 36899965 567889999999999999987653

>KOG3843|consensus

Probab=98.98  E-value=1.2e-09  Score=95.72  Aligned_cols=276  Identities=16%  Similarity=0.145  Sum_probs=164.3

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEec--C-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCC---cccccCChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRS--D-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTT---GTCAFDNLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t---~~G~i~dl~~I  105 (367)
                      .|+-.+....|..+.+.-.|.+++.|..  + +.-.-|++.+++.+++...     -++...+.+|   ..-..+.+++|
T Consensus       105 yiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~-----dcilci~sttscfapr~pd~leai  179 (432)
T KOG3843|consen  105 YIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGE-----DCILCIHSTTSCFAPRSPDNLEAI  179 (432)
T ss_pred             EEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCC-----ceEEEEeecccccCCCCCchHHHH
Confidence            3444678999999999889998887765  2 3356789999999887653     2333333222   33445889999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +.||..|+++.+|..|||.-.--+-.-.......++.|.++-+..|.|+.|.|.+++..-+..+++.   +...|.++..
T Consensus       180 aaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~---iak~ypgras  256 (432)
T KOG3843|consen  180 AAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQE---IAKMYPGRAS  256 (432)
T ss_pred             HHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHH---HHHhCCCccc
Confidence            9999999999999999986443221111112234678999999999999998877765544444432   2334433322


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .     .+                                          .+-+...|..+|..++.+...+..++.-|+
T Consensus       257 a-----~p------------------------------------------s~dllitll~~gqn~f~e~~~eqkemf~~l  289 (432)
T KOG3843|consen  257 A-----SP------------------------------------------SLDLLITLLSLGQNAFKELFGEQKEMFLKL  289 (432)
T ss_pred             c-----Cc------------------------------------------cHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence            1     11                                          123444556678888888888888888888


Q ss_pred             HHHhcCCC---CeEEeCCCC---ceeEEEEEcCCc-hHH-HHHHHHHhccCcE---EEEE----eEECC-----------
Q psy3048         266 ADLVEKDD---RFELVCPPS---MGLVCFRLKGDN-DLT-NQLYERLMSHKQI---YIIK----ASFQG-----------  319 (367)
Q Consensus       266 ~~~L~~~~---g~~~~~~~~---~~~v~f~~~~~~-~~~-~~l~~~L~~~g~~---~~~~----~~~~~-----------  319 (367)
                      ++++.+..   |-.++..|+   +...++..-+.. ..+ ..+-.-|..+|+-   .++-    +..+|           
T Consensus       290 ~~ki~~~ae~~~e~l~~~p~n~is~amtl~ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~  369 (432)
T KOG3843|consen  290 RNKIIKFAEAIGECLLETPENEISLAMTLKTIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTN  369 (432)
T ss_pred             HHHHHHHHHHhhhhhhcCCCchhhhhhhhccCChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccC
Confidence            87775531   322333221   111122211111 111 1333445555521   1110    11122           


Q ss_pred             ---eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCcccc
Q psy3048         320 ---RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSVAKR  363 (367)
Q Consensus       320 ---~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~~~~~~~  363 (367)
                         ..++-++ +....++.|+|.|+..|...++...++...++....
T Consensus       370 e~~~~yln~a-~aigm~~hdld~~~~rl~~~~a~~~ke~akedd~~~  415 (432)
T KOG3843|consen  370 EQHCAYLNAA-CAIGMKDHDLDEFFNRLDRCLAAFRKELAKEDDDIN  415 (432)
T ss_pred             cCchhHhhHH-HhcCCcHhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence               2234342 245567899999999999888877766665554433

>PRK07483 hypothetical protein; Provisional

Probab=98.98  E-value=5.9e-07  Score=88.19  Aligned_cols=231  Identities=13%  Similarity=0.096  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCC-cccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTT-GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t-~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++|++++....  ......|++.-... .-|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..
T Consensus       186 ~~l~~~~~~~~--~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~P  262 (443)
T PRK07483        186 DELEAKILELG--PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV-AP  262 (443)
T ss_pred             HHHHHHHHhcC--CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC-CC
Confidence            55666564211  11223444443222 2365544    89999999999999999999876644332222212234 46


Q ss_pred             ceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |++++  -|.+.+.+ .+|.++.+++ .. ..+......+...                                     
T Consensus       263 Div~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~h~-------------------------------------  301 (443)
T PRK07483        263 DLVTI--AKGLGAGYQPIGAVLASDR-IY-DAIADGSGFFQHG-------------------------------------  301 (443)
T ss_pred             Ceeee--hhhhccCccccEEEEEcHH-HH-HHHhcCCCccccC-------------------------------------
Confidence            88877  57777664 5777777543 12 1111111011000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEeCC-CCce-eEEEEEcCC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCP-PSMG-LVCFRLKGD-----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~g~~~~~~-~~~~-~v~f~~~~~-----  293 (367)
                           .+-.+.........+.|+.+..+   ++.++..++.++|.++|+++ ....++.. ...+ ++.+.+...     
T Consensus       302 -----~T~~gnpl~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~  373 (443)
T PRK07483        302 -----HTYLGHATACAAALAVQRVIAED---GLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKA  373 (443)
T ss_pred             -----CCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccC
Confidence                 00011112223334445444443   35566777778887777542 12221111 1222 222333110     


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEE--C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASF--Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~--~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                           ......+.+.+.++|.+ +.+...  .  ....+|+.+ ....+++|||.++++|++.+.++.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~Gll-~~~~~~~~~~~~~~~l~~~P-pL~it~~eid~~~~~l~~~l~~~~  439 (443)
T PRK07483        374 PFDPALKLHARIKREAMARGLM-VYPMGGTIDGVRGDHVLLAP-PFIITAAQIDEIVERLGDAIDAAL  439 (443)
T ss_pred             CCCchhhHHHHHHHHHHHCCcE-EEecCccccCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 12345788888999954 332211  0  125899955 567789999999999999988754

>PRK07036 hypothetical protein; Provisional

Probab=98.98  E-value=6.3e-07  Score=88.48  Aligned_cols=226  Identities=10%  Similarity=0.047  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhh-hCCCCCc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYV  142 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~-~~~~~~~  142 (367)
                      +.+++.+...  ....+.+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++......+-.. ..++ ..
T Consensus       207 ~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~P  283 (466)
T PRK07036        207 DEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QP  283 (466)
T ss_pred             HHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CC
Confidence            3455555421  1223456666655566677777    9999999999999999999997653322111111 1233 35


Q ss_pred             ceeeeccccccccCC-cceeEEEecchhhhhhccCC--cc--ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         143 DSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTD--RV--YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       143 D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~--~~--yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      |++++  -|.+.+.+ .+|.++.+++ .. ..+...  +.  |....                                 
T Consensus       284 Divt~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~~~~~---------------------------------  326 (466)
T PRK07036        284 DIITF--AKGLTSGYQPLGAVIISER-LL-DVISGPNAKGNVFTHGF---------------------------------  326 (466)
T ss_pred             CEEEE--ccccccCccccEEEEEcHH-HH-HHHhcccCcCcccccCC---------------------------------
Confidence            87766  68777653 4777777543 22 211100  00  11000                                 


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCc-eeEEEEEcCC--
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSM-GLVCFRLKGD--  293 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~-~~v~f~~~~~--  293 (367)
                               +. .+....+.+..+.|+.+..+   ++.++..++.++|.+.|+++....++.. ... .++.+.+..+  
T Consensus       327 ---------T~-~gnpl~~aaa~a~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~  393 (466)
T PRK07036        327 ---------TY-SGHPVACAAALKNIEIMERE---GLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKG  393 (466)
T ss_pred             ---------CC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCcc
Confidence                     00 11112223334445544333   4566778888888888865422221111 112 2223333211  


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                              ......+.+.+.++|.+ +.+   .+ ..+|+++ ....|++|||.++++|++.++++.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~Gvl-~~~---~~-~~~~l~P-pl~it~~~id~~~~~l~~al~~~~  454 (466)
T PRK07036        394 SKALLPEDIAIGQRIDRHCQERGLL-VRP---LE-HLCVLSP-PLIITRAQIDEIVAILRAAIEETA  454 (466)
T ss_pred             ccCCCCchhHHHHHHHHHHHHCCcE-Eee---cC-CEEEEeC-CCcCCHHHHHHHHHHHHHHHHHHH
Confidence                    11235677788889954 332   12 4678854 455689999999999998887763

>PRK06149 hypothetical protein; Provisional

Probab=98.95  E-value=2.9e-07  Score=98.63  Aligned_cols=227  Identities=11%  Similarity=0.068  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhh-hhhhCCCCCc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYV  142 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~-~~~~~~~~~~  142 (367)
                      +++++.++.....+..+.+|++.-.....|.+.|    +++|.++|++||+++++|+.|.++......+ .....|+ ..
T Consensus       729 ~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~P  807 (972)
T PRK06149        729 RDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VP  807 (972)
T ss_pred             HHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CC
Confidence            5666666543333334556666655566788888    9999999999999999999996543322111 1111244 46


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++++  -|.+++...+|+++.+++  +...+... .++++.                                      
T Consensus       808 Divt~--gK~lg~G~Pl~av~~~~~--i~~~~~~~-~~~~sT--------------------------------------  844 (972)
T PRK06149        808 DIITM--AKGMGNGHPLGAVITRRE--IAEALEAE-GYFFSS--------------------------------------  844 (972)
T ss_pred             CEEEe--cccccCCeeeEEEEEcHH--HHhhhccC-CcccCC--------------------------------------
Confidence            88755  688776656788877543  22222110 111110                                      


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEeCC-CCce-eEEEEEcC-------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDR-FELVCP-PSMG-LVCFRLKG-------  292 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g-~~~~~~-~~~~-~v~f~~~~-------  292 (367)
                            ..+....+....+.|+.+..+   ++.++..++.++|+++|+++.. ..++.. ...+ ++.+.+..       
T Consensus       845 ------~~gnP~~~aaala~L~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~  915 (972)
T PRK06149        845 ------TGGSPVSCRIGMAVLDVLREE---KLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEP  915 (972)
T ss_pred             ------CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCC
Confidence                  011112233444555555443   4556777778888888866411 112211 1122 22333321       


Q ss_pred             CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         293 DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       293 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .......+.+++.++|.+ +.+... ...++|+.+ ....+++|||.++++|++++.+
T Consensus       916 ~~~~~~~i~~~l~~~Gvl-~~~~g~-~~~vl~~~P-pl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        916 ATEETAAICDRLLELGVI-MQPTGD-HLNILKIKP-PLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             ChHHHHHHHHHHHhCCeE-EeecCC-CCCEEEEEC-CCcCCHHHHHHHHHHHHHHHHh
Confidence            112345788889999954 443311 135899955 4567899999999999998764

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.95  E-value=4.6e-07  Score=88.39  Aligned_cols=193  Identities=11%  Similarity=0.074  Sum_probs=107.8

Q ss_pred             CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCC-
Q psy3048         100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD-  177 (367)
Q Consensus       100 ~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~-  177 (367)
                      +.+++|.++|++||+++++|+++.++.....-+.....++ ..|++++  -|.+.+. ...|+++.++.  +...+... 
T Consensus       222 ~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDi~t~--gK~l~gG~~p~~av~~~~~--i~~~~~~~~  296 (422)
T PRK05630        222 ALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGV-TPDIMCV--GKALTGGFMSFAATLCTDK--VAQLISTPN  296 (422)
T ss_pred             HHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCC-CCCeeee--echhhcCccccceeeccHH--HHHHHhccC
Confidence            5789999999999999999999966533222111112233 4587755  7888654 24566666432  21111100 


Q ss_pred             --ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHH
Q psy3048         178 --RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       178 --~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                        ..+. ..                                         .+. .+....+....++|+.+..+.   ..
T Consensus       297 ~~~~~~-h~-----------------------------------------~T~-~g~Pla~aaa~aaL~~l~~~~---~~  330 (422)
T PRK05630        297 GGGALM-HG-----------------------------------------PTF-MANPLACAVAHASLEIIETGM---WR  330 (422)
T ss_pred             CCCccc-cC-----------------------------------------CCC-cCCHHHHHHHHHHHHHHHhCc---HH
Confidence              0000 00                                         000 111122334445566554433   34


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCC-C-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCC
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCP-P-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~-~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~  333 (367)
                      ++..++.++|.+.|+.+.....+.+ . ...++.+.+.. ......+.+.+.++|. ++.+   .+ ..+|+.+ ....+
T Consensus       331 ~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~-~~~~~~~~~~~~~~Gl-~~~~---~g-~~l~~~P-pL~it  403 (422)
T PRK05630        331 KQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQ-PVDMEEATQAAVDHGV-WLRP---FG-RLVYVMP-PYITT  403 (422)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECC-cccHHHHHHHHHHCCe-EEEe---cC-CEEEEEC-CccCC
Confidence            5777778888877765322111111 1 12344454533 1224578888888984 3432   23 5899954 56778


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQSSE  350 (367)
Q Consensus       334 ~edid~li~~l~~~~~~  350 (367)
                      ++|+|.+++.|++.+++
T Consensus       404 ~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        404 SEQIAQICAALAAAVKA  420 (422)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998764

>PRK05965 hypothetical protein; Provisional

Probab=98.94  E-value=1e-06  Score=86.84  Aligned_cols=232  Identities=16%  Similarity=0.121  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      +++++.++....  .....|++.-.....|.+    +=+++|.++|++||+++++|+.+.++.....-+.....++ ..|
T Consensus       202 ~~l~~~i~~~~~--~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PD  278 (459)
T PRK05965        202 AALRAKVAELGA--DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPD  278 (459)
T ss_pred             HHHHHHHHhcCC--CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCC
Confidence            567777754221  123455555444444554    3468999999999999999999877644332222222344 468


Q ss_pred             eeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         144 SFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       144 ~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      ++++  -|.+.+.+ -+|.++.+++- . +.+.......           ..+                           
T Consensus       279 iv~~--gKgl~gG~~Pi~av~~~~~i-~-~~~~~~~~~~-----------~~~---------------------------  316 (459)
T PRK05965        279 LMTV--AKGLTSGYVPMGAVLMSDHV-Y-QGIADGAGAA-----------APV---------------------------  316 (459)
T ss_pred             eEEe--chhhccCCcceeEEEEcHHH-H-HHHhcccccc-----------ccc---------------------------
Confidence            8887  57777663 57887775432 2 1111100000           000                           


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCce-eEEEEEcCC-------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMG-LVCFRLKGD-------  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~-~v~f~~~~~-------  293 (367)
                       ....+-.+.........+.|+.+..+   ++.++..++.++|.++|+++....++.. ...+ ++.+.+..+       
T Consensus       317 -~h~~T~~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~  392 (459)
T PRK05965        317 -GHGYTYSAHPVSAAVGLEVLRLYHEG---GLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPF  392 (459)
T ss_pred             -cccCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCC
Confidence             00000011112233344455555443   3556777888888888876532222211 1222 223333210       


Q ss_pred             ---chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 ---NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 ---~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                         ......+.+.+.++|.+ +.+   .+..++|+++ ..-.+++||+++++.|++.++++..
T Consensus       393 ~~~~~~~~~i~~~~~~~Gll-~~~---~g~~~i~~~P-pL~it~~ei~~~~~~l~~~l~~~~~  450 (459)
T PRK05965        393 DAALDPADRIFDRAYANGLV-FRA---FGDGVLGFAP-ALCCTEGEFDLIFERTRKTLDDVLA  450 (459)
T ss_pred             CchhHHHHHHHHHHHhCCeE-EEe---cCCcEEEEEC-CCcCCHHHHHHHHHHHHHHHHHHhc
Confidence               01345677888889954 332   2446799965 4567899999999999999988743

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.94  E-value=2e-07  Score=92.01  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+++..   ....+|++.-.....|.+.|    +++|.++|++||+++++|+++.++ .....+.....++ .
T Consensus       232 d~~~l~~~l~~~~---~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv-~  306 (474)
T PLN02482        232 DLEAVKKLFEANK---GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI-T  306 (474)
T ss_pred             ChHHHHHHHHhCC---CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCC-C
Confidence            7899999886532   22456666666666787766    458999999999999999999654 3221111111234 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|.+++  -|.+++..-+|.+..++ +... .+.....+....                                     
T Consensus       307 PDi~t~--gK~lggG~Pigav~g~~-ei~~-~~~~~~~~~~~~-------------------------------------  345 (474)
T PLN02482        307 PDLTTL--GKVIGGGLPVGAYGGRR-EIME-MVAPAGPMYQAG-------------------------------------  345 (474)
T ss_pred             CCEEEe--cchhhCCCceEEEEEcH-HHHH-hhccCCCccccc-------------------------------------
Confidence            587655  78887765577876543 3222 111000000000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcC------
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKG------  292 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~------  292 (367)
                           +. .+......+..+.|+.+..   ++..++..++.++|+++|+++.   ++.+......+++.+.+..      
T Consensus       346 -----T~-~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~  416 (474)
T PLN02482        346 -----TL-SGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNF  416 (474)
T ss_pred             -----Cc-chhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccCh
Confidence                 00 0111122334445555533   3456677788888888886641   2232211111233222211      


Q ss_pred             ------CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         293 ------DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       293 ------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                            +......+...+.++|. ++.+.....    ++ + ....|++|||++++++++++++
T Consensus       417 ~~~~~~d~~~~~~~~~~l~~~Gv-~~~~~~~~~----~~-p-sl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        417 ADAKKSDTAKFARFHRGMLEEGV-YLAPSQFEA----GF-T-SLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             hhhccCCHHHHHHHHHHHHHCCe-EEeccCCCC----Cc-C-CCCCCHHHHHHHHHHHHHHHHh
Confidence                  11223467778888884 444321111    12 2 3445799999999999998765

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.93  E-value=6e-07  Score=88.46  Aligned_cols=212  Identities=10%  Similarity=0.081  Sum_probs=116.3

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ...|++.-.....|.+.|    ++++.++|++||+++++|+.+.++.....-+.....++ ..|++++  -|.+++..-+
T Consensus       226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi  302 (459)
T PRK06931        226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGGLPL  302 (459)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCCcce
Confidence            345555444444455533    79999999999999999999877644332222222344 4688877  5777665556


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |.+..++ . + ..+.  +....+                                           +. .+....+...
T Consensus       303 ~av~~~~-~-~-~~~~--~~~~~~-------------------------------------------T~-~gnpla~aaa  333 (459)
T PRK06931        303 AVLGIKK-E-F-DAWQ--PGGHTG-------------------------------------------TF-RGNQLAMATG  333 (459)
T ss_pred             eeeeeHH-H-H-hhcc--CCCCCC-------------------------------------------CC-CCCHHHHHHH
Confidence            7666542 2 2 2111  100000                                           00 1111222333


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCce-eEEEEEcCC-------------chHHHHHHHH
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSMG-LVCFRLKGD-------------NDLTNQLYER  303 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~~-~v~f~~~~~-------------~~~~~~l~~~  303 (367)
                      .+.|+.+..++   ..++..++.++|.++|+++. ...++.. ...+ ++.+.+...             ......+.+.
T Consensus       334 la~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (459)
T PRK06931        334 LTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKA  410 (459)
T ss_pred             HHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHH
Confidence            44455444433   44566777777777776531 1111111 1122 223333211             1223567778


Q ss_pred             HhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         304 LMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       304 L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +.++|.+ +.+... ....+|+.+ ....+++|||.++++|++.++++.+
T Consensus       411 ~~~~Gvl-~~~~~~-~~~~l~~~P-pl~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        411 CFENGLL-LERGGR-NGNVVRLLP-PLLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             HHHCCcE-EeecCC-CCCEEEEEC-CCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            8888854 432211 235799965 5667899999999999999887543

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.93  E-value=8.3e-07  Score=87.33  Aligned_cols=227  Identities=12%  Similarity=0.156  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-CCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++++++.++...   .....|++.- .....|.+    +=++++.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       208 ~~~l~~~l~~~~---~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~  283 (453)
T PRK06943        208 LADVRRLFAERA---GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-W  283 (453)
T ss_pred             HHHHHHHHHhCC---CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-C
Confidence            467777775321   2234455543 13445654    3479999999999999999999876644332222222344 4


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+.+.+ .+|.++.+++ .. ..+....     ...       .+                         
T Consensus       284 PDivt~--gKgl~gG~~Pi~av~~~~e-i~-~~~~~~~-----~~~-------~~-------------------------  322 (453)
T PRK06943        284 PDFLCL--SKGISGGYLPLSLVLSRDA-IF-AAFYDDD-----VTR-------GF-------------------------  322 (453)
T ss_pred             CCeEee--ehhhccCcccceEEEEcHH-HH-HhhcccC-----ccC-------Cc-------------------------
Confidence            688888  57777663 5777777543 22 2111000     000       00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCce-eEEEEEcCC---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMG-LVCFRLKGD---  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~-~v~f~~~~~---  293 (367)
                         ....+-.+......+..+.|+.+..+   ++.++..++.+++.++|+++   +++.-+  ...+ ++.+.+..+   
T Consensus       323 ---~~~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~v~~v--rG~Gl~~gvel~~~~~~  394 (453)
T PRK06943        323 ---LHSHSYTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPLAAHPQVRHL--RQRGTIFAFDVALDGDA  394 (453)
T ss_pred             ---cCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCEEeE--eccccEEEEEEccCCCc
Confidence               00000011112223344445555443   34556677777777777654   333211  1222 223333211   


Q ss_pred             -chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 -~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       ......+.+.+.++|.+ +.+   .+ ..+|+++ ..-.|++|||++++.|++.++++.
T Consensus       395 ~~~~~~~i~~~~~~~Gll-~~~---~g-~~l~~~P-pl~it~~eid~~~~~l~~al~~~~  448 (453)
T PRK06943        395 ARTFSRRFFEAALERELL-LRP---IG-TTVYLMP-PYVLDDDEIAWLAERTRATLDATL  448 (453)
T ss_pred             chHHHHHHHHHHHHCCcE-EEe---cC-CEEEEeC-CCcCCHHHHHHHHHHHHHHHHHHH
Confidence             12345788888899954 332   23 3699964 456789999999999999988763

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.92  E-value=1.1e-07  Score=84.98  Aligned_cols=226  Identities=14%  Similarity=0.145  Sum_probs=128.2

Q ss_pred             CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhHHHHHhhcCcEEEEeccccccc---ccChhhhhhh
Q psy3048          63 GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSA---LLLPEYAHLK  136 (367)
Q Consensus        63 ~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~~l~~~~gi~l~vD~a~~~~~---~~~~~~~~~~  136 (367)
                      ++.|.++|.-.  +.+      .+|+++-++|+||.+   +++.+|.++|++||+++++|.|||...   .+.+. ....
T Consensus       167 Y~vDF~~l~i~--e~~------g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~-~~~w  237 (417)
T COG3977         167 YHVDFEHLHIG--EST------GAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDA-TPLW  237 (417)
T ss_pred             eccCHHHcccc--ccc------ceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccc-cccC
Confidence            56677666522  333      489999999999998   689999999999999999999997532   12221 1111


Q ss_pred             CCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCC
Q psy3048         137 RGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSK  216 (367)
Q Consensus       137 ~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (367)
                      .   .--+.++|..|.......||+++... ..++-..+...  +-+                                .
T Consensus       238 ~---~NiilC~SLSK~GLPG~R~GIiIane-~viqaitnmn~--iis--------------------------------L  279 (417)
T COG3977         238 N---ENIILCMSLSKLGLPGSRCGIIIANE-KVIQAITNMNG--IIS--------------------------------L  279 (417)
T ss_pred             C---CCEEEEeehhhcCCCCcceeEEEccH-HHHHHHHhccc--eee--------------------------------e
Confidence            1   12578889999887778899887643 32221111110  000                                0


Q ss_pred             CCCCCccccccccccccccHHHHHH----HHHHhhHHHHHHHHHH-HHHHHHHHHHHhcCCCCeEEeCCCCcee-EEEEE
Q psy3048         217 GPGGGVIQHWQTPLSRRFRALKLWM----TLRSYGLKGLQAYLRK-HISLAKKFADLVEKDDRFELVCPPSMGL-VCFRL  290 (367)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~g~~~~~~~-~~~la~~l~~~L~~~~g~~~~~~~~~~~-v~f~~  290 (367)
                      .||            +.-.+++..+    .|..+..+-++-..++ .+..-..++..|.+. .+. ++.|+-.+ .++++
T Consensus       280 ap~------------~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~~-iHkpEGAIFlWLWf  345 (417)
T COG3977         280 APG------------RMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RCL-IHKPEGAIFLWLWF  345 (417)
T ss_pred             cCC------------CccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-cee-eecCCcceeehhhh
Confidence            000            0000111110    1112222223333322 223333344455432 233 34444333 34455


Q ss_pred             cCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         291 KGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       291 ~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .+....+.+++++|..+|.+++.+..+         ...-|+|++...   +++.|++-++.|.+-++++-
T Consensus       346 ~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~---~~~~ie~Gva~lae~ve~~y  413 (417)
T COG3977         346 KDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP---EPEKIEKGVAILAEEVERAY  413 (417)
T ss_pred             ccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCC---CHHHHHHHHHHHHHHHHHHH
Confidence            554556789999999999776654332         224599996643   68889998888877776653

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.91  E-value=2.8e-07  Score=90.05  Aligned_cols=225  Identities=11%  Similarity=0.053  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh----hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL----EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl----~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++.+++..   ..+.+|++.-..+..|.+.|.    ++|.++|++||+++++|++|.++ .....+.....++ .
T Consensus       187 d~~~l~~~l~~~~---~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv-~  261 (433)
T PRK00615        187 DFQIFQTVMNSLG---HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHV-K  261 (433)
T ss_pred             CHHHHHHHHHhcC---CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCC-C
Confidence            7899999886432   224566666666667887775    49999999999999999999654 2222121112234 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++  .-|.+++..-+|+++.+++ ... .+... .+....                                     
T Consensus       262 PDi~~--~gK~lggG~p~~av~~~~~-i~~-~~~~~-~~~~~~-------------------------------------  299 (433)
T PRK00615        262 PDITV--YGKILGGGLPAAAVVAHKS-IMD-HLAPE-GTIFQA-------------------------------------  299 (433)
T ss_pred             CCeEE--EcccccCCcceeeeeecHH-HHh-hhcCC-CCcccC-------------------------------------
Confidence            58766  4788875444666666432 221 11100 000000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGD-----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~-----  293 (367)
                           .+-.+....+.+..+.|+.+..+   +..++..++.+++.++|++.   .|+.+.....-.++.+.+...     
T Consensus       300 -----~T~~g~p~~~aa~la~L~~i~~~---~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~  371 (433)
T PRK00615        300 -----GTLSGNPLAMAAGKASINLCREQ---GFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNL  371 (433)
T ss_pred             -----CCCcccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCCh
Confidence                 00011112234445555555433   34556667777776655442   133321111112222333211     


Q ss_pred             -------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 -------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 -------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                             ......+...|.++|. ++.+..... .+++     ...+++|||+++++++++++++.
T Consensus       372 ~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~~~~~-~~ls-----~~ht~~did~~~~a~~~~~~~~~  430 (433)
T PRK00615        372 AEAQLSDIEAFQTFYQSAFSKGV-YLSPSPFEA-SFLS-----SAHSMENLDYAQNVLIDSLEKVF  430 (433)
T ss_pred             HHHhhCCHHHHHHHHHHHHHCCe-eecCccccc-ccee-----cCCCHHHHHHHHHHHHHHHHHHh
Confidence                   2234467888888984 443322111 1222     22279999999999999988764

>KOG2467|consensus

Probab=98.91  E-value=8.7e-08  Score=87.76  Aligned_cols=243  Identities=16%  Similarity=0.130  Sum_probs=143.5

Q ss_pred             CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        61 ~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      .+|-||.|.||+....-     +|.+++..  .+...-.-|.+++.+||.+.|+++.+|=||=.+........   +.++
T Consensus       172 ~TG~IDYD~Le~~A~~f-----rPk~iiaG--~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip---sPFe  241 (477)
T KOG2467|consen  172 STGYIDYDKLEKTATLF-----RPKLIIAG--TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP---SPFE  241 (477)
T ss_pred             CCCceehHHHHHHHHhc-----CCcEEEec--cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC---Cccc
Confidence            57999999999875443     35554333  34455566899999999999999999999854444332222   3467


Q ss_pred             CcceeeeccccccccCCcceeEEEecchh-hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANH-LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPG  219 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (367)
                      .||+++...||.|.+|.| |++++|+.-. .+.-....-.|=..       ...++        .+ .          | 
T Consensus       242 y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~~i~ydlE-------~kINf--------aV-F----------P-  293 (477)
T KOG2467|consen  242 YCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGKEILYDLE-------DKINF--------AV-F----------P-  293 (477)
T ss_pred             ccceeeccccccccCCcc-eeEEEeccCCcCCCCCCCcceechh-------hhhhh--------hc-c----------c-
Confidence            899999999999999865 5666655311 11000000011000       01111        00 0          0 


Q ss_pred             CCccccccccccccccH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCc---
Q psy3048         220 GGVIQHWQTPLSRRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDN---  294 (367)
Q Consensus       220 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~---  294 (367)
                             .+++++.-.. .++..+|+.-..-.+.+..++...+++.|.+.|.+. |++++.. ...+++.+.+.+..   
T Consensus       294 -------~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dG  365 (477)
T KOG2467|consen  294 -------GLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDG  365 (477)
T ss_pred             -------cccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCch
Confidence                   1223332222 345566777666778888899999999999999887 8898763 35567777665532   


Q ss_pred             hHHHHHHHHHh--ccCcEEEEEeEECCeeEEEEEe---cCCCCCHHHHHHHHHHHHHHHH
Q psy3048         295 DLTNQLYERLM--SHKQIYIIKASFQGRPFLRFVV---TSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       295 ~~~~~l~~~L~--~~g~~~~~~~~~~~~~~lRi~~---~~~~~~~edid~li~~l~~~~~  349 (367)
                      ...+.+++.+.  .+....+.....-.++.+|+.-   +.....++|.+++.+-|.+.++
T Consensus       366 arvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  366 ARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             HHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            12233443321  1111111111222356789832   2233448899988888876544

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.91  E-value=1.5e-06  Score=85.92  Aligned_cols=229  Identities=15%  Similarity=0.178  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEec-CCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++.+++.++..   ......|++.- .....|.+    .=++++.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       223 ~~~l~~~~~~~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv-~  298 (472)
T PRK08742        223 ADALQALFEQS---PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV-M  298 (472)
T ss_pred             HHHHHHHHHhC---CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-C
Confidence            56667766522   12234444443 13344654    3478999999999999999999876544322222222344 4


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++.+ .+|.++.+++ .. ..+.....   ..         .+                         
T Consensus       299 PDiv~~--gKgl~gG~~Plaav~~~~e-i~-~~~~~~~~---~~---------~~-------------------------  337 (472)
T PRK08742        299 PDLLCL--SKGLTGGFLPLSAVLATQQ-LY-DAFLDDSR---ER---------AF-------------------------  337 (472)
T ss_pred             CCEEEE--cccccCCCCCcceeeccHH-HH-HHhhccCc---cC---------cc-------------------------
Confidence            688887  57776653 4777777543 11 11110000   00         00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCc-eeEEEEEcCC-c---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSM-GLVCFRLKGD-N---  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~-~~v~f~~~~~-~---  294 (367)
                         .+..+-.+......+..+.|+.+..+++   .++..++.+++.+.++.+....++.+ ... .++.+.+..+ +   
T Consensus       338 ---~h~~T~~gnpl~~Aaa~a~L~~i~~~~l---~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~~~~  411 (472)
T PRK08742        338 ---LHSHSYTGNPLACAAALATLDIFADDDV---IARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGNKRT  411 (472)
T ss_pred             ---CcCCCCCccHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCccccc
Confidence               0000011121223444455555555443   34555666666655544322222221 122 2223333211 0   


Q ss_pred             ------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         295 ------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       295 ------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                            .....+.+.+.++|.+ +.+   .+ ..+|+.+ ....+++|||.+++.|++.++++.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~Gll-~~~---~g-~vi~~~P-pL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        412 PFPPAARVGLHAYRAALARGVV-LRP---LG-DVLYWMP-PYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             cCCchhHHHHHHHHHHHHCCeE-EEe---cC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence                  1124677788888854 432   23 5899965 567789999999999999988753

>PRK06148 hypothetical protein; Provisional

Probab=98.90  E-value=4.3e-07  Score=97.47  Aligned_cols=228  Identities=13%  Similarity=0.091  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccCh-hhhhhhCCCCCc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLP-EYAHLKRGLEYV  142 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~~~~  142 (367)
                      +.+++.++....++..+..|++.-....-|.+.|    +++|.++|++||+.+++|+.+.++..... -+.+...++ ..
T Consensus       769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~P  847 (1013)
T PRK06148        769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV-VP  847 (1013)
T ss_pred             HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC-Cc
Confidence            4566666432222334556666655555677766    99999999999999999999976543221 111222344 46


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++++  -|.+++..-+|.++.+++  +...+.....+.                                         
T Consensus       848 Divt~--gK~lggG~Plgav~~~~e--i~~~~~~g~~~~-----------------------------------------  882 (1013)
T PRK06148        848 DIVTM--GKPIGNGHPMGAVVTTRE--IADSFDNGMEYF-----------------------------------------  882 (1013)
T ss_pred             ceeee--cccccCCcceEEEEEcHH--HHhhccCCCccc-----------------------------------------
Confidence            88777  688877777888887532  222111000000                                         


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCce-eEEEEEcCC------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSMG-LVCFRLKGD------  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~~-~v~f~~~~~------  293 (367)
                          .+-.+....+.+..+.|+.+..+   ++.++..++.++|+++|+++. ...++.. ...+ ++.+.+..+      
T Consensus       883 ----~Tf~gnpla~aaa~a~L~~i~~e---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~  955 (1013)
T PRK06148        883 ----NTFGGNPVSCAIGLAVLDIIEDE---DLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAP  955 (1013)
T ss_pred             ----cCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCc
Confidence                00011212234444555555444   455667788888888876641 1112111 1112 223333211      


Q ss_pred             -chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 -~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                       ......+.+.+.++|.+ +.+.... ...+|+.+ ....+++|||.+++.|+++++++
T Consensus       956 ~~~~~~~i~~~~~~~Gvl-~~~~g~~-~~vlr~~P-pl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        956 ATAIARYVKNGARERGIL-IGTEGPH-DNVLKIRP-PLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             cHHHHHHHHHHHHhCCeE-EeccCCC-CCEEEEeC-CccCCHHHHHHHHHHHHHHHHHH
Confidence             12345788888999954 4332111 36899965 56678999999999999998764

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.90  E-value=2.5e-07  Score=90.80  Aligned_cols=221  Identities=12%  Similarity=0.087  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++++++.+.+.   ...+..|++.-....-|.+    ..+++|.++|++||+++++|+.+.++.....-+.....++ ..
T Consensus       212 ~~~~~~~i~~~---~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~P  287 (443)
T PRK08297        212 LAQARAAFERH---PHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-RP  287 (443)
T ss_pred             HHHHHHHHHhC---CCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC-CC
Confidence            34555666532   2234566666555555665    6789999999999999999999976533221111111233 46


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |++++  -|.+  |  .|.++..+.  +.....   ..+... .                                    
T Consensus       288 Div~~--gK~l--~--~~a~l~~~~--i~~~~~---~~~~~~-~------------------------------------  319 (443)
T PRK08297        288 DIVAF--GKKT--Q--VCGIMAGRR--VDEVED---NVFAVS-S------------------------------------  319 (443)
T ss_pred             CEEEe--cccc--c--ccceecchH--HHHhhh---hhccCc-c------------------------------------
Confidence            88875  5665  2  334444332  111000   000000 0                                    


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCe--EEeCCCCceeEEEEEcCCchH
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRF--ELVCPPSMGLVCFRLKGDNDL  296 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~--~~~~~~~~~~v~f~~~~~~~~  296 (367)
                       ....+-.+......+..+.|+.+..+   ++.++..++.+++.++|+++    +.+  ++-  ..-.++.+.+.. ...
T Consensus       320 -~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr--g~G~~~~i~~~~-~~~  392 (443)
T PRK08297        320 -RINSTWGGNLVDMVRARRILEVIEED---GLVENAARQGEYLLARLEELAAEFPAVVSNVR--GRGLMCAFDLPT-TAD  392 (443)
T ss_pred             -ccCCCCCccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHCCCcceeee--ccceEEEEEecC-HHH
Confidence             00011111112223334444444333   45566777778887777653    322  221  123445555543 334


Q ss_pred             HHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         297 TNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       297 ~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...+.+.+.++|.+ +.+   .+...+|+++ ....+++|+|.++++|+++++++
T Consensus       393 ~~~~~~~l~~~Gvl-~~~---~~~~~lr~~P-~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        393 RDEVIRRLWEEGVL-VLP---CGERSIRFRP-ALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             HHHHHHHHHHCCEE-Eec---CCCCeEEEEC-CccCCHHHHHHHHHHHHHHHHhh
Confidence            56788889988854 432   2335799965 46678999999999999998764

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.89  E-value=3e-07  Score=90.07  Aligned_cols=217  Identities=14%  Similarity=0.106  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      ++++++.+..   ....+..|++.-.....|.+    +.+++|.++|++||+.+++|+.++++.....-+.....++ ..
T Consensus       205 l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv-~P  280 (431)
T TIGR03251       205 LRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-QP  280 (431)
T ss_pred             HHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCC-CC
Confidence            3444555542   12235567776665656765    4789999999999999999999986544322212212234 46


Q ss_pred             ceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       143 D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      |+++++  |.+  | .+|++ ..+.  +.....   ........                                    
T Consensus       281 Di~~~g--K~~--~-~~g~~-~~~~--i~~~~~---~~~~~~~~------------------------------------  313 (431)
T TIGR03251       281 DIVAFG--KKT--Q-VCGIM-AGRR--VDEVAD---NVFAVPSR------------------------------------  313 (431)
T ss_pred             CEEEec--ccC--c-cceEE-ecch--HHHhhh---hcccCccc------------------------------------
Confidence            888764  433  2 34444 3222  111000   00000000                                    


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCC-ceeEEEEEcCCchHH
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPS-MGLVCFRLKGDNDLT  297 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~-~~~v~f~~~~~~~~~  297 (367)
                        ...+-.+......+..++|+.+..++   +.++..++.+++.++|++    .+++. ..... -.++.+.++. ....
T Consensus       314 --~~~T~~gnpl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i-~~vrg~G~~~~i~~~~-~~~~  386 (431)
T TIGR03251       314 --LNSTWGGNLVDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAEFPHLV-SNPRGRGLMCAFDLPS-TADR  386 (431)
T ss_pred             --cCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCccce-ecccccceeEEEEeCC-HHHH
Confidence              00000111122344445555554444   334555566666655544    33221 11122 2344566643 3345


Q ss_pred             HHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       298 ~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      ..+.+.|.++|.+ +.+   .+...+|+++ ...++++|||+++++|++
T Consensus       387 ~~~~~~l~~~Gvl-~~~---~g~~~lr~~P-~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       387 DEVIRQLYREGVL-LLG---CGERSIRFRP-PLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             HHHHHHHHhCCeE-Eec---CCCCeEEEEC-CccCCHHHHHHHHHHHHh
Confidence            5788889988854 332   2335799965 577899999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK07482 hypothetical protein; Provisional

Probab=98.89  E-value=1.7e-06  Score=85.32  Aligned_cols=234  Identities=12%  Similarity=0.063  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++++|++.++...  .....+|++.-.....|.+    .=+++|.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       205 ~~~~l~~~~~~~~--~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~  281 (461)
T PRK07482        205 CADELEELILAEG--PDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-E  281 (461)
T ss_pred             HHHHHHHHHHhcC--CCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-C
Confidence            4567777775321  1223455555444444555    2468999999999999999999877644332222222344 4


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+.+.+ .+|.++.+++ .. ..+......  .+         .+                    .    
T Consensus       282 PDiv~~--gKgl~gG~~Pi~av~~~~~-i~-~~~~~~~~~--~~---------~~--------------------~----  322 (461)
T PRK07482        282 PDLITV--AKGLTSAYAPLSGSIVGEK-VW-DVLEQGSDE--HG---------AI--------------------G----  322 (461)
T ss_pred             CCEEEE--ccccccCccccceeeecHH-HH-HHHhccccc--CC---------cc--------------------c----
Confidence            688886  58887654 5677776543 11 111100000  00         00                    0    


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEeCC-CCc-eeEEEEEcCCc---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCP-PSM-GLVCFRLKGDN---  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~g~~~~~~-~~~-~~v~f~~~~~~---  294 (367)
                         ...+. .+....+.+..+.|+.+..++   ..++..++.+++.++|+++ ....++.. ... .++.+.+....   
T Consensus       323 ---h~~T~-~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~  395 (461)
T PRK07482        323 ---HGWTY-SGHPICAAAALANLDILEREN---LVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDR  395 (461)
T ss_pred             ---cCCCC-CcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcC
Confidence               00000 112122334445555554433   4455667777777777542 11111111 122 22233332110   


Q ss_pred             -------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         295 -------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       295 -------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                             .....+.+.+.++|.+ +.+.  .+...+|+.+ ....+++|||++++.|++.++++.
T Consensus       396 ~~~~~~~~~~~~i~~~~~~~Gvl-~~~~--~~~~~i~~~P-pl~it~~ei~~~~~~l~~~l~~~~  456 (461)
T PRK07482        396 TPFDPALKIGPQVSAAALERGVI-ARAM--PHGDILGFAP-PLVLTRAEADEIVAIAKDAVDEVL  456 (461)
T ss_pred             CCCChhhHHHHHHHHHHHHCCcE-EecC--CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   1235778888999954 3211  1235799854 566789999999999999988763

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.89  E-value=1.3e-06  Score=86.16  Aligned_cols=231  Identities=13%  Similarity=0.114  Sum_probs=124.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEec-CCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      +++.+++.++..   +.....|++.- .....|.+    +=++++.++|++||+++++|+.+.++.....-+.....++ 
T Consensus       209 ~~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv-  284 (460)
T PRK06916        209 HLEELEELLKEK---HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENV-  284 (460)
T ss_pred             HHHHHHHHHHhC---CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCC-
Confidence            356667767532   12234455443 23444554    3478999999999999999999876533332222222344 


Q ss_pred             CcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPG  219 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (367)
                      ..|++++  -|.+.+.+ .+|.++.+++ .. ..+.  +.+....         .+                        
T Consensus       285 ~PDiv~~--gK~l~gG~~Pi~av~~~~e-i~-~~~~--~~~~~~~---------~~------------------------  325 (460)
T PRK06916        285 TPDIMTA--GKGLTGGYLPIAITVTTDE-IY-NAFY--GDYEEQK---------TF------------------------  325 (460)
T ss_pred             CCCeeee--ehhhhcCccccceeeecHH-HH-HHhh--ccccccC---------cc------------------------
Confidence            4688766  67776653 5777777543 22 1111  0000000         00                        


Q ss_pred             CCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCce-eEEEEEcCCc---
Q psy3048         220 GGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMG-LVCFRLKGDN---  294 (367)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~-~v~f~~~~~~---  294 (367)
                          .+..+-.++...+....+.|+.+..+   ++.++..++.+++.+.|+++....++.. ...+ ++.+.+..+.   
T Consensus       326 ----~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~  398 (460)
T PRK06916        326 ----FHGHSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETK  398 (460)
T ss_pred             ----ccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccc
Confidence                00000111212233344445544443   3556778888888888876532211211 1221 2223332110   


Q ss_pred             -------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         295 -------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       295 -------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                             .....+...+.++|.+ +.+   .+ ..+|+.+ ....+++|||.++++|++.++++.
T Consensus       399 ~~~~~~~~~~~~i~~~~~~~Gvl-~~~---~g-~~l~~~P-pl~it~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        399 EPFEWTERVGVQVCKRSRELGML-TRP---LG-NTIVFMP-PLASTIDELDEMLRILYKAISDVT  457 (460)
T ss_pred             cCCCchhhHHHHHHHHHHHCCeE-EEe---cC-CEEEEeC-CcccCHHHHHHHHHHHHHHHHhhc
Confidence                   1134677888889954 432   23 4799854 566789999999999999988754

>PRK06917 hypothetical protein; Provisional

Probab=98.88  E-value=2e-06  Score=84.54  Aligned_cols=233  Identities=13%  Similarity=0.078  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      ++.+++.++....  ....+|++.-..... |.+    +=+++|.++|++||+++++|+.+.++.....-+.....++ .
T Consensus       185 ~~~le~~i~~~~~--~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv-~  261 (447)
T PRK06917        185 ATELETAIERIGA--EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGV-E  261 (447)
T ss_pred             HHHHHHHHHhcCC--CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCC-C
Confidence            3566666653221  123445544333223 344    2378999999999999999999876533322221112233 3


Q ss_pred             cceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++.+ ..|++..+++ .. ..+......+...                                    
T Consensus       262 PDi~~~--gK~l~~G~~Pi~a~~~~~~-i~-~~~~~~~~~~~~~------------------------------------  301 (447)
T PRK06917        262 PDIMTL--GKGLGAGYTPIAATVVSDR-VM-EPILRGSRSIMSG------------------------------------  301 (447)
T ss_pred             CCEEEe--eehhccCCcceEEEEEcHH-HH-HHHhccCcccccc------------------------------------
Confidence            587666  68887653 4677776542 22 2111111111000                                    


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCC-CCc-eeEEEEEcCC----
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCP-PSM-GLVCFRLKGD----  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~-~~~-~~v~f~~~~~----  293 (367)
                            .+-.++.....+..+.|+.+..+   ++.++..++.++|.+.|+++. ...++.. ... .++.+.+..+    
T Consensus       302 ------~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~  372 (447)
T PRK06917        302 ------HTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTK  372 (447)
T ss_pred             ------cCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcC
Confidence                  00011112233444455554433   355677777788877776642 1222211 112 2223333110    


Q ss_pred             ------chHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 ------NDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 ------~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                            ......+.+.+.++|.+ +.+...    .....+|+++ ....|++|||.++++|++.++++..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~Gvl-~~~~~~~~~g~~~~~i~l~P-pl~it~~eid~~~~~l~~~l~~~~~  440 (447)
T PRK06917        373 QPFSKSQAVASELISVAAKNGLL-LYPAVAGQDGKEGDAVIIAP-PMTITYSELDELLSIFAKSVEEMMQ  440 (447)
T ss_pred             CCCcchhHHHHHHHHHHHhCCcE-EEecccccCCCCCCEEEEEC-CCcCCHHHHHHHHHHHHHHHHHHHH
Confidence                  12345777888899954 433211    1135899954 4567899999999999999988743

>PRK07480 putative aminotransferase; Validated

Probab=98.88  E-value=1.3e-06  Score=86.04  Aligned_cols=228  Identities=12%  Similarity=0.052  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      +.|++.+.+..  ......|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..|
T Consensus       206 ~~l~~~~~~~~--~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PD  282 (456)
T PRK07480        206 RQLEAKILELG--ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPD  282 (456)
T ss_pred             HHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCC
Confidence            45555553321  112345555544444577665    89999999999999999999976533222111112244 458


Q ss_pred             eeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         144 SFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       144 ~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      ++++  -|.+.+.+ .+|.++.+++ .. ..+......+...                                      
T Consensus       283 iv~~--gK~l~gG~~Pi~av~~~~~-i~-~~~~~~~~~~~~~--------------------------------------  320 (456)
T PRK07480        283 LMTI--AKGLTSGYIPMGAVGVGDR-VA-EVLIEEGGEFNHG--------------------------------------  320 (456)
T ss_pred             eeee--ehhhccCCccceEEEEcHH-HH-HHHhcCCCCcccC--------------------------------------
Confidence            7666  68777642 3677777533 22 2220000000000                                      


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHhcCCCCeEEeCC-CCc-eeEEEEEcCC------
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH-ISLAKKFADLVEKDDRFELVCP-PSM-GLVCFRLKGD------  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~-~~la~~l~~~L~~~~g~~~~~~-~~~-~~v~f~~~~~------  293 (367)
                          .+-.+....+.+..+.|+.+..++   ..++. .++.++|.++|+++....++.. ... .++.+.+..+      
T Consensus       321 ----~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~  393 (456)
T PRK07480        321 ----FTYSGHPVAAAVALANLRILRDEG---IVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRER  393 (456)
T ss_pred             ----CCCCcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEecccccccc
Confidence                000111122344445555554444   33455 3666677666655422111111 111 2223333110      


Q ss_pred             ----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 ----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 ----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                          ......+.+.+.++|.+ +.+   .+ ..+|+++ ....+++|||.+++.|++.+.++.+
T Consensus       394 ~~~~~~~~~~~~~~~~~~Gll-~~~---~~-~~l~~~P-pl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        394 FEAGGGVGTICRDHCFANGLI-MRA---VG-DRMIISP-PLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             CcchhhHHHHHHHHHHHCCcE-Eee---cC-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                01124667778889954 332   22 4799854 4566899999999999999887644

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.87  E-value=9.8e-07  Score=84.29  Aligned_cols=206  Identities=14%  Similarity=0.066  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CC---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |++.+++.+.+.+      ..|++......-|.+ .|   +++|.++|++||+++++|+.+.+. ....-+.....++ .
T Consensus       151 d~~~l~~~i~~~~------aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv-~  222 (364)
T PRK04013        151 DVEAAKEAITKET------AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKV-E  222 (364)
T ss_pred             CHHHHHHHhcCCc------EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCC-C
Confidence            6788888886433      466666554444554 34   999999999999999999998865 3222222212233 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  -|.+++..-+|.++.+..  +.      +..  ..                                     
T Consensus       223 PDiv~~--gK~lggG~P~~a~~~~~~--~~------~~~--~~-------------------------------------  253 (364)
T PRK04013        223 PDIVTM--GKGIGNGVPVSLTLTNFD--VE------RGK--HG-------------------------------------  253 (364)
T ss_pred             CCEEEe--cccccCCceeEEEEeccc--cc------CCC--cC-------------------------------------
Confidence            587777  577766555666665432  10      000  00                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCc-eeEEEEEcCCchHHHHH
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM-GLVCFRLKGDNDLTNQL  300 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~-~~v~f~~~~~~~~~~~l  300 (367)
                           .+-.+....+.+..+.|+.+.++++.+..++   +   + +.+.. +-  +..-... -++.+.+.. .  ...+
T Consensus       254 -----~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~---~---l-~~l~~-~~--v~~vRG~Gl~~gve~~~-~--~~~i  315 (364)
T PRK04013        254 -----STFGGNPLACKAVAVTLRILRRERLVEKAGE---K---F-IEIKG-ER--VVTTRGRGLMIGIVLKK-P--VGKY  315 (364)
T ss_pred             -----CCCCcCHHHHHHHHHHHHHHHhccHHHHHHH---H---H-HHhcc-Cc--ceeeeeCcEEEEEEeCC-c--HHHH
Confidence                 0001122233455556666666554443332   2   2 22222 21  1111222 233344432 1  4568


Q ss_pred             HHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       301 ~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .+.+.++|.+ +.+   .+...+|+.+ ....+++|++.+++.|++.++++
T Consensus       316 ~~~~~~~Gll-~~~---~g~~vlr~~P-pl~it~~~i~~~~~~l~~~l~~~  361 (364)
T PRK04013        316 VEELQNRGYL-VHT---AGQRVIRLLP-PLIISKDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             HHHHHhCCcE-Eee---CCCCEEEEeC-CcccCHHHHHHHHHHHHHHHHHH
Confidence            8888888854 332   2446899965 56778999999999999998765

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.85  E-value=3e-07  Score=84.20  Aligned_cols=274  Identities=18%  Similarity=0.208  Sum_probs=158.6

Q ss_pred             ceEEEecCCcchhHHHH-HHhCCcceEEEecC----------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          30 RLVAYASDQSNSSVEKS-AIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~-~~~~g~~v~~v~~~----------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      .++++  ++.|+..-++ .+..|+.++-++.+          -.|.+|++.|++.|++... ...|.++..+..++.-|+
T Consensus       125 ~~~~~--sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~-~nvp~I~~tiT~NsagGQ  201 (471)
T COG3033         125 KMVAF--SNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGA-DNVPYIVLTITNNSAGGQ  201 (471)
T ss_pred             ccccc--ccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCc-ccCcEEEEEEeccccCCC
Confidence            45554  3677776554 55678877766653          2478999999999998764 334666666666676776


Q ss_pred             c---CChhhHHHHHhhcCcEEEEeccccc-ccccCh----hhh-----hhh-CCCCCcceeeeccccccccCCcceeEEE
Q psy3048          99 F---DNLEELGPICQEYNIWLHVDAAYAG-SALLLP----EYA-----HLK-RGLEYVDSFAFNAHKWLLTNHDCSAMWV  164 (367)
Q Consensus        99 i---~dl~~I~~l~~~~gi~l~vD~a~~~-~~~~~~----~~~-----~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~~  164 (367)
                      -   ..++++.+||++|+++++.|+|.-+ ..++..    .++     ... .-++.+|-++.|+.|=..++.| |++.+
T Consensus       202 pVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~  280 (471)
T COG3033         202 PVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCF  280 (471)
T ss_pred             cchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEe
Confidence            4   7889999999999999999997532 112221    111     100 1136899999999999887754 67778


Q ss_pred             ecchhhhhhccCCc-cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH
Q psy3048         165 KNANHLTNTFFTDR-VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL  243 (367)
Q Consensus       165 ~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (367)
                      +++..+.-...... .-+..+       .+.|                       |       .+ .++..  -++...|
T Consensus       281 ~D~~~fDvy~~~~~~~V~~eG-------~~tY-----------------------G-------gl-~Grdm--ealAvGL  320 (471)
T COG3033         281 KDDSFFDVYEECRTLVVVQEG-------FPTY-----------------------G-------GL-AGRDM--EALAVGL  320 (471)
T ss_pred             cCccHHHHHHHHHhheEeecc-------cccc-----------------------C-------cc-cchhH--HHHHHHH
Confidence            77753210000000 001111       1111                       0       00 01111  1222222


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcC----C--chH-HHHHHHHHhccCcE-EEEEe
Q psy3048         244 RSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKG----D--NDL-TNQLYERLMSHKQI-YIIKA  315 (367)
Q Consensus       244 ~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~----~--~~~-~~~l~~~L~~~g~~-~~~~~  315 (367)
                      ..--   -...+++..+..+||.+.|.+. |+.+..|..-+.+.+....    .  +.. .+.+.-.|..++.+ .+.-+
T Consensus       321 ~e~~---~~~yl~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG  396 (471)
T COG3033         321 REGV---NFDYLAHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELG  396 (471)
T ss_pred             HHhc---CcHHHHHHHHHHHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeee
Confidence            2211   1334556677789999999987 8887777655555553211    1  111 23444455444322 22111


Q ss_pred             EE-------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 SF-------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 ~~-------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .+             ..-..+|+++....-|.+.+|.++++++++.++-
T Consensus       397 ~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~  445 (471)
T COG3033         397 SFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA  445 (471)
T ss_pred             ceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence            11             1124799987555456899999999999998764

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.83  E-value=5.9e-07  Score=88.18  Aligned_cols=216  Identities=13%  Similarity=0.057  Sum_probs=121.0

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC-
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-  140 (367)
                      +++.|++++++..   .....|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++. 
T Consensus       237 ~l~~l~~~l~~~~---~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~  313 (464)
T TIGR00699       237 CLEEVEDLIKKWH---KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDD  313 (464)
T ss_pred             HHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCC
Confidence            3566777775321   22455666655566688888    999999999999999999999765432222222223453 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      +.|++++  -|.+++   .|++ +.. +.+.   ...+.+..                                      
T Consensus       314 ~PDi~t~--gK~lg~---gG~~-~~~-~~~~---~~~~~~~~--------------------------------------  345 (464)
T TIGR00699       314 PPDMVTF--SKKFQT---AGYF-FHD-PAFR---PNKPYRQF--------------------------------------  345 (464)
T ss_pred             CCCEEEe--hhhhcc---CCcc-ccc-hhcc---CCCCcccc--------------------------------------
Confidence            4788666  576631   2322 211 1110   00000000                                      


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeE-EeCC----CCceeEEEEEcCCc
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFE-LVCP----PSMGLVCFRLKGDN  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~-~~~~----~~~~~v~f~~~~~~  294 (367)
                            ++-.+....+....+.|+.+..+   +..++..++.++|.++|+++. .+. ++..    ....++.+.++. .
T Consensus       346 ------~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~-~  415 (464)
T TIGR00699       346 ------NTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD-E  415 (464)
T ss_pred             ------cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC-H
Confidence                  00011112223334455555443   344566666777777775531 122 1111    233444555543 2


Q ss_pred             hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         295 DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       295 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .....+.+.+.++|.+ +.+   .+...+|+++ ....+++|||.++++|++.
T Consensus       416 ~~~~~i~~~~~~~Gvl-~~~---~g~~~ir~~P-pl~it~~eid~~~~~l~~~  463 (464)
T TIGR00699       416 AKRDKLLKKARNNGVN-IGG---CGVKAIRLRP-MLVFQKHHADIFLEIISKI  463 (464)
T ss_pred             HHHHHHHHHHHHCCcE-Eec---CCCCeEEEeC-CCCCCHHHHHHHHHHHHHh
Confidence            3456788889999954 432   2446899965 5677899999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.82  E-value=2.5e-07  Score=85.69  Aligned_cols=264  Identities=16%  Similarity=0.165  Sum_probs=162.0

Q ss_pred             cCceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CCh
Q psy3048          28 KSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNL  102 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl  102 (367)
                      .++-.|++|+.+..-........|.+++..|.-  ++..+|.+.+.+.|+...+.   -+++....++||||.-   +.+
T Consensus       118 ~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~---~vvLLH~CcHNPTG~D~t~~qW  194 (396)
T COG1448         118 FPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEG---SVVLLHGCCHNPTGIDPTEEQW  194 (396)
T ss_pred             CCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCC---CEEEEecCCCCCCCCCCCHHHH
Confidence            346679999988887777777889999998873  45669999999999876542   2556666688999975   678


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccCh--hhhhhhC-CCCCcceeeeccccccccC-CcceeEEE--ecchhhhhhccC
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKR-GLEYVDSFAFNAHKWLLTN-HDCSAMWV--KNANHLTNTFFT  176 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~-~~~~~D~~~~~~hK~l~~p-~g~g~l~~--~~~~~~~~~~~~  176 (367)
                      .+|.++.++.|..-++|-||-++.--.+  .+.-+.- .....=+++.|..|.|+.- -.+|.+.+  .+.+...+.++.
T Consensus       195 ~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sq  274 (396)
T COG1448         195 QELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQ  274 (396)
T ss_pred             HHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHH
Confidence            9999999999999999999866433222  1111100 0011145666789988754 23444333  333333332211


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                      -+.-+...-    +..+.+                       |+.           -+..+--...|+....+.+..+..
T Consensus       275 lk~~iR~~y----SnPP~~-----------------------Ga~-----------vva~IL~~p~Lra~W~~El~~Mr~  316 (396)
T COG1448         275 LKAIIRTNY----SNPPAH-----------------------GAA-----------VVATILNNPELRAEWEQELEEMRQ  316 (396)
T ss_pred             HHHHHHhcc----CCCchh-----------------------hHH-----------HHHHHhCCHHHHHHHHHHHHHHHH
Confidence            111111110    011111                       000           000000012345555666788888


Q ss_pred             HHHHHHHHHHHHhcCC-C--CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCC
Q psy3048         257 KHISLAKKFADLVEKD-D--RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~-~--g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~  333 (367)
                      |..++++.|.+.|+.. +  .|..+ ..+.++++|.     ..+.+-.++|.++..+|...+   |    |+++.  ..+
T Consensus       317 Ri~~mR~~lv~~L~~~~~~~~f~~i-~~Q~GMFsy~-----Gls~~QV~rLree~~IY~v~s---G----Ri~va--Gl~  381 (396)
T COG1448         317 RILEMRQALVDALKALGAPRNFDFI-ISQRGMFSYT-----GLSPEQVDRLREEFGIYLVAS---G----RINVA--GLN  381 (396)
T ss_pred             HHHHHHHHHHHHHHhhCCCcccchH-hhcCceeecC-----CCCHHHHHHHHHhccEEEecC---C----eeeec--cCC
Confidence            9999999999999873 2  24443 3466777663     335677778888877776422   2    77653  346


Q ss_pred             HHHHHHHHHHHHHH
Q psy3048         334 QCDVAFAWNEISHQ  347 (367)
Q Consensus       334 ~edid~li~~l~~~  347 (367)
                      +..|+++.++|.++
T Consensus       382 ~~ni~~va~ai~~v  395 (396)
T COG1448         382 TSNIDYVAKAIAAV  395 (396)
T ss_pred             hhhHHHHHHHHHhh
Confidence            88899999998875

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=98.80  E-value=7.5e-06  Score=80.76  Aligned_cols=210  Identities=15%  Similarity=0.063  Sum_probs=111.5

Q ss_pred             EEEEEecCCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      ..|++.-.....|.+-    -+++|.++|++||+++++|+.+.++......+.....++ ..|++  +..|.+.....+|
T Consensus       221 Aavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pig  297 (451)
T PRK06918        221 AAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPIS  297 (451)
T ss_pred             EEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCccE
Confidence            3444443333335432    288999999999999999999876644322111111122 24744  5688888777788


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++.+.+ ... .+.  ...  ..                                          .+-.+..+.+....
T Consensus       298 ~v~~~~~-i~~-~~~--~~~--~~------------------------------------------~T~~g~~l~~aaa~  329 (451)
T PRK06918        298 GVIGRKE-IMD-ESA--PGE--LG------------------------------------------GTYAGSPLGCAAAL  329 (451)
T ss_pred             EEEEcHH-HHh-ccC--CCC--cC------------------------------------------cCCCcCHHHHHHHH
Confidence            8887532 221 111  000  00                                          00011112223333


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEc-C------CchHHHHHHHHHhccCc
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLK-G------DNDLTNQLYERLMSHKQ  309 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~-~------~~~~~~~l~~~L~~~g~  309 (367)
                      +.++.+..+.+   .++..++.+++.++|+++    +.+.-+.. .-.+..+.+. +      .......+.+.+.++|.
T Consensus       330 a~l~~i~~~~~---~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg-~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv  405 (451)
T PRK06918        330 AVLDIIEKENL---NDRAIELGKVVMNRFEEMKNKYNCIGDVRG-LGAMCAFELVQDRKTKEPDKTLTANICKEANKRGL  405 (451)
T ss_pred             HHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHhhCCCceeecc-ceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCe
Confidence            44554433333   344555566666666543    21111111 2222333331 1      12234567777888885


Q ss_pred             EEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         310 IYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       310 ~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      . +.+....+ .++|++++ ...++++|+.++++|++.++++.
T Consensus       406 l-v~~~~~~~-~~lrl~p~-l~~t~~~id~~l~~l~~~l~~~~  445 (451)
T PRK06918        406 L-LLSAGTYG-NVIRVLMP-LVITDEQLEEGLTIIEESLQACY  445 (451)
T ss_pred             E-EeecCCCC-CEEEEECC-CccCHHHHHHHHHHHHHHHHHHH
Confidence            4 43322112 58999653 33679999999999999988764

>KOG0633|consensus

Probab=98.79  E-value=2.5e-07  Score=81.16  Aligned_cols=253  Identities=13%  Similarity=0.069  Sum_probs=138.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +..|+....++.-..-.+.+.+++|+.+|.+.++.++++++.+.++.+.+    ++++.++++.|++|.+-..+.|-++.
T Consensus       111 keKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~----iK~~F~tSPgNPtg~~ik~~di~KiL  186 (375)
T KOG0633|consen  111 KEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSK----IKCIFLTSPGNPTGSIIKEDDILKIL  186 (375)
T ss_pred             ccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhcccc----ceEEEEcCCCCCCcccccHHHHHHHH
Confidence            34444443333222223456899999999999999999999999987754    67999999999999986666666665


Q ss_pred             hhc-CcEEEEecccccccccChhhhhhhCCCCCcceee-ecccccccc-CCcceeEEEecchhhhhhc-cCCccccccCC
Q psy3048         110 QEY-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA-FNAHKWLLT-NHDCSAMWVKNANHLTNTF-FTDRVYLKHTD  185 (367)
Q Consensus       110 ~~~-gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~-~~~hK~l~~-p~g~g~l~~~~~~~~~~~~-~~~~~yl~~~~  185 (367)
                      +.. +..++||+||=-+.......++ +.  ++-..++ -...|-++. +...|+-++  ...+...+ ...++|--+  
T Consensus       187 e~p~nglVVvDEAYidFsg~~S~~~l-V~--kYpNLivlqTlSKsfGLAGiRvG~~~~--~~~ia~iln~~KaPYNiS--  259 (375)
T KOG0633|consen  187 EMPDNGLVVVDEAYIDFSGVESRMKL-VK--KYPNLIVLQTLSKSFGLAGIRVGYGAF--PLSIAEILNRAKAPYNIS--  259 (375)
T ss_pred             hCCCCcEEEEeeeeEeeccccccchH-hH--hCCceeehhhhhhhcCcceeEeecccc--cHHHHHHHHhccCCcccc--
Confidence            543 7899999997322211111110 00  1112222 223454432 122333222  11121111 111222100  


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---LKGLQAYLRKHISLA  262 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~~~~~~~~la  262 (367)
                                                                        ...-.++|+.+.   .+-++....-..+-.
T Consensus       260 --------------------------------------------------~~~s~~AL~Als~~n~kkme~~rdaiv~er  289 (375)
T KOG0633|consen  260 --------------------------------------------------VAGSVAALAALSDSNGKKMEDVRDAIVRER  289 (375)
T ss_pred             --------------------------------------------------chhHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence                                                              011122233322   223444444455666


Q ss_pred             HHHHHHhcCCCCeEE-eCCCCceeEEEEEcC-CchHHHHHHHHHhccCcEEEEE-eEEC-CeeEEEEEecCCCCCHHHHH
Q psy3048         263 KKFADLVEKDDRFEL-VCPPSMGLVCFRLKG-DNDLTNQLYERLMSHKQIYIIK-ASFQ-GRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~-~~~~~~~~v~f~~~~-~~~~~~~l~~~L~~~g~~~~~~-~~~~-~~~~lRi~~~~~~~~~edid  338 (367)
                      .++...|..++++.= +++...+.+..++.+ ++..++.++..+..+-.+.+.. +.-. -.+++||++.    ++|+-+
T Consensus       290 ~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG----t~Eent  365 (375)
T KOG0633|consen  290 ERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG----TPEENT  365 (375)
T ss_pred             HHHHHHhhcCccccCCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC----Ccccch
Confidence            778888888876652 334566777777654 3455556665555443343332 2222 3679999764    467778


Q ss_pred             HHHHHHHHH
Q psy3048         339 FAWNEISHQ  347 (367)
Q Consensus       339 ~li~~l~~~  347 (367)
                      -+++.|++.
T Consensus       366 vL~k~~K~~  374 (375)
T KOG0633|consen  366 VLMKCLKQF  374 (375)
T ss_pred             HHHHHHHhh
Confidence            888888765

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.79  E-value=2.2e-06  Score=82.30  Aligned_cols=284  Identities=13%  Similarity=0.094  Sum_probs=145.6

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCce-EEEecCCcchhHHHHHHhCCc-------------ceEEEecCC------
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRL-VAYASDQSNSSVEKSAIIGDV-------------PVRQLRSDD------   61 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~s~~~H~s~~~~~~~~g~-------------~v~~v~~~~------   61 (367)
                      +||++|++|+..+-+           .++. .|=.....|=+...++...|.             .+..++...      
T Consensus       120 tAlKma~qY~~~~G~-----------p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~  188 (449)
T COG0161         120 TALKMALQYWRARGQ-----------PQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGF  188 (449)
T ss_pred             HHHHHHHHHHHhcCC-----------CcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCC
Confidence            689999999996621           2233 333344455555555544441             222333321      


Q ss_pred             CCC------cCHHHHHHHHHHHhhCCCccEEEEEecCCCc-ccccC----ChhhHHHHHhhcCcEEEEecccccccccCh
Q psy3048          62 NGV------LRGDALLTAVKEDLAKGLIPCCLVATLGTTG-TCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLP  130 (367)
Q Consensus        62 ~~~------~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~-~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~  130 (367)
                      ++.      -..++|++.+.+...  .....+++--..-. .|.+-    =+++|.+||++||++++.|+.-.++.....
T Consensus       189 ~~~~~~~~~~~a~~le~~i~~~g~--~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~  266 (449)
T COG0161         189 FGEGDEEFAEAADELEALILEHGP--ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK  266 (449)
T ss_pred             CCCChHHHHHHHHHHHHHHHhcCc--ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch
Confidence            111      224556666655321  22233333322222 45553    379999999999999999997655443322


Q ss_pred             hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCc
Q psy3048         131 EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLP  208 (367)
Q Consensus       131 ~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (367)
                      .+.....++ ..|+++.+  |.+.+. ...|.+++.+.  +-+.+... ..-+.++                        
T Consensus       267 ~FA~e~~gi-~PDi~~~a--KGLT~GY~Pl~a~l~~~~--I~~~~~~~~~~~f~HG------------------------  317 (449)
T COG0161         267 MFACEHAGI-VPDILCLA--KGLTGGYLPLSAVLTSDR--IYEAFSDGDAGAFMHG------------------------  317 (449)
T ss_pred             hhhhhhcCC-CCCeeeec--ccccccchhhHhHhhhHH--HHHHHhcccCCeeccC------------------------
Confidence            222111233 34877664  666544 23555555432  22222111 1111111                        


Q ss_pred             chhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEeCC-CCceeE
Q psy3048         209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK-DDRFELVCP-PSMGLV  286 (367)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~-~~g~~~~~~-~~~~~v  286 (367)
                                       ++..+ ....+....+.|+.+.+++   +.++..++..++.++|++ +++...+.+ ...+.+
T Consensus       318 -----------------~TYsg-hPlacAaAla~L~i~e~e~---l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli  376 (449)
T COG0161         318 -----------------HTYSG-NPLACAAALANLDILEEED---LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLI  376 (449)
T ss_pred             -----------------Ccccc-CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceE
Confidence                             11111 1111223334444444444   445667888888888876 433223322 233333


Q ss_pred             -EEEEcCC--------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         287 -CFRLKGD--------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       287 -~f~~~~~--------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                       .+.+..+        ......+.++..++|. ++.|.   |. .+=+++ ..-.|++|||++++.+++.+++....
T Consensus       377 ~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl-~iRp~---g~-~i~~~P-Pliit~~eid~l~~~l~~al~~~~~~  447 (449)
T COG0161         377 GAIELVADKATKTPFEARVGARVRAAALERGL-LIRPL---GD-VIYLMP-PLIITREEIDELVDALREALDETLAD  447 (449)
T ss_pred             EEEEEecccccccchhhhHHHHHHHHHHHCCe-EEeec---CC-EEEEcC-CccCCHHHHHHHHHHHHHHHHHHHhc
Confidence             3333221        1234577888888984 45443   32 344433 34578999999999999999876543

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.76  E-value=7.7e-07  Score=84.54  Aligned_cols=235  Identities=14%  Similarity=0.079  Sum_probs=127.6

Q ss_pred             eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccC
Q psy3048          54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLL  129 (367)
Q Consensus        54 v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~  129 (367)
                      +..++.+     |++.+++++++...   ...+|++.-.....|.+.|    ++++.++|++||+.+|.|+...++-...
T Consensus       179 ti~~~yN-----D~~al~~~~~~~g~---~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~  250 (432)
T COG0001         179 TLVLPYN-----DLEALEEAFEEYGD---DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL  250 (432)
T ss_pred             EEEecCC-----CHHHHHHHHHHcCC---cEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC
Confidence            4555555     99999999987643   2456666666666788754    6889999999999999999887654432


Q ss_pred             hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcc
Q psy3048         130 PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPE  209 (367)
Q Consensus       130 ~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (367)
                      .- .+..-++ ..|..++  -|.+++..-+|++-.+. +..+......+-|...                          
T Consensus       251 gG-aq~~~gi-~PDlttl--GKiIGGGlP~ga~gGr~-eiM~~~~p~g~vyqaG--------------------------  299 (432)
T COG0001         251 GG-AQGYYGV-EPDLTTL--GKIIGGGLPIGAFGGRA-EIMEQLAPLGPVYQAG--------------------------  299 (432)
T ss_pred             cc-cccccCc-Ccchhhh--hhhhcCCcceeeeccHH-HHHhhhCCCCCccccC--------------------------
Confidence            11 1111223 3465444  58887766677765543 2222111111111111                          


Q ss_pred             hhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HH-HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEE
Q psy3048         210 EFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KG-LQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVC  287 (367)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~  287 (367)
                            +-+            ++...+.+..+.+..+.. ++ ++.+.+....|.+-+.+.+.+. |+.......-+++.
T Consensus       300 ------T~s------------gnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~  360 (432)
T COG0001         300 ------TLS------------GNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFG  360 (432)
T ss_pred             ------CCC------------CcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEE
Confidence                  000            111223444455555443 23 4433333334444444444443 55443322223333


Q ss_pred             EEEcCC------------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         288 FRLKGD------------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       288 f~~~~~------------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +.+...            .+....+.+.|+++| +++.|+.++..      +.+.-.+++|||+.+++++++.+++..
T Consensus       361 i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~G-V~l~ps~~ea~------flS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         361 IFFTEEGVRNYADAKRSDVERFAKFFHHLLNRG-VYLAPSQFEAG------FLSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             EEecCCCCCCHHHHHhhchHHHHHHHHHHHhCC-cccCCccccce------eeecccCHHHHHHHHHHHHHHHHHhhc
Confidence            333221            112235566788888 56776654432      122334799999999999998887653

>KOG1402|consensus

Probab=98.76  E-value=2.4e-06  Score=77.44  Aligned_cols=222  Identities=15%  Similarity=0.167  Sum_probs=124.6

Q ss_pred             eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC----ChhhHHHHHhhcCcEEEEeccccccccc-
Q psy3048          54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALL-  128 (367)
Q Consensus        54 v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~-  128 (367)
                      +..|+.+     |.++|+.++++.-     ...+++.-..-..|++-    -++++.++|.+|+++++.|+.|.+.... 
T Consensus       188 ~~~v~Y~-----d~eale~~l~~~~-----vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTG  257 (427)
T KOG1402|consen  188 VDKVPYG-----DAEALEVALKSPN-----VAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTG  257 (427)
T ss_pred             ceeeccC-----CHHHHHHHhcCCC-----eeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccC
Confidence            5556654     8899999997622     13444444455667763    3789999999999999999998764432 


Q ss_pred             ---ChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhccc
Q psy3048         129 ---LPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKA  204 (367)
Q Consensus       129 ---~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~  204 (367)
                         .-.+..    + +.|++.+.  |.|.+. +..+.+++.+.-.+    .+.     ++..   +  .-|         
T Consensus       258 k~la~d~en----v-~PDivilg--KalSGG~~Pvsavl~~~~im~----~~~-----pgeH---g--sTy---------  307 (427)
T KOG1402|consen  258 KLLACDYEN----V-RPDIVILG--KALSGGVYPVSAVLADDDIML----NIK-----PGEH---G--STY---------  307 (427)
T ss_pred             cEEEeehhh----c-CCCeEEEe--ccccCCeeeeEEEEecHHHHh----ccC-----CCcc---c--ccc---------
Confidence               112211    1 23665543  555433 23344444222111    111     1111   0  000         


Q ss_pred             CCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCC-eE-EeCC-C
Q psy3048         205 LGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDR-FE-LVCP-P  281 (367)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g-~~-~~~~-~  281 (367)
                                               ++   ..++..+++..+.----+++.++...+...|+++|.+++. |. ++.. .
T Consensus       308 -------------------------gg---NpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR  359 (427)
T KOG1402|consen  308 -------------------------GG---NPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR  359 (427)
T ss_pred             -------------------------CC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheee
Confidence                                     01   1234444444443334467788999999999999988752 21 1111 1


Q ss_pred             ---CceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         282 ---SMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       282 ---~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                         -++.+.|.....+ ...-+++-+|.+.|.  +....+ + ..+|+++ ..-.+++|++.-++++++.+
T Consensus       360 GrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~--LAkptH-~-~IiRfaP-PL~I~e~dl~eg~e~i~k~i  425 (427)
T KOG1402|consen  360 GRGLLNAIVINPSKTSGQDAWDVCLALKENGL--LAKPTH-G-NIIRFAP-PLVISEEDLREGIEAIEKTI  425 (427)
T ss_pred             ccceEEEEEeccccccchhHHHHHHccccccc--ccCCCC-C-CeEEecC-CcccCHHHHHHHHHHHHHHh
Confidence               2333344322212 333467767777773  332222 2 3899965 46678999999999998865

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.60  E-value=4.5e-07  Score=85.19  Aligned_cols=120  Identities=17%  Similarity=0.050  Sum_probs=87.0

Q ss_pred             CcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc--CChhhHHHHHhhcCcE
Q psy3048          38 QSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DNLEELGPICQEYNIW  115 (367)
Q Consensus        38 ~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i--~dl~~I~~l~~~~gi~  115 (367)
                      -.|+.+...++..|+++++|-.  ..+-...+++.+|.++++      ++.-++.++. |..  -++++++++||++|++
T Consensus       119 gg~~~v~d~~~~aG~~l~EvG~--tn~t~~~d~~~AIne~ta------~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lp  189 (395)
T COG1921         119 GGAFRVPDIIRLAGAKLVEVGT--TNRTHLKDYELAINENTA------LLLKVHSSNY-GFTGMLSEEELVEIAHEKGLP  189 (395)
T ss_pred             CCCCChhHHHHHcCCEEEEecc--cCcCCHHHHHHHhccCCe------eEEEEeeccc-cccccccHHHHHHHHHHcCCC
Confidence            5889999999999999998863  355688999999999985      5555555543 544  3678899999999999


Q ss_pred             EEEecccccccccCh-hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhh
Q psy3048         116 LHVDAAYAGSALLLP-EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT  171 (367)
Q Consensus       116 l~vD~a~~~~~~~~~-~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~  171 (367)
                      +++|.+.|...-.-+ .......   .+|.+++|++|.|++|. .|++.-+ ++.+.
T Consensus       190 vivD~aSg~~v~~e~~l~~~la~---GaDLV~~SgdKllgGPq-aGii~Gk-KelI~  241 (395)
T COG1921         190 VIVDLASGALVDKEPDLREALAL---GADLVSFSGDKLLGGPQ-AGIIVGK-KELIE  241 (395)
T ss_pred             EEEecCCccccccccchhHHHhc---CCCEEEEecchhcCCCc-cceEech-HHHHH
Confidence            999998765311111 1111122   45999999999999885 6666654 44443

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.57  E-value=8.3e-06  Score=79.92  Aligned_cols=93  Identities=19%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF  145 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~  145 (367)
                      |+++|++++++..   ....+|++.......+...++++|.++|++||+++++|++|.++.... .......++ ..|++
T Consensus       173 d~~~l~~~l~~~~---~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv-~PDi~  247 (431)
T PRK06209        173 DIASLEALFEDHP---GRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGI-VPDLS  247 (431)
T ss_pred             CHHHHHHHHHhCC---CCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCC-Cccee
Confidence            7899999986432   123344443332222333459999999999999999999996543321 001111133 35765


Q ss_pred             eeccccccccCCcceeEEEe
Q psy3048         146 AFNAHKWLLTNHDCSAMWVK  165 (367)
Q Consensus       146 ~~~~hK~l~~p~g~g~l~~~  165 (367)
                      ++  -|.+++....|.+..+
T Consensus       248 t~--gK~lggG~p~~av~~~  265 (431)
T PRK06209        248 CF--GKALGNGFAVSALAGK  265 (431)
T ss_pred             ee--hhhhcCCcccEEEEEH
Confidence            54  6888765446666664

>PRK07046 aminotransferase; Validated

Probab=98.51  E-value=2.1e-05  Score=77.48  Aligned_cols=225  Identities=14%  Similarity=0.035  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |++++++.+...     ...+|++.-.....|.+.|    ++++.++|++||+++++|+.+....-+....  ...++ .
T Consensus       206 d~~~l~~~l~~~-----~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~--~~~gv-~  277 (453)
T PRK07046        206 DLAALEAALADG-----DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT--RAHGL-E  277 (453)
T ss_pred             CHHHHHHHhCCC-----CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh--HHhCC-C
Confidence            889999888421     1345555544445566654    7999999999999999999985100011111  11244 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|.+++  -|.+++...+|++..+++ ... .+..   +-.....   .   .+                    .     
T Consensus       278 PDi~t~--gK~lggG~Pi~av~g~~~-i~~-~~~~---~~~~~~~---~---~~--------------------~-----  319 (453)
T PRK07046        278 PDFLVV--GKPIAGGVPCAVYGFSAE-LAE-RAQA---AKASAPP---G---HS--------------------G-----  319 (453)
T ss_pred             ccceee--hhhhcCCCcceeeeehHH-HHH-HHhh---ccccCCC---C---Cc--------------------e-----
Confidence            588765  688887767888777543 221 1110   0000000   0   00                    0     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCe--EEeCCCCceeEEEEEcCC---
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRF--ELVCPPSMGLVCFRLKGD---  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~--~~~~~~~~~~v~f~~~~~---  293 (367)
                        ...+. .+....+.+..+.|+.+..+   +..++..++.++|.++|+++   -++  .+.....  ++.+.+...   
T Consensus       320 --~~~T~-~gnpl~~aa~~a~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~--~~~i~~~~~~~~  391 (453)
T PRK07046        320 --IGTTL-SANALAMAAMRATLAEVMTE---AAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGA--RVEFQFAPTPPR  391 (453)
T ss_pred             --eCCCC-cccHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCc--EEEEEEeCCCCC
Confidence              00000 11112233334445444332   34556667777777776542   122  2222222  222322110   


Q ss_pred             ----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 ----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 ----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                                ......+...+.++|.+ +.+.   + ..++++..   .+++|||++++++++.++++.
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~-~~~~---~-~~~~~~p~---~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        392 NGAEAAAALDPELEAALHLYLLNRGVL-ITPF---H-NMMLVCPA---TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             CHHHHhcccCHHHHHHHHHHHHHCCCE-Eecc---c-CcEEEeCC---CCHHHHHHHHHHHHHHHHHHh
Confidence                      11234566677888854 4331   2 35677542   589999999999999987653

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.46  E-value=8.4e-06  Score=75.36  Aligned_cols=208  Identities=16%  Similarity=0.062  Sum_probs=131.3

Q ss_pred             EEEEecCCCcccccCC-hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEE
Q psy3048          86 CLVATLGTTGTCAFDN-LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWV  164 (367)
Q Consensus        86 ~vv~~~~~t~~G~i~d-l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~  164 (367)
                      .|.+++..|.+|+--| ...+..     +..+++|.+.+++....|        +++.|++.++.+|.++ |.|.+++++
T Consensus       147 yv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iD--------vsk~dviyagaQKnlG-paGltvvIv  212 (365)
T COG1932         147 YVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPID--------VSKYDVIYAGAQKNLG-PAGLTVVIV  212 (365)
T ss_pred             EEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCC--------hhHcceEEEehhhccC-ccceEEEEE
Confidence            6888988898897633 222221     178999998877766543        3455999999999997 778888888


Q ss_pred             ecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH---H
Q psy3048         165 KNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW---M  241 (367)
Q Consensus       165 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  241 (367)
                      +. ..+.+.-+..-+-++           +|+...-                       .+-+.. ++  ..+.++   .
T Consensus       213 r~-~~l~r~~~~~~P~if-----------~y~~~~~-----------------------~~s~yN-TP--ptfa~y~~~l  254 (365)
T COG1932         213 RP-DLLERAESYTLPSIF-----------DYLTHAD-----------------------NGSMYN-TP--PTFAWYLLGL  254 (365)
T ss_pred             cH-HHHhcccccCCchHh-----------hchhhhc-----------------------cCCccC-Cc--HHHHHHHHHH
Confidence            64 445443222101010           1100000                       000100 11  112222   2


Q ss_pred             HHHHh-hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--C--CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE
Q psy3048         242 TLRSY-GLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--P--PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS  316 (367)
Q Consensus       242 ~l~~~-~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~--~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~  316 (367)
                      .++.+ ...|++.+.++..+.++.|++.+.+. +|....  +  .....|+|.+.. .+..+.+.+.+.++|.++..+  
T Consensus       255 v~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~RS~mnV~f~~~~-~~ld~~fv~eae~~gl~~lkG--  330 (365)
T COG1932         255 VFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKANRSRMNVTFTLVD-AELDKGFVAEAEAAGLIYLKG--  330 (365)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-CccccccchhhccceeEEEEcCc-HHHHHHHHHHHHHcCCceecc--
Confidence            33333 34479999999999999999999886 554322  2  245678888875 667788888899898666543  


Q ss_pred             ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         317 FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       317 ~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++-.+.+|+++ ..-...+|++.|++.++.+.++
T Consensus       331 hr~vgGmRasi-ynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         331 HRSVGGLRASI-YNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             ccCCCceeeee-ecCCCHHHHHHHHHHHHHHHHh
Confidence            33334599975 4556789999999999988664

>KOG1404|consensus

Probab=98.42  E-value=3.1e-05  Score=72.00  Aligned_cols=205  Identities=10%  Similarity=0.038  Sum_probs=117.3

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      +..++.......-|.+.+    +++..++|+++|..++.|+++.++.....-+.+.-.++ ..|+++.  -|.++...-.
T Consensus       213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v-~PDIvTm--AKgiGnG~Pl  289 (442)
T KOG1404|consen  213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGV-VPDIVTM--AKGIGNGFPL  289 (442)
T ss_pred             eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCC-CccHHHH--HhhccCCCcc
Confidence            344555545455567654    68999999999999999999988665432211111122 2355443  5777777778


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |.+++..+  +.+.+.....|.+.-                                             .+........
T Consensus       290 ~AVvtt~E--Ia~v~~~~~~~fnTy---------------------------------------------ggnP~a~avg  322 (442)
T KOG1404|consen  290 GAVVTTPE--IADVLNQKSSHFNTY---------------------------------------------GGNPVACAVG  322 (442)
T ss_pred             eeeecCHH--HHHHHHhcccccccc---------------------------------------------CCCchhHHHH
Confidence            88887432  333332221121111                                             0111111222


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEeCCC-Ccee-EEEEEcC--------CchHHHHHHHHHhccC
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCPP-SMGL-VCFRLKG--------DNDLTNQLYERLMSHK  308 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~-~g~~~~~~~-~~~~-v~f~~~~--------~~~~~~~l~~~L~~~g  308 (367)
                      .+.|..+.   -+++.++..+...||.++|.++ ++.+++++- ..+. +-..+..        .......+.+...+.|
T Consensus       323 ~aVL~Vik---ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~G  399 (442)
T KOG1404|consen  323 LAVLKVIK---EENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELG  399 (442)
T ss_pred             HHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhC
Confidence            33344333   3667788999999999999886 346666542 2221 1122211        1223346667777777


Q ss_pred             cEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         309 QIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       309 ~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      . .+..+...|. .+||++. .-.|++|||.+++..
T Consensus       400 v-lvg~g~i~G~-vfriaPP-lciT~edi~f~~~~~  432 (442)
T KOG1404|consen  400 V-LVGKGGIHGN-VFRIAPP-LCITKEDIDFAVEYF  432 (442)
T ss_pred             e-eeecccccce-EEEecCC-eeccHHHHHHHHHHH
Confidence            4 4555555665 9999764 456799998877765

>KOG0258|consensus

Probab=98.37  E-value=0.00011  Score=68.34  Aligned_cols=78  Identities=23%  Similarity=0.165  Sum_probs=64.7

Q ss_pred             HHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhHHHHHhhcCcEEEEecc
Q psy3048          47 AIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAA  121 (367)
Q Consensus        47 ~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~~l~~~~gi~l~vD~a  121 (367)
                      +..+|...+..-++  .+|.+|+++|++.+++.. ++-.|.+++++.|-|+||++   +.|++|..+|+++|+.++.|+.
T Consensus       178 i~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEV  256 (475)
T KOG0258|consen  178 ISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEV  256 (475)
T ss_pred             HHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHH
Confidence            44566665555554  479999999999999887 67778888888899999998   7899999999999999999997


Q ss_pred             cccc
Q psy3048         122 YAGS  125 (367)
Q Consensus       122 ~~~~  125 (367)
                      |--.
T Consensus       257 YQ~N  260 (475)
T KOG0258|consen  257 YQDN  260 (475)
T ss_pred             HHhh
Confidence            6443

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.31  E-value=0.00022  Score=66.79  Aligned_cols=276  Identities=13%  Similarity=0.068  Sum_probs=143.5

Q ss_pred             HHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEE
Q psy3048           7 AKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCC   86 (367)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~   86 (367)
                      ++.+...-..+..| |.+.   +....+|+-.++--....++.+|++.+.||.+++|. |++.+|+.+.++..   ...+
T Consensus       105 ~~a~~~G~~~~~~P-W~~~---~~vKfLCPvPGYDRHFai~E~~Giemi~VpM~~dGP-DmD~Ve~LV~~D~s---vKGi  176 (425)
T PF12897_consen  105 SRAMLHGVPGSETP-WCKE---EKVKFLCPVPGYDRHFAITEHFGIEMIPVPMTEDGP-DMDMVEELVAEDPS---VKGI  176 (425)
T ss_dssp             HHHHHH--TT-SS--GGGS---S--EEEEEES--HHHHHHHHHCT-EEEEEEEETTEE--HHHHHHHTHTSTT---EEEE
T ss_pred             HHHHhcCCCCCCCC-chhc---cCceEEecCCCchHHHHHHHhhCcEEEecCCCCCCC-CHHHHHHHHhcCCc---cceE
Confidence            33343333333334 6553   478899999898888888999999999999987775 99999999975542   1124


Q ss_pred             EEEecCCCcccccCChhhHHHHH----hhcCcEEEEecccccccccCh--hhh-----hh--hCCCCCcceeeecccccc
Q psy3048          87 LVATLGTTGTCAFDNLEELGPIC----QEYNIWLHVDAAYAGSALLLP--EYA-----HL--KRGLEYVDSFAFNAHKWL  153 (367)
Q Consensus        87 vv~~~~~t~~G~i~dl~~I~~l~----~~~gi~l~vD~a~~~~~~~~~--~~~-----~~--~~~~~~~D~~~~~~hK~l  153 (367)
                      -++-.-+|++|....=+-+.+++    ...+..++.|.||+.+-+..+  ...     ..  ..|-.+--++..|..|.-
T Consensus       177 WcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT  256 (425)
T PF12897_consen  177 WCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT  256 (425)
T ss_dssp             EE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS
T ss_pred             EeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc
Confidence            44555578999996555555554    468999999999998877321  110     00  112112246667789988


Q ss_pred             ccCCcceeEEEecchh--hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccc
Q psy3048         154 LTNHDCSAMWVKNANH--LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS  231 (367)
Q Consensus       154 ~~p~g~g~l~~~~~~~--~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (367)
                      +...|++++.....+.  +.+.+       ..                                           +..+.
T Consensus       257 f~GaGva~~aaS~~Nl~~~~~~~-------~~-------------------------------------------~tIgp  286 (425)
T PF12897_consen  257 FPGAGVAFFAASEANLAWIKKHL-------SV-------------------------------------------QTIGP  286 (425)
T ss_dssp             -TTSS-EEEEE-HHHHHHHHHHH-------HH-------------------------------------------H-S--
T ss_pred             cCCcceeeeecCHHHHHHHHHHh-------cC-------------------------------------------ceeCc
Confidence            8777777777654331  11110       00                                           00011


Q ss_pred             ccccHHHHHHHHHHh-hHH-HHHHHHHHHHHH--------HHHHHHHhc-CCCCeEEeCCC-CceeEEEEEcCCchHHHH
Q psy3048         232 RRFRALKLWMTLRSY-GLK-GLQAYLRKHISL--------AKKFADLVE-KDDRFELVCPP-SMGLVCFRLKGDNDLTNQ  299 (367)
Q Consensus       232 ~~~~~~~~~~~l~~~-~~~-g~~~~~~~~~~l--------a~~l~~~L~-~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~  299 (367)
                      ....+++-   .+.+ ..+ |+++.++++.++        .+.|.++|. .. |+--+..| .-..|+|...+  ..+++
T Consensus       287 dKvNQLRH---vrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GGYFIsld~~~--G~Akr  360 (425)
T PF12897_consen  287 DKVNQLRH---VRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGGYFISLDVLD--GTAKR  360 (425)
T ss_dssp             -HHHHHHH---HHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBSS-EEEEEST--T-HHH
T ss_pred             cHHHHHHH---HHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCceEEEEecCC--ChHHH
Confidence            11222332   3333 245 778777776654        345666666 33 45445544 44566777653  45678


Q ss_pred             HHHHHhccCcEEEEEe--EE-----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         300 LYERLMSHKQIYIIKA--SF-----QGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       300 l~~~L~~~g~~~~~~~--~~-----~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +.+...+.|+. +++.  .+     .....||++++.+  +.+|++.+++.+--+++
T Consensus       361 vV~lakeAGV~-LT~AGAtfPyg~DP~D~nIRiAPS~P--~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  361 VVELAKEAGVA-LTPAGATFPYGKDPRDSNIRIAPSYP--SLEELETAMDVFATCVK  414 (425)
T ss_dssp             HHHHHHHTTEE----TTTTSGGG--TTS-EEEE--SSS---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCce-eCCCCCCCCCCCCCCCCcEEecCCCC--CHHHHHHHHHHHHHHHH
Confidence            88877778844 4431  11     1245899977544  68999999988866544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.28  E-value=0.00012  Score=76.44  Aligned_cols=226  Identities=15%  Similarity=0.088  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHh--hCCCccEEEEEecC-CCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          68 DALLTAVKEDL--AKGLIPCCLVATLG-TTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        68 ~~L~~~l~~~~--~~~~~~~~vv~~~~-~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      +.+++.|++..  ..+.....|++.-. ...-|.+.    =+++|.++|++||+++|+|+.+.|+......+.....++ 
T Consensus       567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv-  645 (817)
T PLN02974        567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC-  645 (817)
T ss_pred             HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC-
Confidence            45666665311  11222334444431 23346553    368999999999999999999987755443332222344 


Q ss_pred             CcceeeeccccccccCC-cceeEEEecchhhhhhccCC-c-cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTD-R-VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~-~-~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      ..|+++++  |.+.+.+ -+|.++.+++ .. ..+... . ..+.++                                 
T Consensus       646 ~PDIi~~g--KgLtgG~~Plaa~l~~~~-I~-~~f~~~~~~~~~~hg---------------------------------  688 (817)
T PLN02974        646 KPDIACYA--KLLTGGLVPLAATLATEE-VF-EAFRGPSKLDALLHG---------------------------------  688 (817)
T ss_pred             CCCEEeec--ccccCCCCccEEEEEcHH-HH-HhhccccccCCcccC---------------------------------
Confidence            46887764  7777663 5777777543 22 222100 0 000000                                 


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHh----cCCCCeEEeCCCCc-eeEEEEEc
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLV----EKDDRFELVCPPSM-GLVCFRLK  291 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~~L----~~~~g~~~~~~~~~-~~v~f~~~  291 (367)
                              .+. .+....+....+.|+.+..++ ++...++..++.+++.+.|    .++|.+.=+  ... .+..+.+.
T Consensus       689 --------~Ty-~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~V--Rg~Gl~~~iel~  757 (817)
T PLN02974        689 --------HSY-TAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERV--VSLGTVLALELD  757 (817)
T ss_pred             --------CCC-CcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE--EeeeeEEEEEEe
Confidence                    000 111122344445566654442 3344455556656555544    344322111  112 22333332


Q ss_pred             CC-------chHHHHHHHHHh-ccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         292 GD-------NDLTNQLYERLM-SHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       292 ~~-------~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      .+       ......+.+++. ++|. ++.+   .+ +.+|+ +..+.+++++++++++.|.+.+
T Consensus       758 ~~~~~~~~~~~~a~~v~~~~~~~~Gl-~~r~---~G-nvi~l-~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        758 AEGSGSGYSSLYARSVVRRLRREDGI-YARP---LG-NVVYL-MCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             cCCcccccchHHHHHHHHHHHHhCCE-EEEe---cC-CEEEE-eCCCCCCHHHHHHHHHHHHHHh
Confidence            21       123457788888 8884 3432   23 57888 4468889999999999998754

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.09  E-value=3.4e-06  Score=78.73  Aligned_cols=131  Identities=15%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             ceEEEecCCcchh------HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc--ccc--
Q psy3048          30 RLVAYASDQSNSS------VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT--CAF--   99 (367)
Q Consensus        30 ~~~v~~s~~~H~s------~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~--G~i--   99 (367)
                      .-.|++|+-.-..      +.+.++..|+++++|-..  -+-.+++++++|.++|.      ++.-.|.+|..  |..  
T Consensus        85 ~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~e~Ta------~ll~Vh~Sn~~i~GFt~~  156 (367)
T PF03841_consen   85 GKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAITENTA------ALLKVHTSNFRIQGFTGE  156 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccc------cccccccccccccccccc
Confidence            3455556544442      344556679999988753  24478999999999984      66666666652  323  


Q ss_pred             CChhhHHHHHhhcCcEEEEecccccccccChhh----hhhhCC-C-CCcceeeeccccccccCCcceeEEEecchhhh
Q psy3048         100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEY----AHLKRG-L-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT  171 (367)
Q Consensus       100 ~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~----~~~~~~-~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~  171 (367)
                      -+++++++++|+||+++++|.+-|... ....+    .+.++. + ..+|.++||+-|.+++|. +|+++-+. +.+.
T Consensus       157 ~~~~el~~la~~~~lp~i~DlgsG~l~-dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk-~lI~  231 (367)
T PF03841_consen  157 VSLEELAELAKEHGLPVIVDLGSGLLV-DLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKK-ELIE  231 (367)
T ss_dssp             ----HHHHHHHHHT--EEEE-TTHHHH-HHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEH-HHHH
T ss_pred             ccHHHHHHHHhhcCCcEEEECCCCCCc-CcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCH-HHHH
Confidence            389999999999999999998765421 11000    111111 2 347999999999999875 68877654 4443

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.04  E-value=0.00059  Score=64.73  Aligned_cols=80  Identities=21%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             EEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      ..|++.-.....|.+    +=+++|.++|++||+++++|+.+.++.....-+.....++ ..|+++++  |.+.+....|
T Consensus       179 aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~p~s  255 (339)
T PF00202_consen  179 AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV-DPDIVTFG--KGLGGGLPIS  255 (339)
T ss_dssp             EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSSEEEEE--GGGGTTSSEE
T ss_pred             EEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc-cCcccccc--cchhhhhhcc
Confidence            355555444444554    3369999999999999999999887643322222222344 46999996  9998887788


Q ss_pred             eEEEecc
Q psy3048         161 AMWVKNA  167 (367)
Q Consensus       161 ~l~~~~~  167 (367)
                      .++.+++
T Consensus       256 av~~~~~  262 (339)
T PF00202_consen  256 AVLGSEE  262 (339)
T ss_dssp             EEEEEHH
T ss_pred             cccccch
Confidence            8888653

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG1401|consensus

Probab=97.96  E-value=0.0032  Score=59.30  Aligned_cols=150  Identities=13%  Similarity=0.007  Sum_probs=83.9

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEE-----ecC--CCCCcCHHHHHHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQL-----RSD--DNGVLRGDALLTAV   74 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v-----~~~--~~~~~d~~~L~~~l   74 (367)
                      +||++||+....+....          +--+|.....-|=-...++...+..-...     .++  ..-.-|+.+|++.+
T Consensus       131 ~ALK~Ark~~~~~~~~~----------~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~  200 (433)
T KOG1401|consen  131 TALKFARKFTGKKHPEK----------KTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLF  200 (433)
T ss_pred             HHHHHHHHhhcccCCcc----------ceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHH
Confidence            68899998887663211          11233334445544444444322211111     111  11122799999999


Q ss_pred             HHHhhCCCccEEEEEecCCCccccc----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc
Q psy3048          75 KEDLAKGLIPCCLVATLGTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH  150 (367)
Q Consensus        75 ~~~~~~~~~~~~vv~~~~~t~~G~i----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h  150 (367)
                      +..+.  . ...|++--..-.-|.+    +-+..|..+|+++|+.++.|+.+.++......+....-++ ..|++++  -
T Consensus       201 ~~h~~--~-IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~-~PDI~t~--a  274 (433)
T KOG1401|consen  201 ESHKG--E-IAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGV-TPDITTV--A  274 (433)
T ss_pred             HhCCC--c-eEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCc-CCcceee--h
Confidence            87652  1 2234444333233333    3367899999999999999999877555443333322222 3476554  5


Q ss_pred             cccccCCcceeEEEecc
Q psy3048         151 KWLLTNHDCSAMWVKNA  167 (367)
Q Consensus       151 K~l~~p~g~g~l~~~~~  167 (367)
                      |.|.+....|+..+++.
T Consensus       275 K~L~gGlPigA~~v~~k  291 (433)
T KOG1401|consen  275 KPLGGGLPIGATGVRDK  291 (433)
T ss_pred             hhccCCceeEEEeehHH
Confidence            77777777888777653

>KOG1412|consensus

Probab=97.84  E-value=0.0015  Score=59.34  Aligned_cols=266  Identities=13%  Similarity=0.172  Sum_probs=151.1

Q ss_pred             CceEEEecCCcchhHHHHHHhCCc-ceEEEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CCh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDV-PVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNL  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~-~v~~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl  102 (367)
                      ++-.||+|..+....+...+-.|. .+...+.  .+...+|.+.+...|+..+..   .++++....+|+||.=   +-.
T Consensus       124 ~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~---si~iLhaCAhNPTGmDPT~EQW  200 (410)
T KOG1412|consen  124 NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEG---SIIILHACAHNPTGMDPTREQW  200 (410)
T ss_pred             ccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCC---cEEeeeccccCCCCCCCCHHHH
Confidence            355699999988888888887884 4554444  256788999999888776532   1233333347899953   567


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccC---hhhhhh---hCCCCCcceeeeccccccccC-Cccee--EEEecchhhhhh
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLL---PEYAHL---KRGLEYVDSFAFNAHKWLLTN-HDCSA--MWVKNANHLTNT  173 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~---~~~~~~---~~~~~~~D~~~~~~hK~l~~p-~g~g~--l~~~~~~~~~~~  173 (367)
                      .+|+++.++.+...+.|-||-|+.-..   |.+..+   ..|+  -=+++-|..|.++.- ...|-  ++.+++......
T Consensus       201 ~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~--e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v  278 (410)
T KOG1412|consen  201 KQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGF--ELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGV  278 (410)
T ss_pred             HHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCC--eEEEEhhhhhhcccccccccceEEEecChhHHHHH
Confidence            899999999999999999986644321   221111   1222  125566678876643 23443  344444333221


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  253 (367)
                      .+.-.--+... .   +..+.| ..+...+.+.+                                 -.++......+..
T Consensus       279 ~SQl~lviR~~-~---SNPPAy-GArIV~kvL~t---------------------------------P~lre~W~~sik~  320 (410)
T KOG1412|consen  279 KSQLTLVIRSN-W---SNPPAY-GARIVHKVLST---------------------------------PELREQWIQSIKT  320 (410)
T ss_pred             HHHHHHHHhhc-c---CCCcch-hhHHHHHHhcC---------------------------------HHHHHHHHHHHHH
Confidence            11100000000 0   111111 00000000000                                 1122333456677


Q ss_pred             HHHHHHHHHHHHHHHhcCC--CCe-EEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKD--DRF-ELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~--~g~-~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      +-.|..+++..|++.|..+  ||- +=+ ..+.++++|.     .++....+.|+++..+|+-.   .|    ||+++ .
T Consensus       321 MssRI~~MR~aLrd~L~aL~TPGtWDHI-~~QiGMFSyT-----GLtp~qV~~li~~h~vyLl~---~G----RInis-G  386 (410)
T KOG1412|consen  321 MSSRIKKMRTALRDHLVALKTPGTWDHI-TQQIGMFSYT-----GLTPAQVDHLIENHKVYLLS---DG----RINIS-G  386 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH-Hhhccceeec-----CCCHHHHHHHHHhceEEEec---CC----cEeee-c
Confidence            7778889999999998775  331 111 1367887773     33567778898888777642   22    45442 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~  352 (367)
                      . +...++++..+|.+.+..+.
T Consensus       387 L-N~~NveyVAkAIde~Vr~~~  407 (410)
T KOG1412|consen  387 L-NMKNVEYVAKAIDETVRAIK  407 (410)
T ss_pred             c-ccccHHHHHHHHHHHHHhhc
Confidence            2 45669999999988877654

>KOG2040|consensus

Probab=97.82  E-value=0.00019  Score=70.70  Aligned_cols=249  Identities=12%  Similarity=0.067  Sum_probs=142.7

Q ss_pred             ceEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.++++...|.-....++.    +|++++..        |+++...-. ++      ...+++.+|.+ .|.+.|..++
T Consensus       205 rkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~--------~~~~~~~s~-~~------v~gvlvQYP~t-~G~i~d~~el  268 (1001)
T KOG2040|consen  205 RKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS--------DIKEADYSS-KD------VSGVLVQYPDT-EGSVLDFDEL  268 (1001)
T ss_pred             cceEEecCCCCcchhhhhhccccccceeEEec--------CHHHhhccc-cc------eeEEEEEcCCC-CCcccCHHHH
Confidence            34467788999988777653    34443322        222221111 11      23688888877 6999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCccee-----EEEecchhhhhhccCCccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSA-----MWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~-----l~~~~~~~~~~~~~~~~~y  180 (367)
                      ++.+|+.|..+++-.-.-+.-++-++..+      .+|+.+.+++.+ +.|.|-|.     +.++  +.+.+.       
T Consensus       269 ~~~a~~~~s~vv~atDLLaLtiLrpPgef------GaDIavGSsQRF-GVPlGYGGPHAaFfAv~--~~l~R~-------  332 (1001)
T KOG2040|consen  269 VELAHANGSLVVMATDLLALTILRPPGEF------GADIAVGSSQRF-GVPLGYGGPHAAFFAVS--ESLVRM-------  332 (1001)
T ss_pred             HHHhhccCceEEEeehhhHHHccCChhhc------Cceeeecccccc-CccccCCCchHHHHHHH--HHHHhh-------
Confidence            99999999876654322111222222222      359999999885 45655443     2221  112221       


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcc-------ccccc----cccccccHHHHHHH-----HH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI-------QHWQT----PLSRRFRALKLWMT-----LR  244 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~-----l~  244 (367)
                                                +|++.+..+.+..+..+       ++.+.    +.++-..+-++.+-     .-
T Consensus       333 --------------------------mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyai  386 (1001)
T KOG2040|consen  333 --------------------------MPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAI  386 (1001)
T ss_pred             --------------------------CCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhh
Confidence                                      22222222222211100       00000    00110111111111     11


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEE
Q psy3048         245 SYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLR  324 (367)
Q Consensus       245 ~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lR  324 (367)
                      .+|.+|++++.++....+-+|...|+.. |-++.+.+.+-.+.+++.+   ..+++.++-.++++- +  ..+. .+.+-
T Consensus       387 YHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~---s~~~~l~rA~~~~iN-l--r~~e-d~tig  458 (1001)
T KOG2040|consen  387 YHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGC---SAEEVLDRAAKRQIN-L--RLVE-DGTIG  458 (1001)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccccccceEEEEecC---cHHHHHHHHHhhcCc-e--EEee-cCceE
Confidence            3599999999999999999999999986 6788877777777788764   256777777666632 1  1112 23455


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q psy3048         325 FVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~  345 (367)
                      +++ .-.++++|+|.++..+.
T Consensus       459 vsl-DETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  459 VSL-DETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             Eee-cccccHHHHHHHHHHHc
Confidence            554 56678999999999885

>KOG1405|consensus

Probab=97.66  E-value=0.004  Score=57.52  Aligned_cols=220  Identities=11%  Similarity=0.069  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccc----cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~----i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++++|+.|.+..++......+++.-..+.-|.    -+=+..+.++|++||+.++||+.|.++.....-+.....+++.
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~  333 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS  333 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence            567788888776644322233444444444443    3557999999999999999999997765433222221223322


Q ss_pred             -cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 -VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 -~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                       .|++++| .|+..     |. ++.+.+..     ...+|.              .-..|+|                  
T Consensus       334 PpD~vTFS-KK~q~-----gG-ffh~~~fr-----pn~pYr--------------ifNTWmG------------------  369 (484)
T KOG1405|consen  334 PPDVVTFS-KKFQT-----GG-FFHDEEFR-----PNEPYR--------------IFNTWMG------------------  369 (484)
T ss_pred             Cccceehh-hhhhc-----Cc-cccCcccC-----CCchHH--------------HhhhhcC------------------
Confidence             4666653 34332     22 22222211     112221              0112322                  


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCC-CceeEEEEEcCCch
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPP-SMGLVCFRLKGDND  295 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~-~~~~v~f~~~~~~~  295 (367)
                                 -.+..+-+-..++.+..   +++.++.....++|..+|.++    ||. +-.-. .-+.+++.++. ..
T Consensus       370 -----------dP~k~lll~~vv~~I~~---~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~-~~~~RGrGTF~a~d~ps-~~  433 (484)
T KOG1405|consen  370 -----------DPSKNLLLEEVVQEIKR---EDLLNNVAHVGKALLKGLLELQAKYPGK-INNLRGRGTFIAWDCPS-GS  433 (484)
T ss_pred             -----------ChHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHhCchh-hhcccccceEEEEeCCC-hH
Confidence                       11223333444444444   344556677777777777553    331 11111 33455666654 44


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .-+.+...+..+|. .+++   .|...+|+-++ .-.++...+-+++.+.++++.
T Consensus       434 ~Rdk~i~~~~~nGv-~~GG---Cg~~siRfRPs-Lvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  434 IRDKLILIARLNGV-NLGG---CGDKSIRFRPS-LVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             HHHHHHHHHHHcCc-eecc---cccceeeeccc-eeehhhhHHHHHHHHHHHhcc
Confidence            45677777888884 3321   23446777553 444688899999999988754

>KOG2790|consensus

Probab=97.62  E-value=0.0038  Score=56.00  Aligned_cols=258  Identities=12%  Similarity=0.029  Sum_probs=145.2

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC-ChhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD-NLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~-dl~~I~~  107 (367)
                      .|++..-+..+..++-++.-...+..+..+   +-..|++.++..  ++.      ..|-.+...|..|+-. ++.    
T Consensus       102 YiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~~--~da------~yvyyCaNETVHGVEf~~~P----  169 (370)
T KOG2790|consen  102 YVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWELN--PDA------SYVYYCANETVHGVEFDFIP----  169 (370)
T ss_pred             eEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhcccC--CCc------cEEEEecCceeeceecCCCC----
Confidence            344444555556666555433333333311   123455555432  121      3677777788888753 222    


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +-.-+|..++.|-+.-...-+.        +++.-+++.++.+|..+ |.|.-++++|+. .+.+.....|.-+.-... 
T Consensus       170 ~~~~~~~vlVaDmSSnflSrpv--------Dvsk~gvi~aGAQKN~G-~aG~Tvvivr~d-llg~~~~~tP~v~dyk~~-  238 (370)
T KOG2790|consen  170 VNDPKGAVLVADMSSNFLSRPV--------DVSKFGVIFAGAQKNVG-PAGVTVVIVRKD-LLGNALDITPSVLDYKIM-  238 (370)
T ss_pred             CCCCCCceEEEecccchhcCCc--------cchhcceEEeccccccC-ccccEEEEEehh-hhcccccCCccccceeee-
Confidence            2234678888896643332222        23444889999999987 778888888753 444443333322211110 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~l~  266 (367)
                        ....+         .|-+|+                       -|....+...++.+. ..|++++.+...+.++.+.
T Consensus       239 --~~NnS---------lyNTpP-----------------------~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllY  284 (370)
T KOG2790|consen  239 --DKNNS---------LYNTPP-----------------------CFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLY  284 (370)
T ss_pred             --ccccc---------cccCCC-----------------------eeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              00000         011110                       011122233344433 3458888888889999999


Q ss_pred             HHhcCCCCeEEeC-CC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVC-PP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~-~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|.+..||.... +|   ....|.|++.. +++..++.+.-.+++-+.+  -.++.-+.+|.|+ .--.+-++++++++
T Consensus       285 d~iD~s~gfy~cpVe~~~RS~MNV~Fri~~-d~Le~eFLkeA~~~~mv~L--KGhRSVGGiRASl-YNAisv~~~q~L~~  360 (370)
T KOG2790|consen  285 DAIDNSNGFYRCPVEPSVRSRMNVPFRIEK-DELEAEFLKEAAKEHMVQL--KGHRSVGGIRASL-YNAISVEEVQKLAA  360 (370)
T ss_pred             HHHHhcCCeEEcccchhhhhhcccceeecc-hHHHHHHHHHHHHhhhhcc--ccccccccchhhh-hccccHHHHHHHHH
Confidence            9999988887543 33   34678899975 5666677776666663322  2223345689865 33456899999999


Q ss_pred             HHHHHHHH
Q psy3048         343 EISHQSSE  350 (367)
Q Consensus       343 ~l~~~~~~  350 (367)
                      -++++.+.
T Consensus       361 ~m~~F~k~  368 (370)
T KOG2790|consen  361 FMKEFQKK  368 (370)
T ss_pred             HHHHHHHh
Confidence            99998764

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=97.55  E-value=0.00056  Score=63.65  Aligned_cols=132  Identities=12%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             CceEEEecCCcchhHHHHHHh----------CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecC--CC--
Q psy3048          29 SRLVAYASDQSNSSVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLG--TT--   94 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~----------~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~--~t--   94 (367)
                      ++.-+.++..-+-++.+.+.+          .|++.++|++.+++.+|.+.+++++++.++      +|.+.=.  .+  
T Consensus        96 GD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk------~v~IQRSrGYs~R  169 (403)
T PF06838_consen   96 GDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPNTK------MVLIQRSRGYSWR  169 (403)
T ss_dssp             T-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEE------EEEEE-S-TTSSS
T ss_pred             CCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccCce------EEEEecCCCCCCC
Confidence            456666666666667766643          467889999999999999999999998774      5555421  11  


Q ss_pred             cccccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhh
Q psy3048          95 GTCAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLT  171 (367)
Q Consensus        95 ~~G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~  171 (367)
                      +.=.+++|+++.+++|+  .++.++||.|||-+.-..+   +..-|   +|.+..|.=|..++. .-+|.-++.+.+.++
T Consensus       170 ~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~E---P~~vG---ADl~aGSLIKNpGGgiAptGGYIaGr~~lVe  243 (403)
T PF06838_consen  170 PSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQE---PTEVG---ADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE  243 (403)
T ss_dssp             ----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GGGGT----SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccC---ccccc---hhheeccceeCCCCCccCcCCEEechHHHHH
Confidence            11134677888888776  5789999999987654332   22223   599999999998775 234444444445454


Q ss_pred             h
Q psy3048         172 N  172 (367)
Q Consensus       172 ~  172 (367)
                      +
T Consensus       244 ~  244 (403)
T PF06838_consen  244 R  244 (403)
T ss_dssp             H
T ss_pred             H
Confidence            3

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=95.71  E-value=0.046  Score=49.67  Aligned_cols=114  Identities=14%  Similarity=0.071  Sum_probs=77.6

Q ss_pred             ceEEEecCCcchhHHHHHHh----------CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecC----CCc
Q psy3048          30 RLVAYASDQSNSSVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLG----TTG   95 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----------~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~----~t~   95 (367)
                      +.-++++..-+-.+++.+.+          +|++.+.|++..+|.+|.+.+++++.+.++      +|.+.-.    .-+
T Consensus       108 Dell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tk------li~IQRS~GY~~Rp  181 (416)
T COG4100         108 DELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISDRTK------LIGIQRSKGYAWRP  181 (416)
T ss_pred             CeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCccce------EEEEEeccCcCCCC
Confidence            55566665555566665433          466778888888999999999999999885      4444321    112


Q ss_pred             ccccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc
Q psy3048          96 TCAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        96 ~G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                      .=.+++|+++..+.|+  -++.++||.|||-+.--.   .+..-   .+|.+..|.-|.-++
T Consensus       182 S~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~---EPt~v---GaDliAGSLIKNpGG  237 (416)
T COG4100         182 SLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK---EPTHV---GADLIAGSLIKNPGG  237 (416)
T ss_pred             cccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc---Ccccc---chhhhccceeeCCCC
Confidence            2345788888888886  468999999998654322   22112   359999999997443

>KOG1411|consensus

Probab=95.48  E-value=0.18  Score=46.90  Aligned_cols=258  Identities=18%  Similarity=0.185  Sum_probs=143.0

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      +.-.||++..+.--..+.-...|+.+.++...  .+..+|.+.+-+.+.+....   ..+++--..+|+||+=   +..+
T Consensus       145 ~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~g---s~ilLhaCaHNPTGvDPt~eqw~  221 (427)
T KOG1411|consen  145 PSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEG---SIILLHACAHNPTGVDPTKEQWE  221 (427)
T ss_pred             cccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCC---cEEEeehhhcCCCCCCccHHHHH
Confidence            34566777666555555555567877666552  46788888877777665432   2445555567889863   6789


Q ss_pred             hHHHHHhhcCcEEEEeccccccccc---Chhhhhh---hCCCCCcceeeeccccccccC-Cccee--EEEecchhhhhhc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALL---LPEYAHL---KRGLEYVDSFAFNAHKWLLTN-HDCSA--MWVKNANHLTNTF  174 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~---~~~~~~~---~~~~~~~D~~~~~~hK~l~~p-~g~g~--l~~~~~~~~~~~~  174 (367)
                      +|.++.++.+..-++|-|+-++..-   -|.+..+   ..|.  --.++-|.-|.++.- -..|.  +++.+.+...+.-
T Consensus       222 ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~--~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~  299 (427)
T KOG1411|consen  222 KISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGH--EILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVE  299 (427)
T ss_pred             HHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCC--ceEeehhhhhhcchhhhccceeEEEecCHHHHHHHH
Confidence            9999999999999999998765432   1221111   1111  124555667776643 22333  4554444332221


Q ss_pred             c-----CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH
Q psy3048         175 F-----TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK  249 (367)
Q Consensus       175 ~-----~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  249 (367)
                      +     ..+.|-.+.         -                       -|+.|+.   . .-........|       ..
T Consensus       300 SQlk~liRpmYSnPP---------~-----------------------hGArIv~---~-Il~d~~l~~~W-------~~  336 (427)
T KOG1411|consen  300 SQLKILIRPMYSNPP---------L-----------------------HGARIVA---T-ILSDPDLKNQW-------LG  336 (427)
T ss_pred             HHHHHHhcccccCCC---------c-----------------------cchhhhh---h-ccCChHHHHHH-------HH
Confidence            1     112221110         0                       0111100   0 00001112222       23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEE-eC--CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEE
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFEL-VC--PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFV  326 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~-~~--~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~  326 (367)
                      .+.-...|...+.+.+.+.|... |-.. +.  ..+.++++|.     ..+.+..+.|..+..+|++.     .  -|||
T Consensus       337 evk~MadRi~~mR~~L~d~L~~~-gs~~~W~hI~~QIGMF~fT-----gl~peQv~~l~ke~~iYmT~-----d--GRiS  403 (427)
T KOG1411|consen  337 EVKGMADRIISMRQQLFDALEKE-GSPGNWSHITKQIGMFCFT-----GLNPEQVDWLTKEYHIYLTK-----D--GRIS  403 (427)
T ss_pred             HHHHHHHhhhhhHHHHhHHhhcC-CCCccHHHHHHhhheeeec-----CCCHHHHHHHHhhheeeecc-----C--ceEe
Confidence            34555667888899999998774 2211 00  1377888884     23567778888888777752     1  2665


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +..  .+...+.++.++|.++.+
T Consensus       404 ~aG--~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  404 MAG--LSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             ecc--ccccCCcccchhhHhHhc
Confidence            532  244568888888887744

>KOG1403|consensus

Probab=95.23  E-value=0.42  Score=43.64  Aligned_cols=237  Identities=13%  Similarity=0.083  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhh-hhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~-~~~~~~~~~  141 (367)
                      -+.+++.+++...++......+...-.+--|++-|    +.++++-.|.+|-.++.|+.+-++......+ .+..-++ -
T Consensus       193 ad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~f-i  271 (452)
T KOG1403|consen  193 ADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNF-I  271 (452)
T ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhcc-c
Confidence            35567777665544433333333333444566644    5678888899999999999987665443222 1111111 1


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|+++..  |-++-....+.+....  .+.+.+.. .-.|+..                                     
T Consensus       272 PDIVtmg--KpmGNGhPVa~Vattk--eIA~Af~atgv~YFNT-------------------------------------  310 (452)
T KOG1403|consen  272 PDIVTMG--KPMGNGHPVAAVATTK--EIAQAFHATGVEYFNT-------------------------------------  310 (452)
T ss_pred             cchheec--ccCCCCCeeeEEeccH--HHHHHhccccceehhc-------------------------------------
Confidence            2544432  2222222233444422  23333322 1222211                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeCCC-CceeE-EEEEcCC----
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVCPP-SMGLV-CFRLKGD----  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~~~-~~~~v-~f~~~~~----  293 (367)
                              -+++........+.++....   +++.++..++.++|...|+++. ..+++++- ..+.+ -+.+..+    
T Consensus       311 --------yGGnPVsCAv~laVm~v~e~---E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tR  379 (452)
T KOG1403|consen  311 --------YGGNPVSCAVGLAVMRVCED---ENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTR  379 (452)
T ss_pred             --------cCCCchhHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccC
Confidence                    11222223333444554444   4455677788888877776642 35666542 22222 1222111    


Q ss_pred             ---chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy3048         294 ---NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSS  358 (367)
Q Consensus       294 ---~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~~  358 (367)
                         ...+..+..+|.+...+.+.. .-.+++.++|-+...+ ++++++.++..|.+++.-+++...+.
T Consensus       380 tP~tk~A~~~v~rlke~y~VLlsa-DGPh~NilKiKPPmCF-neena~e~v~~ld~iLT~mee~~~s~  445 (452)
T KOG1403|consen  380 TPDTKEAHWVVNRLKELYRVLLSA-DGPHRNILKIKPPMCF-NEENADEFVLGLDEILTVMEERLASA  445 (452)
T ss_pred             CCcHHHHHHHHHHHHHhhhEEEec-CCCCCceeecCCCccc-ChhhHHHHHHHHHHHHHHHHHHHhhh
Confidence               223446667788777555542 2234568888665555 48999999999999988666555443

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=93.61  E-value=0.84  Score=42.68  Aligned_cols=79  Identities=13%  Similarity=-0.013  Sum_probs=44.8

Q ss_pred             cEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccc-ccCCcceeE
Q psy3048          84 PCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWL-LTNHDCSAM  162 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l-~~p~g~g~l  162 (367)
                      +.+=++|+|+||.|.+..     .+++.-+..++.|-||-...+..-..      ..+-|+|-++..|.= -++...|+.
T Consensus       138 ~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~------~aD~DiMLFT~SK~TGHAGSR~GWA  206 (363)
T PF04864_consen  138 PYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITA------PADHDIMLFTLSKLTGHAGSRFGWA  206 (363)
T ss_dssp             GEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-------B--SEEEEEHHHHCS-GGG-EEEE
T ss_pred             CeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCC------CCCCceEEEEEecccCcccccccee
Confidence            567788999999998731     12355667789999987654422111      112389999998863 334678999


Q ss_pred             EEecchhhhhh
Q psy3048         163 WVKNANHLTNT  173 (367)
Q Consensus       163 ~~~~~~~~~~~  173 (367)
                      ++++++..+++
T Consensus       207 lVKD~~Va~kM  217 (363)
T PF04864_consen  207 LVKDEEVAKKM  217 (363)
T ss_dssp             EES-HHHHHHH
T ss_pred             eecCHHHHHHH
Confidence            99988766554

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		2e-86
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		9e-86
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		6e-04
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		4e-85
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		6e-04
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		1e-84
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		3e-81
2jis_A	515	Human Cysteine Sulfinic Acid Decarboxylase (Csad) I		3e-27
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		2e-23
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		3e-23
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		3e-22
2qma_A	497	Crystal Structure Of Glutamate Decarboxylase Domain		2e-18
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		2e-07

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/347 (45%), Positives = 213/347 (61%), Gaps = 35/347 (10%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K +  L +A P +++  +  +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
               +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI---QHWQTPLSRRFRAL 237
           LKH+                                  G G+I   +HWQ PL RRFR+L
Sbjct: 333 LKHSHQ--------------------------------GSGLITDYRHWQLPLGRRFRSL 360
Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLT 297
           K+W   R YG+KGLQAY+RKH+ L+ +F   V +D RFE+    ++GLVCFRLKG + L 
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN 420
Query: 298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
             L ER+ S ++I+++    +G+  LRF + S +     V  AW  I
Sbjct: 421 EALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  313 bits (802), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 159/353 (45%), Positives = 217/353 (61%), Gaps = 33/353 (9%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K I  L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC + +IWLHVDA
Sbjct: 213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D  Y
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332
Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           LKH+  D+ + T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361
Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+ +F  LV +D RFE+     +GLVCFRLKG N +  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNE 421
Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            L +R+ S K+I+++    + +  LRF + S       V  AW  I   ++++
Sbjct: 422 ALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADV 474

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           +  +M+WLGK L LP+ FLN   G GGGVIQ
Sbjct: 115 ETVMMDWLGKMLELPKAFLNEKAGEGGGVIQ 145

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  311 bits (797), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/353 (44%), Positives = 216/353 (61%), Gaps = 33/353 (9%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K I  L +A P +++  I  +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC + +IWLHVDA
Sbjct: 213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN H WLL N DCSAMWVK    LT  F  D  Y
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332
Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
           LKH+  D+ + T   DY                            +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361
Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
           +W   R YG+KGLQAY+RKH+ L+ +F  LV +D RFE+     +GLVCFRLKG N +  
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNE 421
Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            L +R+ S K+I+++    + +  LRF + S       V  AW  I   ++++
Sbjct: 422 ALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADV 474

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           +  +M+WLGK L LP+ FLN   G GGGVIQ
Sbjct: 115 ETVMMDWLGKMLELPKAFLNEKAGEGGGVIQ 145

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/352 (43%), Positives = 217/352 (61%), Gaps = 32/352 (9%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++L AK KK+ ++    P   E+ I  +LV Y SDQ++SSVE++ ++G V +R ++S+
Sbjct: 153 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE 212
Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
            N  +RG AL  A+++D+A+GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct: 213 -NHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PEY HL +G+E  DSF FN H W+L N DCSAMW+K+ + + N F  D +Y
Sbjct: 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 331
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH    M   +PDY                            +HWQ PL RRFRALKLW
Sbjct: 332 LKHD---MQGSAPDY----------------------------RHWQIPLGRRFRALKLW 360
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++ LQA++R+H + AK+F DL   D RFEL    +MGLVCFRLKG N+    L
Sbjct: 361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 420
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN 352
            +R+     I+++ A  +   FLR  + S  T   D+ ++W E+S  + EM 
Sbjct: 421 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score =  298 bits (763), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/344 (42%), Positives = 212/344 (61%), Gaps = 31/344 (9%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++LAA++ KIL++ ++ P   E+ + +RLVAYASDQ++SSVEK+ +I  V ++ L  D
Sbjct: 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD 218
Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           DN  LRG+AL  A++ED  +GL+P  + ATLGTTG CAFD L ELGPIC    +WLH+DA
Sbjct: 219 DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDA 278
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG+A L PE+    +G+EY DSF FN  KW++ + DC+  WVK+   L  TF  + +Y
Sbjct: 279 AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           L+H ++                   G+  +F+            HWQ PLSRRFR++KLW
Sbjct: 339 LRHANS-------------------GVATDFM------------HWQIPLSRRFRSVKLW 367
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             +RS+G+K LQA++R    +AK F  LV  D  FE+     +GLV FRLKG N LT  +
Sbjct: 368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENV 427
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
            + +    ++++I A+ Q +  +RF VTS  T + D+   WN I
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLI 471

>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 49/341 (14%)
Query: 31  LVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL 87
           L  + S + + S++K A    +G   VR +++D+ G +  + L   +    A+G +P  +
Sbjct: 204 LALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
Query: 88  VATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAF 147
            AT GTT   AFD LE +  +CQ + +WLHVDAA+ GS LL   + HL  G++  DS A+
Sbjct: 264 SATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAW 323
Query: 148 NAHKWLLTNHDCSAMWVKN-ANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALG 206
           N HK L     CSA+ +++ +N L     +   YL   D                     
Sbjct: 324 NPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQD--------------------- 362
Query: 207 LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA 266
              +F + +   G  V+Q       RR   LKLW+  ++ G +GL+  + +   LA+   
Sbjct: 363 ---KFYDVALDTGDKVVQ-----CGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLV 414
Query: 267 DLVEKDDRFELVCPPSMGLVCF-----RLKGDND----------LTNQLYERLMSHKQIY 311
           + ++K + FELV  P    VCF      L+G  +          +   L ER++    + 
Sbjct: 415 EEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMM 474
Query: 312 IIKASFQGRP-FLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
           I       R  F R VV +      D+ F  NE+     ++
Sbjct: 475 IGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 159/376 (42%), Gaps = 61/376 (16%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
           M SI+AA+ K   ++ + G          +LV + S+QS+ S++K+      G   V  +
Sbjct: 165 MYSIMAARYKYFPEVKTKGMAAV-----PKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 219
Query: 58  RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
           + ++ G +        + E   KG +P  + AT GTT   AFD ++E+  IC++YN+WLH
Sbjct: 220 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 279
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
           VDAA+ G  L+  ++ H   G+E  +S  +N H  +     CSA+ VK    L       
Sbjct: 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC---- 335
Query: 178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL 237
                      N     Y         L  P++  + S   G   IQ       R     
Sbjct: 336 -----------NQMCAGY---------LFQPDKQYDVSYDTGDKAIQ-----CGRHVDIF 370
Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF-----RL 290
           K W+  ++ G  G +  + K + LA+     ++  + FE+V    P    VCF      L
Sbjct: 371 KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430
Query: 291 KGDNDLTNQLYERLMSHKQIYIIKASF------------QGRP--FLRFVVTSPETNQCD 336
           +G  D + Q  E+L  HK    IKA              QG    F R V+++P   Q D
Sbjct: 431 RGVPD-SPQRREKL--HKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSD 487
Query: 337 VAFAWNEISHQSSEMN 352
           + F   EI     +++
Sbjct: 488 IDFLIEEIERLGQDLH 503

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 157/379 (41%), Gaps = 69/379 (18%)
Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
           M SI+AA+ K   ++ + G          +LV + S+QS+ S++K+      G   V  +
Sbjct: 168 MYSIMAARYKYFPEVKTKGMAAV-----PKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 222
Query: 58  RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
           + ++ G +        + E   KG +P  + AT GTT   AFD ++E+  IC++YN+WLH
Sbjct: 223 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
           VDAA+ G  L+  ++ H   G+E  +S  +N H  +     CSA+ VK    L       
Sbjct: 283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMH 342
Query: 178 RVYL----KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
             YL    KH D   +T                            G   IQ       R 
Sbjct: 343 ASYLFQQDKHYDVSYDT----------------------------GDKAIQ-----CGRH 369
Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF--- 288
               K W+  ++ G  G +  + K + LA+     ++  + FE+V    P    VCF   
Sbjct: 370 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYI 429
Query: 289 --RLKGDNDLTNQLYERLMSHKQIYIIKASF------------QGRP--FLRFVVTSPET 332
              L+G  D + Q  E+L  HK    IKA              QG    F R V+++P  
Sbjct: 430 PQSLRGVPD-SPQRREKL--HKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAA 486
Query: 333 NQCDVAFAWNEISHQSSEM 351
            Q D+ F   EI     ++
Sbjct: 487 TQSDIDFLIEEIERLGQDL 505

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 148/353 (41%), Gaps = 60/353 (16%)
Query: 20  PTVSENDIKS--RLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAV 74
           P V E  + +  RL+A+ S+ S+ S++K A    IG   V  ++ D+ G +    L   +
Sbjct: 173 PEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRI 232
Query: 75  KEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH 134
            E   KG +P  + AT GTT   AFD L  +  IC++Y IW+HVDAA+ G  L+  ++  
Sbjct: 233 LEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKW 292
Query: 135 LKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL----KHTDAPMNT 190
              G+E  +S  +N H  +     CSA+ V+    + N       YL    KH D   +T
Sbjct: 293 KLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDT 352
Query: 191 QSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG 250
                             ++ L C                 R     KLW+  R+ G  G
Sbjct: 353 G-----------------DKALQC----------------GRHVDVFKLWLMWRAKGTTG 379
Query: 251 LQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF-------RLKGDND------ 295
            +A++ K + LA+   ++++  + +E+V    P    VCF       R   DN+      
Sbjct: 380 FEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERMSRL 439
Query: 296 --LTNQLYERLMSHKQIYIIKASFQGRP-FLRFVVTSPETNQCDVAFAWNEIS 345
             +   +  R+M +    +       +  F R V+++P     D+ F   EI 
Sbjct: 440 SKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIE 492

>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 139/312 (44%), Gaps = 41/312 (13%)
Query: 26  DIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGL 82
           D   +L    S +S+ +V+KSA    +G+  V  + ++ +G      L   + +  A+GL
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGL 257
Query: 83  IPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 142
           IP  +V T GTT   A D+L+ +     +++ W HVD AY G AL+L  +    +G+E  
Sbjct: 258 IPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVERA 316
Query: 143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLG 202
            S + + HK       C A+ V + ++        +  L H D  +N +  +  + N + 
Sbjct: 317 HSISVDFHKLFYQTISCGALLVNDKSNF-------KFLLHHADY-LNREHDE--LPNLVD 366
Query: 203 KALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA 262
           K++                         ++RF ALK++ T ++ G K L       ++  
Sbjct: 367 KSIA-----------------------TTKRFDALKVFXTXQNVGPKALGDXYDHLLAQT 403
Query: 263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLMSHKQIYIIKASFQ 318
            + AD +  +D+FEL+  PS+  V FR   +    ++L   L    ++     + +    
Sbjct: 404 LEVADXIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVD 463
Query: 319 GRPFLRFVVTSP 330
           G+  L+F + +P
Sbjct: 464 GKTALKFTILNP 475

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 87  LVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA 146
           ++   GTT     DN+EEL  I +E NI++HVDAA+ G  +   +  + K+G+ Y   F+
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS 234
Query: 147 FNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH--TDAPMNTQSPDYTVM 198
                  +  H      + +   L    F D  Y ++   DAP  T++   T++
Sbjct: 235 LGVDSITIDPHKXGHCPIPSGGIL----FKDIGYKRYLDVDAPYLTETRQATIL 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-150
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	2e-04
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-147
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-05
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-146
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	5e-06
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	1e-132
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	1e-130
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-127
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	2e-35
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	5e-35
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	3e-34
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	1e-33
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	2e-26
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	2e-22
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	2e-09
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	2e-09
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	1e-05
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	5e-04

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  430 bits (1108), Expect = e-150
 Identities = 145/351 (41%), Positives = 213/351 (60%), Gaps = 31/351 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++LAA++ KIL++ ++ P   E+ + +RLVAYASDQ++SSVEK+ +I  V ++ L  D
Sbjct: 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD 218

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           DN  LRG+AL  A++ED  +GL+P  + ATLGTTG CAFD L ELGPIC    +WLH+DA
Sbjct: 219 DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDA 278

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAG+A L PE+    +G+EY DSF FN  KW++ + DC+  WVK+   L  TF  + +Y
Sbjct: 279 AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           L+H ++     + D+                             HWQ PLSRRFR++KLW
Sbjct: 339 LRHANS---GVATDF----------------------------MHWQIPLSRRFRSVKLW 367

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             +RS+G+K LQA++R    +AK F  LV  D  FE+     +GLV FRLKG N LT  +
Sbjct: 368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENV 427

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            + +    ++++I A+ Q +  +RF VTS  T + D+   WN I   ++ +
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 197 VMNWLGKALGLPEEFLNCSK-GPGGGVIQ 224
           VM+WL K LGLPE FL+      GGGV+Q
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQ 151

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  422 bits (1088), Expect = e-147
 Identities = 158/351 (45%), Positives = 215/351 (61%), Gaps = 29/351 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K +  L +A P +++  +  +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
               +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH+    +    DY                             HWQ PL RRFR+LK+W
Sbjct: 333 LKHSHQG-SGLITDYR----------------------------HWQLPLGRRFRSLKMW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
              R YG+KGLQAY+RKH+ L+ +F   V +D RFE+    ++GLVCFRLKG + L   L
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEAL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            ER+ S ++I+++    +G+  LRF + S +     V  AW  I   ++E+
Sbjct: 424 LERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           +M+WLGK L LPE FL    G GGGVIQ
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  421 bits (1084), Expect = e-146
 Identities = 153/351 (43%), Positives = 216/351 (61%), Gaps = 32/351 (9%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++L AK KK+ ++    P   E+ I  +LV Y SDQ++SSVE++ ++G V +R ++  
Sbjct: 153 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ-S 211

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           +N  +RG AL  A+++D+A+GLIP   V TLGTT +CAFD L+E GP+  ++N+W+HVDA
Sbjct: 212 ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PEY HL +G+E  DSF FN HKW+L N DCSAMW+K+ + + N F  D +Y
Sbjct: 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 331

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH        +PDY                            +HWQ PL RRFRALKLW
Sbjct: 332 LKHDMQ---GSAPDY----------------------------RHWQIPLGRRFRALKLW 360

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
             LR YG++ LQA++R+H + AK+F DL   D RFEL    +MGLVCFRLKG N+    L
Sbjct: 361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 420

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            +R+     I+++ A  +   FLR  + S  T   D+ ++W E+S  + EM
Sbjct: 421 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
           +M+WLGK L LP EFL CS G GGGVIQ
Sbjct: 118 MMDWLGKMLELPAEFLACSGGKGGGVIQ 145

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  385 bits (991), Expect = e-132
 Identities = 78/359 (21%), Positives = 153/359 (42%), Gaps = 42/359 (11%)

Query: 1   MVSILAAKRKKILDLTSAGP-TVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQ 56
            + ++ A+      L+      +   D   +L    S +S+ +V+KSA    +G+  V  
Sbjct: 172 QMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMT 231

Query: 57  LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWL 116
           + ++ +G +    L   + +  A+GLIP  +V T GTT   A D+L+ +  +  ++++W+
Sbjct: 232 VDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWM 291

Query: 117 HVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT 176
           HVD AY G AL+L  +    +G+E   S + + HK       C A+ V + ++       
Sbjct: 292 HVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLH 349

Query: 177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA 236
              YL         + P+                                    ++RF A
Sbjct: 350 HADYLNREH----DELPNLV----------------------------DKSIATTKRFDA 377

Query: 237 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--- 293
           LK++MT+++ G K L       ++   + AD++  +D+FEL+  PS+  V FR   +   
Sbjct: 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETAD 437

Query: 294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            ++L   L    ++     + +    G+  L+F + +P     D     ++I+  + E+
Sbjct: 438 LDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  381 bits (980), Expect = e-130
 Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 55/373 (14%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
           M SI+AA+ K   ++ + G          +LV + S+QS+ S++K+      G   V  +
Sbjct: 165 MYSIMAARYKYFPEVKTKG-----MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 219

Query: 58  RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
           + ++ G +        + E   KG +P  + AT GTT   AFD ++E+  IC++YN+WLH
Sbjct: 220 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 279

Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
           VDAA+ G  L+  ++ H   G+E  +S  +N HK +     CSA+ VK    L       
Sbjct: 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMC 339

Query: 178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL 237
             YL   D   +  S D                                     R     
Sbjct: 340 AGYLFQPDKQYDV-SYDT----------------------------GDKAIQCGRHVDIF 370

Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGD-- 293
           K W+  ++ G  G +  + K + LA+     ++  + FE+V    P    VCF       
Sbjct: 371 KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430

Query: 294 -------------NDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAF 339
                        + +  ++   +M      +          F R V+++P   Q D+ F
Sbjct: 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF 490

Query: 340 AWNEISHQSSEMN 352
              EI     +++
Sbjct: 491 LIEEIERLGQDLH 503

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  373 bits (959), Expect = e-127
 Identities = 93/371 (25%), Positives = 153/371 (41%), Gaps = 54/371 (14%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
           M ++  A+ ++  D    G           L  + S + + S++K A    +G   VR +
Sbjct: 179 MYAVNLARYQRYPDCKQRGL-----RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVV 233

Query: 58  RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
           ++D+ G +  + L   +    A+G +P  + AT GTT   AFD LE +  +CQ + +WLH
Sbjct: 234 KADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLH 293

Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN-ANHLTNTFFT 176
           VDAA+ GS LL   + HL  G++  DS A+N HK L     CSA+ +++ +N L     +
Sbjct: 294 VDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGS 353

Query: 177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA 236
              YL   D   +  + D                                     RR   
Sbjct: 354 QASYLFQQDKFYD-VALDTG----------------------------DKVVQCGRRVDC 384

Query: 237 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--- 293
           LKLW+  ++ G +GL+  + +   LA+   + ++K + FELV  P    VCF        
Sbjct: 385 LKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLR 444

Query: 294 ------------NDLTNQLYERLMSHKQIYIIKASFQGRP-FLRFVVTSPETNQCDVAFA 340
                       + +   L ER++    + I       R  F R VV +      D+ F 
Sbjct: 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFL 504

Query: 341 WNEISHQSSEM 351
            NE+     ++
Sbjct: 505 LNELERLGQDL 515

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score =  134 bits (338), Expect = 2e-35
 Identities = 50/346 (14%), Positives = 109/346 (31%), Gaps = 71/346 (20%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +++ L+AK   +       P +            A   +++  +K+A    + +R +  D
Sbjct: 140 LLACLSAKMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMKLRHVELD 188

Query: 61  -DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVD 119
                +    +   + ++         LV +         D++E LG I Q+Y + LHVD
Sbjct: 189 PTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVD 242

Query: 120 AAYAG------SALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT 173
           +                    L   +  V S + + HK+       S +  +N++   + 
Sbjct: 243 SCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQ 302

Query: 174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
           ++                +P +                       GG             
Sbjct: 303 YYV---------------NPAW----------------------TGGLYGSPTLAGSRPG 325

Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCPPSMGLVCFRLKG 292
              +  W T+ + G  G     ++ +  A KF   ++++    +++  P   ++ F  K 
Sbjct: 326 AIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT 385

Query: 293 DNDLTNQLYE--RLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCD 336
            N     ++E    +S K  +    + Q    L    T    +  D
Sbjct: 386 LN-----IHELSDRLSKKGWHF--NALQKPVALHMAFTRLSAHVVD 424

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score =  131 bits (332), Expect = 5e-35
 Identities = 55/335 (16%), Positives = 110/335 (32%), Gaps = 65/335 (19%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           ++++   K                  I           ++ S EK   + D+        
Sbjct: 100 LMALRCIKNIWREKRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIYAPIK 153

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
           ++  +    +  AV++          ++   GTT     DN+EEL  I +E NI++HVDA
Sbjct: 154 EDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDA 208

Query: 121 AYAGSALLLPEYAHLKRGLEY-------VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT 173
           A+ G  +   +  + K+G+ Y       VDS   + HK            +         
Sbjct: 209 AFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSG--GI--------- 257

Query: 174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
            F D  Y ++                +L       +  +  ++  G G            
Sbjct: 258 LFKDIGYKRYL----------DVDAPYLT---ETRQATILGTR-VGFGGA---------- 293

Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD 293
                 +  LR  G +G +  + + +         +++++ F+ V  P + +V    +  
Sbjct: 294 ----CTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDY 348

Query: 294 NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVT 328
            ++  +L +R        I  +       LR VV 
Sbjct: 349 KEVCKKLRDR-------GIYVSVCNCVKALRIVVM 376

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score =  131 bits (330), Expect = 3e-34
 Identities = 46/310 (14%), Positives = 90/310 (29%), Gaps = 54/310 (17%)

Query: 29  SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLV 88
           +   A     ++++ +K+A    + + +   D +      A+  A+  +         + 
Sbjct: 191 TAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN------TVVVA 244

Query: 89  ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-----RGLEYVD 143
            +         D + E+  +  E+ I  HVDA   G  L   E            LE V 
Sbjct: 245 GSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT 304

Query: 144 SFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK 203
           S + + HK+       S +  +  + L   +F                       +W G 
Sbjct: 305 SVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAA--------------------DWPGG 344

Query: 204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK 263
               P      S+                   +   W  + S G +G     R+ +  A 
Sbjct: 345 LYFSPT--FAGSR---------------PGALSATAWAAMLSLGEEGYLDATRRILQAAD 387

Query: 264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFL 323
           +    V      +++  P   L    +  D     Q+ E  M+ +   +        P  
Sbjct: 388 RLKAGVRAIPSLKILGDP---LWVIAVASDELNIYQVMEE-MAGRGWRL--NGLHRPPAF 441

Query: 324 RFVVTSPETN 333
              +T   T 
Sbjct: 442 HVALTLRHTE 451

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score =  128 bits (323), Expect = 1e-33
 Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 63/282 (22%)

Query: 34  YASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT 90
                S+ S  K+     +    V  +   D   +  + +  A+K+++  G  PC +++T
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLST 238

Query: 91  LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL--EYVDSFAFN 148
           L        D++ E+  IC+ Y+I   ++ AY   A+    Y    +      VD+   +
Sbjct: 239 LTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVVSS 295

Query: 149 AHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLP 208
           + K LLT      ++  +A  +                           +++ G+A   P
Sbjct: 296 SDKNLLTPIGGGLVYSTDAEFI-----------------------KEISLSYPGRASATP 332

Query: 209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL 268
                                       +   ++L S G K     ++   +  K   +L
Sbjct: 333 ---------------------------VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365

Query: 269 VEK---DDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMS 306
           +         + +   S    C  +  D  ++  +LY   ++
Sbjct: 366 LNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVT 407

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score =  108 bits (272), Expect = 2e-26
 Identities = 66/345 (19%), Positives = 112/345 (32%), Gaps = 62/345 (17%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           M++ LA KRK      + G  V + +I                EK A   +V +++++  
Sbjct: 131 MLAGLAFKRKWQNKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLS 184

Query: 61  DNG-VLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN------ 113
           +   V+     +  V E+        C+ A LG+T    F++++ L  +  E N      
Sbjct: 185 EGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWD 238

Query: 114 IWLHVDAAYAGSALLLPEYAHLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN 172
             +HVDAA  G               L  V S   + HK+ L       +  +N   L  
Sbjct: 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298

Query: 173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR 232
                                    +N+LG         LN SK     V          
Sbjct: 299 ELIFH--------------------INYLGADQPTFT--LNFSK-GSSQV---------- 325

Query: 233 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC-PPSMGLVCFRLK 291
               +  +  L   G +G +  +           + +EK +RF +V     + LV F LK
Sbjct: 326 ----IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLK 381

Query: 292 GDNDLTNQLYERLMSHK----QIYIIKASFQGRPFLRFVVTSPET 332
             +  T      ++         Y +  + Q    LR V+    +
Sbjct: 382 DSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFS 426

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 97.3 bits (242), Expect = 2e-22
 Identities = 57/295 (19%), Positives = 97/295 (32%), Gaps = 61/295 (20%)

Query: 34  YASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLG 92
                      K A   DV +R++        +    ++ A  E+         +V T G
Sbjct: 143 LVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFG 196

Query: 93  TTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGSALLLPEYAHLKR---GLEYVD 143
            T T  ++  + L     ++       I +H+DAA  G   L P  A        L  V 
Sbjct: 197 VTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--FLAPFVAPDIVWDFRLPRVK 254

Query: 144 SFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK 203
           S + + HK+ L    C  +  ++   L      +                    +++LG 
Sbjct: 255 SISASGHKFGLAPLGCGWVIWRDEEALPQELVFN--------------------VDYLGG 294

Query: 204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK 263
            +G     +N S+ P G VI                +      G +G          +A 
Sbjct: 295 QIGTFA--INFSR-PAGQVIA--------------QYYEFLRLGREGYTKVQNASYQVAA 337

Query: 264 KFADLVEKDDRFELVCP--PSMGL--VCFRLKGDNDLTNQLYE--RLMSHKQIYI 312
             AD + K   +E +C   P  G+  VCF+LK   D    LY+    +  +   +
Sbjct: 338 YLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQV 392

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 55/233 (23%)

Query: 42  SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA 98
           S  KS +      V +  +   D       A+   ++E   + +   CL +T        
Sbjct: 156 SCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTACFAPRV 213

Query: 99  FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD 158
            D LEEL  IC  Y+I   V+ AY   +            +  +D+F  +  K  +    
Sbjct: 214 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273

Query: 159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP 218
            + +              +  +++                 + G+A   P          
Sbjct: 274 GAII-----------AGFNEPFIQDISK------------MYPGRASASP---------- 300

Query: 219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK 271
                            +L + +TL S G  G +  L++   +    +  ++K
Sbjct: 301 -----------------SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK 336

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 52/220 (23%)

Query: 52  VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE 111
           V +  +   D       A+   V+E     +   C+ +T         D LEEL  IC  
Sbjct: 187 VVIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRVPDRLEELAVICAN 244

Query: 112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT 171
           Y+I   V+ AY   +            +  +D+F  +  K  +     + +         
Sbjct: 245 YDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII--------- 295

Query: 172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS 231
                +  +++                 + G+A   P                       
Sbjct: 296 --AGFNDSFIQEISK------------MYPGRASASP----------------------- 318

Query: 232 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK 271
               +L + +TL S G  G +  L++   +    ++ ++K
Sbjct: 319 ----SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK 354

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 48  IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DNLEEL 105
           +       +   D  G      L   + +  A  ++      T  + G       NL+E+
Sbjct: 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEV 209

Query: 106 GPICQEYNIWLHVDAAYAGSALLL-----PEYAH------LKRGLEYVDSFAFNAHKWLL 154
             I +++ I++ +D+A             P+Y +      +    +Y D+   +A K  L
Sbjct: 210 YEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL 269

Query: 155 TN 156
            N
Sbjct: 270 LN 271

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 13/124 (10%)

Query: 46  SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DNLE 103
             +  +     L     G +    L   + E  A+ +   CL  T+   G       N+ 
Sbjct: 139 DIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMR 198

Query: 104 ELGPICQEYNIWLHVDAA-YAGSALLL----PEYAH------LKRGLEYVDSFAFNAHKW 152
            +  + + + I +  DA     +A  +      + +      +     Y D    +  K 
Sbjct: 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258

Query: 153 LLTN 156
            L N
Sbjct: 259 CLVN 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.97
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.96
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.95
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.94
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.94
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.93
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.93
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.93
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.93
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.93
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.92
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.92
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.92
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.92
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.92
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.92
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.92
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.91
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.91
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.91
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.91
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.9
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.9
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.9
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.9
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.9
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.9
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.9
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.9
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.89
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.89
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.89
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.88
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.88
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.88
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.87
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.87
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.87
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.87
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.87
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.86
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.86
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.86
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.85
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.85
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.85
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.85
1svv_A	359	Threonine aldolase; structural genomics, structura	99.85
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.85
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.84
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.84
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.84
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.84
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.84
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.84
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.84
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.84
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.84
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.84
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.83
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.83
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.83
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.83
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.83
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.83
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.83
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.83
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.83
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.83
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.83
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.83
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.83
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.83
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.83
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.82
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.82
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.82
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.82
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.82
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.82
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.82
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.82
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.82
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.82
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.82
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.82
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.81
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.81
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.81
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.8
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.8
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.8
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.8
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.8
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.8
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.8
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.8
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.8
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.8
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.8
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.79
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.79
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.79
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.79
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.79
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.79
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.79
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.79
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.79
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.78
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.78
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.78
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.78
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.78
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.78
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.78
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.78
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.78
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.77
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.77
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.77
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.77
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.77
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.77
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.77
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.76
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.76
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.76
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.75
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.75
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.75
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.75
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.75
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.75
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.75
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.74
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.74
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.74
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.74
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.74
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.74
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.73
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.73
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.73
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.73
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.73
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.73
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.73
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.72
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.72
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.72
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.71
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.71
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.71
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.71
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.71
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.7
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.7
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.69
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.69
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.69
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.69
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.69
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.69
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.69
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.68
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.68
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.67
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.67
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.67
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.49
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.67
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.67
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.66
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.66
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.66
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.65
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.64
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.64
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.64
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.64
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.63
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.63
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.63
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.62
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.62
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.61
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.61
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.61
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.6
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.59
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.58
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.58
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.58
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.58
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.56
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.56
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.56
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.56
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.56
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.54
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.51
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.5
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.5
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.47
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.46
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.46
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.46
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.45
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.45
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.43
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.43
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.42
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.4
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.34
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.31
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.23
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.07
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	98.64
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.99
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.99
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.85

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.8e-46  Score=369.02  Aligned_cols=321  Identities=45%  Similarity=0.836  Sum_probs=284.9

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      ++||++||++++.+.+..++++.+.++.++.+||+|+.+|+|+.+++.+.|++++.|++++++++|+++|+++|+++.++
T Consensus       159 ~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~  238 (481)
T 4e1o_A          159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQR  238 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhC
Confidence            46899999999988776677666666678999999999999999999999999999999889999999999999998877


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      +..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.++....+++.+|++++++|||+++|+|+|
T Consensus       239 g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g  318 (481)
T 4e1o_A          239 GLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCT  318 (481)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCE
T ss_pred             CCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceE
Confidence            87788999999999999999999999999999999999999999888787777777788889999999999999999999


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++++++..+.+.+...+.|+.....   ....++                            .+|++++++++.++++|
T Consensus       319 ~l~~~~~~~l~~~~~~~~~yl~~~~~---~~~~~~----------------------------~~~~~~~~r~~~~l~~~  367 (481)
T 4e1o_A          319 GFWVKDKYKLQQTFSVNPIYLRHANS---GVATDF----------------------------MHWQIPLSRRFRSVKLW  367 (481)
T ss_dssp             EEEESBHHHHHTTTCCCCGGGCCTTT---TTSCCG----------------------------GGGSSSSCCCCTHHHHH
T ss_pred             EEEEeCHHHHHHHhcCCchhccCccc---CCCCCc----------------------------ccccccCCCCccHHHHH
Confidence            99999887776666667788766432   112233                            56778888889999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                      ++++.+|.+|+++++++..++++++.+.|+++||++++.++.+++++|++.+.+..+.++.++|.++|.+++.++.+.+.
T Consensus       368 ~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~  447 (481)
T 4e1o_A          368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDK  447 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTE
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCE
Confidence            99999999999999999999999999999999999998888899999999765566789999999999888888888998


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .++|+++++++++++||++++++|+++++++.
T Consensus       448 ~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          448 LIIRFTVTSQFTTRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999888889999999999999999988764

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=2.6e-46  Score=368.62  Aligned_cols=321  Identities=48%  Similarity=0.868  Sum_probs=267.2

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      ++||++||++++.+.+..++++.+.++.++.+|++|+.+|+|+.+++++.|++++.|++++++ +|+++|+++|++++++
T Consensus       153 l~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~  231 (475)
T 3k40_A          153 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAE  231 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHC
Confidence            478999999998776655666666566678999999999999999999999999999998889 9999999999998877


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      +..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.....+.+++.+|++++++|||+++|.|+|
T Consensus       232 ~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g  311 (475)
T 3k40_A          232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCS  311 (475)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCE
T ss_pred             CCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceE
Confidence            77788999999999999999999999999999999999999999887777777767777889999999999999999999


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++++++..+.+.+...+.|+.....   +...++                            .+|++++++++.++++|
T Consensus       312 ~l~~~~~~~l~~~~~~~~~yl~~~~~---~~~~~~----------------------------~~~~~~~sr~~~~l~l~  360 (475)
T 3k40_A          312 AMWLKDPSWVVNAFNVDPLYLKHDMQ---GSAPDY----------------------------RHWQIPLGRRFRALKLW  360 (475)
T ss_dssp             EEEESSGGGC----------------------------------------------------------CCCGGGTHHHHH
T ss_pred             EEEEeCHHHHHHHhcCCccccCCCcC---CCCCCc----------------------------ccccccCCCcccHHHHH
Confidence            99999887665555566777755422   111222                            45677888889999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                      ++++.+|.+|++++.++..++++++.+.|+++||++++.++..++++|++.+.+..+.++.++|.++|.+++.++.+.+.
T Consensus       361 ~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~  440 (475)
T 3k40_A          361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDV  440 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTE
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCE
Confidence            99999999999999999999999999999999999999888899999999765566789999999999888888888999


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      .++|+++++++++++||++++++|+++++++..
T Consensus       441 ~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~  473 (475)
T 3k40_A          441 YFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ  473 (475)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            999998888899999999999999999988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=5.4e-42  Score=338.86  Aligned_cols=325  Identities=49%  Similarity=0.872  Sum_probs=260.7

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      +||+++|++++++.+..+.++.+.+..++.+|++++.+|+++.++++..|++++.|++++++.+|+++|+++++++++++
T Consensus       154 ~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g  233 (486)
T 1js3_A          154 VALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAG  233 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCC
Confidence            57888888766543221122222222246789999999999999999999999999998889999999999999999888


Q ss_pred             CccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCccee
Q psy3048          82 LIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSA  161 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~  161 (367)
                      ..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.++..+.+++.+|++++++|||+++|.|+|+
T Consensus       234 ~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~  313 (486)
T 1js3_A          234 LIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSA  313 (486)
T ss_dssp             CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEE
T ss_pred             CCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEE
Confidence            88889999999999999999999999999999999999999998877666665555666789999999999999999999


Q ss_pred             EEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHH
Q psy3048         162 MWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWM  241 (367)
Q Consensus       162 l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (367)
                      ++++++..+.+.+...+.|+...... .+...++                            .++++..++++.++++|+
T Consensus       314 l~~~~~~~l~~~~~~~~~yl~~~~~~-~~~~~~~----------------------------~~~~~~~~rr~~~~~~~~  364 (486)
T 1js3_A          314 MWVKRRTDLTGAFKLDPVYLKHSHQG-SGLITDY----------------------------RHWQLPLGRRFRSLKMWF  364 (486)
T ss_dssp             EEESCHHHHHGGGC-------------CCSCCCG----------------------------GGSSSCSCCCCTHHHHHH
T ss_pred             EEEeCHHHHHHHhcCCchhhCCCccc-ccCCCCc----------------------------cccCCCCCCchhHHHHHH
Confidence            99988765545455556676543210 0011222                            456667788888999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCee
Q psy3048         242 TLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRP  321 (367)
Q Consensus       242 ~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  321 (367)
                      +++.+|.+|++++.++..++++++.+.|+++||++++.+|..++++|++.+.+..+.++.++|.++|++++.++.+.+..
T Consensus       365 al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~  444 (486)
T 1js3_A          365 VFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQF  444 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEE
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEE
Confidence            99999999999999999999999999999999999988778899999987534456889999999998777777788888


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      ++|+++++++++++||+++++.|+++++++..+.
T Consensus       445 ~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~  478 (486)
T 1js3_A          445 VLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE  478 (486)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999877889999999999999999998876553

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=1.9e-40  Score=329.54  Aligned_cols=317  Identities=26%  Similarity=0.430  Sum_probs=262.9

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHHHHHHHHHHh
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVKEDL   78 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~L~~~l~~~~   78 (367)
                      +||+++|++++++....|-     ...++.+|++|+.+|+|+.++++..|+   +++.|++++++.+|+++|+++|++..
T Consensus       169 ~al~~a~~~~~~~~~~~G~-----~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~  243 (511)
T 3vp6_A          169 YSIMAARYKYFPEVKTKGM-----AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAK  243 (511)
T ss_dssp             HHHHHHHHHHCTHHHHHCG-----GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcCc-----ccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHH
Confidence            5788888887644322220     012478999999999999999999988   99999998889999999999999887


Q ss_pred             hCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc
Q psy3048          79 AKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD  158 (367)
Q Consensus        79 ~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g  158 (367)
                      ++|..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.++..+.|++.+|++++++||||++|.|
T Consensus       244 ~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g  323 (511)
T 3vp6_A          244 QKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ  323 (511)
T ss_dssp             HTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC
T ss_pred             hcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC
Confidence            77777889999999999999999999999999999999999999999988887777778888899999999999999999


Q ss_pred             ceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHH
Q psy3048         159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK  238 (367)
Q Consensus       159 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (367)
                      +|+++++++..+...+...+.|+...... .....++                            .++++++++++.+++
T Consensus       324 ~g~l~~~~~~~~~~~~~~~~~yl~~~~~~-~~~~~~~----------------------------~~~~~~~~r~~~al~  374 (511)
T 3vp6_A          324 CSAILVKEKGILQGCNQMHASYLFQQDKH-YDVSYDT----------------------------GDKAIQCGRHVDIFK  374 (511)
T ss_dssp             CEEEEESSTTHHHHHHCCCCTTTCCSSCS-SCGGGCC----------------------------GGGSSCSSCCCCHHH
T ss_pred             eEEEEEeCHHHHHHHhccCCccccCcccc-cccccCc----------------------------cCCCCCCCCchHHHH
Confidence            99999998877766666778887654320 0000111                            457788888899999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCc---------------hHHHHHH
Q psy3048         239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDN---------------DLTNQLY  301 (367)
Q Consensus       239 ~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~---------------~~~~~l~  301 (367)
                      +|++++.+|.+|++++.++..++++++.+.|+++||++++.  +|..++++|++.+..               ..+.++.
T Consensus       375 ~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~  454 (511)
T 3vp6_A          375 FWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIK  454 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988  578899999875421               1234788


Q ss_pred             HHHhccCcEEEEEeEECC-eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         302 ERLMSHKQIYIIKASFQG-RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       302 ~~L~~~g~~~~~~~~~~~-~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ++|.++|.+++.+....+ ..++|++++++.++++||++++++|+++.+.+-
T Consensus       455 ~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~  506 (511)
T 3vp6_A          455 ALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH  506 (511)
T ss_dssp             HHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             HHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            999999987776554444 458999877899999999999999999987654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=2.6e-38  Score=313.98  Aligned_cols=314  Identities=26%  Similarity=0.432  Sum_probs=252.4

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccc--cCceEEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHHHHHHHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDI--KSRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVKE   76 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~L~~~l~~   76 (367)
                      +||+++|++++++.+       +++.  .++.+|++++.+|+++.+++...|.   +++.|++++++.+|+++|++++++
T Consensus       166 ~al~~~~~~~~~~~~-------~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~  238 (504)
T 2okj_A          166 YSIMAARYKYFPEVK-------TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILE  238 (504)
T ss_dssp             HHHHHHHHHHCTTHH-------HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHh-------hcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHH
Confidence            567788876653211       1121  1266899999999999999998876   899999988899999999999998


Q ss_pred             HhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC
Q psy3048          77 DLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN  156 (367)
Q Consensus        77 ~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p  156 (367)
                      ...++..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.+...+.+++.+|++++++|||+++|
T Consensus       239 ~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p  318 (504)
T 2okj_A          239 AKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL  318 (504)
T ss_dssp             HHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC
T ss_pred             HHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC
Confidence            76666667899999999999999999999999999999999999999988876666566666777899999999999999


Q ss_pred             CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccH
Q psy3048         157 HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA  236 (367)
Q Consensus       157 ~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (367)
                      .|+|+++++++..+...+...++|+....... ....++                            .+++.+.++++.+
T Consensus       319 ~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~----------------------------~~~~~~~~rr~~~  369 (504)
T 2okj_A          319 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQY-DVSYDT----------------------------GDKAIQCGRHVDI  369 (504)
T ss_dssp             SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSS-CGGGCC----------------------------GGGSSCSSCBCCH
T ss_pred             cceEEEEEECHHHHHHHhcCCCccccCCcccc-cCcCCc----------------------------ccCCCCCCCCccH
Confidence            99999999886555544455667775432200 000111                            4456678888889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC--CCCceeEEEEEcCCc---------------hHHHH
Q psy3048         237 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGDN---------------DLTNQ  299 (367)
Q Consensus       237 ~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~--~~~~~~v~f~~~~~~---------------~~~~~  299 (367)
                      +++|++++.++.+|++++.++..++++++.+.|++++|++++.  +|..++++|+..+..               ..+.+
T Consensus       370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (504)
T 2okj_A          370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPK  449 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987  577888999874311               12467


Q ss_pred             HHHHHhccCcEEEEEeEECCe-eEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         300 LYERLMSHKQIYIIKASFQGR-PFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       300 l~~~L~~~g~~~~~~~~~~~~-~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.++|.++|.+++.+..+.+. .++|+++.+++++++||++++++|+++++++
T Consensus       450 l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          450 IKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             HHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            888999999877776666664 6999987678999999999999999987653

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.5e-38  Score=313.47  Aligned_cols=314  Identities=24%  Similarity=0.415  Sum_probs=245.2

Q ss_pred             chHHHHHHHhHhhhhcCCCCccccccc---CceEEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHHHHHHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIK---SRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVK   75 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~L~~~l~   75 (367)
                      ++|++||++++.+..  ++++.+++..   ++.+|++++.+|+|+.+++...|.   +++.|++++++.+|+++|+++++
T Consensus       173 ~al~~ar~~~~~~~~--~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~  250 (497)
T 2qma_A          173 MGLMLARDWIADKLS--GHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIA  250 (497)
T ss_dssp             HHHHHHHHHHHHHHH--CCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHhhc--ccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHH
Confidence            578888887764321  1112222222   367899999999999999998876   89999998889999999999998


Q ss_pred             HHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc
Q psy3048          76 EDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT  155 (367)
Q Consensus        76 ~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~  155 (367)
                      ++..++..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+ +...+.+++.+|++++++|||+++
T Consensus       251 ~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~  329 (497)
T 2qma_A          251 QAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQ  329 (497)
T ss_dssp             HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCC
T ss_pred             HHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCC
Confidence            8765555567899999999999999999999999999999999999999887665 544456677789999999999999


Q ss_pred             CCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc
Q psy3048         156 NHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR  235 (367)
Q Consensus       156 p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (367)
                      |.++|+++++++..+. .+...+.|+.....    ..+++                            ..+...+++++.
T Consensus       330 p~~~G~l~~~~~~~~~-~~~~~~~yl~~~~~----~~~~~----------------------------~~~~~~~~r~~~  376 (497)
T 2qma_A          330 TISCGALLVNDKSNFK-FLLHHADYLNREHD----ELPNL----------------------------VDKSIATTKRFD  376 (497)
T ss_dssp             CSSCEEEEESCGGGGG-GGCC----------------------------------------------------CCSCCCT
T ss_pred             CcceEEEEEeCHHHHH-HhcCCchhcCCccc----cCCCc----------------------------cccCCCCCCchh
Confidence            9999999998776443 23334556543221    01122                            334556778889


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc----hHHHHHHHHHhccCcEE
Q psy3048         236 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN----DLTNQLYERLMSHKQIY  311 (367)
Q Consensus       236 ~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~----~~~~~l~~~L~~~g~~~  311 (367)
                      ++++|++++.++.+|++++.++..++++++.+.|+++++++++.++..++++|++.+..    ..+.++.+.|.++|.++
T Consensus       377 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~  456 (497)
T 2qma_A          377 ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAV  456 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCB
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999999999999999999999999999988888899999986532    23457888899999877


Q ss_pred             EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         312 IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       312 ~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..++.+.+..++|+++.+++++++|++++++.|+++++++
T Consensus       457 ~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          457 LGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             CEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             EEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence            7777778888999987678999999999999999988763

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=307.53  Aligned_cols=315  Identities=29%  Similarity=0.447  Sum_probs=244.4

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc---ceEEEecCCCCCcCHHHHHHHHHHHh
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVKEDL   78 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~---~v~~v~~~~~~~~d~~~L~~~l~~~~   78 (367)
                      +||+++|+++++..+..+  .  .+ .++++|++++.+|+++.++++..|.   +++.|++++++.+|+++|++++++..
T Consensus       180 ~al~~ar~~~~~~~~~~G--~--~~-~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~  254 (515)
T 2jis_A          180 YAVNLARYQRYPDCKQRG--L--RT-LPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAE  254 (515)
T ss_dssp             HHHHHHHHHHCTTHHHHC--G--GG-SCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHhhcC--c--cc-cCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHH
Confidence            577888876643211111  0  01 2467999999999999999999888   89999998889999999999999876


Q ss_pred             hCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc
Q psy3048          79 AKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD  158 (367)
Q Consensus        79 ~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g  158 (367)
                      .++..|.+|++++++|++|.++|+++|+++|++||+|+|||+||+++.+..+.+...+.+++.+|++++++|||+++|.|
T Consensus       255 ~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g  334 (515)
T 2jis_A          255 AEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQ  334 (515)
T ss_dssp             HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC
T ss_pred             hCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCC
Confidence            66666789999999999999999999999999999999999999999887776665566777889999999999999999


Q ss_pred             ceeEEEecc-hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHH
Q psy3048         159 CSAMWVKNA-NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL  237 (367)
Q Consensus       159 ~g~l~~~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (367)
                      +|+++++++ ..+.+.+...++|+....... ....++                            ..++++.++++.++
T Consensus       335 ~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~~----------------------------~~~~~~~~rr~~al  385 (515)
T 2jis_A          335 CSALLLQDTSNLLKRCHGSQASYLFQQDKFY-DVALDT----------------------------GDKVVQCGRRVDCL  385 (515)
T ss_dssp             CEEEEESCCSCHHHHHHCC---------CCS-CGGGCC----------------------------GGGCSCSSCCCCHH
T ss_pred             eeEEEEeChHHHHHHHhcCCchhccCCcccc-cccCCC----------------------------CCCCCCCCCcccHH
Confidence            999999887 555554555567774432100 000011                            33556777888899


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC--------chH-------HHHHHH
Q psy3048         238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--------NDL-------TNQLYE  302 (367)
Q Consensus       238 ~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--------~~~-------~~~l~~  302 (367)
                      ++|+.++.++.+|++++.++..++++++.+.|++++|++++.++..+.++|++.+.        ...       +..+.+
T Consensus       386 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~  465 (515)
T 2jis_A          386 KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKE  465 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877778899987421        111       124677


Q ss_pred             HHhccCcEEEEEeEECC-eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         303 RLMSHKQIYIIKASFQG-RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       303 ~L~~~g~~~~~~~~~~~-~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .|.++|.+++.+..+.+ ..++|+++++++++++||+++++.|++++++
T Consensus       466 ~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          466 RMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             HHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            88889987766555554 4699998767899999999999999988654

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-34  Score=283.13  Aligned_cols=302  Identities=21%  Similarity=0.229  Sum_probs=234.1

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~   80 (367)
                      +++++++..+.++.+..|..      ..++.|++++.+|+++.++++..|++++.|+++++ +.+|+++|++++++++  
T Consensus       132 ~a~~a~~~~~~~~~~~~G~~------~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t--  203 (502)
T 3hbx_A          132 LAGLAFKRKWQNKRKAEGKP------VDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENT--  203 (502)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC------CSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTE--
T ss_pred             HHHHHHHHHHhHHHHhcCCC------CCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCC--
Confidence            46777777766654433321      23568899999999999999999999999998765 9999999999998764  


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhc------CcEEEEecccccccc--cChhhhhhhCCCCCcceeeeccccc
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEY------NIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFAFNAHKW  152 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~------gi~l~vD~a~~~~~~--~~~~~~~~~~~~~~~D~~~~~~hK~  152 (367)
                          .+|++++++|++|.++|+++|+++|+++      |+|+|||+||+++..  ..+.....+. ...+|++++++|||
T Consensus       204 ----~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~  278 (502)
T 3hbx_A          204 ----ICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKY  278 (502)
T ss_dssp             ----EEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTT
T ss_pred             ----EEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccc
Confidence                5899999999999999999999999999      999999999987642  2233222222 35679999999999


Q ss_pred             cccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc
Q psy3048         153 LLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR  232 (367)
Q Consensus       153 l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (367)
                      +++|.|+|+++++++..+...+...+.|+.....                                      .+.+..++
T Consensus       279 l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~--------------------------------------~~~~~~sr  320 (502)
T 3hbx_A          279 GLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP--------------------------------------TFTLNFSK  320 (502)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEE--------------------------------------ECCSCCSC
T ss_pred             cCCCCCeEEEEEeCHHHhhHHhccCcccccCCCC--------------------------------------CccccCCc
Confidence            9999999999998776554444444555543311                                      11222223


Q ss_pred             c-ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCc-hHHHHHHHHHhccCc
Q psy3048         233 R-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDN-DLTNQLYERLMSHKQ  309 (367)
Q Consensus       233 ~-~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~  309 (367)
                      . ...+++|++++.++.+|+.+++++..++++++.+.|+++++++++.+ +..++++|++++.. ....++.++|.++|+
T Consensus       321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi  400 (502)
T 3hbx_A          321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGW  400 (502)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCc
Confidence            2 24688999999999999999999999999999999999988999877 78999999997532 234589999999997


Q ss_pred             EEEEEe---EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         310 IYIIKA---SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       310 ~~~~~~---~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      +.....   ...+..++|+++ ...++++|++++++.|+++++++....
T Consensus       401 ~v~~~~~p~~~~~~~~lRisv-~~~~t~edid~li~~L~~~l~~l~~~~  448 (502)
T 3hbx_A          401 IVPAYTMPPNAQHITVLRVVI-REDFSRTLAERLVIDIEKVMRELDELP  448 (502)
T ss_dssp             BCCEEECCTTCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EEeeccCCcccCCceEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            642222   223457999976 578889999999999999998876543

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=1.2e-33  Score=276.54  Aligned_cols=299  Identities=18%  Similarity=0.207  Sum_probs=223.4

Q ss_pred             chHHHHHHHhHhhhhcCCCCccccccc-CceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhh
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIK-SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLA   79 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~   79 (367)
                      ++++++++++..+....|       .. .+..|++++ .|+++.++++..|++++.|++++ ++.+|+++|++++++++ 
T Consensus       118 ~al~a~~~~~~~~~~~~G-------~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~t-  188 (452)
T 2dgk_A          118 LGGMAMKWRWRKRMEAAG-------KPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENT-  188 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTT-------CCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTE-
T ss_pred             HHHHHHHHHHHHHHHhcC-------CCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhCC-
Confidence            456677765554322121       11 134677788 99999999999999999999976 79999999999997654 


Q ss_pred             CCCccEEEEEecCCCcccccCChhhHHHHHhhc------CcEEEEeccccccccc--ChhhhhhhCCCCCcceeeecccc
Q psy3048          80 KGLIPCCLVATLGTTGTCAFDNLEELGPICQEY------NIWLHVDAAYAGSALL--LPEYAHLKRGLEYVDSFAFNAHK  151 (367)
Q Consensus        80 ~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~------gi~l~vD~a~~~~~~~--~~~~~~~~~~~~~~D~~~~~~hK  151 (367)
                           .+|++++++|++|.++|+++|+++|++|      |+|+|||+||+++..+  .+.....+ ....+|++++++||
T Consensus       189 -----~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~hK  262 (452)
T 2dgk_A          189 -----IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-RLPRVKSISASGHK  262 (452)
T ss_dssp             -----EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-TSTTEEEEEEETTT
T ss_pred             -----EEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-CCCCCcEEEECccc
Confidence                 5899999999999999999999999996      9999999999887541  22211111 14467999999999


Q ss_pred             ccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccc
Q psy3048         152 WLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS  231 (367)
Q Consensus       152 ~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (367)
                      |+++|+|+|+++++++..+.+.+...+.|+....                                      ..++..++
T Consensus       263 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~  304 (452)
T 2dgk_A          263 FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI--------------------------------------GTFAINFS  304 (452)
T ss_dssp             TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCE--------------------------------------EECCSCCS
T ss_pred             ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCC--------------------------------------CCcccCCC
Confidence            9999999999999876544232322344442210                                      11222333


Q ss_pred             ccc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC----CCceeEEEEEcCCc---hHHHHHHHH
Q psy3048         232 RRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCFRLKGDN---DLTNQLYER  303 (367)
Q Consensus       232 ~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~---~~~~~l~~~  303 (367)
                      +.+ ..+++|++++.++.+|++++.++..++++++.+.|+++++++++.+    +..++++|++++..   ....++.++
T Consensus       305 r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~  384 (452)
T 2dgk_A          305 RPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSER  384 (452)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHH
Confidence            333 5688899999999999999999999999999999999988998865    57789999986521   123689999


Q ss_pred             HhccCcE---EEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         304 LMSHKQI---YIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       304 L~~~g~~---~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      |.++|+.   +..+....+..++|++++ .++|++|+|+++++|+++++++...
T Consensus       385 L~~~Gi~v~~~~~~~~~~~~~~lRis~~-~~~t~e~id~li~~l~~~~~~~~~~  437 (452)
T 2dgk_A          385 LRLRGWQVPAFTLGGEATDIVVMRIMCR-RGFEMDFAELLLEDYKASLKYLSDH  437 (452)
T ss_dssp             HHHTTCBCCEEECSTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCeeeeeeCCcccCCeEEEEEEec-CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            9999863   222222335679999764 5667999999999999998877644

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=249.22  Aligned_cols=271  Identities=18%  Similarity=0.222  Sum_probs=206.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +..|++++.+|.++.++++..|++++.|++++ ++.+|+++|++++++++      .+|++++++|++|.++|+++|+++
T Consensus       158 ~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~p~nptG~~~~l~~i~~l  231 (497)
T 3mc6_A          158 EPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKNT------VLLVGSAPNFPHGIADDIEGLGKI  231 (497)
T ss_dssp             SCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCSSE------EEEEEETTCTTTCCCCSCTTTTTH
T ss_pred             CceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhhCC------EEEEEECCCCCCCcCCCHHHHHHH
Confidence            34788899999999999999999999999987 79999999999987644      689999999999999999999999


Q ss_pred             HhhcCcEEEEeccccccccc---------ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcc
Q psy3048         109 CQEYNIWLHVDAAYAGSALL---------LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~---------~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      |++||+|+|||+||+++...         .+.+.....   .+|++++++|||+++|.|+|+++++++..........+.
T Consensus       232 a~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~---g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~  308 (497)
T 3mc6_A          232 AQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVP---GVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPA  308 (497)
T ss_dssp             HHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTST---TCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred             HHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCC---CCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccc
Confidence            99999999999999876542         111222222   359999999999999999999999775433211111111


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      |....          +          .                  .....+++ ....+++|++++.++.+|+++..++.
T Consensus       309 ~~~~~----------~----------~------------------~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~  350 (497)
T 3mc6_A          309 WTGGL----------Y----------G------------------SPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEI  350 (497)
T ss_dssp             CTTSC----------B----------C------------------CSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC----------c----------C------------------CcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHH
Confidence            11110          0          0                  00111111 11246688999999999999999999


Q ss_pred             HHHHHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         259 ISLAKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       259 ~~la~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      .++++++.+.|++ ++|++++.++..+.++|+..+  ....++.+.|.++|+.. ..  ...+..+|++++  .++++|+
T Consensus       351 ~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v-~~--~~~~~~~ri~~~--~~t~e~i  423 (497)
T 3mc6_A          351 VGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT--LNIHELSDRLSKKGWHF-NA--LQKPVALHMAFT--RLSAHVV  423 (497)
T ss_dssp             HHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTT--TTHHHHHHHHHTTTCBC-EE--CCSSCCEEEECC--TTTTCTH
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCC--CCHHHHHHHHHhCCEEE-ec--CCCCCeEEEEEe--CCCHHHH
Confidence            9999999999999 799999888888888887653  23678999999999643 22  223346898664  5689999


Q ss_pred             HHHHHHHHHHHHHhhCC
Q psy3048         338 AFAWNEISHQSSEMNLP  354 (367)
Q Consensus       338 d~li~~l~~~~~~~~~~  354 (367)
                      ++++++|+++++++...
T Consensus       424 ~~~~~~L~~~l~~~~~~  440 (497)
T 3mc6_A          424 DEICDILRTTVQELKSE  440 (497)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999987654

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.96  E-value=1.9e-28  Score=243.60  Aligned_cols=273  Identities=15%  Similarity=0.148  Sum_probs=207.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +..|+++..+|.++.++++..|++++.|++++++.+|+++|++++++.+      .+|++++++|++|.++|+++|.++|
T Consensus       192 ~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~la  265 (514)
T 3mad_A          192 APEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNT------VVVAGSAPGYPHGVVDPIPEIAALA  265 (514)
T ss_dssp             SCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTTE------EEEEEETTCTTTCCCCCHHHHHHHH
T ss_pred             CCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccCC------EEEEEeCCCCCCccccCHHHHHHHH
Confidence            4578889999999999999999999999998899999999999997654      5889999999999999999999999


Q ss_pred             hhcCcEEEEeccccccccc--------ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         110 QEYNIWLHVDAAYAGSALL--------LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~--------~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++||+|+|+|+||+++.++        .+.+....   ..+|++++++|||+++|.|+|+++++++............|.
T Consensus       266 ~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~---~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~  342 (514)
T 3mad_A          266 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRL---EGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP  342 (514)
T ss_dssp             HHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTS---TTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCT
T ss_pred             HHhCCeEEEecccccccchhHHhcCCCCCcccccC---CCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccC
Confidence            9999999999999876542        11122212   245999999999999999999999987654322110000110


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      ..          .+                            ..+...+++. ...++++++++.++.++++++.++..+
T Consensus       343 ~~----------~~----------------------------~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~  384 (514)
T 3mad_A          343 GG----------LY----------------------------FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQ  384 (514)
T ss_dssp             TC----------SE----------------------------EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC----------cc----------------------------cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            00          00                            0111112221 234688899999999999999999999


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +++++.+.|++++|++++.++ .+++.|...+  ....++.++|.++|++. . . ...+..+|++++...++++|++++
T Consensus       385 ~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~--~~~~~l~~~L~~~Gi~v-~-g-~~~~~~~Ri~~~~~~~~~e~i~~~  458 (514)
T 3mad_A          385 AADRLKAGVRAIPSLKILGDP-LWVIAVASDE--LNIYQVMEEMAGRGWRL-N-G-LHRPPAFHVALTLRHTEPGVVDRF  458 (514)
T ss_dssp             HHHHHHHHHHTSTTCEESSCC-SSEEEEECSS--SCHHHHHHHHHTTTCBC-E-E-ETTTTEEEEECCGGGGSTTHHHHH
T ss_pred             HHHHHHHHHhhCCCeEEeCCC-eEEEEEeCCC--CCHHHHHHHHHhcCCEe-c-c-CCCCCeEEEEEecCCCCHHHHHHH
Confidence            999999999999999988665 4567776543  23578999999998653 2 2 233457999876677788999999


Q ss_pred             HHHHHHHHHHhhCCC
Q psy3048         341 WNEISHQSSEMNLPR  355 (367)
Q Consensus       341 i~~l~~~~~~~~~~~  355 (367)
                      ++.|+++++++..+.
T Consensus       459 l~~L~~~l~~~~~~~  473 (514)
T 3mad_A          459 LADLQDAVAQVRAHP  473 (514)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999998876543

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.96  E-value=8.3e-28  Score=235.49  Aligned_cols=261  Identities=15%  Similarity=0.158  Sum_probs=190.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .+|++++.+|.++.++++..|++++.++.   ++++.+|+++|++++++...++ .+++|+.+.++|++|.++|+++|++
T Consensus       177 ~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~  255 (456)
T 2z67_A          177 NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAK  255 (456)
T ss_dssp             CEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHH
Confidence            34565667999999999999999999886   6679999999999994321111 2467778889999999999999999


Q ss_pred             HHhhcCcEEEEeccccccccc-ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALL-LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~-~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +|++||+|+|||+||+...+. .+.....+.+  .+|++++++|||+++|.|+|++++++++.+...   .+.|.+... 
T Consensus       256 la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l---~~~~~g~~~-  329 (456)
T 2z67_A          256 ICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEI---SLSYPGRAS-  329 (456)
T ss_dssp             HHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HTTSCSCBC-
T ss_pred             HHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhc---CcCCCCCCC-
Confidence            999999999999999865541 1221112222  469999999999999999999999766544432   122221100 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                      +              ..++.+++++..++.+|++++.++..++++++.
T Consensus       330 --------------------------------~--------------~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~  363 (456)
T 2z67_A          330 --------------------------------A--------------TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD  363 (456)
T ss_dssp             --------------------------------S--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------C--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                            0              114678888888899999999999999999999


Q ss_pred             HHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe--------E---ECCeeEEEEEecCCCC
Q psy3048         267 DLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA--------S---FQGRPFLRFVVTSPET  332 (367)
Q Consensus       267 ~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~--------~---~~~~~~lRi~~~~~~~  332 (367)
                      ++|++++   |+.++.++  +.++|++..... ..++.++|.++|+..+...        .   .....++|+++ ..++
T Consensus       364 ~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~-~~~~  439 (456)
T 2z67_A          364 ELLNDLSKKTGGKFLDVE--SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNA-AIGV  439 (456)
T ss_dssp             HHHHHHHHHSSCCBCCCC--CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEEC-CTTC
T ss_pred             HHHHhcccccCCEecCCC--CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhh-hcCC
Confidence            9999886   76665444  888888732111 4578888888873111111        0   11236899965 6788


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQS  348 (367)
Q Consensus       333 ~~edid~li~~l~~~~  348 (367)
                      +++|||+++++|++++
T Consensus       440 t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          440 RTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CHHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=5.2e-26  Score=217.03  Aligned_cols=261  Identities=20%  Similarity=0.231  Sum_probs=200.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +-.|++++.+|.++..+++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.++
T Consensus       123 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~~l  196 (397)
T 3f9t_A          123 HPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDV------DGIIGIAGTTELGTIDNIEELSKI  196 (397)
T ss_dssp             SCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCC------CEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred             CeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCC------eEEEEECCCCCCCCCCCHHHHHHH
Confidence            55788889999999999999999999999988899999999999987 44      488889999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccCh-----------hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLP-----------EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~-----------~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      |++||+++++|++|+++.+...           ......    .+|++++++||++.+|.++|+++++++..... +...
T Consensus       197 ~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~-~~~~  271 (397)
T 3f9t_A          197 AKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL----GVDSITIDPHKMGHCPIPSGGILFKDIGYKRY-LDVD  271 (397)
T ss_dssp             HHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG----TCSEEECCTTTTTCCCSSCEEEEESSGGGGGG-TCEE
T ss_pred             HHHhCCeEEEEccccchhhhhcccccccccccccccccc----cCCeEEEccccccCCCCCceEEEEeCHHHHHh-hccC
Confidence            9999999999999987654211           111111    45999999999999999999999977654432 1111


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc-cccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR-RFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                      .+|+.....                                       .....++ ....+.++++++.++..+++++.+
T Consensus       272 ~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  312 (397)
T 3f9t_A          272 APYLTETRQ---------------------------------------ATILGTRVGFGGACTYAVLRYLGREGQRKIVN  312 (397)
T ss_dssp             CTTSSSSEE---------------------------------------CSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCc---------------------------------------cccccccccchHHHHHHHHHHHhHHHHHHHHH
Confidence            233322111                                       0000000 123467778888888889999999


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHH
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~ed  336 (367)
                      +..++++++.+.|+++ |++++.++..+.++|..+.    ..++.+.|.++|+. +.+.  ..+.++|+++ ...++++|
T Consensus       313 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~-v~~~--~~~~~~Ri~~-~~~~~~e~  383 (397)
T 3f9t_A          313 ECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDED----YKEVCKKLRDRGIY-VSVC--NCVKALRIVV-MPHIKREH  383 (397)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECTT----HHHHHHHHHHTTCB-CEEC--SSSSEEEEEC-CTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeCC----HHHHHHHHHhCCeE-Eecc--CCCCEEEEEE-cCCCCHHH
Confidence            9999999999999998 8887777788888887653    56888999989854 4332  2246999976 57788999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQSS  349 (367)
Q Consensus       337 id~li~~l~~~~~  349 (367)
                      +++++++|+++++
T Consensus       384 i~~~~~~l~~~l~  396 (397)
T 3f9t_A          384 IDNFIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998754

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.94  E-value=8.2e-26  Score=217.56  Aligned_cols=267  Identities=17%  Similarity=0.138  Sum_probs=186.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|++++.+|.|+.+++.+.|++++.|++   ++.+.+|++.|+++|++...  ..+.+|+.+.+++.+|.++||++|+++
T Consensus       146 ~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~--~~~~~Vv~t~t~~g~g~~ddl~~Ia~i  223 (450)
T 3bc8_A          146 YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP--EHILCLHSTTACFAPRVPDRLEELAVI  223 (450)
T ss_dssp             EEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG--GGEEEEEEESSCCTTBCCCCHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCC--CCEEEEEEECCcCCCceecCHHHHHHH
Confidence            4555688999999999999999988877   45699999999999988641  124556665444445689999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCC--CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGL--EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~--~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ||+||+|+|||+|||+...+......  .++  +.+|+++.|+|||+.+|.|++++++++++.+....   ..|..... 
T Consensus       224 a~~~gi~l~VD~A~G~~~~~~~~l~~--~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~---~~~~g~~s-  297 (450)
T 3bc8_A          224 CANYDIPHVVNNAYGLQSSKCMHLIQ--QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---KMYPGRAS-  297 (450)
T ss_dssp             HHHHTCCEEEECTTTTTCHHHHHHHH--HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH---HHSCSCBC-
T ss_pred             HHHCCCeEEEECCCchhhhhhHhHHH--HHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH---HHhhcCCc-
Confidence            99999999999999987654433221  112  46799999999999999999999998776654331   12221100 


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  +  ...+.+|..+..+|.+++++.+++..+++++++
T Consensus       298 --------------------------------------------~--SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~  331 (450)
T 3bc8_A          298 --------------------------------------------A--SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS  331 (450)
T ss_dssp             --------------------------------------------S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        0  113788988888899999999999999999999


Q ss_pred             HHhcCCC---CeEEeCCCCce-eEEEEEcCC----chHHHHHHHHHhccC---cEEE----------EEe-------EEC
Q psy3048         267 DLVEKDD---RFELVCPPSMG-LVCFRLKGD----NDLTNQLYERLMSHK---QIYI----------IKA-------SFQ  318 (367)
Q Consensus       267 ~~L~~~~---g~~~~~~~~~~-~v~f~~~~~----~~~~~~l~~~L~~~g---~~~~----------~~~-------~~~  318 (367)
                      ++|++++   |+.++..+..+ ...+.+...    +...-++.-.+...|   .-..          .-.       ...
T Consensus       332 ~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~  411 (450)
T 3bc8_A          332 TQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY  411 (450)
T ss_dssp             HHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCC
T ss_pred             HHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecC
Confidence            9999988   88887754322 222333210    112234444444333   1111          000       011


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +..++=+ ...+.++++|+++|+++|+++.++..+
T Consensus       412 ~~~~i~~-~~sig~~~~di~~l~~~L~~~~~~~~~  445 (450)
T 3bc8_A          412 PCAYLNA-AAAIGMKMQDVDLFIKRLDKCLNIVRK  445 (450)
T ss_dssp             SSCEEEE-ECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEE-EecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            2334444 457888999999999999999776644

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.94  E-value=2.8e-25  Score=213.57  Aligned_cols=295  Identities=13%  Similarity=0.028  Sum_probs=199.1

Q ss_pred             CceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          29 SRLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        29 ~~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      ++-.|++++.+|++  +...++..|++++.++.++++.+|+++|++++++..     +.+|++++++|++|.+.|+++|.
T Consensus        87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~nptG~~~~l~~i~  161 (411)
T 3nnk_A           87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIR-----PRLLLTVQGDTSTTMLQPLAELG  161 (411)
T ss_dssp             TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCC-----CeEEEEeCCCCCcceeccHHHHH
Confidence            34467777889988  888888899999999998889999999999998631     24888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhcc---CCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF---TDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~---~~~~yl~~  183 (367)
                      ++|++||+++++|++|+.+....+...   .   .+|++++++|||+++|.|+|+++++++ .......   ..+.+...
T Consensus       162 ~l~~~~~~~li~Dea~~~~~~~~~~~~---~---~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~g~  234 (411)
T 3nnk_A          162 EICRRYDALFYTDATASLGGNPLETDV---W---GLDAVSAGMQKCLGGPSGTSPITLSAR-MEEAIRRRKCVEEGIRTD  234 (411)
T ss_dssp             HHHHHHTCEEEEECTTTBTTBCCCTTT---T---TCSEEECCSTTTTCCCSSEEEEEECHH-HHHHHHTTCCCCGGGCCT
T ss_pred             HHHHHcCCEEEEECCcccCCcccchhc---c---CCcEEEecCccccCCCCceEEEEECHH-HHHHHhhccccccccccc
Confidence            999999999999999987655332111   1   359999999999999999999998653 2222211   12222222


Q ss_pred             CCCC-C-CCCCCCc-hhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         184 TDAP-M-NTQSPDY-TVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       184 ~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      .... . ......| ....|.+.       +..          ..+...........++.++++.+..+|++++.++..+
T Consensus       235 ~~~gg~~~~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  297 (411)
T 3nnk_A          235 AHRDGDEEMIYSNYFDLGMVMDY-------WGP----------ERLNHHTEATTALFGARECARLILQEGLDYGIARHKL  297 (411)
T ss_dssp             TCCCCSSCCCSCSTTCHHHHHHH-------HST----------TCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccccccCCCCcccccchHHHHhh-------hcc----------ccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            1100 0 0000000 00000000       000          0001011111233455566777677789999999999


Q ss_pred             HHHHHHHHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~e  335 (367)
                      +++++.+.|+++ |+++..++   ..++++|.++. .....++.+.|.++ |+ .+.++. ..+..++|++++...++++
T Consensus       298 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~  374 (411)
T 3nnk_A          298 HGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQ-GINGDQARKLMLEDFGI-EIGTSFGPLHGKVWRIGTMGYNARKD  374 (411)
T ss_dssp             HHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCT-TCCHHHHHHHHHHHHSE-EEEECCGGGTTTEEEEECCGGGCSHH
T ss_pred             HHHHHHHHHHHc-CCEeCCCcccccccEEEEECCC-CCCHHHHHHHHHHhcCe-EEeCccCCCCCCEEEEeCccCcCCHH
Confidence            999999999987 88876543   24677787753 22356888888877 74 444332 1234599997644566899


Q ss_pred             HHHHHHHHHHHHHHHhhCCC
Q psy3048         336 DVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       336 did~li~~l~~~~~~~~~~~  355 (367)
                      |+++++++|+++++++....
T Consensus       375 ~i~~~~~~l~~~l~~~~~~~  394 (411)
T 3nnk_A          375 CVMTTLSALEAVLNYLKFPT  394 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999876544

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.93  E-value=4.4e-25  Score=212.56  Aligned_cols=290  Identities=12%  Similarity=0.051  Sum_probs=194.2

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|++++.+|++  +...++..|++++.++.+.++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus        86 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~  159 (416)
T 3isl_A           86 EDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKP------KIVAMVHGETSTGRIHPLKAIG  159 (416)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCC------SEEEEESEETTTTEECCCHHHH
T ss_pred             CCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCC------cEEEEEccCCCCceecCHHHHH
Confidence            3466667789998  7778888999999999988899999999999984 44      4889999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC---c-----
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD---R-----  178 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~---~-----  178 (367)
                      ++|++||+++++|++|+.+....+...   .   .+|++++++|||+++|.|+|+++.+++ .........   .     
T Consensus       160 ~l~~~~~~~li~D~a~~~~~~~~~~~~---~---~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~~~~~~~~~~~~Gw~~~  232 (416)
T 3isl_A          160 EACRTEDALFIVDAVATIGGCEVKVDE---W---KIDAAIGGTQKCLSVPSGMAPITYNER-VADVIAARKKVERGIATQ  232 (416)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCCCTTT---T---TCSEEECCSSSTTCCCSSEEEEEECHH-HHHHHHTC----------
T ss_pred             HHHHHcCCEEEEECCccccCCCcchhh---c---CCCEEEecCccccCCCCCeEEEEECHH-HHHHhhcccccccccccc
Confidence            999999999999999986655332110   1   359999999999999999999988653 232221110   0     


Q ss_pred             ---cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHH
Q psy3048         179 ---VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       179 ---~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                         ++...+..   .....+....|....            ..     ..+...........++.++++.+...|++++.
T Consensus       233 ~~~~~~~gg~~---~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~  292 (416)
T 3isl_A          233 ADRAALSGNRP---ITSNYFDLSQLEDYW------------SE-----RRLNHHTEATTMLYALREGVRLVLEEGLETRF  292 (416)
T ss_dssp             --------CCC---CSCSTTCHHHHHHHT------------ST-----TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccchhccCCCC---CCccccchHHHHhhh------------cc-----cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence               11111100   000000000110000            00     00010011112334556677776677799999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCC
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSP  330 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~  330 (367)
                      ++..++++++.+.|+++ |+++..++.   .++++|.++. .....++.+.|.++ |+ .+.++. ..+..++|++++..
T Consensus       293 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gi-~v~~g~~~~~~~~iRi~~~~~  369 (416)
T 3isl_A          293 ERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIPG-GIDGESVRDMLLAQFGI-EIASSFGPLAGKIWRIGTMGY  369 (416)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCE-ECBCCCSTTTTTEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCCC-CCCHHHHHHHHHHhCCE-EEecCCCCCCCCEEEEecccC
Confidence            99999999999999996 888776542   4677788753 22367889999887 74 443322 12356999976433


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      .+.++|+++++++|+++++++....
T Consensus       370 ~~~~e~i~~~~~~l~~~~~~~~~~~  394 (416)
T 3isl_A          370 SCRKENVLFVLAGLEAVLLRHNAGI  394 (416)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCc
Confidence            4444559999999999999875443

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.93  E-value=1.9e-24  Score=211.93  Aligned_cols=284  Identities=12%  Similarity=0.051  Sum_probs=195.5

Q ss_pred             CceEEEecCCcchhH----HHHHHhCCcce-----EEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc
Q psy3048          29 SRLVAYASDQSNSSV----EKSAIIGDVPV-----RQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF   99 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~----~~~~~~~g~~v-----~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i   99 (367)
                      ++..|++++.+|.+.    ...++..|+++     ..++.+.++.+|+++|++++++.+.   .+.+|++++++|++|.+
T Consensus       154 ~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~---~~~lv~~~~~~n~tG~~  230 (465)
T 3e9k_A          154 KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD---SIAVILFSGVHFYTGQH  230 (465)
T ss_dssp             SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG---GEEEEEEESBCTTTCBB
T ss_pred             CCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC---CeEEEEEeCcccCccee
Confidence            355688899999884    44666788875     3345556799999999999985421   13689999999999999


Q ss_pred             CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCc
Q psy3048         100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       100 ~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      .|+++|.++||+||+++++|++|+.+..+.+....      .+|++++++||+++ +|.|+|++++++. ..........
T Consensus       231 ~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~------~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~  303 (465)
T 3e9k_A          231 FNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW------GVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALV  303 (465)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSC
T ss_pred             ecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc------CCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCccc
Confidence            99999999999999999999999987765543222      34999999999995 6777899998543 2322111111


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      ++........+.....+                   ....+.   ..+...........++.+++..+...|++++.++.
T Consensus       304 g~~~~~~~~~~~~~~~~-------------------~~~~~~---~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~  361 (465)
T 3e9k_A          304 GWFGHELSTRFKMDNKL-------------------QLIPGV---CGFRISNPPILLVCSLHASLEIFKQATMKALRKKS  361 (465)
T ss_dssp             CGGGBCHHHHTTCCSCC-------------------CBCSSG---GGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             CccCCCCCcccccCCCc-------------------CcCCCh---HHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            11111000000000000                   000000   11222222223456777888887777899999999


Q ss_pred             HHHHHHHHHHhcCC----------CCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEE
Q psy3048         259 ISLAKKFADLVEKD----------DRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLR  324 (367)
Q Consensus       259 ~~la~~l~~~L~~~----------~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lR  324 (367)
                      .++++++.+.|+++          +|++++.|+    ..+.++|+++. +  ..++.+.|.++|++ +.   ..++.++|
T Consensus       362 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~--~~~l~~~L~~~Gi~-v~---~~~~~~iR  434 (465)
T 3e9k_A          362 VLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P--NKDVFQELEKRGVV-CD---KRNPNGIR  434 (465)
T ss_dssp             HHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-T--TCCHHHHHHTTTEE-CE---EETTTEEE
T ss_pred             HHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C--HHHHHHHHHHCCEE-Ee---cCCCCEEE
Confidence            99999999999885          799988764    26778888762 2  45788889989854 32   34457999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +++...+++++||++++++|++++++.
T Consensus       435 is~~~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          435 VAPVPLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             EBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             EeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence            976578999999999999999987653

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.93  E-value=4.7e-24  Score=202.43  Aligned_cols=263  Identities=12%  Similarity=0.055  Sum_probs=189.7

Q ss_pred             CceEEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          29 SRLVAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      ++-.|++++.+|.++..++..   .|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus        87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~i  160 (382)
T 4hvk_A           87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDT------ILVSVQHANNEIGTIQPVEEI  160 (382)
T ss_dssp             GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTE------EEEECCSBCTTTCBBCCHHHH
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCc------eEEEEECCCCCceeeCCHHHH
Confidence            345778888999999887665   59999999998889999999999997654      589999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      .++|++||+ +++|++|+.+....+...   .+   +|++++++||+ .+|.|+|++++++...+.       .++....
T Consensus       161 ~~l~~~~~~-li~D~a~~~~~~~~~~~~---~~---~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~-------~~~~~~~  225 (382)
T 4hvk_A          161 SEVLAGKAA-LHIDATASVGQIEVDVEK---IG---ADMLTISSNDI-YGPKGVGALWIRKEAKLQ-------PVILGGG  225 (382)
T ss_dssp             HHHHSSSSE-EEEECTTTBTTBCCCHHH---HT---CSEEEEESGGG-TSCTTCEEEEEETTCCCC-------CSSCSSC
T ss_pred             HHHHHHcCE-EEEEhHHhcCCCCCCchh---cC---CCEEEEeHHHh-cCCCceEEEEEcCccCcC-------cccccCC
Confidence            999999999 999999987655433211   12   49999999996 468899999997653111       1111110


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .     .                               ..+............+.+++.. ..++++++.++..++++++
T Consensus       226 ~-----~-------------------------------~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~l  268 (382)
T 4hvk_A          226 Q-----E-------------------------------NGLRSGSENVPSIVGFGKAAEI-TAMEWREEAERLRRLRDRI  268 (382)
T ss_dssp             T-----G-------------------------------GGTSCSCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             C-----c-------------------------------CccccCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH
Confidence            0     0                               0000000011122333444443 3468899999999999999


Q ss_pred             HHHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-EC--C-----------------eeE
Q psy3048         266 ADLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQ--G-----------------RPF  322 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~--~-----------------~~~  322 (367)
                      .+.|++++|+++..++.   .+.+.|.+++.  ...++.+.|.++|+. +.++. +.  .                 ..+
T Consensus       269 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  345 (382)
T 4hvk_A          269 IDNVLKIEESYLNGHPEKRLPNNVNVRFSYI--EGESIVLSLDMAGIQ-ASTGSACSSKTLQPSHVLMACGLKHEEAHGT  345 (382)
T ss_dssp             HHHHTTSTTEEECSCSSSBCTTEEEEEETTC--CHHHHHHHHHHTTCB-CBCC--------CCCHHHHHTTCCHHHHHTE
T ss_pred             HHHHhcCCCeEEeCCccccCCCEEEEEECCC--CHHHHHHHHHHCCEE-EeeCCccCCCCCcchHHHHHcCCChhhcCCe
Confidence            99999999999876542   35778887642  356888889888854 32221 10  0                 468


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +|+++ ...++++|+++++++|+++++++.+
T Consensus       346 iRl~~-~~~~t~e~i~~~~~~l~~~~~~~~~  375 (382)
T 4hvk_A          346 LLLTL-GRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             EEEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEc-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99976 5778899999999999999988764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=207.13  Aligned_cols=274  Identities=16%  Similarity=0.130  Sum_probs=192.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCc-ccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTG-TCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~-~G~i~dl~~I~  106 (367)
                      ..|++++..|.|+.+++.+.|+++++|++   ++...+|+++|+++|++...   ..+++++++++++ .+.++||++|+
T Consensus       163 d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga---~~i~~V~~Ttt~y~p~~~ddI~eIa  239 (501)
T 3hl2_A          163 KYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGP---DCILCIHSTTSCFAPRVPDRLEELA  239 (501)
T ss_dssp             CEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCG---GGEEEEEEECSCCTTBCCCCHHHHH
T ss_pred             CEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCC---CcEEEEEecCCCCCCcccccHHHHH
Confidence            45666999999999999999999999988   34589999999999998631   1345555544444 45779999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||+||+++|||+|||+...+...........+++|+++.|.||++.+|.|.+++++++++.+++.   ...|.+..  
T Consensus       240 eIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~---~~~yPGr~--  314 (501)
T 3hl2_A          240 VICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI---SKMYPGRA--  314 (501)
T ss_dssp             HHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH---HHTSCSCB--
T ss_pred             HHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHH---HHhCCCCC--
Confidence            9999999999999999998755543322211233579999999999999999888888887766543   11221110  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                   ..+.++.+|+.+..+|.+|+++++++..++++||+
T Consensus       315 ---------------------------------------------S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~  349 (501)
T 3hl2_A          315 ---------------------------------------------SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLS  349 (501)
T ss_dssp             ---------------------------------------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                         01335779999999999999999999999999999


Q ss_pred             HHhcCCC---CeEEeCCC-CceeEEEEEcCC----chHHHHHHHHHhccCc---EEEEEe--------EE---------C
Q psy3048         267 DLVEKDD---RFELVCPP-SMGLVCFRLKGD----NDLTNQLYERLMSHKQ---IYIIKA--------SF---------Q  318 (367)
Q Consensus       267 ~~L~~~~---g~~~~~~~-~~~~v~f~~~~~----~~~~~~l~~~L~~~g~---~~~~~~--------~~---------~  318 (367)
                      ++|+++.   |-+++..+ ..-.+++.+...    +....++-..|..+++   -.+.++        .+         .
T Consensus       350 ~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~  429 (501)
T 3hl2_A          350 NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNY  429 (501)
T ss_dssp             HHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCC
T ss_pred             HHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCC
Confidence            9998853   45566533 222333444321    1123466667776551   112111        11         1


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSS  358 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~~~  358 (367)
                      ...++-++ +....+++|||.|++.|++++.++.++....
T Consensus       430 ~~~yl~~a-~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~~  468 (501)
T 3hl2_A          430 PCAYLNAA-SAIGMKMQDVDLFIKRLDRCLKAVRKERSKE  468 (501)
T ss_dssp             SSCEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CchHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            24477775 4688899999999999999999887766644

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.93  E-value=3e-24  Score=204.24  Aligned_cols=283  Identities=14%  Similarity=0.082  Sum_probs=195.4

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|++++..|++  +...++..|++++.++.+.++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus        77 gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~  150 (384)
T 3zrp_A           77 NDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEY------KLVALTHVETSTGVREPVKDVI  150 (384)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCE------EEEEEESEETTTTEECCHHHHH
T ss_pred             CCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCC------cEEEEeCCCCCCceECcHHHHH
Confidence            3456667788876  5566678899999999988899999999999987 33      5888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhh-cc-CCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT-FF-TDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~-~~-~~~~yl~~~  184 (367)
                      ++|++||+++++|++|+.+....+.     .. ..+|++++++||++++|.|+|+++.+++ .+... .. ....+.   
T Consensus       151 ~l~~~~~~~li~D~a~~~~~~~~~~-----~~-~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~---  220 (384)
T 3zrp_A          151 NKIRKYVELIVVDGVSSVGAEEVKA-----EE-WNVDVYLTASQKALGSAAGLGLLLLSPK-ALSILDSQNSIAGYY---  220 (384)
T ss_dssp             HHHGGGEEEEEEECTTTTTTSCCCT-----TT-TTCSEEEEETTSTTCCCSSEEEEEECHH-HHHHHHHCCCSCCST---
T ss_pred             HHHHhcCCEEEEECcccccCccccc-----cc-cCCCEEEecCcccccCCCceEEEEECHH-HHHHhcCCCCCCccc---
Confidence            9999999999999999866543321     11 1359999999999999999999998653 23221 00 000100   


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                              .+  ...|....    .. ++.+..      ..+  .........++.+++..+...+++++.++..+++++
T Consensus       221 --------~~--~~~~~~~~----~~-~~~~~~------~~~--g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  277 (384)
T 3zrp_A          221 --------LD--LRNWLPVM----RG-AEEGKA------AYF--ATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASA  277 (384)
T ss_dssp             --------TC--HHHHHHHH----HH-HHTTCC------CCS--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             --------cc--HHHHHHHH----Hh-hcccCC------CcC--CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                    00  00000000    00 000000      000  001112234555677776677899999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.+.|+++ |+++..++    ..+++.|++++  ....++.+.|.++|+. +.++......++|+++ ..+++++|++++
T Consensus       278 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~-v~~g~~~~~~~iRi~~-~~~~~~e~i~~~  352 (384)
T 3zrp_A          278 IRAGLEAL-GLEIVARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVE-FAPGVHPAFKYFRIGH-MGWVTPNDAIIA  352 (384)
T ss_dssp             HHHHHHHT-TCCBSCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCC-CEECCCTTCCEEEEEC-CSSCCHHHHHHH
T ss_pred             HHHHHHHC-CCeEccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEE-EecCCCCCcCEEEEec-cccCCHHHHHHH
Confidence            99999998 88876654    34566787764  3367899999999854 4333212226899975 566889999999


Q ss_pred             HHHHHHHHHHhhCCCC
Q psy3048         341 WNEISHQSSEMNLPRG  356 (367)
Q Consensus       341 i~~l~~~~~~~~~~~~  356 (367)
                      +++|+++++++.....
T Consensus       353 ~~~l~~~l~~~~~~~~  368 (384)
T 3zrp_A          353 ISVIERTLRKLGEPIR  368 (384)
T ss_dssp             HHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHcCCCcC
Confidence            9999999998765443

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.92  E-value=3.3e-24  Score=201.49  Aligned_cols=269  Identities=13%  Similarity=0.053  Sum_probs=185.0

Q ss_pred             EEEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|++++.+|++.  ...++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.++
T Consensus        76 ~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~i~~l  149 (353)
T 2yrr_A           76 PVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRY------RMVALVHGETSTGVLNPAEAIGAL  149 (353)
T ss_dssp             CEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCC------SEEEEESEETTTTEECCHHHHHHH
T ss_pred             cEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCC------CEEEEEccCCCcceecCHHHHHHH
Confidence            466667788884  556677899999999988889999999999987 43      478889999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCc-cccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDR-VYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~-~yl~~~~~~  187 (367)
                      |++||+++++|++|+.+....+. ..  .+   +|++++++|||+++|+|+|+++++++ .+... ...+ .|+...   
T Consensus       150 ~~~~~~~li~D~a~~~~~~~~~~-~~--~~---~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~l-~~~~~~~~~~~---  218 (353)
T 2yrr_A          150 AKEAGALFFLDAVTTLGMLPFSM-RA--MG---VDYAFTGSQKCLSAPPGLAPIAASLE-ARKAF-TGKRGWYLDLA---  218 (353)
T ss_dssp             HHHHTCEEEEECTTTTTTSCCCH-HH--HT---CSEEECCTTSTTCCCSSCEEEEECHH-HHHHC-CCCSCSTTCHH---
T ss_pred             HHHcCCeEEEEcCcccccccccc-cc--cC---ceEEEecCcccccCCCceEEEEECHH-HHHHh-ccCCCccccHH---
Confidence            99999999999999755433221 11  12   49999999999999999999998653 23221 1001 111000   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                 .+.+.        .....       ..++   .......++.++++.+...|++++.++..++++++.+
T Consensus       219 -----------~~~~~--------~~~~~-------~~~~---~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  269 (353)
T 2yrr_A          219 -----------RVAEH--------WERGG-------YHHT---TPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLE  269 (353)
T ss_dssp             -----------HHHHH--------HTTCC-------CSSC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHhhh--------hhcCC-------CCCC---CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                       00000        00000       0000   0111224445666666666788999999999999999


Q ss_pred             HhcCCCCeEEeCCC--CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH-HHHHH
Q psy3048         268 LVEKDDRFELVCPP--SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA-FAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid-~li~~  343 (367)
                      .|+++ |+++..++  ...+++|+++. .....++.+.|.++|+ .+.+.. .....++|+++ +.+++++|++ +++++
T Consensus       270 ~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~g~~~~~~~~iRi~~-~~~~~~~~~~~~~~~~  345 (353)
T 2yrr_A          270 ELKAR-GFRPYPKASPLPTVLVVRPPE-GVDADRLVRALYAEGV-AVAGGIGPTRGQVLRLGL-MGEGARREAYQAFLKA  345 (353)
T ss_dssp             HHHHT-TCEESCSSSBCTTEEEEECCT-TCCHHHHHHHHHHTTE-ECEECCGGGTTTCEEEEC-SGGGSCHHHHHHHHHH
T ss_pred             HHHHC-CCccccCccCCCeEEEEECCC-CCCHHHHHHHHHHCCE-EEeCCccccCCCeEEEec-CccCCHHHHHHHHHHH
Confidence            99987 89887643  34556787752 2235689999998874 443322 22346899975 4566788898 99999


Q ss_pred             HHHHHHH
Q psy3048         344 ISHQSSE  350 (367)
Q Consensus       344 l~~~~~~  350 (367)
                      |++++++
T Consensus       346 l~~~l~~  352 (353)
T 2yrr_A          346 LDRALAL  352 (353)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9998764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.92  E-value=3.5e-24  Score=204.41  Aligned_cols=284  Identities=11%  Similarity=0.057  Sum_probs=189.2

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|+++..+|++  +...++..|++++.++.+.++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus        98 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~  171 (393)
T 3kgw_A           98 GDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKP------VLLFLVHGESSTGVVQPLDGFG  171 (393)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCC------SEEEEESEETTTTEECCCTTHH
T ss_pred             CCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCC------cEEEEeccCCcchhhccHHHHH
Confidence            3345555677764  4677778999999999988889999999999987 44      4889999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|++||+++++|++|+.+....+..      -..+|++++++||++++|.|+|+++.+++ .............     
T Consensus       172 ~l~~~~~~~li~De~~~~g~~~~~~~------~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~-----  239 (393)
T 3kgw_A          172 ELCHRYQCLLLVDSVASLGGVPIYMD------QQGIDIMYSSSQKVLNAPPGISLISFNDK-AKYKVYSRKTKPV-----  239 (393)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCCCTT------TTTCCEEEEESSSTTCCCSSCEEEEECHH-HHHHHHTCSSCCS-----
T ss_pred             HHHHHcCCEEEEECCccccCcccchh------hcCCCEEEecCcccccCCCceeEEEECHH-HHHHHhccCCCCC-----
Confidence            99999999999999998554332210      11359999999999999999999998543 2322211110000     


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                         ....++  ..+ ..       .+.....      ..+...........++.+++..+..++++++.++..++++++.
T Consensus       240 ---~~~~~~--~~~-~~-------~~~~~~~------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  300 (393)
T 3kgw_A          240 ---SFYTDI--TYL-AK-------LWGCEGE------TRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLH  300 (393)
T ss_dssp             ---CSTTCH--HHH-HH-------HTTCSSS------CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ---ceeecH--HHH-HH-------hhhhccc------cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               000000  000 00       0000000      0000111111223455566666667788999999999999999


Q ss_pred             HHhcCCCCeEEeCCC---C-ceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP---S-MGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~---~-~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.|+++ |+++..++   . ..+++|.++. .....++.++|.++ |+ .+.++. ..+..++|++++...++++|++++
T Consensus       301 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~  377 (393)
T 3kgw_A          301 KHLQEM-GLKFFVKDPEIRLPTITTVTVPA-GYNWRDIVSYVLDHFSI-EISGGLGPTEERVLRIGLLGYNATTENVDRV  377 (393)
T ss_dssp             HHHHHT-TCCBSSSSGGGBCSSEEEEECCT-TBCHHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCCHHHHHHH
T ss_pred             HHHHHc-CCeeccCChhhcCCeEEEEeCCC-CCCHHHHHHHHHHhCCE-EEeCCcccCCCCEEEEEecccCCCHHHHHHH
Confidence            999998 88876432   2 3455677653 23467889999888 74 343322 123568999753344589999999


Q ss_pred             HHHHHHHHHHhhC
Q psy3048         341 WNEISHQSSEMNL  353 (367)
Q Consensus       341 i~~l~~~~~~~~~  353 (367)
                      +++|+++++++.+
T Consensus       378 ~~~l~~~l~~~~~  390 (393)
T 3kgw_A          378 AEALREALQHCPK  390 (393)
T ss_dssp             HHHHHHHHHHSCB
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987643

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.92  E-value=7.2e-24  Score=201.87  Aligned_cols=277  Identities=13%  Similarity=0.032  Sum_probs=192.5

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +-.|++++.+|++  +...++..|++++.++.+.++.+|+++|++++++..    .+.+|++++++|++|.+.|+++|.+
T Consensus        95 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~  170 (386)
T 2dr1_A           95 GGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP----DVEAVTITYNETSTGVLNPLPELAK  170 (386)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHH
T ss_pred             CCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC----CCcEEEEEeecCCcchhCCHHHHHH
Confidence            3467777889998  888888899999999998888999999999996421    1357888899999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~  186 (367)
                      +|++||+++++|++|+.+....+.     ... .+|+++.++||++++|.|+|++++++. ........ ...+.     
T Consensus       171 l~~~~~~~li~D~a~~~~~~~~~~-----~~~-~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~-----  238 (386)
T 2dr1_A          171 VAKEHDKLVFVDAVSAMGGADIKF-----DKW-GLDVVFSSSQKAFGVPPGLAIGAFSER-FLEIAEKMPERGWY-----  238 (386)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCCT-----TTT-TCSEEEEETTSTTCCCSSCEEEEECHH-HHHHHTTCTTCCST-----
T ss_pred             HHHHcCCeEEEEccccccCccccc-----ccc-CCcEEEEeccccccCCCceEEEEECHH-HHHHHhcCCCCceE-----
Confidence            999999999999999876553221     111 359999999999999988999998643 33221100 00000     


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhcc-CCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLN-CSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKK  264 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~  264 (367)
                            .++  ..+...        .. ..          .............+..+++.+... +++++.++..+++++
T Consensus       239 ------~~~--~~~~~~--------~~~~~----------~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~  292 (386)
T 2dr1_A          239 ------FDI--PLYVKY--------LKEKE----------STPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKM  292 (386)
T ss_dssp             ------TCH--HHHHHH--------HHHHS----------SCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------EeH--HHHHHh--------hccCC----------CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                  000  000000        00 00          000001112234555666665555 688999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.+.|+++ |+++..++   ..++++++++. .....++.+.|.++|+ .+.+... .+..++|+++ ..+++++|++++
T Consensus       293 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~-~~~~~~~~i~~~  368 (386)
T 2dr1_A          293 VREGVREI-GLDILAEPGHESPTITAVLTPP-GIKGDEVYEAMRKRGF-ELAKGYGSVKEKTFRIGH-MGYMKFEDIQEM  368 (386)
T ss_dssp             HHHHHHHT-TCCBSSCTTCBCSSEEEEECCT-TCCHHHHHHHHHHTTE-ECEECCGGGTTTEEEEEC-CSSCCHHHHHHH
T ss_pred             HHHHHHHc-CCeeCcCccccCCceEEEEcCC-CCCHHHHHHHHHHCCe-EEecCccccCCCEEEEEC-CCCCCHHHHHHH
Confidence            99999988 88776543   35677787753 2235688999998874 4443321 1346899976 457899999999


Q ss_pred             HHHHHHHHHHhh
Q psy3048         341 WNEISHQSSEMN  352 (367)
Q Consensus       341 i~~l~~~~~~~~  352 (367)
                      +++|+++++++.
T Consensus       369 ~~~l~~~~~~~~  380 (386)
T 2dr1_A          369 LDNLREVINELK  380 (386)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC
Confidence            999999988764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.92  E-value=4.5e-24  Score=204.08  Aligned_cols=282  Identities=15%  Similarity=0.103  Sum_probs=186.9

Q ss_pred             ceEEEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|++.  ...++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus        94 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~l~~i~  167 (393)
T 2huf_A           94 GDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKP------SVLFLTQGDSSTGVLQGLEGVG  167 (393)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCC------SEEEEESEETTTTEECCCTTHH
T ss_pred             CCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCC------cEEEEEccCCCccccCCHHHHH
Confidence            34567777888884  334556899999999987889999999999987 44      4788899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC---Ccccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT---DRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~---~~~yl~~  183 (367)
                      ++|++||+++++|++|+.+....+ .    ... .+|+++.++||++++|+|+|++++++ +........   ..+|...
T Consensus       168 ~~~~~~~~~li~D~a~~~~~~~~~-~----~~~-~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (393)
T 2huf_A          168 ALCHQHNCLLIVDTVASLGGAPMF-M----DRW-EIDAMYTGSQKVLGAPPGITPVSFSH-RAVERYKRRNTKVKVYYWD  240 (393)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBCCC-T----TTT-TCSEEECCSSSTTCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGC
T ss_pred             HHHHHcCCEEEEEcccccCCCCcc-h----hhc-CccEEEECCCcccccCCCeEEEEECH-HHHHHHhhcCCCCceEEEc
Confidence            999999999999999976544322 1    111 35999999999999999999998853 333322111   1111100


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ...          ..++           +.. ...     ..+...........++.++++.+..++++++.++..++++
T Consensus       241 ~~~----------~~~~-----------~~~-~~~-----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  293 (393)
T 2huf_A          241 MSL----------VGDY-----------WGC-FGR-----PRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAK  293 (393)
T ss_dssp             HHH----------HHHH-----------TTC-SSS-----CCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hHH----------HHhh-----------hcc-ccc-----cCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            000          0000           000 000     0000001111122344456666555678889999999999


Q ss_pred             HHHHHhcCCCCeEEeCCC--Cc-eeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE-CCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPP--SM-GLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF-QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~--~~-~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|+++ |+++..++  .. .++.++++. .....++.++|.++ |+ .+.+... .+..++|++++...++++|++
T Consensus       294 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~gi-~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~  370 (393)
T 2huf_A          294 RLYRGLQDA-GFELYADPKDRLSTVTTIKVPQ-GVDWLKAAQYAMKTYLV-EISGGLGPTAGQVFRIGLMGQNATTERVD  370 (393)
T ss_dssp             HHHHHHHHT-TCCBSSCGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCE-ECBCCCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred             HHHHHHHHc-CCeeccCccccCCcEEEEEcCC-CCCHHHHHHHHHHhCCE-EEecCcccccCCEEEEEcccCcCCHHHHH
Confidence            999999988 88776543  23 367777752 22356888888765 74 4433221 234689997633345799999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy3048         339 FAWNEISHQSSEMNLP  354 (367)
Q Consensus       339 ~li~~l~~~~~~~~~~  354 (367)
                      +++++|+++++++..+
T Consensus       371 ~~~~~l~~~~~~~~~~  386 (393)
T 2huf_A          371 RVLQVFQEAVAAVKPD  386 (393)
T ss_dssp             HHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999887654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.92  E-value=1.3e-23  Score=198.26  Aligned_cols=279  Identities=13%  Similarity=0.108  Sum_probs=188.9

Q ss_pred             CceEEEecCCcchh-HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          29 SRLVAYASDQSNSS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        29 ~~~~v~~s~~~H~s-~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      ++.+++++...|.+ +...+...|++++.++.++++.+|+++|++++++..+    +.+|++++++|++|.+.|+++|.+
T Consensus        80 gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~nptG~~~~l~~i~~  155 (366)
T 1m32_A           80 QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPT----ISHIAMVHSETTTGMLNPIDEVGA  155 (366)
T ss_dssp             TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTT----CCEEEEESEETTTTEECCHHHHHH
T ss_pred             CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----eEEEEEecccCCcceecCHHHHHH
Confidence            35677777788876 5566777899999999988889999999999987421    347778889999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +|++||+++++|++|+.+....+.     ... ..|+++.++||++++|.|+|+++.++. ..........++.....  
T Consensus       156 l~~~~~~~li~Dea~~~~~~~~~~-----~~~-~~di~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~~~~~~~~--  226 (366)
T 1m32_A          156 LAHRYGKTYIVDAMSSFGGIPMDI-----AAL-HIDYLISSANKCIQGVPGFAFVIAREQ-KLAACKGHSRSLSLDLY--  226 (366)
T ss_dssp             HHHHHTCEEEEECTTTTTTSCCCT-----TTT-TCSEEEEESSSTTCCCSSEEEEEEEHH-HHTTCTTCCSCSTTCHH--
T ss_pred             HHHHcCCEEEEECCccccCcCccc-----ccc-CccEEEecCcccccCCCceEEEEECHH-HHHhhcCCCCCccccHH--
Confidence            999999999999999865443221     111 359999999999988999999998653 22221111011110000  


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~  266 (367)
                                ..|.+         +......     ..++   ........+.++++.+...| ++++.++..++++++.
T Consensus       227 ----------~~~~~---------~~~~~~~-----~~~~---~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~  279 (366)
T 1m32_A          227 ----------AQWRC---------MEDNHGK-----WRFT---SPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLV  279 (366)
T ss_dssp             ----------HHHHH---------HHHTTTC-----CSSC---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHhh---------hcccCCC-----CCCC---CCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence                      00000         0000000     0000   11112234556666665566 8889999999999999


Q ss_pred             HHhcCCCCeEEeCCC--Cce-eEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP--SMG-LVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~--~~~-~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|+++ |+++..++  ..+ .++++++.. .....++.+.|.++|+ .+.+....+..++|+++ ...++++|++++++
T Consensus       280 ~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~  356 (366)
T 1m32_A          280 AGMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGF-VIYPGKVSQSDCFRIGN-IGEVYAADITALLT  356 (366)
T ss_dssp             HHHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTE-ECEECCCSSSCEEEEEC-CSSCCHHHHHHHHH
T ss_pred             HHHHHC-CCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCE-EEECCcCCCCCEEEEec-CCCCCHHHHHHHHH
Confidence            999988 88776542  344 677777520 1235688899998884 45444333567999975 56778999999999


Q ss_pred             HHHHHHHH
Q psy3048         343 EISHQSSE  350 (367)
Q Consensus       343 ~l~~~~~~  350 (367)
                      +|++++++
T Consensus       357 ~l~~~~~~  364 (366)
T 1m32_A          357 AIRTAMYW  364 (366)
T ss_dssp             HHHHHCTT
T ss_pred             HHHHHHHh
Confidence            99988653

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.92  E-value=3e-23  Score=198.76  Aligned_cols=279  Identities=14%  Similarity=0.063  Sum_probs=187.6

Q ss_pred             ceEEEecCCcchhHH----HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~----~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++.+|.+..    ..++..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus       113 gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~l~~i  186 (406)
T 1kmj_A          113 GDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT------RLLAITHVSNVLGTENPLAEM  186 (406)
T ss_dssp             TCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTE------EEEEEESBCTTTCCBCCHHHH
T ss_pred             CCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCC------eEEEEeCCCccccCcCCHHHH
Confidence            446777888887753    3456679999999998889999999999987544      588899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      .++|++||+++++|++|+.+....+. ..  .   ..|+++.++||++ +|.|+|++++++ +.........   .....
T Consensus       187 ~~l~~~~~~~li~D~~~~~g~~~~~~-~~--~---~~d~~~~s~~K~~-g~~G~G~~~~~~-~~~~~~~~~~---~~~~~  255 (406)
T 1kmj_A          187 ITLAHQHGAKVLVDGAQAVMHHPVDV-QA--L---DCDFYVFSGHKLY-GPTGIGILYVKE-ALLQEMPPWE---GGGSM  255 (406)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCH-HH--H---TCSEEEEEGGGTT-SCTTCEEEEECH-HHHHHCCCSS---CSTTS
T ss_pred             HHHHHHcCCEEEEEchhhcCCCCCcc-cc--c---CCCEEEEEchhcc-CCCCcEEEEEeH-HHHhhcCCcc---cCCCc
Confidence            99999999999999999876543321 11  1   2499999999988 688899999853 3333211100   00000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      .........+   .|.    ..|               ..+...........++.++++.+...+++++.++..++++++
T Consensus       256 ~~~~~~~~~~---~~~----~~~---------------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  313 (406)
T 1kmj_A          256 IATVSLSEGT---TWT----KAP---------------WRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA  313 (406)
T ss_dssp             EEEEETTTEE---EEC----CTT---------------GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             eeeccccccc---ccC----CCc---------------hhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            0000000000   000    000               001111111111233335566655567888999999999999


Q ss_pred             HHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCCHH
Q psy3048         266 ADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~~e  335 (367)
                      .+.|++++|+++..++ ..+++.|.+++  ....++.+.|.++|+ .+.++..         ..+.++|+++ ..+++++
T Consensus       314 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi-~v~~g~~~~~~~~~~~g~~~~iRis~-~~~~t~~  389 (406)
T 1kmj_A          314 LSQLESVPDLTLYGPQNRLGVIAFNLGK--HHAYDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASL-AMYNTHE  389 (406)
T ss_dssp             HHHHTTSTTEEEESCTTCCSEEEEEETT--CCHHHHHHHHHHTTE-ECEEECTTCHHHHHHTTCSCEEEEEC-CTTCCHH
T ss_pred             HHHHhcCCCeEEecCCCcCCEEEEEECC--CCHHHHHHHHhhCCc-EEEeccccchHHHHhcCCCCeEEEEe-ecCCCHH
Confidence            9999999899987653 56778887753  225678888888885 3433321         1246999976 5778999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy3048         336 DVAFAWNEISHQSSEM  351 (367)
Q Consensus       336 did~li~~l~~~~~~~  351 (367)
                      |+++++++|+++++.+
T Consensus       390 ~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          390 EVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=1.7e-23  Score=205.76  Aligned_cols=275  Identities=16%  Similarity=0.180  Sum_probs=187.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~dl~~I~~l  108 (367)
                      +..|++++..|.+...++...|++++.|++++++.+|+++|++++++++      .+|+++++ |++|.+ +|+++|+++
T Consensus       156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t------~~v~~~~p-n~~G~~~~~l~~i~~l  228 (474)
T 1wyu_B          156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHV------AALMLTNP-NTLGLFERRILEISRL  228 (474)
T ss_dssp             CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTE------EEEEECSS-CTTSCCCTTHHHHHHH
T ss_pred             CCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCCc------eEEEEECC-CCCcccCCCHHHHHHH
Confidence            5578888999999999999999999999998889999999999997655      47778876 579999 799999999


Q ss_pred             HhhcCcEEEEecccccccc-cChhhhhhhCCCCCcceeeeccccccccCC-----cceeEEEecchhhhhhccCCccccc
Q psy3048         109 CQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-----DCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~-~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |++||+++|+|++|+.+.+ ..+...   .+   +|++++++||+++.|.     |+|++++++. .... +.  ..++.
T Consensus       229 ~~~~g~~li~Dea~~~~~~g~~~~~~---~g---~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~~~-l~--~~~~~  298 (474)
T 1wyu_B          229 CKEAGVQLYYDGANLNAIMGWARPGD---MG---FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPY-LP--VPLVE  298 (474)
T ss_dssp             HHHHTCEEEEEGGGGGGTTTTCCHHH---HT---CSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGG-CC--SCEEE
T ss_pred             HHHcCCEEEEeCchhhhhccCCCccc---CC---CcEEEEeCccccccCCCCCCCCeEEEEEcHH-HHHh-CC--CCeee
Confidence            9999999999999976543 111111   13   4999999999999885     6899998653 2221 11  11111


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....       .|.+ ++               .++..  ++.+....+....+.+.+..+..++.+++++..++..+++
T Consensus       299 ~~g~-------~~~~-~~---------------~~~~~--~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~  353 (474)
T 1wyu_B          299 RGEE-------GFYL-DF---------------DRPKS--IGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNA  353 (474)
T ss_dssp             ECSS-------CEEE-EC---------------CCTTC--CCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCC-------eeEe-cc---------------cCccc--CcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000       0000 00               00000  0000000111123455566676677889999999999999


Q ss_pred             HHHHHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid~  339 (367)
                      +++.+.|+++ |+++..++ .++.+.+.+.. .....++.++|.++|+... ...+.  ...++|+++ ...++++|+++
T Consensus       354 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi~~~-~~~~~~~~~~~lRis~-~~~~t~e~id~  429 (474)
T 1wyu_B          354 RYLKELLKEK-GYRVPYDGPSMHEFVAQPPE-GFRALDLAKGLLELGFHPP-TVYFPLIVKEALMVEP-TETEAKETLEA  429 (474)
T ss_dssp             HHHHHHHHHT-TCBCSSCSSCCSCEEEBCST-TCCHHHHHHHHHHTTCCCC-EESCSTTSTTCEEECC-CTTSCHHHHHH
T ss_pred             HHHHHHHhhc-CcEecCCCCcceEEEEEcCC-CCCHHHHHHHHHHCCcccc-ccccccccCCEEEEEe-ecCCCHHHHHH
Confidence            9999999987 88874332 33323344421 2336789999998886532 11111  246899965 56778999999


Q ss_pred             HHHHHHHHHHH
Q psy3048         340 AWNEISHQSSE  350 (367)
Q Consensus       340 li~~l~~~~~~  350 (367)
                      ++++|++++++
T Consensus       430 ~~~~L~~~~~~  440 (474)
T 1wyu_B          430 FAEAMGALLKK  440 (474)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=4.5e-23  Score=198.59  Aligned_cols=280  Identities=11%  Similarity=0.019  Sum_probs=190.0

Q ss_pred             ceEEEecCCcchh----HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s----~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++.+|.+    +...++..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus       118 gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~l~~i  191 (420)
T 1t3i_A          118 GDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT------KLVTVVHISNTLGCVNPAEEI  191 (420)
T ss_dssp             TCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTE------EEEEEESBCTTTCBBCCHHHH
T ss_pred             CCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCc------eEEEEeCCcccccCcCCHHHH
Confidence            4467778889998    566677789999999998889999999999997644      588899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      .++|++||+++++|++|+.+....+. ..  .+   .|++++++|| +.+|.|+|+++.++ +...........   ...
T Consensus       192 ~~l~~~~~~~li~D~a~~~~~~~~~~-~~--~~---~di~~~s~sK-~~~~~g~G~~~~~~-~~~~~~~~~~~~---~~~  260 (420)
T 1t3i_A          192 AQLAHQAGAKVLVDACQSAPHYPLDV-QL--ID---CDWLVASGHK-MCAPTGIGFLYGKE-EILEAMPPFFGG---GEM  260 (420)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCH-HH--HT---CSEEEEEGGG-TTSCTTCEEEEECH-HHHHHSCCCSCS---TTS
T ss_pred             HHHHHHcCCEEEEEhhhccCCccCch-hh--cC---CCEEEEehhh-hcCCCceEEEEEch-HHHhhcCceecC---CCc
Confidence            99999999999999999876543221 11  12   4999999999 55678889888853 333321111000   000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                      ..  ......  ..|    ...+               ..+..........+++.++++.+...+++++.++..++++++
T Consensus       261 ~~--~~~~~~--~~~----~~~~---------------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  317 (420)
T 1t3i_A          261 IA--EVFFDH--FTT----GELP---------------HKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYL  317 (420)
T ss_dssp             EE--EECSSC--EEE----CCTT---------------GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cc--cccccc--cCC----CCch---------------hhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            00  000000  000    0000               001111111112233334566665567888999999999999


Q ss_pred             HHHhcCCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE--------ECC-eeEEEEEecCCC
Q psy3048         266 ADLVEKDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS--------FQG-RPFLRFVVTSPE  331 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------~~~-~~~lRi~~~~~~  331 (367)
                      .+.|++++|+++..++     ..+++.|.+++  ....++.+.|.++|+ .+.+..        ..+ ..++|+++ ..+
T Consensus       318 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~g~~~~iRis~-~~~  393 (420)
T 1t3i_A          318 WQGLGQIPQLRLYGPNPKHGDRAALASFNVAG--LHASDVATMVDQDGI-AIRSGHHCTQPLHRLFDASGSARASL-YFY  393 (420)
T ss_dssp             HHHHHTCTTEEEESCCGGGSCBCSEEEEEETT--BCHHHHHHHHHTTTE-ECBCSCTTCHHHHHHTTCCCCEEEEC-CTT
T ss_pred             HHHHHhCCCeEEeCCCccccccCCEEEEEECC--CCHHHHHHHHHHCCe-EEeeccccchHHHHhcCCCCeEEEec-CCC
Confidence            9999999899988764     36778887753  235678888888884 443321        112 56899975 567


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhC
Q psy3048         332 TNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~~  353 (367)
                      ++++|+++++++|+++++++.+
T Consensus       394 ~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          394 NTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999887643

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.92  E-value=3.8e-23  Score=196.62  Aligned_cols=262  Identities=11%  Similarity=0.041  Sum_probs=185.9

Q ss_pred             ceEEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|.++..++..   .|++++.+++++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.
T Consensus        88 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~  161 (382)
T 4eb5_A           88 GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDT------ILVSVQHANNEIGTIQPVEEIS  161 (382)
T ss_dssp             CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTE------EEEECCSBCTTTCBBCCHHHHH
T ss_pred             CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCC------eEEEEeccCCCccccCCHHHHH
Confidence            34677888999999887764   69999999998889999999999987543      5888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|++||++ ++|++|+.+....+. ..  .   ..|+++.++||+ ++|.|+|++++++...+.       .++.....
T Consensus       162 ~l~~~~~~~-i~D~a~~~g~~~~~~-~~--~---~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~-------~~~~~~~~  226 (382)
T 4eb5_A          162 EVLAGKAAL-HIDATASVGQIEVDV-EK--I---GADMLTISSNDI-YGPKGVGALWIRKEAKLQ-------PVILGGGQ  226 (382)
T ss_dssp             HHHTTSSEE-EEECTTTBTTBCCCH-HH--H---TCSEEEEETGGG-TCCSSCEEEEEETTCCCC-------CSSCSSCT
T ss_pred             HHHHHCCCE-EEEcchhcCCcccCc-cc--c---CCCEEEeehHHh-cCCCceEEEEEccccccC-------ceecCCCc
Confidence            999999999 999999865433221 11  1   249999999998 557899999986542111       11111000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           .                               ..+............+.++++.+ .++++++.++..++++++.
T Consensus       227 -----~-------------------------------~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~  269 (382)
T 4eb5_A          227 -----E-------------------------------NGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRII  269 (382)
T ss_dssp             -----G-------------------------------GGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             -----c-------------------------------ccccCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence                 0                               00000000101123444555543 3478889999999999999


Q ss_pred             HHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--------------------CCeeEE
Q psy3048         267 DLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--------------------QGRPFL  323 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------------~~~~~l  323 (367)
                      +.|++++|+++..++.   .+.+.|++++  ....++.+.|.++|+. +.++..                    .+..++
T Consensus       270 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (382)
T 4eb5_A          270 DNVLKIEESYLNGHPEKRLPNNVNVRFSY--IEGESIVLSLDMAGIQ-ASTGSACSSKTLQPSHVLMACGLKHEEAHGTL  346 (382)
T ss_dssp             HHHTTSTTEEECSCSSSBCTTEEEEEETT--SCHHHHHHHHHHHTCB-CBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEE
T ss_pred             HHHhhCCCeEEeCCcccCCCCEEEEEeCC--cCHHHHHHHHHHCCEE-EeccccccCCCCcccHHHHHcCCChhccCCeE
Confidence            9999998998876532   4577888763  2356788888888854 333211                    013589


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      |+++ ...++++|+++++++|+++++++.+
T Consensus       347 Ri~~-~~~~~~~~i~~~~~~l~~~~~~~~~  375 (382)
T 4eb5_A          347 LLTL-GRYNTDEDVDRLLEVLPGVIERLRS  375 (382)
T ss_dssp             EEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9975 5678899999999999999888764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.92  E-value=1.8e-23  Score=199.80  Aligned_cols=278  Identities=12%  Similarity=-0.002  Sum_probs=188.3

Q ss_pred             eEEEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      -.|++++.+|++.  ...++..|++++.++.++++.+|+++|++++++..    .+.+|++++++|++|.+.|+++|.++
T Consensus        84 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l  159 (392)
T 2z9v_A           84 DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHP----EITVVSVCHHDTPSGTINPIDAIGAL  159 (392)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCT----TCCEEEEESEEGGGTEECCHHHHHHH
T ss_pred             CEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCC----CCcEEEEeccCCCCceeccHHHHHHH
Confidence            4566677889875  33445579999999998888899999999996421    13578899999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC--c--cccccC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD--R--VYLKHT  184 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~--~--~yl~~~  184 (367)
                      |++||+++++|++|+.+....+. ..  .   .+|++++++|||+++|.|+|+++++++ .+.......  +  .|....
T Consensus       160 ~~~~~~~li~D~a~~~g~~~~~~-~~--~---~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~  232 (392)
T 2z9v_A          160 VSAHGAYLIVDAVSSFGGMKTHP-ED--C---KADIYVTGPNKCLGAPPGLTMMGVSER-AWAKMKANPLAPRASMLSIV  232 (392)
T ss_dssp             HHHTTCEEEEECTTTBTTBSCCG-GG--G---TCSEEEECSSSTTCCCSCCEEEEECHH-HHHHHHTCTTSCCSSTTCSG
T ss_pred             HHHcCCeEEEEcccccCCccccc-cc--c---cceEEEecCcccccCCCceeEEEECHH-HHHHhhhccCCCCceeccHH
Confidence            99999999999999865443221 11  1   249999999999999999999998643 232221100  0  111000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..     ...+                     ..     ..............++.++++.+...|++++.++..+++++
T Consensus       233 ~~-----~~~~---------------------~~-----~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  281 (392)
T 2z9v_A          233 DW-----ENAW---------------------SR-----DKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKA  281 (392)
T ss_dssp             GG-----TTTT---------------------ST-----TSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HH-----Hhhh---------------------cc-----cCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            00     0000                     00     00000001111223455666666666788899999999999


Q ss_pred             HHHHhcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH
Q psy3048         265 FADLVEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.|+++ |+++..++    ..+++.|+++. .....++.+.|.++ |+ .+.+.. ..+..++|+++..++++++|++
T Consensus       282 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gi-~v~~g~~~~~~~~lRi~~~~~~~~~~~i~  358 (392)
T 2z9v_A          282 MRAGVTAM-GLSVWAASDSIASPTTTAVRTPD-GVDEKALRQAARARYGV-VFSSGRGETLGKLTRIGHMGPTAQPIYAI  358 (392)
T ss_dssp             HHHHHHHT-TCCBSSSSGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCE-ECEECCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred             HHHHHHHc-CCeeccCCccccCCceEEEECCC-CCCHHHHHHHHHhcCCE-EEecCCCCCCCCeEEEeCcccccCHHHHH
Confidence            99999987 88876533    35667787752 22356888899887 74 343322 1235689996433377899999


Q ss_pred             HHHHHHHHHHHHhhC
Q psy3048         339 FAWNEISHQSSEMNL  353 (367)
Q Consensus       339 ~li~~l~~~~~~~~~  353 (367)
                      +++++|+++++++..
T Consensus       359 ~~~~~l~~~~~~~~~  373 (392)
T 2z9v_A          359 AALTALGGAMNAAGR  373 (392)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999887654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.91  E-value=6.7e-24  Score=200.21  Aligned_cols=269  Identities=10%  Similarity=0.000  Sum_probs=183.4

Q ss_pred             EEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          32 VAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        32 ~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .+++....|++  +...++..|++++.++.++++.+|+++|+  +++.+      .+|++++++|++|.+.|+++|.++|
T Consensus        85 ~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~------~~v~~~~~~nptG~~~~l~~i~~la  156 (362)
T 3ffr_A           85 KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADA------EIICLTHNETSSGVSMPVEDINTFR  156 (362)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTC------CEEEEESEETTTTEECCHHHHTTSG
T ss_pred             cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCc------cEEEEEcCCCCcceeCCHHHHHHHH
Confidence            44445566777  34456678999999999888999999998  43333      5888899999999999999999999


Q ss_pred             hhc-CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         110 QEY-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~-gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ++| |+++++|++|+.+....+        ...+|++++++|||+++|+|+|+++.++. .+.+......   +.+..  
T Consensus       157 ~~~p~~~li~D~a~~~~~~~~~--------~~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~~~~~~~~~---gg~~~--  222 (362)
T 3ffr_A          157 DKNKDALIFVDAVSSLPYPKFD--------WTKIDSVFFSVQKCFGLPAGLGVWILNDR-VIEKSKALLA---KRKSI--  222 (362)
T ss_dssp             GGSTTSEEEEECTTTTTSSCCC--------TTSCSEEEEETTSTTCCCSCCEEEEEEHH-HHHHHHHHHH---TTCCC--
T ss_pred             HhCCCCEEEEecccccCCcccC--------hhHCcEEEEecccccCCCCceEEEEECHH-HHHHhhhccc---cCCCC--
Confidence            999 999999999986654322        22269999999999998999999887643 2222211000   00000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                       ....++  ..+...        .+..          ........+....+..+++.+..+|++++.++..++++++.+.
T Consensus       223 -~~~~~~--~~~~~~--------~~~~----------~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  281 (362)
T 3ffr_A          223 -GTYHTI--PSMLEK--------ARVN----------QTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTY  281 (362)
T ss_dssp             -CSTTSH--HHHHHH--------HTTT----------CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccH--HHHHHH--------hhcC----------CCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence             000000  000000        0000          0000111122345556666666677899999999999999999


Q ss_pred             hcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       269 L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      |+++||+++..++    ...+++|.+++   ...++.++|.++|+ .+.++ ...+..++|+++ +..++++|+++++++
T Consensus       282 L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi-~~~~g~~~~~~~~iRis~-~~~~~~e~i~~l~~~  356 (362)
T 3ffr_A          282 IESSKVFSFGVEDAKLRSMTTIVANTTM---LPGEINKILEPFDM-AVGAGYGSKKETQIRIAN-FPAHSLEQVHKLVQT  356 (362)
T ss_dssp             HHHCSSEEESSSCGGGBCSSEEEEEESS---CHHHHHHHHGGGTE-EEEECSGGGTTTEEEEEC-CTTSCHHHHHHHHHH
T ss_pred             HHHccCceeccCChhhcCCceEEEecCC---CHHHHHHHHHHCCe-EEecCccccCCCEEEEEC-CCCCCHHHHHHHHHH
Confidence            9999999987632    34677787764   46789999999974 44432 222456899976 567899999999999


Q ss_pred             HHHHH
Q psy3048         344 ISHQS  348 (367)
Q Consensus       344 l~~~~  348 (367)
                      |+++.
T Consensus       357 l~~~~  361 (362)
T 3ffr_A          357 LKEKI  361 (362)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98863

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.91  E-value=1.5e-22  Score=195.52  Aligned_cols=263  Identities=13%  Similarity=0.147  Sum_probs=185.0

Q ss_pred             ceEEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|++++.+|.++..++..   .|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.
T Consensus       113 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~  186 (423)
T 3lvm_A          113 GKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDT------ILVSIMHVNNEIGVVQDIAAIG  186 (423)
T ss_dssp             CCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTE------EEEECCSBCTTTCBBCCHHHHH
T ss_pred             CCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCc------EEEEEeCCCCCCccccCHHHHH
Confidence            45677888999999888744   59999999998889999999999997654      5888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|++||+++++|++|+.+....+..     .. ..|++++++||+ .+|.|+|++++++.. ....    ..+......
T Consensus       187 ~l~~~~~~~li~Dea~~~~~~~~~~~-----~~-~~di~~~s~sK~-~g~~g~G~~~~~~~~-~~~~----~~~~~~~~~  254 (423)
T 3lvm_A          187 EMCRARGIIYHVDATQSVGKLPIDLS-----QL-KVDLMSFSGHKI-YGPKGIGALYVRRKP-RVRI----EAQMHGGGH  254 (423)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSCCCTT-----TS-CCSEEEEESTTT-TSCSSCEEEEECBTT-BCCC----CCSSCSSCT
T ss_pred             HHHHHcCCEEEEEhhhhcCCCCcChh-----hc-CCCEEEechHHh-cCCCCeEEEEEeccc-cCCC----CccccCCcc
Confidence            99999999999999998765533211     11 359999999995 567789999986432 1110    111111000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                           .                               ..+...........++.+++..+. +.++++.++..++++++.
T Consensus       255 -----~-------------------------------~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~  297 (423)
T 3lvm_A          255 -----E-------------------------------RGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLW  297 (423)
T ss_dssp             -----T-------------------------------TTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             -----c-------------------------------ccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence                 0                               000000011112233444555443 337888999999999999


Q ss_pred             HHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-C-------------------CeeEE
Q psy3048         267 DLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-Q-------------------GRPFL  323 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~-------------------~~~~l  323 (367)
                      +.|++++|+++..++.   .+.+.|.+.+  ....++.+.|.+   +.+.++.. .                   ...++
T Consensus       298 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  372 (423)
T 3lvm_A          298 NGIKDIEEVYLNGDLEHGAPNILNVSFNY--VEGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSI  372 (423)
T ss_dssp             HHHTTSTTEEEESCSTTBCTTEEEEEETT--SCHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEE
T ss_pred             HHHhcCCCEEEeCCccccCCCeEEEEeCC--CCHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceE
Confidence            9999999999887543   3577787754  235677777765   33322211 0                   03689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      |+++ ...++++|+++++++|+++++++.+
T Consensus       373 Ri~~-~~~~t~e~i~~~~~~l~~~~~~~~~  401 (423)
T 3lvm_A          373 RFSL-GRFTTEEEIDYTIELVRKSIGRLRD  401 (423)
T ss_dssp             EEEC-CTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEC-CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            9976 5778899999999999999988764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.91  E-value=3.1e-23  Score=198.31  Aligned_cols=273  Identities=15%  Similarity=0.057  Sum_probs=187.8

Q ss_pred             ceEEEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +-.|++++.+|.+  +...++..|++++.++.+.++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus       109 gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~l~~i~  182 (393)
T 1vjo_A          109 GDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRP------AILALVHAETSTGARQPLEGVG  182 (393)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCC------SEEEEESEETTTTEECCCTTHH
T ss_pred             CCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCc------eEEEEeccCCCcceeccHHHHH
Confidence            3466777789998  8888888999999999988889999999999987 44      4788899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC---Ccccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT---DRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~---~~~yl~~  183 (367)
                      ++|++||+++++|++|+.+..+.+     +.. ..+|+++.++||++++|.|+|+++++++ ........   ..++...
T Consensus       183 ~l~~~~~~~li~Dea~~~g~~~~~-----~~~-~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~  255 (393)
T 1vjo_A          183 ELCREFGTLLLVDTVTSLGGVPIF-----LDA-WGVDLAYSCSQKGLGCSPGASPFTMSSR-AIEKLQRRRTKVANWYLD  255 (393)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSCCC-----TTT-TTCSEEECCSSSTTCSCSSCEEEEECHH-HHHHHHTCSSCCSCSTTC
T ss_pred             HHHHHcCCEEEEECCccccCcCCc-----ccc-cCccEEEEcCcccccCCCceEEEEECHH-HHHHHhccCCCCCceecC
Confidence            999999999999999985433221     111 1359999999999999999999998653 23221110   0011000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .              .|...       +...         ..+...........++..+++.+..++++++.++..++++
T Consensus       256 ~--------------~~~~~-------~~~~---------~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  305 (393)
T 1vjo_A          256 M--------------NLLGK-------YWGS---------ERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVE  305 (393)
T ss_dssp             H--------------HHHHH-------HHST---------TCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             c--------------Hhhhh-------hhcc---------CCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            0              00000       0000         0000001111233455566666556678899999999999


Q ss_pred             HHHHHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|+++ |+++..++.   .+++.|+++. .....++.+.|.++ |+ .+.++. ..+..++|+++....+++++++
T Consensus       306 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~iRis~~~~~~~~~~i~  382 (393)
T 1vjo_A          306 YLWERLEDI-GLSLHVEKEYRLPTLTTVCIPD-GVDGKAVARRLLNEHNI-EVGGGLGELAGKVWRVGLMGFNSRKESVD  382 (393)
T ss_dssp             HHHHHHHHT-TCCBSSCGGGBCSSEEEEECCT-TCCHHHHHHHHHHHHCE-ECEECCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred             HHHHHHHHc-CCcccCCccccCCcEEEEEcCC-CCCHHHHHHHHHhhCCE-EEecCccccCCCEEEEeCCccCChHHHHH
Confidence            999999988 887765432   3567777643 22356888999888 74 443332 2235689997444456788899


Q ss_pred             HHHHHHHHHH
Q psy3048         339 FAWNEISHQS  348 (367)
Q Consensus       339 ~li~~l~~~~  348 (367)
                      +++++|++++
T Consensus       383 ~~~~~l~~~l  392 (393)
T 1vjo_A          383 QLIPALEQVL  392 (393)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.91  E-value=5.7e-23  Score=196.59  Aligned_cols=281  Identities=12%  Similarity=0.059  Sum_probs=187.7

Q ss_pred             eEEEecCCcchhHH--HHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          31 LVAYASDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~--~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      -.|++++.+|.+..  ..++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.+
T Consensus        94 d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~i~~  167 (396)
T 2ch1_A           94 DRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQP------KCLFLTHGDSSSGLLQPLEGVGQ  167 (396)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCC------SEEEEESEETTTTEECCCTTHHH
T ss_pred             CeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCC------CEEEEECCCCCCceecCHHHHHH
Confidence            35666778898874  46778899999999988889999999999987 34      47888999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC---CccccccC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT---DRVYLKHT  184 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~---~~~yl~~~  184 (367)
                      +|++||+++++|++|+.+....+     +... .+|+++.++||++++|.|+|++++++ ..+......   ..++....
T Consensus       168 l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~  240 (396)
T 2ch1_A          168 ICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPGITPISISP-KALDVIRNRRTKSKVFYWDL  240 (396)
T ss_dssp             HHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCH
T ss_pred             HHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCCeEEEEECH-HHHHhhhhccCcccceEech
Confidence            99999999999999985533221     1111 25999999999999999999988865 333322111   01111100


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      .             .|...        +...  ..    ..+...........++.++++.+..++++++.++..+++++
T Consensus       241 ~-------------~~~~~--------~~~~--~~----~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  293 (396)
T 2ch1_A          241 L-------------LLGNY--------WGCY--DE----PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI  293 (396)
T ss_dssp             H-------------HHHHH--------TTCS--SS----CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             H-------------HHHHh--------hhhh--cc----cCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            0             00000        0000  00    00000011112224455566665567788999999999999


Q ss_pred             HHHHhcCCCCeEEeCCCC---c-eeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPS---M-GLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~---~-~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.|+++ |++++.++.   . .++.|+++. .....++.++|.++ |+. +.++. .....++|++++...++++|++
T Consensus       294 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~gi~-v~~g~~~~~~~~iRi~~~~~~~~~e~i~  370 (396)
T 2ch1_A          294 LYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK-GVDWWKVSQYAMNNFSLE-VQGGLGPTFGKAWRVGIMGECSTVQKIQ  370 (396)
T ss_dssp             HHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCBC-CBCCCGGGTTTEEEEECCGGGCSHHHHH
T ss_pred             HHHHHHHC-CCeeccCCccccCCceEEEEcCC-CCCHHHHHHHHHHhCCEE-EecCccccCCCEEEEECCCCcCCHHHHH
Confidence            99999988 887765432   1 367777752 22356888888876 743 33221 1234689997633456899999


Q ss_pred             HHHHHHHHHHHHhhCC
Q psy3048         339 FAWNEISHQSSEMNLP  354 (367)
Q Consensus       339 ~li~~l~~~~~~~~~~  354 (367)
                      +++++|+++++++...
T Consensus       371 ~~~~~l~~~l~~~~~~  386 (396)
T 2ch1_A          371 FYLYGFKESLKATHPD  386 (396)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999999887544

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.90  E-value=9.3e-23  Score=194.43  Aligned_cols=276  Identities=14%  Similarity=0.132  Sum_probs=186.4

Q ss_pred             CceEEEecCCcchhHHHH----HHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCCh
Q psy3048          29 SRLVAYASDQSNSSVEKS----AIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      ++-.|++++.+|.+...+    ++..|++++.++.+  +++.+|+++|++++++.+      .+|++++++|++|.+.|+
T Consensus       100 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~  173 (390)
T 1elu_A          100 QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT------RLVILSHLLWNTGQVLPL  173 (390)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE------EEEEEESBCTTTCCBCCH
T ss_pred             CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCc------eEEEEeccccCCceecCH
Confidence            345677788999996654    46679999999986  578899999999987544      588899999999999999


Q ss_pred             hhHHHHHh----hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCc
Q psy3048         103 EELGPICQ----EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       103 ~~I~~l~~----~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      ++|.++|+    +||+++++|++|+.+....+.     .. ...|+++.++|||+++|.|+|+++++++ ..........
T Consensus       174 ~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~-----~~-~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~~~~~~  246 (390)
T 1elu_A          174 AEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF-----SR-LEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGEINPTYV  246 (390)
T ss_dssp             HHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT-----TT-SCCSEEEEESSSTTCCCTTCEEEEECTT-TGGGCCCCSC
T ss_pred             HHHHHHHhhhhhhcCcEEEEEcccccCCcCCCh-----hh-cCCCEEEccccccccCCCceEEEEECHH-hHhhcCCccc
Confidence            99999999    999999999999865433211     11 1359999999999999999999998643 2322111000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRK  257 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~  257 (367)
                      .+......   .....|               .+.  .  ..   ..+...........++.++++.+...+ ++++.++
T Consensus       247 g~~~~~~~---~~~~~~---------------~~~--~--~~---~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~  301 (390)
T 1elu_A          247 GWRSITYG---AKGEPT---------------GWA--E--GG---KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA  301 (390)
T ss_dssp             CTTTEEEC---TTSCEE---------------EEC--S--GG---GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cCCccccc---ccCccc---------------ccc--c--ch---HhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            00000000   000000               000  0  00   001100111122244455666655555 8889999


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         258 HISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      ..++++++.+.|++++|++++.|  +..+++.|+++. +....++.++|.++|+ .+.+..  ++.++|+++ +..++++
T Consensus       302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~~~--~~~~iRis~-~~~~~~~  376 (390)
T 1elu_A          302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDS-PLGHRAIVQKLEEQRI-YLRTIA--DPDCIRACC-HYITDEE  376 (390)
T ss_dssp             HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECS-SSCHHHHHHHHHHTTE-ECEEET--TTTEEEEEC-CTTCCHH
T ss_pred             HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCC-CCCHHHHHHHHHHCCE-EEEecC--CCCeEEEec-ccCCCHH
Confidence            99999999999999889998764  356778888753 2235688899988874 443332  446899975 5678899


Q ss_pred             HHHHHHHHHHHH
Q psy3048         336 DVAFAWNEISHQ  347 (367)
Q Consensus       336 did~li~~l~~~  347 (367)
                      |+++++++|+++
T Consensus       377 ~i~~~~~~l~~~  388 (390)
T 1elu_A          377 EINHLLARLADF  388 (390)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.90  E-value=4e-22  Score=189.48  Aligned_cols=262  Identities=14%  Similarity=0.153  Sum_probs=181.4

Q ss_pred             ceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .-.|++++.+|.++...+   +..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.
T Consensus        89 gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~i~  162 (384)
T 1eg5_A           89 KRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDT------FLVSIMAANNEVGTIQPVEDVT  162 (384)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTE------EEEEEESBCTTTCBBCCHHHHH
T ss_pred             CCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCC------eEEEEECCCCCcccccCHHHHH
Confidence            346777889999987766   5689999999998889999999999987644      5788899999999999999999


Q ss_pred             HHHhhcC--cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~g--i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++||  +++++|++|+.+....+     +... ..|++++++||++ +|+|+|++++++...+.      + .+...
T Consensus       163 ~l~~~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~sK~~-g~~G~G~~~~~~~~~~~------~-~~~~~  228 (384)
T 1eg5_A          163 RIVKKKNKETLVHVDAVQTIGKIPFS-----LEKL-EVDYASFSAHKFH-GPKGVGITYIRKGVPIR------P-LIHGG  228 (384)
T ss_dssp             HHHHHHCTTCEEEEECTTTTTTSCCC-----CTTT-CCSEEEEEGGGGT-SCTTCEEEEECTTSCCC------C-SBCSS
T ss_pred             HHHHhcCCceEEEEEhhhhcCCcccC-----chhc-CCCEEEecHHHhc-CCCceEEEEEcCCCccc------c-ccccC
Confidence            9999999  99999999974433211     1111 3599999999984 57789998886531011      1 11110


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..     ...+                               ............+..+++.. .+++++..++..+++++
T Consensus       229 ~~-----~~~~-------------------------------~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~  271 (384)
T 1eg5_A          229 GQ-----ERGL-------------------------------RSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSK  271 (384)
T ss_dssp             CT-----TTTT-------------------------------BCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHH
T ss_pred             cc-----cccc-------------------------------cCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Confidence            00     0000                               00001111223344455542 35678889999999999


Q ss_pred             HHHHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-EC-------------------Cee
Q psy3048         265 FADLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQ-------------------GRP  321 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~-------------------~~~  321 (367)
                      +.+.|++ +|+++..++   ....+.|.+++.  ...++.+.|.++|+ .+.++. +.                   +..
T Consensus       272 l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi-~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  347 (384)
T 1eg5_A          272 LVSGLMN-LGAHIITPLEISLPNTLSVSFPNI--RGSTLQNLLSGYGI-YVSTSSACTSKDERLRHVLDAMGVDRRIAQG  347 (384)
T ss_dssp             HHHHHHT-TTCEECSCTTSBCTTEEEEECTTC--CHHHHHHHHHHTTE-ECBC------------CHHHHTTCCHHHHHH
T ss_pred             HHHHhCC-CCeEEeCCcccCCCCEEEEEeCCC--CHHHHHHHHhhCCe-EEeccccccCCCCcchHHHHHcCCChhhcCC
Confidence            9999998 689887653   235677777532  25678888888874 333321 11                   136


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      ++|+++ ..+++++|+++++++|+++++++..
T Consensus       348 ~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          348 AIRISL-CKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             EEEEEC-CTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            899975 5678999999999999999887643

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.90  E-value=5.2e-23  Score=193.46  Aligned_cols=268  Identities=14%  Similarity=0.006  Sum_probs=183.0

Q ss_pred             ceEEEecCCcchhHH--HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~--~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .-.|++++.+|++..  ..++..|++++.++.++++.+|+++|++   +.      +.+|++++++|++|.+.|+++|.+
T Consensus        75 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~------~~~v~~~~~~nptG~~~~l~~i~~  145 (352)
T 1iug_A           75 GERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---EG------YAGLLLVHSETSTGALADLPALAR  145 (352)
T ss_dssp             TCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SS------CSEEEEESEETTTTEECCHHHHHH
T ss_pred             CCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cC------CcEEEEEEecCCcceecCHHHHHH
Confidence            346777788999965  4445589999999998888899999887   22      347888999999999999999999


Q ss_pred             HHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|++|  |+++++|++|+.+....+. ..  .   .+|++++++|||+++|.|+|+++++++ .+... .. ..+.    
T Consensus       146 l~~~~~~~~~li~D~a~~~~~~~~~~-~~--~---~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~~-~~-~~~~----  212 (352)
T 1iug_A          146 AFKEKNPEGLVGADMVTSLLVGEVAL-EA--M---GVDAAASGSQKGLMCPPGLGFVALSPR-ALERL-KP-RGYY----  212 (352)
T ss_dssp             HHHHHCTTCEEEEECTTTBTTBCCCS-GG--G---TCSEEEEESSSTTCCCSCEEEEEECHH-HHHTC-CC-CSST----
T ss_pred             HHHhhCCCCEEEEECCccccCcceec-cc--c---CeeEEEecCcccccCCCceeEEEECHH-HHHHh-hC-CCce----
Confidence            99999  9999999999865443221 10  1   259999999999999999999998543 23221 10 0000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                             .++  ..+...        ......++          ........++.++++.+... ++++.++..++++++
T Consensus       213 -------~~~--~~~~~~--------~~~~~~~~----------~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l  264 (352)
T 1iug_A          213 -------LDL--ARELKA--------QKEGESAW----------TPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALL  264 (352)
T ss_dssp             -------TCH--HHHHHH--------HTTTCCSS----------CCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHH
T ss_pred             -------eeH--HHHHhh--------cccCCCCC----------CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence                   000  000000        00000000          00111123444556554444 788889999999999


Q ss_pred             HHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .+.|+++ |+++..++ ..+++.|+++. .....++.++|.++|+ .+.+... .+..++|+++ ...++++|+++++++
T Consensus       265 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~  340 (352)
T 1iug_A          265 YGVGEEG-GLRPVPKRFSPAVAAFYLPE-GVPYARVKEAFAQRGA-VIAGGQGPLKGKVFRLSL-MGAYDRYEALGVAGM  340 (352)
T ss_dssp             HHHHHHT-TCEESCSSBCTTCEEEECCT-TCCHHHHHHHHHTTTE-ECEECCGGGTTTEEEECC-CSSCCHHHHHHHHHH
T ss_pred             HHHHHHC-CCcccccccCCeEEEEEcCC-CCCHHHHHHHHHHCCE-EEEeCCCccCCCEEEEEc-cccCCHHHHHHHHHH
Confidence            9999988 88887654 55678888763 2235689999998884 4443321 1346899965 567789999999999


Q ss_pred             HHHHHHHh
Q psy3048         344 ISHQSSEM  351 (367)
Q Consensus       344 l~~~~~~~  351 (367)
                      |+++++++
T Consensus       341 l~~~~~~~  348 (352)
T 1iug_A          341 FREVLEEI  348 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998876

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.90  E-value=1e-22  Score=193.77  Aligned_cols=276  Identities=13%  Similarity=0.058  Sum_probs=182.4

Q ss_pred             ceEEEe-cCCcchhHHHHHHhCCcceEEEec-CCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYA-SDQSNSSVEKSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~-s~~~H~s~~~~~~~~g~~v~~v~~-~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +.+++. +...|.++...++..|++++.++. ++++.+|+++|++++++ .+      .+|++++++|++|.+.|+++|.
T Consensus        87 d~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~l~~i~  160 (385)
T 2bkw_A           87 KNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSY------GAVTVTHVDTSTAVLSDLKAIS  160 (385)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCC------SEEEEESEETTTTEECCHHHHH
T ss_pred             CeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCC------CEEEEEccCCCcCeEcCHHHHH
Confidence            444454 333445555677788999999999 78899999999999986 33      4788899999999999999999


Q ss_pred             HHHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhh-hhcc----CCcc
Q psy3048         107 PICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT-NTFF----TDRV  179 (367)
Q Consensus       107 ~l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~----~~~~  179 (367)
                      ++|++|  |+++++|++|+.+....+     +... .+|++++++|||+++|+|+|+++++++ .+. ....    ....
T Consensus       161 ~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~~~~~~~~~  233 (385)
T 2bkw_A          161 QAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFALTASQKAIGAPAGLSISLCSSR-FMDYALNDSKNGHVHG  233 (385)
T ss_dssp             HHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCHHHHCCCSC
T ss_pred             HHHHhhCCCCEEEEECccccCCcccc-----cccc-CceEEEecCccccccCCcceEEEEcHH-HHHHHHhhccCCCCCc
Confidence            999999  999999999986544322     1111 359999999999999999999988653 232 1100    0001


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      |...           .  ..|...    + ..+..+.        .............++.++++.+...+++++.++..
T Consensus       234 ~~~~-----------~--~~~~~~----~-~~~~~~~--------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  287 (385)
T 2bkw_A          234 YFSS-----------L--RRWTPI----M-ENYEAGK--------GAYFATPPVQLINSLDVALKEILEEGLHKRWDLHR  287 (385)
T ss_dssp             STTC-----------H--HHHHHH----H-HHHHTTC--------CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             eeec-----------H--HHHhhH----H-HhhhccC--------CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            1000           0  000000    0 0000000        00000011112244455666655567888899999


Q ss_pred             HHHHHHHHHh-cCCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--CCeeEEEEE-ec-C
Q psy3048         260 SLAKKFADLV-EKDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--QGRPFLRFV-VT-S  329 (367)
Q Consensus       260 ~la~~l~~~L-~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--~~~~~lRi~-~~-~  329 (367)
                      ++++++.+.| +++ |+++..++     ..+++.|++++    ..++.++|.++|+ .+.+...  .+..++|++ +. +
T Consensus       288 ~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi-~v~~g~~~~~~~~~iRis~~~~~  361 (385)
T 2bkw_A          288 EMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVT  361 (385)
T ss_dssp             HHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGG
T ss_pred             HHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC----HHHHHHHHHHCCe-EEeCCCCcccCCCEEEEEccccc
Confidence            9999999999 988 88887532     35677887753    5688888888874 4433322  135689997 42 2


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHH
Q psy3048         330 -PETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       330 -~~~~~edid~li~~l~~~~~~  350 (367)
                       ..++++|+++++++|++++++
T Consensus       362 ~~~~~~e~i~~~~~~l~~~~~~  383 (385)
T 2bkw_A          362 ACNKNLPYMKNCFDLIKLALQR  383 (385)
T ss_dssp             TSSTTCTHHHHHHHHHHHHTTC
T ss_pred             cccCCHHHHHHHHHHHHHHHHh
Confidence             246899999999999988654

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.90  E-value=8.6e-24  Score=200.93  Aligned_cols=259  Identities=11%  Similarity=-0.029  Sum_probs=178.9

Q ss_pred             EEecCCcchhH--HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          33 AYASDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        33 v~~s~~~H~s~--~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      |++..++|++.  .+.++..|..++.++.+.++..++++++.+++++++      +|++++.+|.+|++.|+     +|+
T Consensus       106 v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~------lV~~~h~et~tG~~~pi-----i~~  174 (377)
T 3e77_A          106 ADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDAS------YVYYCANETVHGVEFDF-----IPD  174 (377)
T ss_dssp             EEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCS------CEEEESEETTTTEECSS-----CCC
T ss_pred             EEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCcc------EEEEeCccCchheEchh-----hhc
Confidence            34445667764  334455688887778776677788888776666553      78899999999999999     588


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNT  190 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~  190 (367)
                      ++|++++||++++.+..+.+..        ..|++++++|||+ +|+|+|+++++++. +.+.....+.|+.        
T Consensus       175 ~~~~~~~vD~~q~~g~~~id~~--------~~~~~~~s~~K~~-gp~G~g~l~~~~~~-l~~~~~~~p~~~~--------  236 (377)
T 3e77_A          175 VKGAVLVCDMSSNFLSKPVDVS--------KFGVIFAGAQKNV-GSAGVTVVIVRDDL-LGFALRECPSVLE--------  236 (377)
T ss_dssp             CTTCCEEEECTTTTTSSCCCGG--------GCSEEEEEGGGTT-SCTTCEEEEEETTS-CSCCCTTSCGGGC--------
T ss_pred             cCCCEEEEEcccccCCCCCchh--------hcCEEEEeccccc-CCCccEEEEEcHHH-HhhccCCCCchhh--------
Confidence            9999999999999988776532        2267899999999 69999999997643 2221111112210        


Q ss_pred             CCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHh
Q psy3048         191 QSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L  269 (367)
                               |...        .+....++|          .+-+..+++.++++.+..+ |++++.++..++++++++.|
T Consensus       237 ---------~~~~--------~~~~~~~~T----------p~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L  289 (377)
T 3e77_A          237 ---------YKVQ--------AGNSSLYNT----------PPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEII  289 (377)
T ss_dssp             ---------HHHH--------HTTTTCSSC----------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HHHH--------hhcCCCCCC----------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence                     1000        000001111          1112346677888888788 89999999999999999999


Q ss_pred             cCCCCeEEeC-CC--Cce-eEEEEEcCC---chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         270 EKDDRFELVC-PP--SMG-LVCFRLKGD---NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       270 ~~~~g~~~~~-~~--~~~-~v~f~~~~~---~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++++|+.+.. ++  .++ +++|.+++.   ......+.+.+.++|+. +.++ +...+.+|+|+ ..++|++|||++++
T Consensus       290 ~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~-~~~g-~~~~g~iRiS~-~~~~t~edId~l~~  366 (377)
T 3e77_A          290 DNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNML-SLKG-HRSVGGIRASL-YNAVTIEDVQKLAA  366 (377)
T ss_dssp             HTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEE-SCBC-CTTTCSEEEEC-CTTSCHHHHHHHHH
T ss_pred             HhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcE-EeCC-CCcCCEEEEEC-CCCCCHHHHHHHHH
Confidence            9999998643 22  344 589998752   22335677777778743 3222 22234699976 68999999999999


Q ss_pred             HHHHHHHH
Q psy3048         343 EISHQSSE  350 (367)
Q Consensus       343 ~l~~~~~~  350 (367)
                      +|+++.++
T Consensus       367 al~~~~~~  374 (377)
T 3e77_A          367 FMKKFLEM  374 (377)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.90  E-value=1.2e-22  Score=193.03  Aligned_cols=271  Identities=15%  Similarity=0.130  Sum_probs=180.5

Q ss_pred             ceEEEecCCcchhHH--HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~--~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.+|+ ++..+++..  ..+...|++++.++.+.++.+|+++|++++++++      .+|++++++|++|.+.|+++|.+
T Consensus        96 d~vi~-~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~------~~v~~~~~~nptG~~~~l~~i~~  168 (376)
T 3f0h_A           96 DKVLV-IDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNF------TGLLVNVDETSTAVLYDTMMIGE  168 (376)
T ss_dssp             CCEEE-EESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCC------CEEEEESEETTTTEECCHHHHHH
T ss_pred             CeEEE-EeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCc------eEEEEecccCCcceecCHHHHHH
Confidence            44444 444455532  3466679999999998889999999998775544      47888989999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~  186 (367)
                      +|++||+++++|++|+.+....+...   .+   +|++++++||++++|+|+|+++.+++ ........ ...+..    
T Consensus       169 l~~~~~~~li~D~~~~~~~~~~~~~~---~~---~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~----  237 (376)
T 3f0h_A          169 FCKKNNMFFVCDCVSAFLADPFNMNE---CG---ADVMITGSQKVLACPPGISVIVLAPR-GVERVEKSKVRTMYF----  237 (376)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHH---HT---CSEEEEETTTTTCCCSSCEEEEECHH-HHHHHHTCCCCCSTT----
T ss_pred             HHHHcCCEEEEEcCccccCccccccc---cC---ccEEEecCcccccCCCceEEEEECHH-HHHHhhcCCCCceee----
Confidence            99999999999999987665432111   13   39999999999998999999887543 33222111 111100    


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l  265 (367)
                             ++  ..|....           ...+    ..++   .......++.+++..+... +++++.++..++++++
T Consensus       238 -------~~--~~~~~~~-----------~~~~----~~~~---~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l  290 (376)
T 3f0h_A          238 -------DL--KDALKNQ-----------ERGQ----TPFT---PAVGILLQINERLKEIKKHGGADAEVARIASQAADF  290 (376)
T ss_dssp             -------CH--HHHHHHH-----------TTTC----CSSC---CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             -------cH--HHHHhhc-----------ccCC----CCCC---CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                   00  0000000           0000    0000   0001124455667666666 7899999999999999


Q ss_pred             HHHhcCCCCeEEeCCCCc-eeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSM-GLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~-~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .+.|+++ ++++..++.. .++.+...  .....++.++|.++ |+ .+.++. ..+..++|+++ ...++++|++++++
T Consensus       291 ~~~L~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~gi-~v~~g~~~~~~~~lRis~-~~~~t~e~i~~~~~  365 (376)
T 3f0h_A          291 RAKIKDL-PFELVSESPANGVTSVHPT--TANAYDIFLKLKDEYGI-WICPNGGEMKDTIFRVGH-IGALTHEDNTTLVN  365 (376)
T ss_dssp             HHHTTTS-SEEECCSSBBTTEEEEEES--SSCHHHHHHHHHHHSSE-ECEECCGGGTTTCEEEEC-CSSCCHHHHHHHHH
T ss_pred             HHHHHHc-CCccCccccCceEEEEeCC--CCCHHHHHHHHHHhCCE-EEecCccccCCCEEEEec-CCCCCHHHHHHHHH
Confidence            9999997 7877654433 34444432  23367899999988 74 444331 12346899965 56789999999999


Q ss_pred             HHHHHHHH
Q psy3048         343 EISHQSSE  350 (367)
Q Consensus       343 ~l~~~~~~  350 (367)
                      +|++++++
T Consensus       366 ~l~~~l~~  373 (376)
T 3f0h_A          366 AFKDLQKR  373 (376)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998763

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.90  E-value=2.6e-22  Score=192.72  Aligned_cols=261  Identities=10%  Similarity=0.045  Sum_probs=178.2

Q ss_pred             ceEEEecCCcchhHHHHHHh----CCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAII----GDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .-.|++++.+|.+...++..    .|++++.++.+ +++.+|+++|++++++.+      .+|++++++|++|.+.|+++
T Consensus       113 gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~l~~  186 (406)
T 3cai_A          113 GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKST------RLVAVNSASGTLGGVTDLRA  186 (406)
T ss_dssp             TCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTE------EEEEEESBCTTTCBBCCCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCc------eEEEEeCCcCCccccCCHHH
Confidence            34677788999987665543    69999999987 678999999999986544      58889999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce-eEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS-AMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g-~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      |.++|++||+++++|++|+.+....+...   .+   .|++++++||+++ |. +| ++++++ .......... .+...
T Consensus       187 i~~l~~~~~~~li~D~a~~~g~~~~~~~~---~~---~d~~~~s~~K~~g-~~-~G~~~~~~~-~~~~~l~~~~-~~~~~  256 (406)
T 3cai_A          187 MTKLVHDVGALVVVDHSAAAPYRLLDIRE---TD---ADVVTVNAHAWGG-PP-IGAMVFRDP-SVMNSFGSVS-TNPYA  256 (406)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTCCCCHHH---HC---CSEEEEEGGGGTS-CS-CEEEEESCH-HHHHTSCCCC-SCTTC
T ss_pred             HHHHHHHcCCEEEEEcccccCCCCCCchh---cC---CCEEEeehhhhcC-CC-cCeEEEEeh-HHHhhcCCcc-cCCCC
Confidence            99999999999999999986654333111   13   4999999999864 64 77 777754 3332211110 00000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH--------------
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK--------------  249 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------  249 (367)
                      . .                     +               ..+...........++.++++.+...              
T Consensus       257 ~-~---------------------~---------------~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  299 (406)
T 3cai_A          257 T-G---------------------P---------------ARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAV  299 (406)
T ss_dssp             C-G---------------------G---------------GGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHH
T ss_pred             C-c---------------------c---------------ccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhh
Confidence            0 0                     0               00000000101112334445443322              


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCC--CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-------E---
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCPP--SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-------F---  317 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-------~---  317 (367)
                      +++++.++..++++++.+.|++++|+++..++  ..+++.|++++  ....++.+.|.++|+ .+.+..       .   
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gi-~v~~g~~~~~~~~~g~~  376 (406)
T 3cai_A          300 SMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHK--VPADRVVQRLADNGI-LAIANTGSRVLDVLGVN  376 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETT--BCHHHHHHHHHHTTE-ECEECCSCHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECC--cCHHHHHHHHHHCCc-EEecCChHHHHHHcCCC
Confidence            47888889999999999999999899887653  35678888764  235678888888874 444332       0   


Q ss_pred             CCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         318 QGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       318 ~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .+..++|+++ ..+++++|+++++++|+++
T Consensus       377 ~~~~~iRis~-~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          377 DVGGAVTVGL-AHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             TTTCCEEEEC-CTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEe-ecCCCHHHHHHHHHHHHHh
Confidence            1236899976 5778899999999999753

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.90  E-value=6e-23  Score=196.70  Aligned_cols=263  Identities=13%  Similarity=0.080  Sum_probs=163.3

Q ss_pred             EEEecCCcchhHHHHHHh---CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~---~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .|++++.+|.++...+..   .|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.++
T Consensus       111 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i~~l  184 (400)
T 3vax_A          111 HIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDT------LLVSLMHVNNETGVIQPVAELAQQ  184 (400)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTE------EEEECCSBCTTTCBBCCHHHHHHH
T ss_pred             EEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCc------eEEEEECCCCCceeeCcHHHHHHH
Confidence            778888999998777654   59999999998889999999999987654      589999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEE-EecchhhhhhccCCccccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMW-VKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~-~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      |++||+++++|++|+.+....+     ....  +|+++.++|| +++|.|+|+++ ++++.......... .++..... 
T Consensus       185 a~~~~~~li~D~a~~~~~~~~~-----~~~~--~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~-  254 (400)
T 3vax_A          185 LRATPTYLHVDAAQGYGKVPGD-----LTTP--IDMISISGHK-IGAPKGVGALVTRRREEMDDERVPLE-PIMFGGGQ-  254 (400)
T ss_dssp             HTTSSCEEEEECTTTTTTSGGG-----GGSC--CSEEEEETGG-GTSCSSCEEEEECBCSSSTTCBCCCC-CSSCSSCT-
T ss_pred             HHhcCCEEEEEhhhhcCCCCcC-----hhhc--CcEEEEeHHH-hCCCCceEEEEEecchhccccccccC-ceecCCCc-
Confidence            9999999999999986544322     1222  5999999999 55688999999 87632221000001 11110000 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                            .                             ..+...........++.++++.+ .++++++.++..++++++.+
T Consensus       255 ------~-----------------------------~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~  298 (400)
T 3vax_A          255 ------E-----------------------------RKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLA  298 (400)
T ss_dssp             ------G-----------------------------GGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHH
T ss_pred             ------e-----------------------------eeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence                  0                             00000000111123333444433 45788999999999999999


Q ss_pred             HhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEE-----EEEeEEC--------C------eeEEEE
Q psy3048         268 LVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIY-----IIKASFQ--------G------RPFLRF  325 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~-----~~~~~~~--------~------~~~lRi  325 (367)
                      .|+ .+|+++..++.   .+.+.|.+++.  ...++.+.|. +|+..     +......        +      ..++|+
T Consensus       299 ~L~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl  374 (400)
T 3vax_A          299 GLA-STSFQVNGDQDHVVPHILNLSFEDV--DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRF  374 (400)
T ss_dssp             HHT-TTTCEECSCTTSBCTTEEEEECTTC--CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEE
T ss_pred             hhC-CCCEEEeCCcccCCCCEEEEEeCCC--CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEE
Confidence            999 88999876543   35777877642  3567777777 66321     1111100        0      369999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         326 VVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       326 ~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +++...++++|+++++++|++++++
T Consensus       375 s~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          375 SWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             EEEEC--------------------
T ss_pred             EccCCCCCHHHHHHHHHHHHHHhcc
Confidence            7624667899999999999988653

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.89  E-value=2.5e-22  Score=190.27  Aligned_cols=263  Identities=13%  Similarity=0.135  Sum_probs=183.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEe--cCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLR--SDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~--~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +-.|++++.+|.+...+++..|++++.++  .++++.+|+++|++++++...+ ..+.+|++++++|++|.+.|+++|.+
T Consensus        93 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~  171 (371)
T 2e7j_A           93 DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAK  171 (371)
T ss_dssp             TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHH
Confidence            45677889999999999999999999999  7777999999999999854211 12468999999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhh-hccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN-TFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~-~~~~~~~yl~~~~~  186 (367)
                      +|++||+++++|++|+.+....+...   .+   +|+++.++||++++|.++|+++.+++ .... .......+....  
T Consensus       172 ~~~~~~~~li~D~a~~~~~~~~~~~~---~~---~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~--  242 (371)
T 2e7j_A          172 VCSEYDVPLLVNGAYAIGRMPVSLKE---IG---ADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKEV--  242 (371)
T ss_dssp             HHHTTTCCEEEECTTTBTTBCCCHHH---HT---CSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSBG--
T ss_pred             HHHHcCCeEEEECccccCCCCCChhh---cC---CCEEEecCCcCCCCCCCcEEEEEech-hhhhhccccccCccccc--
Confidence            99999999999999988765322111   12   48999999999999999999998653 2221 111000000000  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH--HHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH--ISLAKK  264 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~--~~la~~  264 (367)
                             .+                     .++       +   .......++.++++.+..    ++.++.  .+++++
T Consensus       243 -------~~---------------------~~~-------~---~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~  280 (371)
T 2e7j_A          243 -------EL---------------------LGC-------T---ARGATIITLMASFPHVRE----RIKRWDEEVEKARR  280 (371)
T ss_dssp             -------GG---------------------TTC-------C---CCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHH
T ss_pred             -------cc---------------------ccC-------C---cCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence                   00                     000       0   000112233344444322    556677  889999


Q ss_pred             HHHHhcCCCCeEEeCCC--CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-C---C--eeEEE-EEecCCC-CCH
Q psy3048         265 FADLVEKDDRFELVCPP--SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-Q---G--RPFLR-FVVTSPE-TNQ  334 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~--~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~---~--~~~lR-i~~~~~~-~~~  334 (367)
                      +.+.|+++ |+++..++  ..++++++++    ...++.+.|.+.|+. +.+... .   +  +.++| +++. .+ +++
T Consensus       281 l~~~L~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~-~~~~~~~~~~~g~~~~~iRii~~~-~~~~~~  353 (371)
T 2e7j_A          281 FAAEMEKL-GIKQLGDNPHNHDLMFFHAE----VLYEISKKAKGGRFF-LYRELKSRKIHGIKPGLTRYFKLS-TYGLSD  353 (371)
T ss_dssp             HHHHHHHT-TCEEESSSSCCSSEEEEECH----HHHHHHHHSSSGGGH-HHHHHHHTTEECSCTTCCSEEEEE-CTTCCH
T ss_pred             HHHHHHHc-CcEEecCCCccCceEEEECC----CHHHHHHHHHHCCEE-EEeccccccccCCCCCceEEEEee-ccCCCH
Confidence            99999988 89887654  4667777764    356788888877753 322110 0   1  46899 9764 44 789


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy3048         335 CDVAFAWNEISHQSSEM  351 (367)
Q Consensus       335 edid~li~~l~~~~~~~  351 (367)
                      +|+++++++|+++++++
T Consensus       354 ~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          354 EEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998753

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.89  E-value=1.6e-21  Score=186.51  Aligned_cols=265  Identities=14%  Similarity=0.068  Sum_probs=186.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++..|.++..+++..|++++.++.     +|+++|++++++...++..+.+|++++++|++|.+.|+++|.++|
T Consensus       127 gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~  201 (399)
T 3tqx_A          127 EDAIISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLA  201 (399)
T ss_dssp             TCEEEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred             CCEEEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            457778899999999999999999998886     478899999988654433467999999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccCh-hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLP-EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+... .......++ ...|+++.+.||++++++| |+++.++ +...........|.....  
T Consensus       202 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~~~~~~~~~~~~~~~~~~--  277 (399)
T 3tqx_A          202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHK-EIIEWLRNRSRPYLFSNT--  277 (399)
T ss_dssp             HHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECH-HHHHHHHHHCHHHHSSCC--
T ss_pred             HHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCH-HHHHHHHHhCcceeccCC--
Confidence            999999999999975433211 000111121 3459999999999996666 7777643 333322111112211100  


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                 ........+..+++... ++.++..++..++++++.+
T Consensus       278 -------------------------------------------~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~  313 (399)
T 3tqx_A          278 -------------------------------------------VAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRA  313 (399)
T ss_dssp             -------------------------------------------CCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHH
Confidence                                                       00011123334444332 5678888999999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ |+++. ++..+.+.+.++. .....++.++|.++|+. +.+..    ..+..++|+++ ...++++|+++++++
T Consensus       314 ~L~~~-g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~-v~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~  388 (399)
T 3tqx_A          314 GMEKL-GFQLV-PGNHPIIPVMLGD-AQLATNMADHLLQEGIY-VVGFSYPVVPMGKARIRVQM-SAVHTQQQLDRAIEA  388 (399)
T ss_dssp             HHHHH-TCCBC-CCSSSEEEEEEEC-HHHHHHHHHHHHHTTEE-CCEECTTTSCTTCEEEEEEC-CTTCCHHHHHHHHHH
T ss_pred             HHHHc-CCCcC-CCCCCEEEEEeCC-HHHHHHHHHHHHHCCCE-EeeeCCCCCCCCCceEEEEe-ecCCCHHHHHHHHHH
Confidence            99887 77765 5566777777764 34567899999998844 43332    23457999976 457889999999999


Q ss_pred             HHHHHHHhh
Q psy3048         344 ISHQSSEMN  352 (367)
Q Consensus       344 l~~~~~~~~  352 (367)
                      |+++++++.
T Consensus       389 l~~~~~~~~  397 (399)
T 3tqx_A          389 FGQVGKKLG  397 (399)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999988753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.89  E-value=9.9e-22  Score=189.29  Aligned_cols=270  Identities=17%  Similarity=0.127  Sum_probs=180.9

Q ss_pred             ceEEEecCCcchhHHHHHH----hC--CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IG--DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~--g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      +.+|+++...|.+...++.    ..  |++++.++.       +++|++++++.+      .+|++++++|++|.+.|++
T Consensus       119 d~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~  185 (416)
T 1qz9_A          119 RRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDT------AVVMLTHVNYKTGYMHDMQ  185 (416)
T ss_dssp             CCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTE------EEEEEESBCTTTCBBCCHH
T ss_pred             CcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCc------eEEEEeccccCcccccCHH
Confidence            5578888889998766543    23  889888875       678888886543      5889999999999999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc-eeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC-SAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|.++|++||+++++|++|+.+....+. ..  .+   +|++++++||++++++|+ |+++++++ ..........+|..
T Consensus       186 ~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~--~~---~d~~~~s~~K~l~~g~~~~g~l~~~~~-~~~~l~~~~~g~~g  258 (416)
T 1qz9_A          186 ALTALSHECGALAIWDLAHSAGAVPVDL-HQ--AG---ADYAIGCTYKYLNGGPGSQAFVWVSPQ-LCDLVPQPLSGWFG  258 (416)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSCCCH-HH--HT---CSEEEECSSSTTCCCTTCCCEEEECTT-TTTTSCCSCCCGGG
T ss_pred             HHHHHHHHcCCEEEEEccccccCcCCCh-hh--cC---CCEEEecCcccCCCCCCCeEEEEECHH-HHhccCCCccccCc
Confidence            9999999999999999999865443321 11  12   499999999999888888 99998653 22211111111111


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....  ......|               .+    ..+.   ..+...........++.++++.+..++++++.++..+++
T Consensus       259 ~~~~--~~~~~~~---------------~~----~~~~---~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  314 (416)
T 1qz9_A          259 HSRQ--FAMEPRY---------------EP----SNGI---ARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT  314 (416)
T ss_dssp             BCTT--SCCCSSC---------------CB----CSSG---GGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccc--cCCCCcc---------------CC----Ccch---HHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1000  0000001               00    0000   001111111122344556676665578899999999999


Q ss_pred             HHHHHHhcCC-C--CeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHH
Q psy3048         263 KKFADLVEKD-D--RFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       263 ~~l~~~L~~~-~--g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      +++.+.|+++ +  |+++..++    ..++++++++.    ..++.+.|.++|+ .+.   ..+..++|+++.+.+++++
T Consensus       315 ~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~gi-~~~---~~~~~~lRis~~~~~~t~~  386 (416)
T 1qz9_A          315 DLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----GYAVIQALIDRGV-IGD---YREPRIMRFGFTPLYTTFT  386 (416)
T ss_dssp             HHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTE-ECE---EETTTEEEEECCTTTCCHH
T ss_pred             HHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----HHHHHHHHHhCCc-Eec---cCCCCeEEEeCcccCCCHH
Confidence            9999999885 6  88887653    35677777653    5688889998884 332   2345689997643578999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy3048         336 DVAFAWNEISHQSSEM  351 (367)
Q Consensus       336 did~li~~l~~~~~~~  351 (367)
                      |+++++++|++++++.
T Consensus       387 ~i~~~~~~l~~~~~~~  402 (416)
T 1qz9_A          387 EVWDAVQILGEILDRK  402 (416)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999998764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.88  E-value=1.2e-21  Score=186.96  Aligned_cols=275  Identities=10%  Similarity=0.032  Sum_probs=177.9

Q ss_pred             EEEecCCcchhH--HHHHHhCC--cceEEEecCCC---------CCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCccc
Q psy3048          32 VAYASDQSNSSV--EKSAIIGD--VPVRQLRSDDN---------GVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        32 ~v~~s~~~H~s~--~~~~~~~g--~~v~~v~~~~~---------~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      .|++++.+|++.  ...+...|  .+++.++.+..         +.+|+++|++++++ .+      .+|++++++|++|
T Consensus        76 ~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~~~~G  149 (379)
T 3ke3_A           76 DCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKS------AIVYAPHVETSSG  149 (379)
T ss_dssp             EEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTC------SEEEEESEETTTT
T ss_pred             eEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCC------cEEEEEeecCCCc
Confidence            455556777764  23344455  47777876431         36899999999964 34      3788899999999


Q ss_pred             ccCC---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhc
Q psy3048          98 AFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTF  174 (367)
Q Consensus        98 ~i~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  174 (367)
                      .+.|   +++|+++||+||+++++|++|+ +..+.+...   .+   +|++++++|||+++|+|+|+++++++ ......
T Consensus       150 ~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~---~~---~d~~~~s~~K~l~~~~g~g~~~~~~~-~~~~l~  221 (379)
T 3ke3_A          150 IILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKE---LG---IDVLISAPQKGWSSTPCAGLVMLSAA-AIKKVE  221 (379)
T ss_dssp             EECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHH---HT---CSEEEECTTTTTCSCCCEEEEEECHH-HHHHHH
T ss_pred             eeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccc---cC---CCEEEecchhhcCCCCceEEEEECHH-HHHhhh
Confidence            9999   9999999999999999999998 544333211   13   49999999999999999999998653 232221


Q ss_pred             c-CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHH
Q psy3048         175 F-TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       175 ~-~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  253 (367)
                      . ...+|..           +  +..|...    ++. ++.+.       +.+.. ..+.....++.++++.+..+|+++
T Consensus       222 ~~~~~~~~~-----------~--~~~~~~~----~~~-~~~g~-------~~~~~-t~~~~~~~a~~aal~~~~~~g~~~  275 (379)
T 3ke3_A          222 STESNCFSL-----------D--LKQWLTI----MRA-YENGG-------HAYHA-TMPTDSLRQFRDAILEAKEIGFDI  275 (379)
T ss_dssp             TCCCSCSTT-----------C--HHHHHHH----HHH-HHTTS-------CCCSS-CCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cCCCCceee-----------c--HHHHHHH----HHh-hhccC-------CCCCC-CCCHHHHHHHHHHHHHHHHhcHHH
Confidence            1 1111111           0  0011000    000 00000       00100 011122345667777777788999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEeCCC--CceeE-EEEEcCCchHHHHHHHHHhccCcEEEEEeEE------CCeeEEE
Q psy3048         254 YLRKHISLAKKFADLVEKDDRFELVCPP--SMGLV-CFRLKGDNDLTNQLYERLMSHKQIYIIKASF------QGRPFLR  324 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g~~~~~~~--~~~~v-~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------~~~~~lR  324 (367)
                      +.++..++++++++.|+++ |++++.++  .++.+ .+...+ .  .....+.|.++|+. +.++..      .+...+|
T Consensus       276 ~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-~--~~~~~~~L~~~Gi~-v~~g~~~~~~~~~~~~~lR  350 (379)
T 3ke3_A          276 LRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-D--DMHKGSAFAEAGLQ-IAAGVPLKVGEPDNFKTFR  350 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-H--HHHSSHHHHHTTCC-CEECCCCSSCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-c--chHHHHHHHHCCeE-EeCCccccccccCcCCEEE
Confidence            9999999999999999998 88876544  24434 333322 1  12235677778854 443321      1256899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +++ +.++|++||++++++|+++++++.
T Consensus       351 is~-~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          351 LGL-FGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             EEC-CSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             EeC-CcCCCHHHHHHHHHHHHHHHHHhc
Confidence            975 567899999999999999988765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.88  E-value=5.9e-22  Score=187.53  Aligned_cols=255  Identities=12%  Similarity=-0.015  Sum_probs=172.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCC--cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGV--LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~--~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +|+++..+|.. ...++..|++++.+++++++.  ++++. +  +++++      .+|.+++.+|.+|.+.|.     |+
T Consensus        97 ~i~~~~~~~~~-~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t------~lv~~~~~e~~tG~~~~~-----i~  161 (361)
T 3m5u_A           97 YANTGVWTKKA-IKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNA------DYAYICSNNTIYGTQYQN-----YP  161 (361)
T ss_dssp             EEECSHHHHHH-HHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTS------SEEEEESEETTTTEECSS-----CC
T ss_pred             EEeCCHHHHHH-HHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCC------CEEEEeCCCCCcceeCCc-----cc
Confidence            46665556643 344455799999999987764  56666 3  66655      378889999999998662     44


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhcc-CCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF-TDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-~~~~yl~~~~~~~  188 (367)
                      +. |++++||++++.+..+.+.        +.+|++++++|||+ +|+|+|+++++++. +.+... ..+.++.....  
T Consensus       162 ~~-~~~~~vD~~q~~g~~~id~--------~~~d~~~~s~~K~~-gp~G~g~l~~~~~~-~~~~~~~~~p~~~~~~~~--  228 (361)
T 3m5u_A          162 KT-KTPLIVDASSDFFSRKVDF--------SNIALFYGGVQKNA-GISGLSCIFIRKDM-LERSKNKQIPSMLNYLTH--  228 (361)
T ss_dssp             CC-SSCEEEECGGGTTSSCCCC--------TTEEEEEEETTTTS-SCTTCEEEEEEHHH-HHHHHTCCCCGGGCHHHH--
T ss_pred             cc-CCEEEEEcccccCCCCCCc--------ccCCEEEEechhcc-CCCccEEEEEcHHH-HhhhcCCCCCceeehHHH--
Confidence            44 9999999999988776542        23599999999999 59999999997643 322211 11222110000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~  267 (367)
                                             .+....++|          .+-...+++.++++.+..+ |++++.++..++++++++
T Consensus       229 -----------------------~~~~~~~~T----------p~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~  275 (361)
T 3m5u_A          229 -----------------------AENQSLFNT----------PPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYE  275 (361)
T ss_dssp             -----------------------HHTTTCSSC----------CCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------hhcCCCCCC----------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                                   000011111          1112346777888888778 899999999999999999


Q ss_pred             HhcCCCCe-EEeCCC--C-ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRF-ELVCPP--S-MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~-~~~~~~--~-~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      +|++++|+ .+..++  . .++++|.+++......++.+.|.++|+ .+..+ +...+.+|+|+ +.++|++|||+++++
T Consensus       276 ~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI-~~~~g-~~~~g~iRiS~-~~~~t~edId~l~~a  352 (361)
T 3m5u_A          276 CIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGM-IGLKG-HRILGGIRASI-YNALNLDQVKTLCEF  352 (361)
T ss_dssp             HHHTSTTSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTE-ECCBC-CTTTCSEEEEC-CTTSCHHHHHHHHHH
T ss_pred             HHHHCCCeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCC-EEecC-CCccCeEEEEc-cCCCCHHHHHHHHHH
Confidence            99999776 554432  2 358899987511223567788888874 33222 12224699975 688999999999999


Q ss_pred             HHHHHHH
Q psy3048         344 ISHQSSE  350 (367)
Q Consensus       344 l~~~~~~  350 (367)
                      |+++.++
T Consensus       353 l~~~~~~  359 (361)
T 3m5u_A          353 MKEFQGK  359 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999775

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.88  E-value=2.5e-21  Score=188.33  Aligned_cols=274  Identities=13%  Similarity=0.051  Sum_probs=175.4

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++.+|.+...++    +..|++++.+++ +++.+|+++    +++++      .+|+++++ |++|.+.|+++|
T Consensus       150 gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~~t------~~v~i~~p-n~tG~~~~l~~i  217 (438)
T 1wyu_A          150 RMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGEEV------GAVVVQNP-NFLGALEDLGPF  217 (438)
T ss_dssp             CCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCTTE------EEEEEESS-CTTSBCCCHHHH
T ss_pred             CCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCCCe------EEEEEECC-CCCeEEecHHHH
Confidence            446778899999987665    448999999997 567888776    43333      58888998 999999999999


Q ss_pred             HHHHhhcCcEEEEecc-cccccccChhhhhhhCCCCCcceeeecccc-----ccccCCcceeEEEecchhhhhhccCCcc
Q psy3048         106 GPICQEYNIWLHVDAA-YAGSALLLPEYAHLKRGLEYVDSFAFNAHK-----WLLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a-~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK-----~l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +++||++|+++++|.. ++.+.+..+ ..   .+   +|++++++||     |+++| |+|++++++. .... +   +.
T Consensus       218 ~~la~~~g~~vivd~d~~a~g~~~~~-~~---~g---~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~~~-l---~~  284 (438)
T 1wyu_A          218 AEAAHGAGALFVAVADPLSLGVLKPP-GA---YG---ADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FVRQ-L---PG  284 (438)
T ss_dssp             HHHHHHTTCEEEEECCTTGGGTBCCH-HH---HT---CSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GGGG-C---CS
T ss_pred             HHHHHHcCCEEEEEechhhccCcCCC-cc---CC---CCEEEECCcccCCCccCCCC-CeeEEEEcHH-HHHh-C---CC
Confidence            9999999999997754 443333322 11   12   4999999888     77888 9999998653 2322 1   11


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHH--HHHhhHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMT--LRSYGLKGLQAYLRK  257 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~g~~~~~~~  257 (367)
                      ++....... .....|.+. . . ....+.... ...       ..+   ++. ....++.++  +..++.+|++++.++
T Consensus       285 ~~~g~~~~~-~~~~~~~~~-l-~-~~~~~~r~~-~~t-------~~~---~~~-~~~~a~~aa~~l~~~~~~g~~~~~~~  348 (438)
T 1wyu_A          285 RLVSETVDV-EGRRGFILT-L-Q-AREQYIRRA-KAK-------SNI---TTN-AQLTALMGAMYLAALGPEGLREVALK  348 (438)
T ss_dssp             CCEEEEEBT-TSCEEEEEC-C-G-GGSHHHHGG-GSS-------CCC---CSC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceecccccc-CCCcceeee-c-c-ccccccchh-ccc-------CCc---cch-HHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            111100000 000011000 0 0 000000000 000       000   000 011233333  677788899999999


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEE-EEEeEECCeeEEEEEecCCCCCHH
Q psy3048         258 HISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIY-IIKASFQGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~~~~~~lRi~~~~~~~~~e  335 (367)
                      ..++++++.++|++++|+++..+ +.+..+.|+..   ....++.++|.++|+.. +.+..+.+..++|+++ ..+++++
T Consensus       349 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~-~~~~t~e  424 (438)
T 1wyu_A          349 SVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP---KDPEAVRRALAERGFHGATPVPREYGENLALFAA-TELHEEE  424 (438)
T ss_dssp             HHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS---SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEEC-CTTCCHH
T ss_pred             HHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC---CCHHHHHHHHHHCCceeccccccccCCCeEEEEe-cccCCHH
Confidence            99999999999999999998875 34555666653   22578999999888543 1222223357999976 5788999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         336 DVAFAWNEISHQS  348 (367)
Q Consensus       336 did~li~~l~~~~  348 (367)
                      |+++++++|++++
T Consensus       425 di~~~~~~l~~~l  437 (438)
T 1wyu_A          425 DLLALREALKEVL  437 (438)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.87  E-value=1.6e-20  Score=182.07  Aligned_cols=264  Identities=12%  Similarity=0.045  Sum_probs=183.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|+++...|.++..+++..|++++.++.     +|+++|++++++...  ..+.+|+++.++|++|.+.|+++|.++|
T Consensus       148 gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~  220 (427)
T 2w8t_A          148 GEYVILDADSHASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVA  220 (427)
T ss_dssp             TCEEEEETTCCHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHH
T ss_pred             CCEEEECCcccHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence            346777899999999999999999988874     599999999976321  1246888899999999999999999999


Q ss_pred             hhcCcEEEEecccccccccC-hhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLL-PEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+.. ........++ ..+|+++.+.||+++ ++| |+++.++ +..........+|.....  
T Consensus       221 ~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-G~v~~~~-~l~~~l~~~~~~~~~~~~--  295 (427)
T 2w8t_A          221 KKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-GFVVSNH-PKFEAVRLACRPYIFTAS--  295 (427)
T ss_dssp             HHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-EEEEECC-TTGGGGGGTCHHHHSSCC--
T ss_pred             HHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCC-CEEEeCH-HHHHHHHHhcccccccCC--
Confidence            99999999999998866531 0000111122 246999999999997 556 7777743 333222111112211100  


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                 ........+.++++.+.  .++++.++..++++++.+
T Consensus       296 -------------------------------------------~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~  330 (427)
T 2w8t_A          296 -------------------------------------------LPPSVVATATTSIRKLM--TAHEKRERLWSNARALHG  330 (427)
T ss_dssp             -------------------------------------------CCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHH
Confidence                                                       00011223334454432  246778889999999999


Q ss_pred             HhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .|+++ |+++..++ ..+++.+.+++ .....++.++|.++|+ ++.+...    .+..++|+++ ...++++|++++++
T Consensus       331 ~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi-~v~~~~~~~~~~~~~~lRi~~-~~~~t~e~i~~~~~  406 (427)
T 2w8t_A          331 GLKAM-GFRLGTETCDSAIVAVMLED-QEQAAMMWQALLDGGL-YVNMARPPATPAGTFLLRCSI-CAEHTPAQIQTVLG  406 (427)
T ss_dssp             HHHHH-TCEESCSSCCSSEEEEEESS-HHHHHHHHHHHHHTTE-ECEEECTTTSCTTCEEEEEEC-CTTCCHHHHHHHHH
T ss_pred             HHHHc-CCcccCCCCCCCEEEEEECC-HHHHHHHHHHHHHCCe-EEeeeCCCCCCCCCeEEEEEe-CCCCCHHHHHHHHH
Confidence            99887 88877455 66778888754 3456789999999984 4444322    2346999976 56678999999999


Q ss_pred             HHHHHHHHhhCC
Q psy3048         343 EISHQSSEMNLP  354 (367)
Q Consensus       343 ~l~~~~~~~~~~  354 (367)
                      +|+++++++...
T Consensus       407 ~l~~~l~~~~~~  418 (427)
T 2w8t_A          407 MFQAAGRAVGVI  418 (427)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHhCcc
Confidence            999998876544

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.87  E-value=2.7e-22  Score=191.55  Aligned_cols=251  Identities=12%  Similarity=-0.009  Sum_probs=170.9

Q ss_pred             Ccchh--HHHHHHhCCcceEEEecC--CCCC-cCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CChhhHHHHHhh
Q psy3048          38 QSNSS--VEKSAIIGDVPVRQLRSD--DNGV-LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DNLEELGPICQE  111 (367)
Q Consensus        38 ~~H~s--~~~~~~~~g~~v~~v~~~--~~~~-~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~dl~~I~~l~~~  111 (367)
                      ++|++  +...++..| +++.++++  ++|. +++++++++++++++      +|++++.+|.+|++ +|+++|+     
T Consensus       123 ~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~------lV~~~h~et~tG~~i~pi~~i~-----  190 (386)
T 3qm2_A          123 AGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAA------YLHYCPNETIDGIAIDETPDFG-----  190 (386)
T ss_dssp             SSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCS------CEEECSEETTTTEECCCCCCCC-----
T ss_pred             CCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCc------EEEEECCcCCcCEecCchhhhc-----
Confidence            34444  333445568 89999987  4564 888888888877664      78899999999995 9999996     


Q ss_pred             cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                      +|++++||++|+.+.++.+..        ..|++++++|||+ +|+|+|+++++++. +++.....+.++.         
T Consensus       191 ~g~~~~vDa~qs~g~~pidv~--------~~~~~~~s~hK~l-GP~G~g~l~v~~~~-~~~~~~~~p~~~~---------  251 (386)
T 3qm2_A          191 PEVVVTADFSSTILSAPLDVS--------RYGVIYAGAQKNI-GPAGLTLVIVREDL-LGKAHESCPSILD---------  251 (386)
T ss_dssp             TTCCEEEECTTTTTSSCCCGG--------GCSEEEEETTTTT-CCTTEEEEEEEGGG-CSCCCTTSCGGGC---------
T ss_pred             CCCEEEEEcccccCCCCCCcc--------ccCEEEEeccccc-CCCccEEEEECHHH-HhhhcccCCcHHH---------
Confidence            799999999999988776532        2267889999999 59999999997643 2221111111110         


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhc
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVE  270 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~~L~  270 (367)
                         |     ..        ..+...+++|          .+-...+++.++++.+..+ |++++.++..++++++++.|+
T Consensus       252 ---~-----~~--------~~~~~~~~gT----------p~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~  305 (386)
T 3qm2_A          252 ---Y-----TV--------LNDNDSMFNT----------PPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVID  305 (386)
T ss_dssp             ---H-----HH--------HHHC-----------------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---H-----HH--------HhhcCCCCCC----------CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence               0     00        0000011111          1112346777888888787 899999999999999999999


Q ss_pred             CCCCeE-EeCCC--C-ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         271 KDDRFE-LVCPP--S-MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       271 ~~~g~~-~~~~~--~-~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      ++ ++. ...++  . .++++|.+++ .....++...|.++|+. +..+ ....+.+|+|+ ..++|++|||+++++|++
T Consensus       306 ~~-~~~~~~~~~~~rs~~iv~f~~~~-~~~~~~~~~~L~~~gI~-~~~g-~~~~~~iRiS~-~~~~t~edId~l~~~l~~  380 (386)
T 3qm2_A          306 NS-DFYRNDVAQANRSRMNVPFQLAD-NTLDKVFLEESFAAGLH-ALKG-HRVVGGMRASI-YNAMPIEGVKALTDFMID  380 (386)
T ss_dssp             TC-SSEECCBCGGGBCSSEEEEEESS-GGGHHHHHHHHHHTTEE-CCBC-CTTTCSEEEEC-CTTSCHHHHHHHHHHHHH
T ss_pred             HC-CCcccCCCHHHcCceEEEEECCC-ccccHHHHHHHHHCCCE-EeCC-CCCcCeEEEEc-CCCCCHHHHHHHHHHHHH
Confidence            98 653 22222  3 3588999875 23336777778888843 2211 12123599975 788999999999999999


Q ss_pred             HHHH
Q psy3048         347 QSSE  350 (367)
Q Consensus       347 ~~~~  350 (367)
                      +.++
T Consensus       381 ~~~~  384 (386)
T 3qm2_A          381 FERR  384 (386)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9775

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.87  E-value=1.9e-20  Score=179.50  Aligned_cols=262  Identities=12%  Similarity=0.042  Sum_probs=179.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++...|.++..+++..|++++.++.     +|+++|++++++..+.+..+.+|++++++|++|.+.|+++|.++|+
T Consensus       130 d~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~  204 (401)
T 1fc4_A          130 DAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLAD  204 (401)
T ss_dssp             CEEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             CEEEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHH
Confidence            46777889999999999999999988874     4899999999864332223568888999999999999999999999


Q ss_pred             hcCcEEEEecccccccc-c-ChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 EYNIWLHVDAAYAGSAL-L-LPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~-~-~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +||+++++|++|+.+.. . ..... ...++ ...|+++.+.||+++++.| |+++.+ ++..........++....   
T Consensus       205 ~~~~~li~De~~~~g~~~~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~~g-G~~~~~-~~~~~~l~~~~~~~~~~~---  278 (401)
T 1fc4_A          205 KYDALVMVDDSHAVGFVGENGRGSH-EYCDVMGRVDIITGTLGKALGGASG-GYTAAR-KEVVEWLRQRSRPYLFSN---  278 (401)
T ss_dssp             HTTEEEEEECTTTTTTSSTTSCCHH-HHTTCTTCCSEEEEESSSTTCSSSC-EEEEEC-HHHHHHHHHHCHHHHHSC---
T ss_pred             HcCCEEEEECcccccccCCCCCccH-HHcCCCcCCcEEEecchhhccCCCC-EEEEcC-HHHHHHHHHhCcCceeCC---
Confidence            99999999999974433 1 11111 11122 2359999999999976766 887774 333332211111111000   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                          .                                      ........+..+++.+..  .++..++..++++++.+
T Consensus       279 ----~--------------------------------------~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~  314 (401)
T 1fc4_A          279 ----S--------------------------------------LAPAIVAASIKVLEMVEA--GSELRDRLWANARQFRE  314 (401)
T ss_dssp             ----C--------------------------------------CCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred             ----C--------------------------------------CCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence                0                                      000112233334443321  46777888999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ |+++. ++..+.+.++++. .....++.+.|.++|+ .+.+...    .+..++|+++ ...++++|+++++++
T Consensus       315 ~L~~~-g~~~~-~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~  389 (401)
T 1fc4_A          315 QMSAA-GFTLA-GADHAIIPVMLGD-AVVAQKFARELQKEGI-YVTGFFYPVVPKGQARIRTQM-SAAHTPEQITRAVEA  389 (401)
T ss_dssp             HHHHT-TCCBC-CSSSSEEEEEEEC-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEEEEEC-CTTCCHHHHHHHHHH
T ss_pred             HHHHc-CCccc-CCCCCEEEEEcCC-hHHHHHHHHHHHHCCc-EEeeecCCCCCCCCceEEEEe-CCCCCHHHHHHHHHH
Confidence            99987 77765 5566777787753 3346688899998884 4433322    1346899965 567789999999999


Q ss_pred             HHHHHHHhh
Q psy3048         344 ISHQSSEMN  352 (367)
Q Consensus       344 l~~~~~~~~  352 (367)
                      |+++++++.
T Consensus       390 l~~~~~~~~  398 (401)
T 1fc4_A          390 FTRIGKQLG  398 (401)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999988753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.87  E-value=3e-21  Score=184.12  Aligned_cols=265  Identities=7%  Similarity=-0.042  Sum_probs=181.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCccccc---CCh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGTCAF---DNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~G~i---~dl  102 (367)
                      .-.|+++..+|.++..+++..|++++.++.+   .++.+|+++|+++++ +.+      .+|++++++|++|.+   +++
T Consensus       109 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~------~~v~i~~p~nptG~~~~~~~l  182 (391)
T 3dzz_A          109 GDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSV------RMMVFCNPHNPIGYAWSEEEV  182 (391)
T ss_dssp             TCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTE------EEEEEESSBTTTTBCCCHHHH
T ss_pred             CCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCc------eEEEEECCCCCCCcccCHHHH
Confidence            4467788999999999999999999999884   235599999999997 333      578889999999999   889


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhh-CCCCCcc--eeeeccccccc-cCCcceeEEEecchhhhhhccCCc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLEYVD--SFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~-~~~~~~D--~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      ++|+++|++||+++++|++|+.+.+......... .+....|  +++.+.||+++ .+.++|+++.++++..........
T Consensus       183 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~  262 (391)
T 3dzz_A          183 KRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFF  262 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHH
Confidence            9999999999999999999986554321111000 0111145  88999999996 446788888864443332110000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      .+...                                              ....+....+..++.. +.+.+++..++.
T Consensus       263 ~~~~~----------------------------------------------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~  295 (391)
T 3dzz_A          263 LAGIG----------------------------------------------EPNLLAIPAAIAAYEE-GHDWLRELKQVL  295 (391)
T ss_dssp             HHTCS----------------------------------------------SCCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             hhccC----------------------------------------------CCCHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence            00000                                              0000112333344443 455678888899


Q ss_pred             HHHHHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-E--CCeeEEEEEecCCCCC
Q psy3048         259 ISLAKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-F--QGRPFLRFVVTSPETN  333 (367)
Q Consensus       259 ~~la~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~  333 (367)
                      .++++++.+.|++ +||+++..+.....+++.++.......++.++|. ++|+ .+.++. +  .++.++|+++.   ++
T Consensus       296 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRis~~---~~  371 (391)
T 3dzz_A          296 RDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGL-IISAGNGYRGNGHEFVRINLA---CP  371 (391)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCE-ECEESGGGCTTGGGEEEEECC---SC
T ss_pred             HHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEec---CC
Confidence            9999999999998 8999887554444445666531123668888886 6774 444432 2  23579999764   58


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy3048         334 QCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~  351 (367)
                      ++|++++++.|+++++++
T Consensus       372 ~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          372 KELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.87  E-value=6e-21  Score=196.79  Aligned_cols=271  Identities=17%  Similarity=0.103  Sum_probs=186.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCC-----CCc-----CHHHHHHHHHHH--hh--CCCccEEEEEecCCCc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-----GVL-----RGDALLTAVKED--LA--KGLIPCCLVATLGTTG   95 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-----~~~-----d~~~L~~~l~~~--~~--~~~~~~~vv~~~~~t~   95 (367)
                      .-.|++++.+|.|+..++...|+++++++++.+     +.+     |+++|++++++.  ++  ++..|.+++++++ |+
T Consensus       245 GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~  323 (755)
T 2vyc_A          245 NDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TY  323 (755)
T ss_dssp             TCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CT
T ss_pred             CCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CC
Confidence            446778899999999999999999999987532     346     999999999863  32  4455667888886 78


Q ss_pred             ccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC--cce------eeeccccccccCCcceeEEEecc
Q psy3048          96 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY--VDS------FAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        96 ~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~--~D~------~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      +|.+.|+++|+++|++||+++++|+||+++..+.+.++.. ..+..  +|+      ++.++||++.+|.++|++++++.
T Consensus       324 ~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~-~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~  402 (755)
T 2vyc_A          324 DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH-YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG  402 (755)
T ss_dssp             TSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTS-SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECC
T ss_pred             CceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCc-chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCc
Confidence            9999999999999999999999999998754443322100 11112  476      99999999999999999998765


Q ss_pred             h-hhh-hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH
Q psy3048         168 N-HLT-NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS  245 (367)
Q Consensus       168 ~-~~~-~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (367)
                      . .+. ..+.   .++....    ..++++                                      ....++.++++.
T Consensus       403 ~~~i~~~~~~---~~~~~~~----s~sp~~--------------------------------------~~iaal~aA~~~  437 (755)
T 2vyc_A          403 RGAINFSRFN---QAYMMHA----TTSPLY--------------------------------------AICASNDVAVSM  437 (755)
T ss_dssp             BTCCCHHHHH---HHHHHTS----CSSCCH--------------------------------------HHHHHHHHHHHH
T ss_pred             ccccCHHHHH---HHHHHhC----CCCHHH--------------------------------------HHHHHHHHHHHH
Confidence            1 110 0000   0000000    011122                                      122455566666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCC---------eEEeCCCC----------------------------------
Q psy3048         246 YGLKGLQAYLRKHISLAKKFADLVEKDDR---------FELVCPPS----------------------------------  282 (367)
Q Consensus       246 ~~~~g~~~~~~~~~~la~~l~~~L~~~~g---------~~~~~~~~----------------------------------  282 (367)
                      +..+|.++++++..+++++++++|++++|         ++++.++.                                  
T Consensus       438 l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (755)
T 2vyc_A          438 MDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGES  517 (755)
T ss_dssp             HSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCT
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccc
Confidence            66665677889999999999999998877         77765431                                  


Q ss_pred             ---------------ceeEEEEEcCCc---------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHH
Q psy3048         283 ---------------MGLVCFRLKGDN---------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       283 ---------------~~~v~f~~~~~~---------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid  338 (367)
                                     ...++|.+++.+         ..+.++.+.|.+.|+ ++..   .+...+|++ .++.+|++|++
T Consensus       518 ~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI-~~e~---~~~~~v~~~-~~~g~t~~~~~  592 (755)
T 2vyc_A          518 WHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGI-VPTR---TTDFQIMFL-FSMGVTRGKWG  592 (755)
T ss_dssp             TTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTC-CCSE---ECSSEEEEE-CCTTCCTTTTH
T ss_pred             cccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCC-EEee---cCCCeEEEE-ECCCCCHHHHH
Confidence                           135567665311         123578888877763 3322   245678884 57888999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy3048         339 FAWNEISHQSSEMN  352 (367)
Q Consensus       339 ~li~~l~~~~~~~~  352 (367)
                      +++++|+++.+...
T Consensus       593 ~l~~al~~~~~~~~  606 (755)
T 2vyc_A          593 TLVNTLCSFKRHYD  606 (755)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999977653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.87  E-value=3.2e-21  Score=182.97  Aligned_cols=271  Identities=13%  Similarity=0.063  Sum_probs=177.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.+|.+...++...|++++.++.++++.+|+++|++++++.+      .+|+++++   +|.+.|+++|.++|
T Consensus        74 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~---tG~~~~l~~i~~l~  144 (375)
T 2fnu_A           74 RNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERT------KAIVSVDY---AGKSVEVESVQKLC  144 (375)
T ss_dssp             SCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE------EEEEEECG---GGCCCCHHHHHHHH
T ss_pred             CCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcCc------eEEEEeCC---cCCccCHHHHHHHH
Confidence            3467888999999999999999999999998777899999999886544      35666654   89999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEec-chhhhhhccCCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN-ANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~-~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ++||+++++|++|+.+......   .+.....++++++++||++ +| |.|++++.+ ++.......    +...+... 
T Consensus       145 ~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~----~~~~~~~~-  214 (375)
T 2fnu_A          145 KKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKL----FRSHGMLK-  214 (375)
T ss_dssp             HHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHH----HTBTTEEE-
T ss_pred             HHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHH----HHhcCCcc-
Confidence            9999999999999876543221   0111223567788888998 45 899988853 433322110    00000000 


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                       .....|                 +...             .+..+....+.+++.....++++++.++..++++++.+.
T Consensus       215 -~~~~~~-----------------~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  263 (375)
T 2fnu_A          215 -KDFFEG-----------------EVKS-------------IGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRI  263 (375)
T ss_dssp             -SSSSCE-----------------EESS-------------CCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccc-----------------cccc-------------ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000000                 0000             000001112233333334567888999999999999999


Q ss_pred             hcCCCCeEEeCCC-----CceeEEEEEcCCch-HHHHHHHHHhccCcEEEEEeEEC----------------------Ce
Q psy3048         269 VEKDDRFELVCPP-----SMGLVCFRLKGDND-LTNQLYERLMSHKQIYIIKASFQ----------------------GR  320 (367)
Q Consensus       269 L~~~~g~~~~~~~-----~~~~v~f~~~~~~~-~~~~l~~~L~~~g~~~~~~~~~~----------------------~~  320 (367)
                      |++++|+++..++     ....+.+.++.... ...++.+.|.++|+. +......                      ..
T Consensus       264 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~-v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  342 (375)
T 2fnu_A          264 FKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGIL-AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYH  342 (375)
T ss_dssp             HTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEE-CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHH
T ss_pred             hhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCC-ccccccccccchhhhcCCCccCChHHHHHHh
Confidence            9999899886541     12344555543111 467899999888843 3211000                      12


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .++|+++ +.+++++|+++++++|+++++++.
T Consensus       343 ~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          343 AEISLPC-HANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             HEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEecC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5899964 678899999999999999988753

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.86  E-value=3e-21  Score=185.22  Aligned_cols=262  Identities=7%  Similarity=-0.022  Sum_probs=178.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec------CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC--
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS------DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN--  101 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~------~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d--  101 (367)
                      .-.|+++..+|.++..+++..|++++.++.      ++++.+|+++|++++++.+      .+|++++++|++|.+.|  
T Consensus       126 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~  199 (407)
T 3nra_A          126 GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGA------RVFLFSNPNNPAGVVYSAE  199 (407)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTC------CEEEEESSCTTTCCCCCHH
T ss_pred             CCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCC------cEEEEcCCCCCCCcccCHH
Confidence            446777889999999999999999999998      3678999999999998744      47888999999999988  


Q ss_pred             -hhhHHHHHhhcCcEEEEecccccccccChhhhh-h-hC-CCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccC
Q psy3048         102 -LEELGPICQEYNIWLHVDAAYAGSALLLPEYAH-L-KR-GLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFT  176 (367)
Q Consensus       102 -l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~-~~-~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~  176 (367)
                       +++|+++|++||+++++|++|+.+.+....... . +. .....++++.+.+|+++ .+.++|+++.+ +.........
T Consensus       200 ~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~  278 (407)
T 3nra_A          200 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGS-RAIIARMEKL  278 (407)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEEC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcC-HHHHHHHHHH
Confidence             999999999999999999999875543211100 0 00 11224688889999997 44567887764 3322211100


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGLQAY  254 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~~  254 (367)
                      ...+...                                               .   ..+...++...+  +.+.+++.
T Consensus       279 ~~~~~~~-----------------------------------------------~---~~~~~~a~~~~l~~~~~~~~~~  308 (407)
T 3nra_A          279 QAIVSLR-----------------------------------------------A---AGYSQAVLRGWFDEAPGWMEDR  308 (407)
T ss_dssp             HHHHTSS-----------------------------------------------S---CHHHHGGGGGTTCCCTTHHHHH
T ss_pred             HhhhccC-----------------------------------------------C---ChHHHHHHHHHHhccchHHHHH
Confidence            0000000                                               0   001111111112  22456777


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCC
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSP  330 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~  330 (367)
                      .++..++++++.+.|++++++.+..+.....+.+.++.......++.+.|.++ | +++.++..   .+..++|++++. 
T Consensus       309 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~iRis~~~-  386 (407)
T 3nra_A          309 IARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAG-VVVTPGTEFSPHTADSVRLNFSQ-  386 (407)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHC-EECEEGGGTCTTCTTBEEEECCS-
T ss_pred             HHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEeCC-
Confidence            88888999999999999888887655444555555543223356888888765 7 44544322   245789997642 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~  352 (367)
                        +++|+++++++|+++++++.
T Consensus       387 --~~~~i~~~~~~l~~~~~~~~  406 (407)
T 3nra_A          387 --DHEAAVAAARRIVTLVERYR  406 (407)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHB
T ss_pred             --CHHHHHHHHHHHHHHHHHhh
Confidence              79999999999999988764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.86  E-value=8.7e-21  Score=183.77  Aligned_cols=267  Identities=14%  Similarity=0.122  Sum_probs=175.3

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      ...|++++.+|.+...+..    ..|++++.+++++ ++.+|+++|++++++.+      .+|++++++|++|.+.|+++
T Consensus       123 ~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~  196 (432)
T 3a9z_A          123 RPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTT------CLVTIMLANNETGVIMPISE  196 (432)
T ss_dssp             CCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTE------EEEECCSBCTTTCBBCCHHH
T ss_pred             CCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCc------eEEEEECcccCcccccCHHH
Confidence            3578889999999876654    3689999999875 78899999999987544      58899999999999999999


Q ss_pred             HHHHHhhcC----------cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhc
Q psy3048         105 LGPICQEYN----------IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTF  174 (367)
Q Consensus       105 I~~l~~~~g----------i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  174 (367)
                      |.++|+++|          +++++|++|+.+....+...   .   .+|+++.++||+++ |. +|++++++.....   
T Consensus       197 i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~---~---~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~---  265 (432)
T 3a9z_A          197 ISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVED---L---GVDFLTIVGHKFYG-PR-IGALYVRGVGKLT---  265 (432)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHH---H---CCSEEEEEGGGTTC-CS-CEEEEETTBTTTB---
T ss_pred             HHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhh---c---CCCEEEEehhHhcC-Cc-ceEEEEccccccC---
Confidence            999999999          99999999976543322111   1   24999999999874 65 9999986542111   


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAY  254 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  254 (367)
                      ...+.+......                                     ..+...........++.++++.+ .++++++
T Consensus       266 ~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~  307 (432)
T 3a9z_A          266 PLYPMLFGGGQE-------------------------------------RNFRPGTENTPMIAGLGKAADLV-SENCETY  307 (432)
T ss_dssp             CCCCSCCSSCGG-------------------------------------GGTSCSCCCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             CcCceeecCCcc-------------------------------------ccccCCCcCHHHHHHHHHHHHHH-HhhHHHH
Confidence            111111111000                                     00000001111123344455543 3478889


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEe--CC----CC-ceeEEEEEcCCchHHHHHHHHHh----ccCcEEEEEeE-------
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELV--CP----PS-MGLVCFRLKGDNDLTNQLYERLM----SHKQIYIIKAS-------  316 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~--~~----~~-~~~v~f~~~~~~~~~~~l~~~L~----~~g~~~~~~~~-------  316 (367)
                      .++..++++++.+.|++++|+++.  .+    .. .+.++|.+.+......++.+.+.    ..|.. +.+..       
T Consensus       308 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~-~~~~~~~~~~~~  386 (432)
T 3a9z_A          308 EAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGAS-CHSDHEDRPSPV  386 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCG-GGGGGTTSCCHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEecccc-ccCCCCCCccHH
Confidence            999999999999999886564432  33    12 23677877642112345555442    11211 00000       


Q ss_pred             --ECC------eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         317 --FQG------RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       317 --~~~------~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                        ..|      ..++|+++ ..+++++|+++++++|+++++++..
T Consensus       387 l~~~g~~~~~~~~~iRis~-~~~~t~eei~~~~~~l~~~~~~~~~  430 (432)
T 3a9z_A          387 LLSCGIPVDVARNAVRLSV-GRSTTRAEVDLIVQDLKQAVNQLEG  430 (432)
T ss_dssp             HHHTTCCHHHHTTEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhcCCCccccCceEEEEc-CCCCCHHHHHHHHHHHHHHHHHhcC
Confidence              001      25899976 5778899999999999999887654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.86  E-value=2.6e-20  Score=177.88  Aligned_cols=269  Identities=14%  Similarity=0.089  Sum_probs=176.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...+++..|++++.+++++ ++.+|+++|++++++.+      .+|+   ++|++|.+.|+++|.++
T Consensus        78 gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~------~~v~---~~n~tG~~~~l~~i~~l  148 (388)
T 1b9h_A           78 GTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRT------KVIM---PVHMAGLMADMDALAKI  148 (388)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTE------EEEC---CBCGGGCCCCHHHHHHH
T ss_pred             cCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCc------eEEE---EeCCccCcCCHHHHHHH
Confidence            34677889999999999999999999999975 48999999999986544      2444   78899999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchh--hhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH--LTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~--~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++|+|++|+.+.......   +.....+++++++.||++.++ ..|+++.++...  +....... .   .+..
T Consensus       149 a~~~~~~li~D~a~~~g~~~~~~~---~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~-~---~~~~  220 (388)
T 1b9h_A          149 SADTGVPLLQDAAHAHGARWQGKR---VGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRH-S---CGRP  220 (388)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTEE---GGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHT-B---TTCC
T ss_pred             HHHcCCEEEEecchhcCCccCCee---cccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHH-h---CCCC
Confidence            999999999999998654332110   111223588888899999875 467777765433  33221000 0   0000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                         .....|                .  ....|          ...+...+..++.+.  ..+.+++..++..++++++.
T Consensus       221 ---~~~~~~----------------~--~~~~g----------~~~~~~~~~~a~~~~--~~~~l~~~~~~~~~~~~~l~  267 (388)
T 1b9h_A          221 ---RDDRRY----------------F--HKIAG----------SNMRLNEFSASVLRA--QLARLDEQIAVRDERWTLLS  267 (388)
T ss_dssp             ---TTCSSC----------------C--CCSCC----------CBCBCBHHHHHHHHH--HHTTHHHHHHHHHHHHHHHH
T ss_pred             ---ccCccc----------------e--eeccc----------ccCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence               000000                0  00000          000112222222222  23456777888889999999


Q ss_pred             HHhcCCCCeEEeCC-----C-CceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEEC---------------------
Q psy3048         267 DLVEKDDRFELVCP-----P-SMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQ---------------------  318 (367)
Q Consensus       267 ~~L~~~~g~~~~~~-----~-~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~---------------------  318 (367)
                      +.|++++|+++..+     + ..+.+++++++.. ....++.+.|.++|+. +......                     
T Consensus       268 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (388)
T 1b9h_A          268 RLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLP-AFAAFRAIYRTDAFWELGAPDESVDAIA  346 (388)
T ss_dssp             HHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCC-EEECCCCGGGSHHHHHSSCCSSCHHHHH
T ss_pred             HHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCC-cccccCccccChHhHhcCCCcccccccc
Confidence            99999989988753     2 2467788876421 2456899999988854 3321110                     


Q ss_pred             ---------CeeEEEEEecCCCC-CHHHHHHHHHHHHHHHHH
Q psy3048         319 ---------GRPFLRFVVTSPET-NQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       319 ---------~~~~lRi~~~~~~~-~~edid~li~~l~~~~~~  350 (367)
                               ....+|+++ ++.+ |++||++++++|++++++
T Consensus       347 ~~~~~~~~~~~~~l~l~~-~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          347 RRCPNTDAISSDCVWLHH-RVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             HTCHHHHHHHHHEEEEEG-GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhCeEEecC-CCCCCCHHHHHHHHHHHHHHHhh
Confidence                     013699965 5677 899999999999998764

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.85  E-value=4.3e-21  Score=180.59  Aligned_cols=262  Identities=16%  Similarity=0.131  Sum_probs=173.7

Q ss_pred             CceEEEecCCcchhHHHH--HHhC--CcceEEEecCCCCCcCHHHHHH-HHHHHh-hCCCccEEEEEecCCCcccc---c
Q psy3048          29 SRLVAYASDQSNSSVEKS--AIIG--DVPVRQLRSDDNGVLRGDALLT-AVKEDL-AKGLIPCCLVATLGTTGTCA---F   99 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~--~~~~--g~~v~~v~~~~~~~~d~~~L~~-~l~~~~-~~~~~~~~vv~~~~~t~~G~---i   99 (367)
                      +.-.|++++..|++...+  +...  |++++.++.+ ++.+|+++|++ ++++.. .++..+.+|+++++++ +|.   .
T Consensus        82 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~  159 (356)
T 1v72_A           82 PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTL  159 (356)
T ss_dssp             TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCH
T ss_pred             CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCH
Confidence            345677888999998766  6666  9999999875 57899999999 886521 1112246788888754 999   6


Q ss_pred             CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCc
Q psy3048         100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       100 ~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      +++++|.++|++||+++|+|++|+.+............++ ..+|++++++||+ +.|.|+|+++.+ ++......    
T Consensus       160 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~-~~~~~~~~----  233 (356)
T 1v72_A          160 DEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFN-TSLATEMS----  233 (356)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESS-GGGHHHHH----
T ss_pred             HHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEEC-HHHHhhHH----
Confidence            7899999999999999999999975422110001111111 1458999999999 668777787763 33332211    


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                       ++... .   + .  .                                 . .  .........++.+....+.++.++.
T Consensus       234 -~~~~~-~---~-~--~---------------------------------~-~--~~~~~~~~~~~~l~~~~~~~~~~~~  269 (356)
T 1v72_A          234 -YRRKR-A---G-H--L---------------------------------S-S--KMRFLSAQIDAYLTDDLWLRNARKA  269 (356)
T ss_dssp             -HHHHH-T---T-C--C---------------------------------C-S--STHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred             -HHhhc-c---C-c--h---------------------------------h-h--hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence             00000 0   0 0  0                                 0 0  0012222334444444566778888


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHH
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid  338 (367)
                      .++++++.+.|++++|+++..++..+.++++++      .++.++|.++|+. +.++.+. ..++|+++ +..++++|++
T Consensus       270 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~------~~~~~~l~~~gi~-v~~g~~~-~~~iRi~~-~~~~~~~~i~  340 (356)
T 1v72_A          270 NAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------SAMIDALLKAGFG-FYHDRWG-PNVVRFVT-SFATTAEDVD  340 (356)
T ss_dssp             HHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------HHHHHHHHHTTCB-CBCSSSS-TTEEEEEC-CTTCCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC------HHHHHHHHhcCeE-EeccccC-CCeEEEEe-cCCCCHHHHH
Confidence            999999999999988999877777777777663      3688888888854 3322222 56899964 5778899999


Q ss_pred             HHHHHHHHHHHHh
Q psy3048         339 FAWNEISHQSSEM  351 (367)
Q Consensus       339 ~li~~l~~~~~~~  351 (367)
                      +++++|++++++.
T Consensus       341 ~~~~~l~~~l~~~  353 (356)
T 1v72_A          341 HLLNQVRLAADRT  353 (356)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999886654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.85  E-value=6.5e-21  Score=181.95  Aligned_cols=261  Identities=9%  Similarity=0.011  Sum_probs=174.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.+.  ++.+|+++|++++++.+      .+|++++++|++|.+   +++++
T Consensus       114 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~  187 (388)
T 1j32_A          114 GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNPTGMVYTPDEVRA  187 (388)
T ss_dssp             TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCc------eEEEEeCCCCCCCcCCCHHHHHH
Confidence            34677788999999999999999999999864  67899999999987543      478889999999998   45999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCC----CCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~  178 (367)
                      |+++|++||+++++|++|+.+.+....... +..+    ...|+++.+.||+++ ++|  +|+++.++. .......   
T Consensus       188 i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~-~~~~l~~---  261 (388)
T 1j32_A          188 IAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGPVP-LVKAATK---  261 (388)
T ss_dssp             HHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECCHH-HHHHHHH---
T ss_pred             HHHHHHHcCCEEEEEccchhcccCCCCCCC-HHHccccccCCEEEEeechhccC-CcccceEEEEeCHH-HHHHHHH---
Confidence            999999999999999999875542211000 0001    124899999999995 345  888887532 2221100   


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                       +.....                                        +.   ...+....+..++.. +.+.+++..++.
T Consensus       262 -~~~~~~----------------------------------------~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~  296 (388)
T 1j32_A          262 -IQGHST----------------------------------------SN---VCTFAQYGAIAAYEN-SQDCVQEMLAAF  296 (388)
T ss_dssp             -HHHTTT----------------------------------------CS---CCHHHHHHHHHHHHS-CSHHHHHHHHHH
T ss_pred             -HHhhcc----------------------------------------cC---CCHHHHHHHHHHHhC-CcHHHHHHHHHH
Confidence             000000                                        00   000111222233332 345678888899


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-ECCeeEEEEEecCCCCCHHH
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-FQGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~~~~~~lRi~~~~~~~~~ed  336 (367)
                      .++++++.+.|++++|+++..+.....+.+.++.......++.+.|.+ .|+ .+.++. +....++|+++.   +++++
T Consensus       297 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~iRis~~---~~~~~  372 (388)
T 1j32_A          297 AERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQV-ATVPGAAFGADDCIRLSYA---TDLDT  372 (388)
T ss_dssp             HHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCE-ECEEGGGGTCTTBEEEECC---SCHHH
T ss_pred             HHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCE-EEeChhhhCCCCcEEEEec---CCHHH
Confidence            999999999999988888765443223333443101135678888876 574 444332 222468999763   58999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3048         337 VAFAWNEISHQSSEM  351 (367)
Q Consensus       337 id~li~~l~~~~~~~  351 (367)
                      ++++++.|+++++++
T Consensus       373 i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          373 IKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.85  E-value=2.4e-20  Score=176.68  Aligned_cols=247  Identities=14%  Similarity=0.042  Sum_probs=172.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCccccc---CChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAF---DNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~  106 (367)
                      -.|+++..+|.++...++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+   +++++|+
T Consensus       110 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~l~~i~  183 (367)
T 3euc_A          110 AKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQP------AIVYLAYPNNPTGNLFDAADMEAIV  183 (367)
T ss_dssp             CEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCC------SEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCC------CEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            4566778899999999999999999999988899999999999987 44      377788999999999   4688888


Q ss_pred             HHHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++|  |+++++|++|+.+....  ...... ....++++.+.+|++..+.++|+++.. ++...........     
T Consensus       184 ~~~~~~~~~~~li~De~~~~~~~~~--~~~~~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~-----  254 (367)
T 3euc_A          184 RAAQGSVCRSLVVVDEAYQPFAQES--WMSRLT-DFGNLLVMRTVSKLGLAGIRLGYVAGD-PQWLEQLDKVRPP-----  254 (367)
T ss_dssp             HHTBTTSCBCEEEEECTTCCSSSCC--SGGGGG-TCTTEEEEEECCCTTSCSCCEEEEEEC-HHHHHHHGGGCCS-----
T ss_pred             HhhhhcCCCcEEEEeCcchhhcccc--hHHHHh-hCCCEEEEecchhhcccccCceeeeeC-HHHHHHHHHhCCC-----
Confidence            889999  99999999998643211  111111 112357888999994444567887773 3333221110000     


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                |                               .   ...+....+..+++.  .+.+++..++..+++++
T Consensus       255 ----------~-------------------------------~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~  288 (367)
T 3euc_A          255 ----------Y-------------------------------N---VNVLTEATALFALEH--VAVLDEQAAQLRAERSR  288 (367)
T ss_dssp             ----------S-------------------------------C---CCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             ----------C-------------------------------C---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHH
Confidence                      0                               0   000112233333333  45678888999999999


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.+.|+++||+++ .++..+.+.+.++    ...++.+.|.++|+. +.+...   .+..++|+++.    +++|+++++
T Consensus       289 l~~~l~~~~g~~~-~~~~~~~~~~~~~----~~~~l~~~l~~~gi~-v~~~~~~~~~~~~~iRis~~----~~~~i~~~~  358 (367)
T 3euc_A          289 VAEGMAAHGGVTV-FPSAANFLLARVP----DAAQTFDRLLARKVL-IKNVSKMHPLLANCLRVTVS----TPEENAQFL  358 (367)
T ss_dssp             HHHHHHTSTTCEE-CCCSSSEEEEECS----CHHHHHHHHHTTTEE-CEECGGGCGGGTTEEEEECC----CHHHHHHHH
T ss_pred             HHHHHHhCCCcEE-CCCCCeEEEEECC----CHHHHHHHHHHCCeE-EEECCccCCCCCCEEEEecC----CHHHHHHHH
Confidence            9999999999985 4555566667665    256888889888854 443321   12469999753    799999999


Q ss_pred             HHHHHHH
Q psy3048         342 NEISHQS  348 (367)
Q Consensus       342 ~~l~~~~  348 (367)
                      ++|++++
T Consensus       359 ~~l~~~l  365 (367)
T 3euc_A          359 EAFAASL  365 (367)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999875

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.85  E-value=1.5e-20  Score=178.44  Aligned_cols=263  Identities=10%  Similarity=0.084  Sum_probs=176.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|+++..+|.++..+++..|++++.++.++++.+|+++|++++++.+      .+|+   ++|++|.+.|+++|.++|
T Consensus        78 gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~---~~n~~G~~~~~~~i~~~~  148 (374)
T 3uwc_A           78 GDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDKT------KAIM---PVHYTGNIADMPALAKIA  148 (374)
T ss_dssp             TCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTE------EEEC---CBCGGGCCCCHHHHHHHH
T ss_pred             CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCc------eEEE---EeCCcCCcCCHHHHHHHH
Confidence            4467788899999999999999999999998789999999999887644      3444   678999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.......    .+ ...|++++++|  |+++++...|+++.+++.........    ...+.. 
T Consensus       149 ~~~~~~li~D~~~~~g~~~~~~~----~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~----~~~~~~-  218 (374)
T 3uwc_A          149 KKHNLHIVEDACQTILGRINDKF----VG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLY----RNHGLI-  218 (374)
T ss_dssp             HHTTCEEEEECTTCTTCEETTEE----TT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHH----TBTTEE-
T ss_pred             HHcCCEEEEeCCCccCceeCCee----cc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHH----HhcCcc-
Confidence            99999999999998654422110    11 12499999977  99976444666666554433221100    000000 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                           ..|                            .  ....+..+....+.+++.....++++++.++..++++++.+
T Consensus       219 -----~~~----------------------------~--~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~  263 (374)
T 3uwc_A          219 -----NRD----------------------------V--CVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQ  263 (374)
T ss_dssp             -----ETT----------------------------E--ESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             -----ccC----------------------------c--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000                            0  00000011123444455555567788899999999999999


Q ss_pred             HhcCCCC-eEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE------------------------CC
Q psy3048         268 LVEKDDR-FELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF------------------------QG  319 (367)
Q Consensus       268 ~L~~~~g-~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------------------------~~  319 (367)
                      .|+++++ +++...+.   .....|.+..  ....++.+.|.++|+. +.+...                        ..
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (374)
T 3uwc_A          264 SFVDLSEFIDVPVRREGVYHVFHIYVLRV--KYRDQLFQYLKDNGIE-VKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHG  340 (374)
T ss_dssp             HTGGGTTTEECCCCCTTEECCCSSEEEEE--TTHHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHH
T ss_pred             HhccCCCeEEeccCCCCCceeeEEEEEEc--CCHHHHHHHHHHCCCc-cccCCCCccccChhhhhcCCccCCCccHHHHH
Confidence            9999988 88754321   1112222221  1256888899888853 332210                        00


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ...+|++ .+.++|++||++++++|++++++
T Consensus       341 ~~~lrl~-~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          341 EAVITLP-AHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHEEEEC-CCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             hCEEEcc-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            2689995 57888999999999999999875

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.85  E-value=3.2e-20  Score=174.71  Aligned_cols=261  Identities=15%  Similarity=0.101  Sum_probs=172.5

Q ss_pred             CceEEEecCCcchhHHHH--HHhCCcceEEEecCCCCCcCHHHHHHHHHHHh-hCCCccEEEEEecCCCcccccCC---h
Q psy3048          29 SRLVAYASDQSNSSVEKS--AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL-AKGLIPCCLVATLGTTGTCAFDN---L  102 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~--~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~-~~~~~~~~vv~~~~~t~~G~i~d---l  102 (367)
                      +.-.|++++.+|.+...+  ++..|++++.++.+ ++.+|+++|++++++.. +++..+.+|+++++ |++|.+.|   +
T Consensus        89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l  166 (359)
T 1svv_A           89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQEL  166 (359)
T ss_dssp             TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHH
T ss_pred             CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHH
Confidence            345788889999998873  77789999999985 78999999999998751 12223467888887 68999988   9


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++|.++|++||+++++|++|.++.+.........-++ ..+|++++++||+ +.|.|+|++++++ +......    .+.
T Consensus       167 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~-~~~~~~~----~~~  240 (359)
T 1svv_A          167 EDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND-ALKPNAR----HLI  240 (359)
T ss_dssp             HHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG-GGCTTHH----HHH
T ss_pred             HHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc-cHHHHHH----HHH
Confidence            9999999999999999999943321110000000000 2359999999998 4578889888743 2222110    000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      .....     .  +                                 ..+. .....+   ...+...++++..++..++
T Consensus       241 ~~~~~-----~--~---------------------------------~~~~-~~~~~~---~~~l~~~~~~~~~~~~~~~  276 (359)
T 1svv_A          241 KQRGA-----L--M---------------------------------AKGW-LLGIQF---EVLMKDNLFFELGAHSNKM  276 (359)
T ss_dssp             HHTTC-----C--C---------------------------------TTTH-HHHHHH---HHHTSTTHHHHHHHHHHHH
T ss_pred             hcCCc-----c--c---------------------------------ccch-hhHHHH---HHHHhhhhHHHHHHHHHHH
Confidence            00000     0  0                                 0000 001111   1234445678888999999


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      ++++.+.| +.+|+++..++..+.+++.++      .++.++|.++ |+.. .+....+..++|+++ +..++++|++++
T Consensus       277 ~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gi~v-~~~~~~~~~~iRi~~-~~~~~~~~i~~~  347 (359)
T 1svv_A          277 AAILKAGL-EACGIRLAWPSASNQLFPILE------NTMIAELNNDFDMYT-VEPLKDGTCIMRLCT-SWATEEKECHRF  347 (359)
T ss_dssp             HHHHHHHH-HHTTCCBSSCCSSSEECBEEE------HHHHHHHTTTEECEE-EEEETTTEEEEEEEC-CTTCCHHHHHHH
T ss_pred             HHHHHHHh-ccCCeEEccCCccceEEEEcC------HHHHHHHHHhcCEEE-EecccCCCceEEEEc-cCcCCHHHHHHH
Confidence            99999999 567888776666666655543      4788889888 7543 222123567999964 566789999999


Q ss_pred             HHHHHHHHHH
Q psy3048         341 WNEISHQSSE  350 (367)
Q Consensus       341 i~~l~~~~~~  350 (367)
                      +++|++++++
T Consensus       348 ~~~l~~~~~~  357 (359)
T 1svv_A          348 VEVLKRLVAS  357 (359)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHhc
Confidence            9999988664

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.85  E-value=7.8e-20  Score=175.16  Aligned_cols=260  Identities=12%  Similarity=0.014  Sum_probs=178.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++..|.+...+++..|++++.++.     +|+++|++++++...  ..+.+|++++++|++|.+.|+++|.++|
T Consensus       127 gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~~~~l~~~~  199 (398)
T 3a2b_A          127 NDYILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVNLPELTSIA  199 (398)
T ss_dssp             TCEEEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred             CCEEEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc--CCceEEEEeCCCCCCCCccCHHHHHHHH
Confidence            446777889999999999999999999986     589999999976321  0246888899999999999999999999


Q ss_pred             hhcCcEEEEecccccccccC-hhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLL-PEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+.. ........++ +++|+++.+.||+++ |+| |+++.+ ++...........+....   
T Consensus       200 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~~---  273 (398)
T 3a2b_A          200 NEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGD-ADVIDFLKHNARSVMFSA---  273 (398)
T ss_dssp             HHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEEC-HHHHHHHHHHCHHHHSSB---
T ss_pred             HHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeC-HHHHHHHHHhcccceecC---
Confidence            99999999999997664311 0000111122 235999999999998 667 888774 333322111011111000   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                 +..... ..+..+++..  +.+++..++..++++++.
T Consensus       274 -------------------------------------------~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~  308 (398)
T 3a2b_A          274 -------------------------------------------SMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAK  308 (398)
T ss_dssp             -------------------------------------------CCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHH
Confidence                                                       000111 1223444442  235677788889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC----CeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ----GRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~----~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|+++ |+++.. +..+.+.+.++. .....++.+.|.++|+ .+.+....    +..++|+++ ..+++++|++++++
T Consensus       309 ~~L~~~-g~~~~~-~~g~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~iRis~-~~~~~~e~i~~~~~  383 (398)
T 3a2b_A          309 AQLLDH-GFDLGA-TESPILPIFIRS-NEKTFWVTKMLQDDGV-FVNPVVSPAVPAEESLIRFSL-MATHTYDQIDEAIE  383 (398)
T ss_dssp             HHHHHT-TCCBCS-CCSSEEEEECCC-HHHHHHHHHHHHHTTE-ECEEECTTTSCGGGCEEEEEC-CTTCCHHHHHHHHH
T ss_pred             HHHHhc-CCCcCC-CCCCEEEEEcCC-HHHHHHHHHHHHHCCc-EEEeeCCCCCCCCCceEEEEE-eCCCCHHHHHHHHH
Confidence            999887 777654 445677777653 3346689999998874 44443221    356899976 45678999999999


Q ss_pred             HHHHHHHHhh
Q psy3048         343 EISHQSSEMN  352 (367)
Q Consensus       343 ~l~~~~~~~~  352 (367)
                      +|+++++++.
T Consensus       384 ~l~~~l~~~~  393 (398)
T 3a2b_A          384 KMVKVFKQAE  393 (398)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhC
Confidence            9999988764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.84  E-value=5.8e-21  Score=188.13  Aligned_cols=273  Identities=12%  Similarity=0.043  Sum_probs=171.1

Q ss_pred             ceEEEecCCcchhHHHH--------HHhCCcceEEEec--C-CCCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKS--------AIIGDVPVRQLRS--D-DNGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~--------~~~~g~~v~~v~~--~-~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      .-.|++++.+|.+....        +...|..++.++.  + +++.+|+++|+++++ +.+      .+|++ ++++++ 
T Consensus       134 GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~t------klIi~-~~sn~~-  205 (483)
T 1rv3_A          134 HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHP------KLIIA-GTSCYS-  205 (483)
T ss_dssp             TCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCC------SEEEE-CCSSCC-
T ss_pred             CCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCC------cEEEE-eCCcCC-
Confidence            34566677788776432        3334433555554  5 579999999999998 444      46666 777776 


Q ss_pred             ccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048          98 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus        98 ~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      .+.|+++|.++|++||+++++|++|+.+....+.....   +..+|++++++||+|.+|.| |+++++++. ..  +.  
T Consensus       206 ~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p---~~~~div~~s~~K~l~Gprg-G~i~~~~~~-~~--~~--  276 (483)
T 1rv3_A          206 RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP---FEHCHVVTTTTHKTLRGCRA-GMIFYRRGV-RS--VD--  276 (483)
T ss_dssp             SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG---GGTCSEEEEESSGGGCCCSC-EEEEEECSB-CC------
T ss_pred             CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCC---CCCCcEEEecCcccCCCCCc-eEEEEcchh-hh--hc--
Confidence            88899999999999999999999998665432221111   12469999999999999988 999987642 10  00  


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                         ...+.      ...|.+...+.... .|                  ...++... ...++.+++......+++++.+
T Consensus       277 ---~~~g~------~~~y~~~~~~~~~~-~~------------------~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~  328 (483)
T 1rv3_A          277 ---PKTGK------EILYNLESLINSAV-FP------------------GLQGGPHNHAIAGVAVALKQAMTPEFKEYQR  328 (483)
T ss_dssp             --------------CCBCCHHHHHHHHH-TT------------------TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ---cccCc------chhhHHHHHhhhhc-CC------------------cccCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence               00000      00000000000000 00                  00111111 1234556676666668899999


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeE--ECCeeEEEEEecC
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KAS--FQGRPFLRFVVTS  329 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~--~~~~~~lRi~~~~  329 (367)
                      +..++++++.+.|+++ |++++.+. ....+.+.+........++.+.|.+.|+ .+.    ++.  ..+..++|+++. 
T Consensus       329 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI-~v~~~~~pg~~~~~~~~~iRis~~-  405 (483)
T 1rv3_A          329 QVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI-ACNKNTCPGDKSALRPSGLRLGTP-  405 (483)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTE-ECEEECCSSCSCTTSCCEEEEECH-
T ss_pred             HHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCc-EEecCCCCCCCcCCCCceEEeecC-
Confidence            9999999999999988 89987643 2334555553211224567777777774 444    222  113568999764 


Q ss_pred             CCCC----HHHHHHHHHHHHHHHHH
Q psy3048         330 PETN----QCDVAFAWNEISHQSSE  350 (367)
Q Consensus       330 ~~~~----~edid~li~~l~~~~~~  350 (367)
                      .+++    ++|++++++.|+++++.
T Consensus       406 ~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          406 ALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHh
Confidence            3344    99999999999998876

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.84  E-value=8.6e-20  Score=173.38  Aligned_cols=260  Identities=12%  Similarity=0.033  Sum_probs=174.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|+++..+|.++...++..|++++.++.+  .++.+|+++|++++++.+      .+|++++++|++|.+.|   +++
T Consensus       105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~~~~l~~  178 (375)
T 3op7_A          105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT------KMICINNANNPTGAVMDRTYLEE  178 (375)
T ss_dssp             TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTC------CEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCC------eEEEEcCCCCCCCCCCCHHHHHH
Confidence            3457778899999999999999999999886  356799999999997654      47788899999999999   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||+++++|++|+.+.... ... ....+   .++.+.+.+|.++. +.++|+++. +++...... ....+. 
T Consensus       179 i~~la~~~~~~li~De~~~~~~~~~~~~~-~~~~~---~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~-~~~~~~-  251 (375)
T 3op7_A          179 LVEIASEVGAYILSDEVYRSFSELDVPSI-IEVYD---KGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILR-DYRDYT-  251 (375)
T ss_dssp             HHHHHHTTTCEEEEECCSCCCSSSCCCCH-HHHCT---TEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHT-TTGGGT-
T ss_pred             HHHHHHHcCCEEEEEcccccccccCCCch-hhhcC---CEEEEeEChhhcCCcccceEEEEe-CHHHHHHHH-HHHhhh-
Confidence            9999999999999999998754421 111 11122   26778889999973 355688777 444333221 100000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                                                                  . .....+....+..++.. ..+.+++..++..+++
T Consensus       252 --------------------------------------------~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~  285 (375)
T 3op7_A          252 --------------------------------------------M-ICAGVFDDLVAQLALAH-YQEILERNRHILEENL  285 (375)
T ss_dssp             --------------------------------------------T-SCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------c-cCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence                                                        0 00011112222333332 2345667777778899


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +++.+.|++++++.+..+.....+.+.++. .....++.++|. +.|+ .+.++ .+....++|+++..   +.++++.+
T Consensus       286 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi-~v~~g~~~~~~~~iRi~~~~---~~~~i~~~  360 (375)
T 3op7_A          286 AILDQWIEEEPLVSYIRPAVVSTSFVKIAV-DMPMEDFCLQLLQEHGV-LLVPGNRFERDGYVRLGFAC---EQETLIKG  360 (375)
T ss_dssp             HHHHHHHHHCTTEEECCCSSSSCEEEEECC-SSCHHHHHHHHHHHHCE-ECEEGGGGTCTTEEEECCCS---CHHHHHHH
T ss_pred             HHHHHHHhhCCCceEecCCCeEEEeEEcCC-CCCHHHHHHHHHHhCCE-EEeChhhhCCCCeEEEEecC---CHHHHHHH
Confidence            999999998889987765544445555543 233567888774 6674 44433 23335699996532   45899999


Q ss_pred             HHHHHHHHHHhhC
Q psy3048         341 WNEISHQSSEMNL  353 (367)
Q Consensus       341 i~~l~~~~~~~~~  353 (367)
                      +++|+++++++.+
T Consensus       361 l~~l~~~l~~~~~  373 (375)
T 3op7_A          361 LEKLSQFLRRFDK  373 (375)
T ss_dssp             HHHHHHHHGGGC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999876543

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.84  E-value=5.5e-21  Score=182.86  Aligned_cols=264  Identities=11%  Similarity=0.059  Sum_probs=175.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +-.|++++.+|.+...+++..|++++.++.+ +++.+|+++|++++++.+      .+|+   ++|++|.+.|+++|.++
T Consensus        96 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~v~---~~n~tG~~~~~~~i~~l  166 (391)
T 3dr4_A           96 GDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRT------KAIM---PVHLYGQICDMDPILEV  166 (391)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTE------EEEC---CBCGGGCCCCHHHHHHH
T ss_pred             cCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCc------eEEE---EECCCCChhhHHHHHHH
Confidence            4467888999999999999999999999997 578999999999987644      3444   35789999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |++||+++++|++|+.+....+...   ..+.++++++++.||++.++ ..|+++.+++.......    .+...+..  
T Consensus       167 ~~~~~~~li~D~a~~~g~~~~~~~~---~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~----~~~~~g~~--  236 (391)
T 3dr4_A          167 ARRHNLLVIEDAAEAVGATYRGKKS---GSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMR----LLRGQGMD--  236 (391)
T ss_dssp             HHHTTCEEEEECTTCTTCEETTEET---TSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHH----HHHBTTCC--
T ss_pred             HHHcCCEEEEECcccccceECCeee---cccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHH----HHHhcCCC--
Confidence            9999999999999986554332211   11223466677789999763 45666665543332211    00000000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                        ....+                              +....+..+....+.+++.....++++++.++.+++++++.+.
T Consensus       237 --~~~~~------------------------------~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~  284 (391)
T 3dr4_A          237 --PNRRY------------------------------WFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQK  284 (391)
T ss_dssp             --TTSTT------------------------------CCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcc------------------------------cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000                              0000011122234455555555677888999999999999999


Q ss_pred             hcCCCCeEEeCC--C-----CceeEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEE---------------------CC
Q psy3048         269 VEKDDRFELVCP--P-----SMGLVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASF---------------------QG  319 (367)
Q Consensus       269 L~~~~g~~~~~~--~-----~~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~---------------------~~  319 (367)
                      |+++ |+++..+  +     ...++.+.++.. .....++.+.|.++|+. +.+...                     ..
T Consensus       285 L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~-v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  362 (391)
T 3dr4_A          285 LARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIE-SRPVFHPMHIMPPYAHLATDDLKIAEACG  362 (391)
T ss_dssp             HGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCC-CEECCCCGGGSGGGGGGCCTTCHHHHHHH
T ss_pred             hhcC-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCc-eeecCCccccChhhhhcCcCCChHHHHHH
Confidence            9998 8877654  2     223456666431 12356899999999854 333210                     01


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ...+|++ .++++|++||++++++|+++
T Consensus       363 ~~~lrl~-~~~~~t~edi~~~~~~l~~~  389 (391)
T 3dr4_A          363 VDGLNLP-THAGLTEADIDRVIAALDQV  389 (391)
T ss_dssp             HHEEEEC-CCTTCCHHHHHHHHHHHHTT
T ss_pred             hCeEEcc-CCCCCCHHHHHHHHHHHHHH
Confidence            3579994 57889999999999999875

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.84  E-value=8.6e-20  Score=175.02  Aligned_cols=260  Identities=15%  Similarity=0.073  Sum_probs=177.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++..+|.+...+++..|++++.++.+     |+++|+++++....  ..+.+|++++++|++|.+.|+++|.++|+
T Consensus       133 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~  205 (401)
T 2bwn_A          133 LIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAE  205 (401)
T ss_dssp             CEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             CEEEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence            367778899999999999999999999875     89999999874321  12468899999999999999999999999


Q ss_pred             hcCcEEEEecccccccccCh--hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLP--EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +||+++++|++|+.+.+...  .... ..++ ...|.+..+.+|+++.| | |+++.. +............+...    
T Consensus       206 ~~~~~li~Dea~~~g~~~~~g~~~~~-~~~~~~~~~i~~~s~sK~~~~~-G-G~~~~~-~~~~~~l~~~~~~~~~~----  277 (401)
T 2bwn_A          206 EFGALTYIDEVHAVGMYGPRGAGVAE-RDGLMHRIDIFNGTLAKAYGVF-G-GYIAAS-ARMVDAVRSYAPGFIFS----  277 (401)
T ss_dssp             HHTCEEEEECTTTTTTSSTTSCCHHH-HHTCGGGCSEEEEESSSTTCSC-C-EEEEEC-HHHHHHHHHHCHHHHTS----
T ss_pred             HcCCEEEEeccccccccCCCCceeee-ccCccccCcEEEeechhhccCC-C-CEEecC-HHHHHHHHHhCcCceec----
Confidence            99999999999985543110  0111 1122 23488888999999864 3 666653 33222110001111100    


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                              .. .....+.++.++++.+...|++++.++..++++++.+
T Consensus       278 ----------------------------------------~~-~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  316 (401)
T 2bwn_A          278 ----------------------------------------TS-LPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKM  316 (401)
T ss_dssp             ----------------------------------------BC-CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence                                                    00 0112234555667666666778889999999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .|+++ |+++.. +..+++++.++. .....++.+.|. +.|+ .+.+...    .+..++|+++ +.+++++|++++++
T Consensus       317 ~L~~~-g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~L~~~~gi-~v~~~~~~~~~~~~~~iRis~-~~~~t~~~i~~~~~  391 (401)
T 2bwn_A          317 RLKAL-GMPIID-HGSHIVPVVIGD-PVHTKAVSDMLLSDYGV-YVQPINFPTVPRGTERLRFTP-SPVHDLKQIDGLVH  391 (401)
T ss_dssp             HHHHH-TCCBCC-CSSSCEEEECCC-HHHHHHHHHHHHHHHCE-ECCEECTTTSCTTCCEEEECC-CTTSCHHHHHHHHH
T ss_pred             HHHHC-CCcccC-CCCCeEEEEeCC-hHHHHHHHHHHHhcCCE-EEeecCCCCCCCCCceEEEEe-eCCCCHHHHHHHHH
Confidence            99887 877664 445678887753 334568888886 6674 4433321    1335899966 56789999999999


Q ss_pred             HHHHHHHHh
Q psy3048         343 EISHQSSEM  351 (367)
Q Consensus       343 ~l~~~~~~~  351 (367)
                      +|+++++++
T Consensus       392 ~l~~~~~~~  400 (401)
T 2bwn_A          392 AMDLLWARC  400 (401)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHhc
Confidence            999986643

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.84  E-value=3e-20  Score=178.64  Aligned_cols=260  Identities=11%  Similarity=-0.011  Sum_probs=175.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++
T Consensus       125 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~nptG~~~~~~~l~~  198 (406)
T 1xi9_A          125 GDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEE  198 (406)
T ss_dssp             TCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCc------eEEEEECCCCCCCCCcCHHHHHH
Confidence            34677788899999999999999999999863  57799999999987643      47778899999999865   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhhhhCCCCCc-ceeeeccccccccC-CcceeEEE-ecc----hhhhhhcc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYV-DSFAFNAHKWLLTN-HDCSAMWV-KNA----NHLTNTFF  175 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~-D~~~~~~hK~l~~p-~g~g~l~~-~~~----~~~~~~~~  175 (367)
                      |.++|++||+++++|++|+.+.+...  .... + + ... |+++.+.||+++.| ..+|++++ .++    +.......
T Consensus       199 i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~-~-~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~  275 (406)
T 1xi9_A          199 ILNIAGEYEIPVISDEIYDLMTYEGEHISPGS-L-T-KDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDR  275 (406)
T ss_dssp             HHHHHHHHTCCEEEECTTTTCBSSSCCCCHHH-H-C-SSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEEcCccccccCCCCCCHHH-c-C-CCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHH
Confidence            99999999999999999987654211  1111 1 1 234 67888999999732 34888883 233    33322110


Q ss_pred             CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHH
Q psy3048         176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       176 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                       ...+. ..                                              ...+....+.++++. +.+++++..
T Consensus       276 -~~~~~-~~----------------------------------------------~~~~~~~a~~~~l~~-~~~~~~~~~  306 (406)
T 1xi9_A          276 -LARIR-LC----------------------------------------------PNTPAQFAAIAGLTG-PMDYLKEYM  306 (406)
T ss_dssp             -HHHHT-CC----------------------------------------------SCSHHHHHHHHHHHS-CCHHHHHHH
T ss_pred             -HHHhh-cC----------------------------------------------CCHHHHHHHHHHHhC-CcHHHHHHH
Confidence             00000 00                                              000112233334432 344578888


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeE-EEEEcCC-chHHHHHHHHHh-ccCcEEEEEeE-EC--CeeEEEEEecC
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLV-CFRLKGD-NDLTNQLYERLM-SHKQIYIIKAS-FQ--GRPFLRFVVTS  329 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v-~f~~~~~-~~~~~~l~~~L~-~~g~~~~~~~~-~~--~~~~lRi~~~~  329 (367)
                      ++..++++++.+.|+++||+++..+. .+.+ .+.++.. .....++.+.|. ++|+ .+.+.. +.  +..++|+++. 
T Consensus       307 ~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi-~v~~g~~f~~~~~~~lRis~~-  383 (406)
T 1xi9_A          307 KKLKERRDYIYKRLNEIPGISTTKPQ-GAFYIFPKIEVGPWKNDKEFVLDVLHNAHV-LFVHGSGFGEYGAGHFRAVFL-  383 (406)
T ss_dssp             HHHHHHHHHHHHHHHTSTTEECCCCC-BSSEECCEECSCSCSSHHHHHHHHHHHHCE-ECEEGGGGCGGGTTBEEEECC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCeeecCC-eeEEEEEecCccCCCCHHHHHHHHHHhCCE-EEeCchhcCCCCCCEEEEEec-
Confidence            88999999999999998898876443 3433 3355420 123567888887 6774 444332 21  2468999763 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~~  352 (367)
                        +++++++++++.|+++++++.
T Consensus       384 --~~~~~i~~~~~~l~~~l~~~~  404 (406)
T 1xi9_A          384 --PPIEILEEAMDRFEKFMKERL  404 (406)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHC-
T ss_pred             --CCHHHHHHHHHHHHHHHHHHh
Confidence              789999999999999987653

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.84  E-value=4e-19  Score=170.96  Aligned_cols=255  Identities=14%  Similarity=0.058  Sum_probs=175.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++..|.+...++...|++++.++.     +|+++|++++++..     +.+|++++++|++|.+.|+++|.++|
T Consensus       143 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la  212 (409)
T 3kki_A          143 NTNVYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNIS  212 (409)
T ss_dssp             TCEEEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred             CCEEEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHH
Confidence            446777899999999999999999988765     48999999998752     24888899999999999999999999


Q ss_pred             hhcCcEEEEecccccccccCh--hhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLP--EYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||+++++|++|+.+.+...  ..... .++ ..+|+++.+.+|+++.+  .|+++.+. ............+....  
T Consensus       213 ~~~~~~li~De~~~~g~~g~~g~~~~~~-~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~~~~~~~~~~~~~~~--  286 (409)
T 3kki_A          213 KEFGCALLVDESHSLGTHGPNGAGLLAE-LGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVNRCVPFISYPAIFSS--  286 (409)
T ss_dssp             HHHTCEEEEECTTTTTTSSGGGCCHHHH-HTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGGGTHHHHCHHHHHSB--
T ss_pred             HHcCCEEEEECCccccccCCCCCcchhh-cCCCCCCCEEEeecchhhCCC--ceEEEECH-HHHHHHHHhCcCccccC--
Confidence            999999999999987543210  01111 122 24689999999999865  36666543 32221111111111110  


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                . .......++.++++....  .+++.++..++++++.
T Consensus       287 ------------------------------------------~-~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~  321 (409)
T 3kki_A          287 ------------------------------------------T-LLPYEAAGLETTLEIIES--ADNRRQHLDRMARKLR  321 (409)
T ss_dssp             ------------------------------------------C-CCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------C-CcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence                                                      0 000112233344443322  2567778889999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE----ECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS----FQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.|+++ |+++.  +..+.+.+.++. .....++.++|.++|++ +.+..    ..+..++|+++ ...++++|++++++
T Consensus       322 ~~L~~~-g~~~~--~~~~~~~~~~~~-~~~~~~~~~~L~~~Gv~-v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~~~  395 (409)
T 3kki_A          322 IGLSQL-GLTIR--SESQIIGLETGD-ERNTEKVRDYLESNGVF-GSVFCRPATSKNKNIIRLSL-NSDVNDEQIAKIIE  395 (409)
T ss_dssp             HHHHTT-TCCCC--CSSSEEEEEEES-HHHHHHHHHHHHHTTEE-CEEECTTSSCTTCEEEEEEC-CTTCCHHHHHHHHH
T ss_pred             HHHHHc-CCccC--CCCCEEEEEeCC-HHHHHHHHHHHHHCCce-EeeeCCCCcCCCCcEEEEEc-cCCCCHHHHHHHHH
Confidence            999987 77654  355677777754 33456789999999854 43322    23467999976 46778999999999


Q ss_pred             HHHHHHHHh
Q psy3048         343 EISHQSSEM  351 (367)
Q Consensus       343 ~l~~~~~~~  351 (367)
                      +|++++++.
T Consensus       396 ~l~~~l~~~  404 (409)
T 3kki_A          396 VCSDAVNYG  404 (409)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHhcC
Confidence            999998764

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.84  E-value=3.8e-19  Score=167.83  Aligned_cols=251  Identities=12%  Similarity=0.083  Sum_probs=174.9

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGPI  108 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~l  108 (367)
                      .|+++..+|.++...++..|++++.++.++++.+++++|++++++ +      .+|++++++|++|.+.|   +++|+++
T Consensus       100 ~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l~~i~~~  172 (361)
T 3ftb_A          100 KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-V------DSVIIGNPNNPNGGLINKEKFIHVLKL  172 (361)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-C------SEEEEETTBTTTTBCCCHHHHHHHHHH
T ss_pred             cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-C------CEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            566677899999999999999999999987788999999999876 4      37889999999999965   6778888


Q ss_pred             HhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|++|+.+... .... ....+....++++.+.+|.++ .+.++|++++.+++...........       
T Consensus       173 ~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~-------  244 (361)
T 3ftb_A          173 AEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP-------  244 (361)
T ss_dssp             HHHHTCEEEEECSSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT-------
T ss_pred             hhhcCCEEEEECcchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC-------
Confidence            88999999999999866552 1000 001111122466778999997 4456788775555444322111000       


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~~l  265 (367)
                              +                               +      ...+...++...+ ..+.+++..++..++++++
T Consensus       245 --------~-------------------------------~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  279 (361)
T 3ftb_A          245 --------W-------------------------------N------INCFAEMAAINCLKDTNYIEESLLWIKKERKRF  279 (361)
T ss_dssp             --------T-------------------------------C------SCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             --------C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                    0                               0      0012222222222 2456788888999999999


Q ss_pred             HHHhcCCCCeE-EeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         266 ADLVEKDDRFE-LVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       266 ~~~L~~~~g~~-~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      .+.|+++|++. +. ++..+.+.+++++  ....++.+.|.++|+ .+.++. +  .+..++|+++.    +++|+++++
T Consensus       280 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~  351 (361)
T 3ftb_A          280 IEELNKIGFIKRVF-SPHANFVLCRLEN--ISGEKLYDSLLKEDI-VIRRCCNFIGLDDSFVRFAIK----DEKKNTKFL  351 (361)
T ss_dssp             HHHHHHSSSEEEEE-CCSSSEEEEEESS--SCHHHHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHH
T ss_pred             HHHHHhCCCCceec-CCCCeEEEEEcCC--CCHHHHHHHHHHCCe-EEeeCccCCCCCCCEEEEEcC----CHHHHHHHH
Confidence            99999999998 55 4455667777764  235789999998874 444432 2  22569999753    688999999


Q ss_pred             HHHHHHHHH
Q psy3048         342 NEISHQSSE  350 (367)
Q Consensus       342 ~~l~~~~~~  350 (367)
                      ++|+++.+.
T Consensus       352 ~~l~~~~~~  360 (361)
T 3ftb_A          352 RALKGVENN  360 (361)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999988654

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.84  E-value=8.8e-21  Score=180.28  Aligned_cols=262  Identities=13%  Similarity=0.082  Sum_probs=170.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...+++..|++++.++.+ +++.+|+++|++++++.+      .+|+   ++|++|.+.|+++|.++
T Consensus        76 gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~---~~n~~G~~~~l~~i~~l  146 (373)
T 3frk_A           76 GDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKT------KAII---AVHLYGQPADMDEIKRI  146 (373)
T ss_dssp             TCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTE------EEEE---EECCTTCCCCHHHHHHH
T ss_pred             cCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCC------eEEE---EECCCcCcccHHHHHHH
Confidence            4468888999999999999999999999987 678999999999987644      3554   45689999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeec--cccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFN--AHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|++|+.+......    ..+ ...|+++++  .||+++++...|+++.++........    .+...+..
T Consensus       147 ~~~~~~~li~D~a~~~g~~~~~~----~~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~----~~~~~g~~  217 (373)
T 3frk_A          147 AKKYNLKLIEDAAQAHGSLYKGM----KVG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIK----ALSNYGSE  217 (373)
T ss_dssp             HHHHTCEEEEECTTCTTCEETTE----ETT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHH----HHHBTTCS
T ss_pred             HHHcCCEEEEECCcccCCEECCE----ecc-ccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHH----HHHhcCcc
Confidence            99999999999999865542211    011 124777777  77999763445666665543332211    00000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..|                            .  ....+..+....+.+++.....++++++.++..++++++.
T Consensus       218 ------~~~----------------------------~--~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~  261 (373)
T 3frk_A          218 ------KKY----------------------------H--HIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYI  261 (373)
T ss_dssp             ------BTT----------------------------B--CCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             ------cCC----------------------------c--cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000                            0  0000001112344455555556778889999999999999


Q ss_pred             HHhcCCCCeEEeCCCC---ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------------C---------C
Q psy3048         267 DLVEKDDRFELVCPPS---MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------------Q---------G  319 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------------~---------~  319 (367)
                      +.|++++ +.+...+.   .+...|.+...  ...++.+.|.++|+. +.....               .         .
T Consensus       262 ~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (373)
T 3frk_A          262 AGINNPN-VIIPVEADYAKHVWYTFVIRSE--KRDELQKYLNNNGIG-TLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIA  337 (373)
T ss_dssp             HHCCCTT-EECCCCCTTEECCCSSEEEEES--SHHHHHHHHHHTTBC-CBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHH
T ss_pred             HHhccCc-eEeccCCCCCceeeEEEEEEeC--CHHHHHHHHHHCCCC-cccCcCCccccChHHHhcCCCCCCCHHHHHHH
Confidence            9999986 76543221   12222322221  256888999988843 331110               0         0


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ...+|++ .++++|++|||+++++|++...+
T Consensus       338 ~~~lrl~-~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          338 NEILSIP-IWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             HHEEEEC-CCTTCCHHHHHHHHHHHHTCC--
T ss_pred             hCEEEcc-CCCCCCHHHHHHHHHHHHHHhhh
Confidence            1589995 57899999999999999887544

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.84  E-value=3.5e-20  Score=189.73  Aligned_cols=278  Identities=13%  Similarity=0.048  Sum_probs=181.4

Q ss_pred             ceEEEecCCcchhHHHH-HHhCCcceEEEecCCC-----CCcCHHHH-----HHHHHHH-hh--CCCcc-EEEEEecCCC
Q psy3048          30 RLVAYASDQSNSSVEKS-AIIGDVPVRQLRSDDN-----GVLRGDAL-----LTAVKED-LA--KGLIP-CCLVATLGTT   94 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~-~~~~g~~v~~v~~~~~-----~~~d~~~L-----~~~l~~~-~~--~~~~~-~~vv~~~~~t   94 (367)
                      .-.|++++.+|.|+..+ +...|+++++++.+.+     +.+|+++|     ++++++. .+  +...| .+++++++ |
T Consensus       213 GD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n  291 (730)
T 1c4k_A          213 GDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T  291 (730)
T ss_dssp             TCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C
T ss_pred             CCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C
Confidence            34678899999999998 8889999998876422     45789888     7777653 11  01123 47777776 5


Q ss_pred             cccccCChhhHHHHHhhcCcEEEEecccccccccChhhhh-hhCCC--CCcc----eeeeccccccccCCcceeEEEecc
Q psy3048          95 GTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGL--EYVD----SFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        95 ~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~--~~~D----~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      ++|.+.|+++|+++||+||+++++|+||+++..+.+.... .....  -.+|    +++.++||++.+|.++|+++++++
T Consensus       292 ~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~  371 (730)
T 1c4k_A          292 YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDS  371 (730)
T ss_dssp             TTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECG
T ss_pred             CCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecch
Confidence            7999999999999999999999999999865444332220 00001  1346    999999999999989999999775


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSY  246 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~  246 (367)
                      ....     ...++..           ..+.....                      .+. ..+.. ....++.++++.+
T Consensus       372 ~l~g-----~~~~i~~-----------~~~~~~~~----------------------~~~-stsp~~~~iaal~aA~~~l  412 (730)
T 1c4k_A          372 HIKG-----QLRYCDH-----------KHFNNSFN----------------------LFM-STSPFYPMYAALDVNAAMQ  412 (730)
T ss_dssp             GGTT-----STTCCCH-----------HHHHHHHH----------------------HHS-CSSCCHHHHHHHHHHHHHH
T ss_pred             hhcC-----cccccCH-----------HHHHHHHH----------------------HhC-CCCCcHHHHHHHHHHHHHH
Confidence            3211     0011100           00000000                      000 00111 1123444555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEeCCCC------------------------------------ce---e-
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEK-DDRFELVCPPS------------------------------------MG---L-  285 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~-~~g~~~~~~~~------------------------------------~~---~-  285 (367)
                      ..++-.+.+++..+++++++++|++ ++|++++.++.                                    .+   + 
T Consensus       413 ~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~id  492 (730)
T 1c4k_A          413 EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVD  492 (730)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEEC
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccC
Confidence            5534466778899999999999988 78999865421                                    00   1 


Q ss_pred             ---EEEEEcC----------CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         286 ---VCFRLKG----------DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       286 ---v~f~~~~----------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                         ++|..++          ......++.+.|.++|+ ++...   +...+|++ .+..+|++|+++++++|+++.++..
T Consensus       493 p~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI-~v~~~---~~~~ir~~-~s~g~t~e~i~~Ll~aL~~i~~~~~  567 (730)
T 1c4k_A          493 PNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGI-IPEKS---DLNSILFL-MTPAETPAKMNNLITQLLQLQRLIE  567 (730)
T ss_dssp             TTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTC-CCSEE---CSSEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCc-EEEEC---CCCeEEEE-eCCCCCHHHHHHHHHHHHHHHHhcc
Confidence               5666632          01235688888988874 33221   34578985 4788899999999999999988764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.84  E-value=1.7e-19  Score=170.50  Aligned_cols=250  Identities=9%  Similarity=0.039  Sum_probs=173.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.+|.++...++..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|+++|.++|
T Consensus       108 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~------~~v~~~~p~nptG~~~~~~~l~~l~  181 (363)
T 3ffh_A          108 TTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKT------TIVWICNPNNPTGNYIELADIQAFL  181 (363)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCC------CEEEEeCCCCCcCCCcCHHHHHHHH
Confidence            3456677789999999999999999999998789999999999997654      5888899999999999999999999


Q ss_pred             hhc--CcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         110 QEY--NIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       110 ~~~--gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +.+  |+++++|++|+.+.. ..... ....+....++++.+.+|+++ .+.++|+++.+ ++...........      
T Consensus       182 ~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~------  253 (363)
T 3ffh_A          182 DRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIAD-KEIIRQLNIVRPP------  253 (363)
T ss_dssp             TTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEEC-HHHHHHHHHTCCS------
T ss_pred             HhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecC-HHHHHHHHHhCCC------
Confidence            887  999999999986543 10000 000011122466778899986 33445888883 3333322111000      


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                               |                               .   ...+....+..+++  ..+.+++..++..++++++
T Consensus       254 ---------~-------------------------------~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l  288 (363)
T 3ffh_A          254 ---------F-------------------------------N---TTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQY  288 (363)
T ss_dssp             ---------C-------------------------------C---CBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_pred             ---------C-------------------------------C---CCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence                     0                               0   00011223333343  2356788888999999999


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      .+.|++++|+++. ++..+.+.++++.   ...++.+.|.++|+ .+.++. +....++|+++.    +++|+++++++|
T Consensus       289 ~~~l~~~~g~~~~-~~~~~~~~~~~~~---~~~~~~~~l~~~gi-~v~~g~~~~~~~~iRis~~----~~~~i~~~~~~l  359 (363)
T 3ffh_A          289 EAFAKRFEKVKLY-PANGNFVLIDLGI---EAGTIFSYLEKNGY-ITRSGAALGFPTAVRITIG----KEEDNSAVIALL  359 (363)
T ss_dssp             HHHHHHCTTCEEC-CCCSSEEEEECSS---CHHHHHHHHHHTTE-ECEETTTTTCTTEEEEECC----CHHHHHHHHHHH
T ss_pred             HHHHhhCCCceEC-CCCCeEEEEECCC---CHHHHHHHHHHCCe-EEEeCccCCCCCeEEEECC----CHHHHHHHHHHH
Confidence            9999997798876 4455667777753   35788899998884 444332 222569999753    799999999999


Q ss_pred             HHH
Q psy3048         345 SHQ  347 (367)
Q Consensus       345 ~~~  347 (367)
                      +++
T Consensus       360 ~~~  362 (363)
T 3ffh_A          360 EKL  362 (363)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.83  E-value=2.7e-19  Score=170.47  Aligned_cols=255  Identities=15%  Similarity=0.066  Sum_probs=173.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|+++...|.++..+++..|++++.++.     +|+++|++++++..+   ...+|++.+++|++|.+.|+++|.++|
T Consensus       123 gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~  194 (384)
T 1bs0_A          123 EDRIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVT  194 (384)
T ss_dssp             TCEEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHH
T ss_pred             CcEEEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHHHH
Confidence            346677889999999999999999998874     489999999875421   135788888999999999999999999


Q ss_pred             hhcCcEEEEeccccccccc-C-hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALL-L-PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~-~-~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+. . .... ...+. ..|+++.+.||+++ |+| |+++.+ ++...........|....   
T Consensus       195 ~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~-~~di~~~s~sK~~~-~~G-G~~~~~-~~~~~~l~~~~~~~~~~~---  266 (384)
T 1bs0_A          195 QQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKV-KPELLVVTFGKGFG-VSG-AAVLCS-STVADYLLQFARHLIYST---  266 (384)
T ss_dssp             HHTTCEEEEECTTTTTTSSGGGCCHH-HHTTC-CCSEEEEESSSTTS-SCC-EEEEEC-HHHHHHHHHHCHHHHSSB---
T ss_pred             HHcCcEEEEECCcccceecCCCCchH-HhcCC-CCcEEEeeccchhh-ccC-cEEEeC-HHHHHHHHHhchhhhcCC---
Confidence            9999999999999765432 0 1111 11121 35899999999997 666 888874 333332111111111000   


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                .........+.++++.+.....++..++..++++++.+
T Consensus       267 ------------------------------------------~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~  304 (384)
T 1bs0_A          267 ------------------------------------------SMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRA  304 (384)
T ss_dssp             ------------------------------------------CCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------CCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                                                      00001122334445543222557788889999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++ |+++. ++..+++.+.++. .....++.+.|.++|+ .+.+...    .+..++|+++ ...++++|+++++++
T Consensus       305 ~L~~~-g~~~~-~~~~~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~~~~~~~~~~~~~Ri~~-~~~~~~~~i~~~~~~  379 (384)
T 1bs0_A          305 GVQDL-PFTLA-DSCSAIQPLIVGD-NSRALQLAEKLRQQGC-WVTAIRPPTVPAGTARLRLTL-TAAHEMQDIDRLLEV  379 (384)
T ss_dssp             HHTTS-SCEEC-SCCSSBCCEEEES-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEECCBC-CTTCCHHHHHHHHHH
T ss_pred             HHHhc-CCccc-CCCCCEEEEEeCC-HHHHHHHHHHHHHCCc-EEEeecCCCCCCCCceEEEEE-cCCCCHHHHHHHHHH
Confidence            99997 78775 3445566666653 3346689999998874 4433322    2347999965 567789999999999


Q ss_pred             HHHH
Q psy3048         344 ISHQ  347 (367)
Q Consensus       344 l~~~  347 (367)
                      |+++
T Consensus       380 l~~~  383 (384)
T 1bs0_A          380 LHGN  383 (384)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9875

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.83  E-value=5e-20  Score=175.68  Aligned_cols=260  Identities=12%  Similarity=0.066  Sum_probs=175.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--C--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CCh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--D--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl  102 (367)
                      .-.|+++..+|.++...++..|++++.++.+  +  ++.+|+++|++++++ +      .+|++++++|++|.+   +++
T Consensus       114 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~------~~v~i~~p~nptG~~~~~~~l  186 (391)
T 4dq6_A          114 NDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-V------KLFILCNPHNPVGRVWTKDEL  186 (391)
T ss_dssp             TCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-E------EEEEEESSBTTTTBCCCHHHH
T ss_pred             CCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-C------CEEEEECCCCCCCcCcCHHHH
Confidence            3467778899999999999999999999886  2  356999999999977 4      478889999999999   789


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC----CCcceeeeccccccc-cCCcceeEEEecchhhhhhccCC
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      ++|+++|++||+++++|++|+.+.+....... +..+    ....+++.+.+|+++ .+.++|+++.+++........  
T Consensus       187 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--  263 (391)
T 4dq6_A          187 KKLGDICLKHNVKIISDEIHSDIILKKHKHIP-MASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDD--  263 (391)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH--
T ss_pred             HHHHHHHHHcCCEEEeeccccccccCCCCccC-HHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHH--
Confidence            99999999999999999999875442110000 0011    011377889999996 445688888765333322110  


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                        .....                                          .......+....+.+++.. ..+.+++..++
T Consensus       264 --~~~~~------------------------------------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~  298 (391)
T 4dq6_A          264 --AFTRI------------------------------------------DIKRNNCFSLVATEASYNN-GESWLESFLEY  298 (391)
T ss_dssp             --HHHHT------------------------------------------TCCCCCHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred             --HHHhh------------------------------------------cCCCCCHHHHHHHHHHHhc-hHHHHHHHHHH
Confidence              00000                                          0000010112233333433 34557888888


Q ss_pred             HHHHHHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-E--CCeeEEEEEecCCCC
Q psy3048         258 HISLAKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-F--QGRPFLRFVVTSPET  332 (367)
Q Consensus       258 ~~~la~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~--~~~~~lRi~~~~~~~  332 (367)
                      ..++++++.+.|++ +||+.+..+.....+++.++.......++.+.|.++ |+ .+.++. +  .+..++|+++.   +
T Consensus       299 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRis~~---~  374 (391)
T 4dq6_A          299 LESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKV-ALNQGNSFGIGGSGYQRINLA---C  374 (391)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCE-ECEEGGGGCTTCTTEEEEECC---S
T ss_pred             HHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCE-EeeCchhhCCCCCCeEEEEEc---C
Confidence            99999999999988 789988755443344466653112367899999988 74 444432 1  23479999764   5


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQS  348 (367)
Q Consensus       333 ~~edid~li~~l~~~~  348 (367)
                      +++|+++++++|++++
T Consensus       375 ~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          375 PRSMLEEALIRIKNAI  390 (391)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            7999999999998875

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.83  E-value=1.5e-19  Score=173.18  Aligned_cols=262  Identities=12%  Similarity=0.033  Sum_probs=173.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChh---hHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLE---ELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~---~I~  106 (367)
                      -.|++...+|.++...++..|++++.++.++++ +|+++|++++++ .++     .++++++++|++|.+.|.+   +|+
T Consensus       116 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~-----~v~~~~~~~nptG~~~~~~~l~~l~  189 (397)
T 2zyj_A          116 SPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRERPR-----FLYLIPSFQNPTGGLTPLPARKRLL  189 (397)
T ss_dssp             CEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHCCCS-----CEEECCBSCTTTCCBCCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhcCCe-----EEEECCCCcCCCCCcCCHHHHHHHH
Confidence            456667789999999999999999999987655 999999999976 332     2336788899999997654   899


Q ss_pred             HHHhhcCcEEEEecccccccccCh---hhhhhhCCCC---CcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLE---YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~---~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      ++|++||+++++|++|+.+.+...   .... + +..   .-.+++.+.||+++.+.++|+++.+. +..+........+
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~-~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~-~~~~~l~~~~~~~  266 (397)
T 2zyj_A          190 QMVMERGLVVVEDDAYRELYFGEARLPSLFE-L-AREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP-EALQKLVQAKQGA  266 (397)
T ss_dssp             HHHHHHTCCEEEECTTTTCBCSSCCCCCHHH-H-HHHHTCCCEEEEEESTTTTCGGGCCEEEECCH-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEeCCcccccCCCCCCCchhh-h-CcccCCCeEEEEecccccccccceeEEEecCH-HHHHHHHHHHHhh
Confidence            999999999999999987654211   1111 0 000   11477889999998335678888753 3222211000000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                                                                  .++   ...+....+..+++....+.+++..++..+
T Consensus       267 --------------------------------------------~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  299 (397)
T 2zyj_A          267 --------------------------------------------DLH---TPMLNQMLVHELLKEGFSERLERVRRVYRE  299 (397)
T ss_dssp             --------------------------------------------HSS---CCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cCC---CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                                                        000   000111222223332111457777788888


Q ss_pred             HHHHHHHHhcC-CC-CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E----CCeeEEEEEecCCCCC
Q psy3048         261 LAKKFADLVEK-DD-RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F----QGRPFLRFVVTSPETN  333 (367)
Q Consensus       261 la~~l~~~L~~-~~-g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~lRi~~~~~~~~  333 (367)
                      +++++.+.|++ +| |+++..+.....++++++. .....++.+.|.++|+ .+.++. +    .+..++|+++.. . +
T Consensus       300 ~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~g~~f~~~~~~~~~iRis~~~-~-~  375 (397)
T 2zyj_A          300 KAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK-GLSAEGLFRRALEENV-AFVPGGPFFANGGGENTLRLSYAT-L-D  375 (397)
T ss_dssp             HHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST-TCCHHHHHHHHHHTTE-EEEESGGGCTTSCCTTEEEEECSS-S-C
T ss_pred             HHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC-CCCHHHHHHHHHHCCC-EEechHHhcCCCCCCCeEEEEcCC-C-C
Confidence            99999999987 57 6887655555667777753 2235689999998984 444432 2    135689997754 3 7


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy3048         334 QCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~  352 (367)
                      ++|+++++++|+++++++.
T Consensus       376 ~~~i~~~~~~l~~~l~~~~  394 (397)
T 2zyj_A          376 REGIAEGVRRLGRALKGLL  394 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.83  E-value=3.6e-19  Score=170.62  Aligned_cols=268  Identities=15%  Similarity=0.092  Sum_probs=172.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.+|.+...+++..|++++.+++++++.+|+++|++++++..   ..+.+|++++   ++|...|+++|.++|
T Consensus        72 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~  145 (394)
T 1o69_A           72 DDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEIC  145 (394)
T ss_dssp             TCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHH
T ss_pred             CCEEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHH
Confidence            3467788899999999999999999999998789999999999997621   0123666664   799999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ++||+++++|++|+.+..+.+..   ...+..+|+++++.||.+. |.++|+++.++++...........+. ....   
T Consensus       146 ~~~~~~li~Dea~~~g~~~~~~~---~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~-~~~~---  217 (394)
T 1o69_A          146 KENDIVLIEDAAEALGSFYKNKA---LGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQAR-ENCL---  217 (394)
T ss_dssp             HHTTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCC-CSSS---
T ss_pred             HHcCCEEEEECcCcccceeCCcc---cccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhcc-ccCc---
Confidence            99999999999998443332210   0112346999999999776 67899998865444332211111100 0000   


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                          .+                 .             ....+.++....+.+++.....+.+++..++..++++++.+.|
T Consensus       218 ----~~-----------------~-------------~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L  263 (394)
T 1o69_A          218 ----HY-----------------E-------------HLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFL  263 (394)
T ss_dssp             ----SC-----------------C-------------CSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ----cc-----------------c-------------ccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                00                 0             0000000111122222221123446778889999999999999


Q ss_pred             cCCCCeEEeCCC-----CceeEEEEEcCC--------------------chHHHHHHHHHhccCcEEEEEeE--------
Q psy3048         270 EKDDRFELVCPP-----SMGLVCFRLKGD--------------------NDLTNQLYERLMSHKQIYIIKAS--------  316 (367)
Q Consensus       270 ~~~~g~~~~~~~-----~~~~v~f~~~~~--------------------~~~~~~l~~~L~~~g~~~~~~~~--------  316 (367)
                      +++  +++..++     .+.++.+.++..                    .....++.+.|.++|+. +.+..        
T Consensus       264 ~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~-v~~~~~~~~~~p~  340 (394)
T 1o69_A          264 GEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIE-TRPLWKAMHTQEV  340 (394)
T ss_dssp             TTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCC-CBCCCCCGGGCGG
T ss_pred             ccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCc-ccccCCccccchh
Confidence            887  6665432     223577777631                    12456899999888853 32220        


Q ss_pred             ECC----e---------eEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         317 FQG----R---------PFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       317 ~~~----~---------~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +..    .         ..+|+ ++++++|++|+++++++|+++.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          341 FKGAKAYLNGNSELFFQKGICL-PSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             GTTCEEEECSHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             hhccCCCCChHHHHHhcCeEEc-cCCCCCCHHHHHHHHHHHHHHHh
Confidence            000    0         34555 34789999999999999998754

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.83  E-value=2.5e-19  Score=168.73  Aligned_cols=250  Identities=11%  Similarity=-0.004  Sum_probs=174.2

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHH--HHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK--EDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~--~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      -.|+++..+|.++...++..|++++.++.++++.+|+++|+++++  +.+      .+|++++++|++|.+.|++++.++
T Consensus        93 d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~------~~v~l~~p~nptG~~~~~~~l~~l  166 (354)
T 3ly1_A           93 AQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGP------SIVYLVNPNNPTGTITPADVIEPW  166 (354)
T ss_dssp             CEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSC------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCC------CEEEEeCCCCCcCCCcCHHHHHHH
Confidence            456678899999999999999999999998789999999999997  443      578889999999999998888888


Q ss_pred             Hhh--cCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         109 CQE--YNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       109 ~~~--~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++.  ||+++++|++|+.+.+...  ............++++.+.+|+++ .+.++|+++.. +............    
T Consensus       167 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~~~~~----  241 (354)
T 3ly1_A          167 IASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAH-PTVIALMGRYVAG----  241 (354)
T ss_dssp             HHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECC-HHHHHHHGGGTTC----
T ss_pred             HHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecC-HHHHHHHHHhcCC----
Confidence            887  9999999999986544221  000001111023688889999997 44667888773 3333221110000    


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la  262 (367)
                                 +                               +      ...+...++...+ ..+.+++..++..+++
T Consensus       242 -----------~-------------------------------~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  273 (354)
T 3ly1_A          242 -----------E-------------------------------K------INFSGVDAALASMNDSAFITYSKKSNDVSR  273 (354)
T ss_dssp             -----------S-------------------------------C------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----------C-------------------------------C------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence                       0                               0      0012222222222 2356788888899999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +++.+.|+++ |+.+. ++..+.+++.++.   ...++.+.|.++|+. +. +.+ ....++|+++.    +++|+++++
T Consensus       274 ~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~---~~~~~~~~l~~~gi~-v~-g~~~~~~~~iRis~~----~~~~i~~~~  342 (354)
T 3ly1_A          274 QILLKALEDL-KLPYL-PSEGNFVFHQLVV---PLKDYQTHMADAGVL-IG-RAFPPADNWCRISLG----TPQEMQWVA  342 (354)
T ss_dssp             HHHHHHHHHH-TCCBC-CCCSSEEEEECSS---CHHHHHHHHHHTTEE-CC-CCCTTCTTEEEEECC----CHHHHHHHH
T ss_pred             HHHHHHHHHC-CCeEC-CCCceEEEEECCC---CHHHHHHHHHHCCEE-Ee-ecCCCCCCEEEEEcC----CHHHHHHHH
Confidence            9999999887 77665 4455567777754   356888889888843 43 322 24679999753    699999999


Q ss_pred             HHHHHHHHH
Q psy3048         342 NEISHQSSE  350 (367)
Q Consensus       342 ~~l~~~~~~  350 (367)
                      ++|++++++
T Consensus       343 ~~l~~~l~~  351 (354)
T 3ly1_A          343 DTMREFRKK  351 (354)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998764

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.83  E-value=1.6e-20  Score=183.28  Aligned_cols=252  Identities=13%  Similarity=0.046  Sum_probs=167.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec--CCC----CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDN----GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~----~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      +-.|++++.+|.+...++...|++++++++  +++    +.+|+++|   +.+.+      .+|++++ +|++|.+.|++
T Consensus        96 gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~------~~v~~~~-~n~~G~~~~l~  165 (446)
T 2x3l_A           96 KGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NNDGH------KLVVLTY-PNYYGETFNVE  165 (446)
T ss_dssp             SSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSSEEEEEC----------C------CEEEEES-SCTTSCCCCHH
T ss_pred             CCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCCCc------eEEEEEC-CCCCeEecCHH
Confidence            456778899999999999999999999998  654    67898888   33333      4777777 56699999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhh-hhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT-NTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~-~~~~~~~~yl~  182 (367)
                      +|.++|++||+++++|+||++...+.+. ....... .+|+++.++||++.++.|+|++++++.. +. ..+....... 
T Consensus       166 ~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~-g~Di~~~S~~K~l~~~~g~g~l~~~~~~-i~~~~~~~~~~~~-  241 (446)
T 2x3l_A          166 EVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY-QADYVVQSFHKTLPALTMGSVLYIHKNA-PYRENIIEYLSYF-  241 (446)
T ss_dssp             HHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG-TCSEEEECHHHHSSSCTTCEEEEEETTC-TTHHHHHHHHHHH-
T ss_pred             HHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc-CCCEEEECCccccccccccEEEEEcCCc-CCHHHHHHHHHHH-
Confidence            9999999999999999999873222221 1101111 2599999999999999999999996542 11 0000000000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      .      ..++++                                      ....++.++++.+...|.+++.++..+++
T Consensus       242 ~------~~s~~~--------------------------------------~~~aal~~a~~~l~~~g~~~~~~~~~~l~  277 (446)
T 2x3l_A          242 Q------TSSPSY--------------------------------------LIMASLESAAQFYKTYDSTLFFAKRAQLI  277 (446)
T ss_dssp             S------CSSCCH--------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             c------CCCchH--------------------------------------HHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            0      001111                                      11234444555555556566788888999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ++++++     |++++.+.....+++.+++  ....++.+.|.++|+ .+.   ..+..++|+++ ..+++++|+ ++++
T Consensus       278 ~~l~~~-----g~~~~~~~~~~~l~i~~~~--~~~~~l~~~L~~~GI-~v~---~~g~~~iRi~~-~~~~t~e~i-~l~~  344 (446)
T 2x3l_A          278 ECLENK-----GFEMLQVDDPLKLLIKYEG--FTGHDIQNWFMNAHI-YLE---LADDYQALAIL-PLWHHDDTY-LFDS  344 (446)
T ss_dssp             HHHHHH-----TCEEEECSSTTEEEEECTT--SCHHHHHHHHHHTTE-EES---EECSSCEEEEC-CCCCTTCCC-CHHH
T ss_pred             HHHHHc-----CCEECcCCCCeEEEEEeCC--cCHHHHHHHHHHCCC-EEE---ecCCCEEEEEe-ecCCCHHHH-HHHH
Confidence            998887     6777754333356676653  235678888988874 332   12346899976 567789999 9999


Q ss_pred             HHHHHHHHhh
Q psy3048         343 EISHQSSEMN  352 (367)
Q Consensus       343 ~l~~~~~~~~  352 (367)
                      +|+++.+++.
T Consensus       345 aL~~~~~~~~  354 (446)
T 2x3l_A          345 LLRKIEDMIL  354 (446)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHHHhhc
Confidence            9999977653

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.83  E-value=6.2e-19  Score=171.08  Aligned_cols=270  Identities=11%  Similarity=0.051  Sum_probs=178.9

Q ss_pred             ceEEEecCCcchhHHHHHH-hCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAI-IGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~-~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      .-.|++++.+|.++..++. ..|++++.+++++  ++.+|+++|++++++..+++..+.+|++++++|++|.+.|   ++
T Consensus       135 gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~  214 (435)
T 3piu_A          135 GEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELY  214 (435)
T ss_dssp             TCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHH
Confidence            3467778889999998888 6899999999864  4678999999999886544445678899999999999854   58


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhh---hhhhCC--C------CCcceeeeccccccc-cCCcceeEEEecchhhh
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEY---AHLKRG--L------EYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLT  171 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~---~~~~~~--~------~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~  171 (367)
                      +|+++|++||+++++|++|+.+.+.....   ......  +      ....+++.+.+|+++ .+..+|+++..++....
T Consensus       215 ~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~  294 (435)
T 3piu_A          215 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVA  294 (435)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHH
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHH
Confidence            88899999999999999998754432110   000010  0      111377889999997 44568888875543322


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh--HH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG--LK  249 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~  249 (367)
                      . +.....+..                                                ........+.+.+....  .+
T Consensus       295 ~-~~~~~~~~~------------------------------------------------~~~~~~~~~~~~l~~~~~~~~  325 (435)
T 3piu_A          295 A-ATKMSSFGL------------------------------------------------VSSQTQHLLSAMLSDKKLTKN  325 (435)
T ss_dssp             H-HHHHGGGSC------------------------------------------------CCHHHHHHHHHHHHCHHHHHH
T ss_pred             H-HHHHhhcCC------------------------------------------------CCHHHHHHHHHHhcChHHHHH
Confidence            1 100000000                                                00011112222232211  33


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-----hHHHHHHHHHhcc-CcEEEEEeEE---CCe
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN-----DLTNQLYERLMSH-KQIYIIKASF---QGR  320 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----~~~~~l~~~L~~~-g~~~~~~~~~---~~~  320 (367)
                      .+++..++..++.+++.+.|+++ |+++..+.....+.+.++...     ....++.++|.++ | +.+.++..   .++
T Consensus       326 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~  403 (435)
T 3piu_A          326 YIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVH-LNISPGSSCHCTEP  403 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSC-EECEEGGGGTCSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCC-EEEeCCcccCCCCC
Confidence            45677778889999999999987 888765544456677665310     0345788888877 6 44544322   346


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .++|+++. .. +++|+++++++|+++++++.
T Consensus       404 ~~iRi~~~-~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          404 GWFRVCFA-NL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             TEEEEECS-SS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEee-CC-CHHHHHHHHHHHHHHHHHHh
Confidence            79999763 33 79999999999999988754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.83  E-value=2.7e-19  Score=173.22  Aligned_cols=266  Identities=13%  Similarity=0.059  Sum_probs=174.6

Q ss_pred             eEEEecCCcchhHHHHHH-hCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          31 LVAYASDQSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~-~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      -.|++++.+|.++...+. ..|++++.++.+  +++.+|+++|++++++...++..+.+|++++++|++|.+.|   +++
T Consensus       133 d~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~  212 (428)
T 1iay_A          133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKS  212 (428)
T ss_dssp             CEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHH
Confidence            467777888998877554 689999999886  35689999999999865333333567888999999999988   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh---hhhhhhCC-----CCCcc--eeeeccccccccC-CcceeEEEecchhhhhh
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRG-----LEYVD--SFAFNAHKWLLTN-HDCSAMWVKNANHLTNT  173 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~~~-----~~~~D--~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~  173 (367)
                      |+++|++||+++++|++|+.+.+...   ........     . ..|  +++.+.||+++.| ..+|+++..++......
T Consensus       213 l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~  291 (428)
T 1iay_A          213 VLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC-NKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCA  291 (428)
T ss_dssp             HHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS-CTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC-CCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHH
Confidence            99999999999999999987544211   11111111     0 136  7889999999643 44688887544433221


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh--hHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY--GLKGL  251 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~  251 (367)
                      ... ..+              +                               +   ...+....+..++...  ..+.+
T Consensus       292 ~~~-~~~--------------~-------------------------------~---~~~~~~~a~~~~l~~~~~~~~~~  322 (428)
T 1iay_A          292 RKM-SSF--------------G-------------------------------L---VSTQTQYFLAAMLSDEKFVDNFL  322 (428)
T ss_dssp             HHH-HTT--------------S-------------------------------C---CCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHH-Hhc--------------c-------------------------------c---CCHHHHHHHHHHhcChHHHHHHH
Confidence            100 000              0                               0   0001111222222211  12356


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-----hHHHHHHHHHhcc-CcEEEEEeE-EC--CeeE
Q psy3048         252 QAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN-----DLTNQLYERLMSH-KQIYIIKAS-FQ--GRPF  322 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----~~~~~l~~~L~~~-g~~~~~~~~-~~--~~~~  322 (367)
                      ++..++..++++++.+.|+++ |+++..+...+.++++++...     ....++.+.|.++ |+ .+.+.. +.  +..+
T Consensus       323 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi-~v~~~~~~~~~~~~~  400 (428)
T 1iay_A          323 RESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKL-NVSPGSSFECQEPGW  400 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCE-ECEEGGGGTCSSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCE-EEeCchhhCCCCCCE
Confidence            777888889999999999987 777654434556677775311     2345788888877 74 444432 11  2468


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +|+++.  .++++|+++++++|++++++
T Consensus       401 iRis~~--~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          401 FRVCFA--NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             EEEECS--SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEe--cCCHHHHHHHHHHHHHHHhc
Confidence            999764  46899999999999998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.83  E-value=1.2e-19  Score=175.85  Aligned_cols=266  Identities=12%  Similarity=0.012  Sum_probs=181.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|..+...++..|++++.++.+  .++.+|+++|++++++.+      .+|++++++|++|.+.|   +++
T Consensus       142 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~nptG~~~~~~~l~~  215 (427)
T 3dyd_A          142 GQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKT------ACLIVNNPSNPCGSVFSKRHLQK  215 (427)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC------CEEEEECCCCCCCCCCCHHHHHH
Confidence            3467777889999999999999999999885  467899999999986644      47888999999999999   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccccC-CcceeEEEecch-----hhhhhccCC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNAN-----HLTNTFFTD  177 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~-----~~~~~~~~~  177 (367)
                      |+++|++||+++++|++|+.+.+....... ...+.....+++.+.+|.++.| ..+|+++.++..     .+...+.  
T Consensus       216 i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~--  293 (427)
T 3dyd_A          216 ILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLV--  293 (427)
T ss_dssp             HHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHH--
T ss_pred             HHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHH--
Confidence            999999999999999999876543211100 0011111125566899986543 568998887531     1111000  


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                       .+...                                            ......+.+..+..++.....+.+++..++
T Consensus       294 -~~~~~--------------------------------------------~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~  328 (427)
T 3dyd_A          294 -KLSQR--------------------------------------------ILGPCTIVQGALKSILCRTPGEFYHNTLSF  328 (427)
T ss_dssp             -HHHHH--------------------------------------------HCCSCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             -HHHhc--------------------------------------------cCCCCHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence             00000                                            000011222344444554456778888899


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC----chHHHHHHHHHh-ccCcEEEEEe-EECCeeEEEEEecCCC
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLM-SHKQIYIIKA-SFQGRPFLRFVVTSPE  331 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~----~~~~~~l~~~L~-~~g~~~~~~~-~~~~~~~lRi~~~~~~  331 (367)
                      ..++++++.+.|+++||+.+..+.....+.+.++..    .....++.++|. ++|+ ++.++ .+..+.++|+++.   
T Consensus       329 ~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV-~v~~g~~~~~~~~iRis~~---  404 (427)
T 3dyd_A          329 LKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSV-HCLPATCFEYPNFIRVVIT---  404 (427)
T ss_dssp             HHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCE-ECEEGGGGTCTTEEEEESC---
T ss_pred             HHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCE-EEECCcccCCCCeEEEEEC---
Confidence            999999999999999999887665555666666420    123467888886 5664 44443 3334579999753   


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh
Q psy3048         332 TNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~  352 (367)
                      ++++++++++++|+++++++.
T Consensus       405 ~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          405 VPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999988764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.83  E-value=1.2e-19  Score=174.84  Aligned_cols=269  Identities=11%  Similarity=0.005  Sum_probs=180.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.++  ++.+|+++|++++++.+      .++++++++|++|.+.|   +++
T Consensus       128 gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~i~~p~nptG~~~~~~~l~~  201 (416)
T 1bw0_A          128 GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT------KLLIVTNPSNPCGSNFSRKHVED  201 (416)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCC------eEEEEeCCCCCCCcccCHHHHHH
Confidence            34567777899999999999999999998853  47799999999987544      47888889999999988   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh----hhhhhhCCCCC--cceeeeccccccccC-CcceeEEEecc-hhhhhhccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP----EYAHLKRGLEY--VDSFAFNAHKWLLTN-HDCSAMWVKNA-NHLTNTFFT  176 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~----~~~~~~~~~~~--~D~~~~~~hK~l~~p-~g~g~l~~~~~-~~~~~~~~~  176 (367)
                      |+++|++||+++++|++|+.+.+...    ... .+..+..  .++++.+.+|+++.| ..+|+++.+++ ..+......
T Consensus       202 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~  280 (416)
T 1bw0_A          202 IVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT-SVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEG  280 (416)
T ss_dssp             HHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCC-CTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHH
T ss_pred             HHHHHHHcCCEEEEEccccccccCCCCCCCCcc-CHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHH
Confidence            99999999999999999987543221    110 1111211  146677899998654 45889888664 222211000


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                      ...+. ..                                        .++   ...+....+..+++....+++++..+
T Consensus       281 ~~~~~-~~----------------------------------------~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~  316 (416)
T 1bw0_A          281 LKRVG-ML----------------------------------------VCG---PCTVVQAALGEALLNTPQEHLDQIVA  316 (416)
T ss_dssp             HHHHH-HH----------------------------------------HTC---SCHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHh-cc----------------------------------------ccC---CCcHHHHHHHHHHhcccHHHHHHHHH
Confidence            00000 00                                        000   01112233344454434677888999


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC----chHHHHHHHHHh-ccCcEEEEEe-EECCeeEEEEEecCC
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLM-SHKQIYIIKA-SFQGRPFLRFVVTSP  330 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~----~~~~~~l~~~L~-~~g~~~~~~~-~~~~~~~lRi~~~~~  330 (367)
                      +..++++++.+.|+++||+.+..+.....+.++++..    .....++.+.|. ++|+ .+.++ .+....++|+++.  
T Consensus       317 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~f~~~~~iRis~~--  393 (416)
T 1bw0_A          317 KIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENV-QVLPGTIFHAPGFTRLTTT--  393 (416)
T ss_dssp             HHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCE-ECEEGGGGTCTTEEEEECC--
T ss_pred             HHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCE-EEecccccCCCCeEEEEec--
Confidence            9999999999999998899876554455566666421    123567888875 6774 44433 2223468999763  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~~  353 (367)
                       +++++++.+++.|++++++..+
T Consensus       394 -~~~e~l~~~l~~l~~~l~~~~~  415 (416)
T 1bw0_A          394 -RPVEVYREAVERIKAFCQRHAA  415 (416)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHBC
T ss_pred             -CCHHHHHHHHHHHHHHHHHhhc
Confidence             5799999999999999887543

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.83  E-value=1e-19  Score=176.35  Aligned_cols=275  Identities=11%  Similarity=0.035  Sum_probs=175.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHH-HHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAV-KEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l-~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|+++..+|.++..+++..|++++.++.+ +++.+|+++|++++ ++.+      .+|++++++|++|.+.|   +++|+
T Consensus       135 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~------~~v~l~~p~nptG~~~~~~~l~~i~  208 (437)
T 3g0t_A          135 GTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQF------CSIIYSNPNNPTWQCMTDEELRIIG  208 (437)
T ss_dssp             CEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCC------CEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCc------eEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            57777899999999999999999999985 45679999999999 4433      47778899999999976   77789


Q ss_pred             HHHhhcCcEEEEecccccccccChhhh-------hhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhh-hhccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYA-------HLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLT-NTFFTD  177 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~-~~~~~~  177 (367)
                      ++|++||+++++|++|+.+.+......       ..+.+....++++.+.+|+++ .+.++|+++.++ .... ......
T Consensus       209 ~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~  287 (437)
T 3g0t_A          209 ELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISG-KLYEREYPDLE  287 (437)
T ss_dssp             HHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECH-HHHHCBCGGGH
T ss_pred             HHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECH-HHhhhhhhccc
Confidence            999999999999999986443210000       011111234688899999997 446688888753 2222 100000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH---HHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG---LQAY  254 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~~  254 (367)
                      ..+.....        .+   .++...                   ..........+....+..++.. ...+   +++.
T Consensus       288 ~~~~~~~~--------~~---~~~~~~-------------------~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~  336 (437)
T 3g0t_A          288 ESFGRLRF--------GE---ALSSSA-------------------LYALSSGATHSAQWGMAAMLKA-CNDGEYNFRDS  336 (437)
T ss_dssp             HHHSCSBH--------HH---HHHTTH-------------------HHHHHSSSCHHHHHHHHHHHHH-HHTTSCCHHHH
T ss_pred             ccccccch--------hH---HHHHHH-------------------HhhhcCCCCHHHHHHHHHHHhC-cHhHHHHHHHH
Confidence            00000000        00   000000                   0000000111112222233332 1122   7888


Q ss_pred             HHHHHHHHHHHHHHhcCCCCeEEe------CC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECC---eeEEE
Q psy3048         255 LRKHISLAKKFADLVEKDDRFELV------CP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQG---RPFLR  324 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~g~~~~------~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~lR  324 (367)
                      .++..++++++.+.|+++ |+++.      .+ .....+++.+++  ....++.++|.++|+ .+.+....+   ..++|
T Consensus       337 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi-~v~~~~~~~~~~~~~iR  412 (437)
T 3g0t_A          337 VIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKG--MDSSKLIEKFVRYGM-CAITLKTTGSKRNEAMR  412 (437)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETT--CCHHHHHHHHHHTTE-ECEESTTTTCCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCC--CCHHHHHHHHHHcCe-EEeeccccCCCCCCEEE
Confidence            899999999999999998 89887      34 455667777763  236789999998884 444432211   25799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++++  +++++|+++++++|++++++
T Consensus       413 is~~--~~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          413 ICTS--LLPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             EECS--SSCGGGHHHHHHHHHHHHHH
T ss_pred             EEEe--cCCHHHHHHHHHHHHHHHhc
Confidence            9764  44899999999999998764

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.83  E-value=6.1e-20  Score=177.52  Aligned_cols=263  Identities=13%  Similarity=0.072  Sum_probs=177.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCccccc---CCh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAF---DNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i---~dl  102 (367)
                      .-.|++...+|.++..++...|.+++.++.+   .++.+|+++|++++++ .+      .+|++++++|++|.+   +++
T Consensus       143 gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~------~~vil~~p~nptG~~~~~~~l  216 (421)
T 3l8a_A          143 GDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNV------KIYLLCSPHNPGGRVWDNDDL  216 (421)
T ss_dssp             EEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTE------EEEEEESSBTTTTBCCCHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCC------eEEEECCCCCCCCCcCCHHHH
Confidence            3467778889999999999999999999874   2357899999999973 44      578889999999998   789


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChh---hhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      ++|+++|++||+++++|++|+.+.+....   +.....+....++.+.+.+|+++ .+.++|+++.++++.......   
T Consensus       217 ~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~---  293 (421)
T 3l8a_A          217 IKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQY---  293 (421)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH---
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHH---
Confidence            99999999999999999999875442211   10000011123577888999997 446678888864443322100   


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                       ....                                          +....++.+...++.+++.. +.+.+++..++.
T Consensus       294 -~~~~------------------------------------------~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~  329 (421)
T 3l8a_A          294 -RQLA------------------------------------------NNQHEVPTVGMIATQAAFQY-GKPWLEELKTVI  329 (421)
T ss_dssp             -HHHH------------------------------------------TTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             -HHHh------------------------------------------cccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence             0000                                          00000111222333444443 456678888899


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCCCCCH
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~~~~~  334 (367)
                      .++.+++.+.|+++|++.+..+.....+++.++.......++.++|.++ | +.+.++..   .+..++|+++.   +++
T Consensus       330 ~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~g-i~v~~g~~f~~~~~~~iRi~~~---~~~  405 (421)
T 3l8a_A          330 EGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAK-VVLNDGAHFGKEGKYFARLNVA---TPK  405 (421)
T ss_dssp             HHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTC-EECEEGGGGCGGGTTEEEEECC---SCH
T ss_pred             HHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCC-EEEECchhhCCCCCCEEEEEec---CCH
Confidence            9999999999988788988765544444466643112345788888755 6 44544322   23579999764   479


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQSS  349 (367)
Q Consensus       335 edid~li~~l~~~~~  349 (367)
                      ++++++++.|+++++
T Consensus       406 ~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          406 NTVQEALSRIISVFG  420 (421)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998754

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.83  E-value=2.3e-19  Score=173.29  Aligned_cols=281  Identities=10%  Similarity=0.021  Sum_probs=176.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...++...|++++.+++++ ++.+|+++|++++++.+      .+|+++   +++|.+.|+++|.++
T Consensus        82 gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~~~---~~~G~~~~~~~i~~~  152 (418)
T 2c81_A           82 GDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKT------KAIIPV---HLFGSMANMDEINEI  152 (418)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTE------EEECCB---CCTTCCCCHHHHHHH
T ss_pred             cCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCC------eEEEEe---CCcCCcccHHHHHHH
Confidence            34677888999999999999999999999975 78999999999987544      355544   478999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |++||+++++|++|+.+......  . ......++++++++||+++.+ .+|+++.+++.......... .+-.......
T Consensus       153 ~~~~~~~li~D~a~~~~~~~~~~--~-~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~-~~~~~~~~~~  227 (418)
T 2c81_A          153 AQEHNLFVIEDCAQSHGSVWNNQ--R-AGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLR-ADSRVYCDDS  227 (418)
T ss_dssp             HHHTTCEEEEECTTCTTCEETTE--E-TTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHH-BTTEEECSCG
T ss_pred             HHHCCCEEEEECcccccCccCCE--e-cccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHH-HhCccccccc
Confidence            99999999999999877522111  0 111223467777779999873 66666664444332221000 0000000000


Q ss_pred             CCCCCCchhhhhhcccCCCcchhcc-CCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLN-CSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                      ......|                .. .+. +       .......+..  .+.+++.....++++++.++..++++++.+
T Consensus       228 ~~~~~~~----------------~~~~~~-~-------~~~g~~~~~~--~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~  281 (418)
T 2c81_A          228 SELMHGD----------------MQLVKK-G-------DIQGSNYCLS--EFQSAILLDQLQELDDKNAIREKNAMFLND  281 (418)
T ss_dssp             GGCCTTC----------------BSEEEC-C-------SSCCCBCCCC--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccch----------------hhcccc-c-------cccCcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000001                00 000 0       0000011111  222233333445678888899999999999


Q ss_pred             HhcCCCCeEEeCCCCc------eeEEEEEcC---CchHHHHHHHHHhcc-CcEE--EEEeEEC-----------------
Q psy3048         268 LVEKDDRFELVCPPSM------GLVCFRLKG---DNDLTNQLYERLMSH-KQIY--IIKASFQ-----------------  318 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~------~~v~f~~~~---~~~~~~~l~~~L~~~-g~~~--~~~~~~~-----------------  318 (367)
                      .|++++|+++..++..      .++.+.++.   ......++.+.|.++ |+..  +.+....                 
T Consensus       282 ~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~  361 (418)
T 2c81_A          282 ALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLK  361 (418)
T ss_dssp             HHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCH
T ss_pred             HhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccc
Confidence            9999999998754321      245567652   012356888999888 8540  3322100                 


Q ss_pred             -----------C---------eeEEEEEecCCCC-CHHHHHHHHHHHHHHHHHh
Q psy3048         319 -----------G---------RPFLRFVVTSPET-NQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       319 -----------~---------~~~lRi~~~~~~~-~~edid~li~~l~~~~~~~  351 (367)
                                 +         ...+|+++ ++++ |++||++++++|+++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~-~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          362 SVRKTEAYWRGLHYPVSERASGQSIVIHH-AILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             HHHCCHHHHHTCCCHHHHHHHHHEEEEEG-GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccCCChHHHHHHhCEEEecC-CccCCCHHHHHHHHHHHHHHHHhh
Confidence                       1         25899964 6788 9999999999999998764

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.83  E-value=5.3e-20  Score=177.18  Aligned_cols=260  Identities=9%  Similarity=-0.017  Sum_probs=176.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.++  ++.+ +++|++++++.+      .+|++++++|++|.+.   ++++
T Consensus       126 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~  198 (409)
T 2gb3_A          126 GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERT------KGIVLSNPCNPTGVVYGKDEMRY  198 (409)
T ss_dssp             TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCC------eEEEECCCCCCCCCCcCHHHHHH
Confidence            34677788899999999999999999999864  4455 888988886543      5778889999999984   5899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      |.++|++||+++++|++|+.+.+....... +.++...|+++.+.||+++.| ..+|+++.++++...........+   
T Consensus       199 i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~---  274 (409)
T 2gb3_A          199 LVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGR---  274 (409)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhcc---
Confidence            999999999999999999876542211111 223334589999999999633 348888876523332211000000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                 .  ....+....+.++++. +.+++++..++..++++
T Consensus       275 -------------------------------------------~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~  308 (409)
T 2gb3_A          275 -------------------------------------------L--APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVE  308 (409)
T ss_dssp             -------------------------------------------C--CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------C--CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence                                                       0  0000111223333322 45678888888999999


Q ss_pred             HHHHHhcCCCCeEE-eCCCCceeEEEEEcCCchHHHHHHHHHhcc------CcEEEEEeE-E-----CCeeEEEEEecCC
Q psy3048         264 KFADLVEKDDRFEL-VCPPSMGLVCFRLKGDNDLTNQLYERLMSH------KQIYIIKAS-F-----QGRPFLRFVVTSP  330 (367)
Q Consensus       264 ~l~~~L~~~~g~~~-~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~------g~~~~~~~~-~-----~~~~~lRi~~~~~  330 (367)
                      ++.+.|+++ |+++ ..+.....+.+++++  ....++.+.|.++      |+ .+.+.. +     .+..++|+++.  
T Consensus       309 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~gi-~v~~g~~f~~~~~~~~~~iRis~~--  382 (409)
T 2gb3_A          309 TVLKKLEEH-GLKRFTKPSGAFYITAELPV--EDAEEFARWMLTDFNMDGETT-MVAPLRGFYLTPGLGKKEIRIACV--  382 (409)
T ss_dssp             HHHHHHHHT-TCCCBCCCSBSSEEEEECSS--SCHHHHHHHHHHSCCBTTEEE-ECEEGGGGCSSTTTTSSEEEEECC--
T ss_pred             HHHHHHHHc-CceeeeCCCeeEEEEEEeCC--CCHHHHHHHHHhccccccCcE-EEeCchHhCCCCCCCCCEEEEEeC--
Confidence            999999987 8877 443333344446642  2356888888877      74 444432 1     13579999754  


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~~  353 (367)
                       ++++|+++++++|+++++++..
T Consensus       383 -~~~e~i~~~~~~l~~~l~~~~~  404 (409)
T 2gb3_A          383 -LEKDLLSRAIDVLMEGLKMFCS  404 (409)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHHHHHHhhh
Confidence             6899999999999999887654

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.83  E-value=8.8e-20  Score=175.20  Aligned_cols=267  Identities=16%  Similarity=0.096  Sum_probs=173.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEE-EEecCCCcccccCChh---hHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL-VATLGTTGTCAFDNLE---ELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~v-v~~~~~t~~G~i~dl~---~I~  106 (367)
                      -.|++++.+|.++...++..|++++.++.++++ +|+++|+++++.....+..+.+| ++.+++|++|.+.|++   +|+
T Consensus       123 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~  201 (407)
T 2zc0_A          123 DVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALL  201 (407)
T ss_dssp             CEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            456677889999999999999999999987655 99999999997321111123454 5778899999998887   999


Q ss_pred             HHHhhcCcEEEEecccccccccChh---hhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~---~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++||+++++|++|+.+.+....   ... + +....++++.+.+|+++.+..+|+++.+ ++...........+   
T Consensus       202 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~---  275 (407)
T 2zc0_A          202 EIASKYDLLIIEDTAYNFMRYEGGDIVPLKA-L-DNEGRVIVAGTLSKVLGTGFRIGWIIAE-GEILKKVLMQKQPI---  275 (407)
T ss_dssp             HHHHHHTCEEEEECTTTTSBSSCSSCCCGGG-G-CSSCCEEEEEESTTTTCTTSCCEEEECC-HHHHHHHHHHHTTT---
T ss_pred             HHHHHcCCEEEEECCCcccccCCCCCCChhh-c-CCCCCEEEEcccccccCCCcceEEEecC-HHHHHHHHHHHHhh---
Confidence            9999999999999999876542211   111 1 1111256777889999833358888875 33332211000000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-H-HHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-L-KGLQAYLRKHISL  261 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~g~~~~~~~~~~l  261 (367)
                                .+                               .   +..+....+..+++... . +.+++..++..++
T Consensus       276 ----------~~-------------------------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  311 (407)
T 2zc0_A          276 ----------DF-------------------------------C---APAISQYIALEYLKRGYFEKYHLEGALLGYKEK  311 (407)
T ss_dssp             ----------TS-------------------------------S---SCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHH
T ss_pred             ----------cC-------------------------------C---CCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence                      00                               0   00011122233333221 2 4566777788889


Q ss_pred             HHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeE-E----CCeeEEEEEecCCCCCH
Q psy3048         262 AKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKAS-F----QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       262 a~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~-~----~~~~~lRi~~~~~~~~~  334 (367)
                      ++++.+.|++ .+++++..+.....+.++++. .....++.+.|.++ |+ .+.++. +    .+..++|+++...  ++
T Consensus       312 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi-~v~~g~~~~~~~~~~~~iRis~~~~--~~  387 (407)
T 2zc0_A          312 RDIMLKALENHLPNAEFTKPIAGMFVMFFLPE-GADGISFANELMEREGV-VVVPGKPFYTDESGKNAIRLNFSRP--SK  387 (407)
T ss_dssp             HHHHHHHHHHHCTTSCBCCCSBSSEEEEECST-TCCHHHHHHHHHHHTCE-ECBCSGGGCSSSCCTTEEEEECSSS--CT
T ss_pred             HHHHHHHHHHhCCCCEEecCCCcEEEEEEcCC-CCCHHHHHHHHHHhCCe-EEECchhccCCCCCCCeEEEEeCCC--CH
Confidence            9999999977 577776555445567777753 22356888999888 74 443321 1    1346899976433  79


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3048         335 CDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       335 edid~li~~l~~~~~~~~  352 (367)
                      +|+++++++|+++++++.
T Consensus       388 ~~i~~~~~~l~~~l~~~~  405 (407)
T 2zc0_A          388 EEIPIGIKKLAKLYKEKF  405 (407)
T ss_dssp             THHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999988763

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.82  E-value=1e-19  Score=173.74  Aligned_cols=262  Identities=11%  Similarity=0.026  Sum_probs=174.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|++|.+.   ++++
T Consensus       111 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~~~~l~~  184 (389)
T 1gd9_A          111 GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT------RALIINSPCNPTGAVLTKKDLEE  184 (389)
T ss_dssp             TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCc------eEEEEECCCCCCCcCCCHHHHHH
Confidence            44677788899999999999999999999864  57899999999986543      4777889999999986   5999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhh-h-hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEY-A-HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+..... . ..+.+....|+++.+.||+++.| ..+|+++.++ ........    ..
T Consensus       185 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~----~~  259 (389)
T 1gd9_A          185 IADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS-WIIERMVK----FQ  259 (389)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHH----HH
T ss_pred             HHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH-HHHHHHHH----HH
Confidence            9999999999999999998765532100 0 01112234589999999998633 3478888753 32222110    00


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH--HHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK--GLQAYLRKHI  259 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  259 (367)
                      ...         .+                               +   ...+....+..+++. +..  +++++.++..
T Consensus       260 ~~~---------~~-------------------------------~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~  295 (389)
T 1gd9_A          260 MYN---------AT-------------------------------C---PVTFIQYAAAKALKD-ERSWKAVEEMRKEYD  295 (389)
T ss_dssp             TTT---------TC-------------------------------S---CCHHHHHHHHHHHTC-HHHHHHHHHHHHHHH
T ss_pred             hhh---------cc-------------------------------C---CCHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence            000         00                               0   000111222333332 233  6788888899


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeEE-C--CeeEEEEEecCCCCCHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKASF-Q--GRPFLRFVVTSPETNQC  335 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~-~--~~~~lRi~~~~~~~~~e  335 (367)
                      ++++++.+.|+++ |+++..+.....+++.++.......++.+.|. ++|+ .+.++.. .  +..++|+++..   +++
T Consensus       296 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~~~~~~~~~iRi~~~~---~~~  370 (389)
T 1gd9_A          296 RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARV-AVVPGSAFGKAGEGYVRISYAT---AYE  370 (389)
T ss_dssp             HHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCE-ECEEGGGGCGGGTTBEEEECCS---CHH
T ss_pred             HHHHHHHHHHHHc-CCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCE-EEeCchhhCCCCCCeEEEEecC---CHH
Confidence            9999999999987 77765443333445555420123567888887 6774 4444321 1  24689997642   799


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy3048         336 DVAFAWNEISHQSSEM  351 (367)
Q Consensus       336 did~li~~l~~~~~~~  351 (367)
                      +++++++.|++++++.
T Consensus       371 ~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          371 KLEEAMDRMERVLKER  386 (389)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999988753

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.82  E-value=6.7e-20  Score=175.85  Aligned_cols=261  Identities=12%  Similarity=0.030  Sum_probs=173.5

Q ss_pred             ceEEEecCCcchhH---HHHHHhCCcceEEEec--C-CCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCCh
Q psy3048          30 RLVAYASDQSNSSV---EKSAIIGDVPVRQLRS--D-DNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~---~~~~~~~g~~v~~v~~--~-~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      +-.|++++.+|.+.   ..+++..|..++.++.  + +++.+|+++|++++++ .+      .+|+++.+++  |.+.|+
T Consensus       109 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~------~~v~~~~p~~--~~~~~l  180 (407)
T 2dkj_A          109 GDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRP------KVIVAGASAY--PRFWDF  180 (407)
T ss_dssp             TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCC------SEEEECCSSC--CSCCCH
T ss_pred             CCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCC------eEEEEecccc--CCCCCH
Confidence            34677778888776   3444555664445544  3 3688999999999975 33      3666665655  478899


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      ++|.++|++||+++++|++|+.+....+...   ...+..|+++.++||++.+|.+ |+++.++++...........+. 
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~~~-  255 (407)
T 2dkj_A          181 KAFREIADEVGAYLVVDMAHFAGLVAAGLHP---NPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFPGI-  255 (407)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTCSC---CCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTTTT-
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCccC---CccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcccc-
Confidence            9999999999999999999987544322111   1122369999999999988876 8888864443322110000000 


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                         .    ..                                      .......++.+++.....++++++.++..+++
T Consensus       256 ---~----~~--------------------------------------~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  290 (407)
T 2dkj_A          256 ---Q----GG--------------------------------------PLEHVIAGKAVAFFEALQPEFKEYSRLVVENA  290 (407)
T ss_dssp             ---C----SS--------------------------------------CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             ---c----CC--------------------------------------CcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               0    00                                      00011124445566554578899999999999


Q ss_pred             HHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-------CCeeEEEEEecCC---C
Q psy3048         263 KKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-------QGRPFLRFVVTSP---E  331 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------~~~~~lRi~~~~~---~  331 (367)
                      +++.+.|+++ |++++.+ ...+.+++.++.......++.+.|.++|+ .+.+...       ....++|++++..   .
T Consensus       291 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~  368 (407)
T 2dkj_A          291 KRLAEELARR-GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGI-TVNKNAIPFDPKPPRVTSGIRIGTPAITTRG  368 (407)
T ss_dssp             HHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred             HHHHHHHHhC-CceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCc-eecCCcCccccccccCCCceeeecccccccC
Confidence            9999999998 8888753 45677778775311135678888888884 4443321       1246899976321   3


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy3048         332 TNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~  350 (367)
                      .+++|+++++++|++++++
T Consensus       369 ~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          369 FTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             CCGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            6899999999999999876

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.82  E-value=7.8e-20  Score=174.85  Aligned_cols=253  Identities=11%  Similarity=0.015  Sum_probs=171.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|.++..+++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++
T Consensus       125 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~  198 (389)
T 1o4s_A          125 GDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKT------KAVLINSPNNPTGVVYRREFLEG  198 (389)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCc------eEEEEcCCCCCCCCCCCHHHHHH
Confidence            34677788899999999999999999999864  57899999999986543      47778899999999966   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+...  ... .+.+....|+++.+.||+++.| ..+|+++.++ +...........+ 
T Consensus       199 l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~-~~~~~l~~~~~~~-  275 (389)
T 1o4s_A          199 LVRLAKKRNFYIISDEVYDSLVYTDEFTSIL-DVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE-KVATAVSKIQSHT-  275 (389)
T ss_dssp             HHHHHHHHTCEEEEECTTTTSBCSSCCCCHH-HHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHHHH-
T ss_pred             HHHHHHHcCCEEEEEccccccccCCCCCCHh-hcCCCCCcEEEEeechhhcCCcccceEEEEeCH-HHHHHHHHHhhhc-
Confidence            99999999999999999987654211  111 1121224599999999999632 3388888743 3222110000000 


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                         .                                        +.      ...+...+++..+.. ++++..++..++
T Consensus       276 ---~----------------------------------------~~------~~~~~~~a~~~~l~~-~~~~~~~~~~~~  305 (389)
T 1o4s_A          276 ---T----------------------------------------SC------INTVAQYAALKALEV-DNSYMVQTFKER  305 (389)
T ss_dssp             ---T----------------------------------------CS------CCHHHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred             ---c----------------------------------------cC------CCHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence               0                                        00      011233333333322 367778888899


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      ++++.+.|+++ |+++..+.....+++.++   ....++.+.|. ++|+ .+.+. .+...+++|+++.   ++++++++
T Consensus       306 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi-~v~~g~~f~~~~~~Ris~~---~~~~~l~~  377 (389)
T 1o4s_A          306 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR---GDDVKFCERLLEEKKV-ALVPGSAFLKPGFVRLSFA---TSIERLTE  377 (389)
T ss_dssp             HHHHHHHHHHT-TCCCCCCSBSSEEEEECS---SCHHHHHHHHHHHHCE-ECEEGGGGTCTTEEEEECC---SCHHHHHH
T ss_pred             HHHHHHHHHhc-CCeeecCCcceEEEEeCC---CCHHHHHHHHHHHCCE-EEeCchhcCCCCeEEEEEe---CCHHHHHH
Confidence            99999999887 777654433334455554   12567888887 6774 44433 2222358999764   37999999


Q ss_pred             HHHHHHHHHH
Q psy3048         340 AWNEISHQSS  349 (367)
Q Consensus       340 li~~l~~~~~  349 (367)
                      +++.|+++++
T Consensus       378 ~l~~l~~~l~  387 (389)
T 1o4s_A          378 ALDRIEDFLN  387 (389)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.82  E-value=2e-19  Score=172.20  Aligned_cols=265  Identities=8%  Similarity=-0.063  Sum_probs=176.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-C--CCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCcccccCC---h
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-D--NGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGTCAFDN---L  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~--~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~G~i~d---l  102 (367)
                      .-.|++++.+|.++..+++..|++++.++.+ +  ++.+|+++|+++++ +.      +.+|++++++|++|.+.|   +
T Consensus       113 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~------~~~v~~~~~~nptG~~~~~~~l  186 (399)
T 1c7n_A          113 GDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKN------NKALLFCSPHNPVGRVWKKDEL  186 (399)
T ss_dssp             TCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTT------EEEEEEESSBTTTTBCCCHHHH
T ss_pred             CCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCC------CcEEEEcCCCCCCCcCcCHHHH
Confidence            3467778899999999999999999999874 3  24699999999996 33      347778999999999988   9


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC----CCcceeeeccccccccC-CcceeEEEecchhhhhhccCC
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      ++|+++|++||+++++|++|+.+.+....... +..+    ...++++.+.+|+++.| ..+|+++.++++.........
T Consensus       187 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~  265 (399)
T 1c7n_A          187 QKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV-FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSR  265 (399)
T ss_dssp             HHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCCCCccc-HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHH
Confidence            99999999999999999999875432110000 0111    12257888999999733 457888886544333211000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                      ..+                                              +......+....+.+++.. +.+.+++..++
T Consensus       266 ~~~----------------------------------------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~  298 (399)
T 1c7n_A          266 DAT----------------------------------------------SGMPFTTLGYKACEICYKE-CGKWLDGCIKV  298 (399)
T ss_dssp             HHT----------------------------------------------TCCCCCHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred             hhc----------------------------------------------ccCCCCHHHHHHHHHHHhC-ChHHHHHHHHH
Confidence            000                                              0000010112222333432 34567888888


Q ss_pred             HHHHHHHHHHHhcC-CCCeEEeCCCCceeE-EEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-EC--CeeEEEEEecCCC
Q psy3048         258 HISLAKKFADLVEK-DDRFELVCPPSMGLV-CFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-FQ--GRPFLRFVVTSPE  331 (367)
Q Consensus       258 ~~~la~~l~~~L~~-~~g~~~~~~~~~~~v-~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~~--~~~~lRi~~~~~~  331 (367)
                      ..++++++.+.|++ +||+.+..+ ..+.+ ++.++.......++.+.|. +.|+. +.++. +.  +..++|+++..  
T Consensus       299 ~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v~~g~~~~~~~~~~iRis~~~--  374 (399)
T 1c7n_A          299 IDKNQRIVKDFFEVNHPEIKAPLI-EGTYLQWIDFRALKMDHKAMEEFMIHKAQIF-FDEGYIFGDGGIGFERINLAA--  374 (399)
T ss_dssp             HHHHHHHHHHHHHHHCTTSBCCCC-SBSSEEEEECGGGCCCHHHHHHHHHHTTCCC-CEEGGGGCGGGTTEEEEECCS--
T ss_pred             HHHHHHHHHHHHHhhCCCCeEecC-CceEEEEEEcccCCCCHHHHHHHHHHhCCEE-EeCccccCCCCCCeEEEEecc--
Confidence            99999999999988 788876544 34444 4666531123567888887 67754 43332 21  34689997643  


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhC
Q psy3048         332 TNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~~  353 (367)
                       .+++++++++.|+++++++.+
T Consensus       375 -~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          375 -PSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHC-
T ss_pred             -CHHHHHHHHHHHHHHHHHHHh
Confidence             378999999999999887753

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.82  E-value=2.9e-19  Score=172.93  Aligned_cols=270  Identities=10%  Similarity=-0.006  Sum_probs=176.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC--CCccEEE-EEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK--GLIPCCL-VATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~--~~~~~~v-v~~~~~t~~G~i~d---l~  103 (367)
                      .-.|++.+.+|.++...++..|++++.++.++++ +|+++|++++++..++  +..+.+| ++++++|++|.+.|   ++
T Consensus       133 gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~  211 (425)
T 1vp4_A          133 ESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRK  211 (425)
T ss_dssp             TCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHH
Confidence            3456777889999999999999999999987655 8999999999862110  1113455 57889999999965   67


Q ss_pred             hHHHHHhhcCcEEEEecccccccccCh---hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|+++|++||+++++|++|+.+.+...   .... +. ....++++.+.+|+++.+..+|+++.+ ++...........+
T Consensus       212 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~-~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~l~~~~~~~  288 (425)
T 1vp4_A          212 ALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK-IG-GPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQAKQSA  288 (425)
T ss_dssp             HHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH-HH-CTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH-hC-CCCCEEEEeccccccccccceEEEeeC-HHHHHHHHHHhhhh
Confidence            899999999999999999987554211   1111 11 112368888999999833447888875 33332211000000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHI  259 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~  259 (367)
                                                                  .++   .+.+....+..+++.. ..+.+++..++..
T Consensus       289 --------------------------------------------~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  321 (425)
T 1vp4_A          289 --------------------------------------------DLC---SPAITHRLAARYLERYDLLEQLKPTIELYR  321 (425)
T ss_dssp             --------------------------------------------HSS---CCHHHHHHHHHHHHHSCHHHHTHHHHHHHH
T ss_pred             --------------------------------------------cCC---CCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                                                        000   0111122233333332 1345677777788


Q ss_pred             HHHHHHHHHhcCC-C---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E----CCeeEEEEEecCC
Q psy3048         260 SLAKKFADLVEKD-D---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F----QGRPFLRFVVTSP  330 (367)
Q Consensus       260 ~la~~l~~~L~~~-~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~lRi~~~~~  330 (367)
                      ++++++.+.|++. +   |+.+..+.....++++++. .....++.+.|.++|+ .+.++. +    .+..++|+++.. 
T Consensus       322 ~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~g~~f~~~~~~~~~iRis~~~-  398 (425)
T 1vp4_A          322 RKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE-GFDTWEMFEYAKRKKV-FYVPGRVFKVYDEPSPSMRLSFCL-  398 (425)
T ss_dssp             HHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT-TCCTTTTHHHHHHHTE-ECEEGGGGCTTCCCCSEEEEECSS-
T ss_pred             HHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCC-CCCHHHHHHHHHHCCC-EEECchhhcCCCCCCCeEEEEeCC-
Confidence            8899999998773 5   6887655555667777753 1224568888888874 444432 2    135699997743 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~~~  354 (367)
                       .+++|+++++++|+++++++.++
T Consensus       399 -~~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          399 -PPDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHhh
Confidence             37999999999999998876543

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.82  E-value=9.1e-20  Score=173.67  Aligned_cols=257  Identities=12%  Similarity=0.027  Sum_probs=171.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      +-.|++++.+|.++...++..|++++.++.+   +++.+|+++|++++++.+      .+|++++++|++|.+.|   ++
T Consensus       102 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~~~nptG~~~~~~~l~  175 (381)
T 1v2d_A          102 GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRT------RALLLNTPMNPTGLVFGERELE  175 (381)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCC------EEEEECCCCCCCCCccCHHHHH
Confidence            3467777889999999999999999999986   568899999999886543      57788899999999865   89


Q ss_pred             hHHHHHhhcCcEEEEecccccccccC--hhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLL--PEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~--~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|+++|++||+++++|++|+.+.+..  ..... +  ....|+++.+.||+++.| ..+|+++.++ +..+.... ...+
T Consensus       176 ~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~-~--~~~~~~~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~-~~~~  250 (381)
T 1v2d_A          176 AIARLARAHDLFLISDEVYDELYYGERPRRLRE-F--APERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAG-MRQW  250 (381)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHH-H--CTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHH-HHHH
T ss_pred             HHHHHHHHcCCEEEEEcCccccccCCCCCCHHH-h--cCCCEEEEeechhhcCCcccceEEEEeCH-HHHHHHHH-HHhh
Confidence            99999999999999999998764410  01111 1  123599999999998633 3388888743 22221100 0000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHI  259 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~  259 (367)
                      .                                           .++   ........+..+++... .+++++..++..
T Consensus       251 ~-------------------------------------------~~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  284 (381)
T 1v2d_A          251 T-------------------------------------------SFS---APTPLQAGVAEALKLARREGFYEALREGYR  284 (381)
T ss_dssp             H-------------------------------------------TSS---CCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             c-------------------------------------------ccC---CCcHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            0                                           000   00011223334444321 456788888999


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-EC----CeeEEEEEecCCCCCH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQ----GRPFLRFVVTSPETNQ  334 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~----~~~~lRi~~~~~~~~~  334 (367)
                      ++++++.+.|++. |+++..+.....+++.++..    + +.+.|.++|+ .+.+.. +.    +..++|+++..   ++
T Consensus       285 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~----~-~~~~l~~~gi-~v~~g~~~~~~~~~~~~iRi~~~~---~~  354 (381)
T 1v2d_A          285 RRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW----D-AFRLVEEARV-ALIPASAFYLEDPPKDLFRFAFCK---TE  354 (381)
T ss_dssp             HHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC----C-HHHHHHHTCE-ECEEGGGGCSSSCCTTEEEEECCS---CH
T ss_pred             HHHHHHHHHHHHC-CCEecCCCcceEEEEecChH----h-HHHHHHhCCE-EEecchHhCCCCCCCCEEEEEeCC---CH
Confidence            9999999999885 88877654444566666542    1 5555666774 444332 11    35699997643   79


Q ss_pred             HHHHHHHHHHHHHHHHhhC
Q psy3048         335 CDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       335 edid~li~~l~~~~~~~~~  353 (367)
                      +|++++++.|++++++.+.
T Consensus       355 ~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          355 EELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHhhccc
Confidence            9999999999998776543

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.82  E-value=4.4e-19  Score=167.86  Aligned_cols=249  Identities=11%  Similarity=0.032  Sum_probs=174.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec-CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.++...++..|++++.++. ++++ +|+++|++++++.+      .+|++++++|++|.+.|++++.++
T Consensus       106 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~l  178 (365)
T 3get_A          106 KNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEI------KLIFLCLPNNPLGECLDASEATEF  178 (365)
T ss_dssp             TCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCC------CEEEEcCCCCCCCCCcCHHHHHHH
Confidence            346777889999999999999999999998 5678 99999999997554      478889999999999999988888


Q ss_pred             Hh--hcCcEEEEecccccccc--c----ChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcc
Q psy3048         109 CQ--EYNIWLHVDAAYAGSAL--L----LPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       109 ~~--~~gi~l~vD~a~~~~~~--~----~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      ++  ++|+++++|++|+.+.+  .    .+.... . +....++++.+.+|+++ .+.++|+++. +++...........
T Consensus       179 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~  255 (365)
T 3get_A          179 IKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCEL-I-KEFDNVLYLGTFSKLYGLGGLRIGYGIA-NANIISAFYKLRAP  255 (365)
T ss_dssp             HHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHH-H-HHCTTEEEEEESSSTTSCTTTCCEEEEE-CHHHHHHHHHHSCT
T ss_pred             HHhCCCCcEEEEeCccHHHhcccCCcccccHhHH-h-ccCCCEEEEeecchHhcCcchheEEEEc-CHHHHHHHHHhcCC
Confidence            88  77999999999986542  1    111111 0 01123688889999996 4456888887 33333221110000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                                     +                               .   ...+....+..+++  ..+.+++..++..
T Consensus       256 ---------------~-------------------------------~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~  284 (365)
T 3get_A          256 ---------------F-------------------------------N---VSNLALKAAVAAMD--DDEFTEKTLENNF  284 (365)
T ss_dssp             ---------------T-------------------------------C---SCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             ---------------C-------------------------------C---cCHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence                           0                               0   00011223333333  2366888888999


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      ++++++.+.|+++ |+++. ++..+.+.+.++..  ...++.+.|.++|+ .+.++...+..++|+++.    +++|+++
T Consensus       285 ~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~~--~~~~~~~~l~~~gi-~v~~g~~~~~~~iRis~~----~~~~i~~  355 (365)
T 3get_A          285 SQMELYKEFAKKH-NIKII-DSYTNFITYFFDEK--NSTDLSEKLLKKGI-IIRNLKSYGLNAIRITIG----TSYENEK  355 (365)
T ss_dssp             HHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSSS--CHHHHHHHHHTTTE-ECEECGGGTCSEEEEECC----CHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCCC--CHHHHHHHHHHCCE-EEEECccCCCCEEEEEcC----CHHHHHH
Confidence            9999999999998 88875 44455677777642  46789999998884 444332222579999753    7999999


Q ss_pred             HHHHHHHHH
Q psy3048         340 AWNEISHQS  348 (367)
Q Consensus       340 li~~l~~~~  348 (367)
                      ++++|++++
T Consensus       356 l~~~l~~~l  364 (365)
T 3get_A          356 FFTEFDKIL  364 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.82  E-value=1.8e-19  Score=171.02  Aligned_cols=258  Identities=10%  Similarity=-0.007  Sum_probs=172.5

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~~  107 (367)
                      -.|+++..+|.++...++..|++++.++.+++  +|+++|++++++.+      .++++++++|++|.+.   ++++|++
T Consensus       106 d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~~------~~v~i~~p~nptG~~~~~~~l~~l~~  177 (377)
T 3fdb_A          106 SKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQAGA------RSILLCNPYNPLGMVFAPEWLNELCD  177 (377)
T ss_dssp             CCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHTTC------CEEEEESSBTTTTBCCCHHHHHHHHH
T ss_pred             CEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhccCC------CEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            34666778999999999999999999998766  99999999998754      4888899999999986   4677777


Q ss_pred             HHhhcCcEEEEecccccccccC-hhhhhhhCCC--CCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGL--EYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~--~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|++||+++++|++|+.+.+.. .... .+..+  ...++++.+.+|+++ .+..+|++++.++.......... .+.. 
T Consensus       178 ~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-~~~~-  254 (377)
T 3fdb_A          178 LAHRYDARVLVDEIHAPLVFDGQHTVA-AGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS-PVIK-  254 (377)
T ss_dssp             HHHHTTCEEEEECTTGGGBSSSCCCCG-GGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-HHHH-
T ss_pred             HHHHcCCEEEEEcccchhhcCCCCCcc-cHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-Hhhc-
Confidence            8999999999999998755432 1110 01111  112477888999995 34567877775544333211100 0000 


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                   .....+....+..++.. +.+.+++..++..++.+
T Consensus       255 ---------------------------------------------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~  288 (377)
T 3fdb_A          255 ---------------------------------------------DGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHD  288 (377)
T ss_dssp             ---------------------------------------------CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence                                                         00010112222333332 24567888889999999


Q ss_pred             HHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEEC---CeeEEEEEecCCCCCHHHHH
Q psy3048         264 KFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASFQ---GRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       264 ~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~---~~~~lRi~~~~~~~~~edid  338 (367)
                      ++.+.|++ +||+++..+.....+++.++.. ....++.+.|.++ | +.+.++...   +..++|+++.   +++++++
T Consensus       289 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~Ris~~---~~~e~i~  363 (377)
T 3fdb_A          289 FLLHEIPKRIPGAKITPMQATYLMWIDFRDT-TIEGSPSEFFIEKAK-VAMNDGAWFGEDGTGFCRLNFA---TSREVLE  363 (377)
T ss_dssp             HHHHHHHHHSTTCEECCCSBCSEEEEECTTS-CCCSCHHHHHHHHHC-EECEEGGGGCGGGTTEEEEECC---SCHHHHH
T ss_pred             HHHHHHHhhCCCceEecCCeeEEEEEECccc-CCCHHHHHHHHHhCC-EEecCChhccCCCCCEEEEEeC---CCHHHHH
Confidence            99999988 7899887554433445666541 1234667777766 6 445443221   2579999764   3799999


Q ss_pred             HHHHHHHHHHHH
Q psy3048         339 FAWNEISHQSSE  350 (367)
Q Consensus       339 ~li~~l~~~~~~  350 (367)
                      +++++|++++++
T Consensus       364 ~~l~~l~~~l~~  375 (377)
T 3fdb_A          364 EAIDRMAKAVSH  375 (377)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.82  E-value=1.5e-19  Score=170.92  Aligned_cols=257  Identities=12%  Similarity=0.018  Sum_probs=166.3

Q ss_pred             ceEEEecCCcchhH--HHHHHhCCcceEEEecC--C--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc-CCh
Q psy3048          30 RLVAYASDQSNSSV--EKSAIIGDVPVRQLRSD--D--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF-DNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~--~~~~~~~g~~v~~v~~~--~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i-~dl  102 (367)
                      +.+++ ....|++.  ...++..| +++.++.+  .  +..+|.++++  +++.      +.+|++++++|++|.+ .|+
T Consensus        93 d~vl~-~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~------t~~v~~~~~~n~tG~~~~~l  162 (362)
T 2c0r_A           93 QTANY-VMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDN------AAYLHLTSNETIEGAQFKAF  162 (362)
T ss_dssp             CEEEE-EECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTT------EEEEEEESEETTTTEECSSC
T ss_pred             CeEEE-EecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCC------cCEEEEeCCcCccceecccc
Confidence            44444 44566663  45666779 99999886  2  2235666554  4333      3588999999999995 888


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      ++|      +|+++++|++|+.+....+        +...|+++.++|||++ |.|+|+++.+++ .+.......+.++.
T Consensus       163 ~~i------~~~~vivD~a~~~~~~~~~--------~~~~d~~~~s~~K~~g-~~G~G~l~~~~~-~~~~l~~~~~~~~~  226 (362)
T 2c0r_A          163 PDT------GSVPLIGDMSSDILSRPFD--------LNQFGLVYAGAQKNLG-PSGVTVVIVRED-LVAESPKHLPTMLR  226 (362)
T ss_dssp             CCC------TTSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTC-CSSCEEEEEEGG-GSSSCCTTSCGGGC
T ss_pred             ccc------CCCEEEEEChhhccCCccc--------hhHCcEEEEecccccc-CcCcEEEEEcHH-HHhhccccCchHHh
Confidence            887      8999999999987654322        2223999999999995 889999998653 22211111111110


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISL  261 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~l  261 (367)
                      ..                 ..        ......+       ++   ...+...++.++++.+... +++++.++..++
T Consensus       227 ~~-----------------~~--------~~~~~~~-------~t---~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  271 (362)
T 2c0r_A          227 YD-----------------TY--------VKNNSLY-------NT---PPSFGIYMVNEVLKWIEERGGLEGVQQANRKK  271 (362)
T ss_dssp             HH-----------------HH--------HHTTTCS-------SC---CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HH-----------------HH--------hhccCcC-------CC---chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            00                 00        0000000       00   1112335556667665555 789999999999


Q ss_pred             HHHHHHHhcCCCCe-EEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEKDDRF-ELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~~~g~-~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      ++++.+.|++++++ ++..++   ..++++|.++. .....++.+.|.++|+. +.++. ...+.+|+|+ ..+++++|+
T Consensus       272 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~-~~~g~-~~~~~iRis~-~~~~~~e~i  347 (362)
T 2c0r_A          272 ASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-EELEKEFVKASEQEGFV-GLKGH-RSVGGLRASI-YNAVPYESC  347 (362)
T ss_dssp             HHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-HHHHHHHHHHHHHTTEE-SCBCC-TTTCSEEEEC-CTTSCHHHH
T ss_pred             HHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-cchHHHHHHHHHHCCCe-eccCC-CCCCEEEEEC-CCCCCHHHH
Confidence            99999999998546 775432   34567777753 34467888999888853 32221 1134699976 567789999


Q ss_pred             HHHHHHHHHHHHHh
Q psy3048         338 AFAWNEISHQSSEM  351 (367)
Q Consensus       338 d~li~~l~~~~~~~  351 (367)
                      ++++++|++++++.
T Consensus       348 ~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          348 EALVQFMEHFKRSR  361 (362)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987653

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.82  E-value=3.2e-20  Score=175.11  Aligned_cols=258  Identities=13%  Similarity=0.005  Sum_probs=169.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHH-HHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLT-AVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~-~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      -+|+++..+|++.. .++..| +++.+++++ ++.+|+++|++ ++++.+      .+|++++++|++|.+.|     +|
T Consensus        95 ~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~------k~v~~~~~~nptG~~~~-----~i  161 (360)
T 1w23_A           95 NYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNEND------AYLHITSNNTIYGTQYQ-----NF  161 (360)
T ss_dssp             EEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTE------EEEEEESEETTTTEECS-----SC
T ss_pred             cEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCCCC------CEEEEeCCCCCcceecc-----cc
Confidence            36777888887743 356679 999999874 56789999998 775444      58888999999999865     33


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +++||+++++|++|+.+....+        +...|++++++||+++ |.|+|+++++++ .+.......+.++...    
T Consensus       162 ~~~~~~~li~D~a~~~~~~~~~--------~~~~di~~~s~sK~~~-~~G~G~~~~~~~-~~~~~~~~~~~~~~~~----  227 (360)
T 1w23_A          162 PEINHAPLIADMSSDILSRPLK--------VNQFGMIYAGAQKNLG-PSGVTVVIVKKD-LLNTKVEQVPTMLQYA----  227 (360)
T ss_dssp             CCCCSSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTS-CTTCEEEEEEHH-HHCSCCTTCCGGGCHH----
T ss_pred             cccCCceEEEechhhcCCCCcC--------cccCCEEEEEcccccC-CCCcEEEEEcHH-HHhhcccCCcchhhhh----
Confidence            4489999999999987654322        1112899999999886 779999998643 2222111111111000    


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~la~~l~~  267 (367)
                                .+.           ...          +............+..+++.+... +++++.++..++++++.+
T Consensus       228 ----------~~~-----------~~~----------~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~  276 (360)
T 1w23_A          228 ----------THI-----------KSD----------SLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYD  276 (360)
T ss_dssp             ----------HHH-----------HTT----------TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             ----------hhh-----------hcc----------CCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence                      000           000          000001112224455566655555 789999999999999999


Q ss_pred             HhcCCCCe-EEeCCC--Cce-eEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRF-ELVCPP--SMG-LVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~-~~~~~~--~~~-~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|++++++ .+..++  ..+ +++|++++ .....++.+.|.++|+.. .+.. ....++|+++ ..+++++|+++++++
T Consensus       277 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~-~~~~-~~~~~iRis~-~~~~~~~~i~~~~~~  352 (360)
T 1w23_A          277 TIDESNGFYVGHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVG-LNGH-RSVGGCRASI-YNAVPIDACIALREL  352 (360)
T ss_dssp             HHHTTTTSSEESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEES-CBCC-TTTCSEEEEC-CTTSCHHHHHHHHHH
T ss_pred             HHHHccCcccccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeee-ecCC-CCCCeEEEEe-cCCCCHHHHHHHHHH
Confidence            99998765 554222  334 77787754 234567888888888543 2221 1235899976 567789999999999


Q ss_pred             HHHHHHH
Q psy3048         344 ISHQSSE  350 (367)
Q Consensus       344 l~~~~~~  350 (367)
                      |++++++
T Consensus       353 l~~~~~~  359 (360)
T 1w23_A          353 MIQFKEN  359 (360)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998765

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.82  E-value=2.9e-18  Score=162.65  Aligned_cols=249  Identities=12%  Similarity=0.011  Sum_probs=173.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|++++.+|.++..+++..|++++.++.++++.+|+++|++++++ .+      .+|++++++|++|.+.|++++.++
T Consensus       116 gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~nptG~~~~~~~l~~l  189 (369)
T 3cq5_A          116 GRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQP------DIVFVTTPNNPTGDVTSLDDVERI  189 (369)
T ss_dssp             TCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCC------SEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCC------CEEEEeCCCCCCCCCCCHHHHHHH
Confidence            34677778899999999999999999999887789999999999986 33      367789999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      |+.+++++++|++|+.+....+... ........++++.+.||+++.| ..+|+++.++ +...........        
T Consensus       190 ~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~--------  259 (369)
T 3cq5_A          190 INVAPGIVIVDEAYAEFSPSPSATT-LLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP-AFIDAVMLVRLP--------  259 (369)
T ss_dssp             HHHCSSEEEEECTTGGGCCSCCGGG-GTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT-HHHHHHHTTSCT--------
T ss_pred             HHhCCCEEEEECCchhhcCCcchHH-HHhhCCCCEEEEEechHhcCCcccceEEEEeCH-HHHHHHHHcCCC--------
Confidence            9999999999999987654211111 1111111368889999999743 4578888854 333221110000        


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                             |                               +   ...+....+..+++.  .+.+++..++..++++++.+
T Consensus       260 -------~-------------------------------~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~  296 (369)
T 3cq5_A          260 -------Y-------------------------------H---LSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAA  296 (369)
T ss_dssp             -------T-------------------------------C---SCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHH
T ss_pred             -------C-------------------------------C---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHH
Confidence                   0                               0   000111222333332  34577788888899999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .|++. |+++. ++..+.+.+.++.   ...++.+.|.++|+ .+.+.  ..+.++|+++.    +++|+++++++|+++
T Consensus       297 ~L~~~-g~~~~-~~~~~~~~~~~~~---~~~~l~~~l~~~gi-~v~~~--~~~~~iRis~~----~~~~i~~~~~~l~~~  364 (369)
T 3cq5_A          297 RLEEL-GYAVV-PSESNFVFFGDFS---DQHAAWQAFLDRGV-LIRDV--GIAGHLRTTIG----VPEENDAFLDAAAEI  364 (369)
T ss_dssp             HHHHH-TCEEE-CCSSSEEEEECCS---SHHHHHHHHHHTTE-ECBCC--SCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCEEC-CCCCeEEEEECCC---CHHHHHHHHHHCCE-EEEEC--CCCCeEEEEeC----CHHHHHHHHHHHHHH
Confidence            99884 88876 4555667776641   25678888888884 44333  22468999763    689999999999987


Q ss_pred             HH
Q psy3048         348 SS  349 (367)
Q Consensus       348 ~~  349 (367)
                      ++
T Consensus       365 ~~  366 (369)
T 3cq5_A          365 IK  366 (369)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.81  E-value=2.8e-19  Score=170.56  Aligned_cols=256  Identities=11%  Similarity=0.004  Sum_probs=172.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      .-.|++++.+|.++...++..|++++.++.+. ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++|
T Consensus       115 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG~~~~~~~l~~i  188 (386)
T 1u08_A          115 GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT------RLVILNTPHNPSATVWQQADFAAL  188 (386)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccC------EEEEEeCCCCCCCccCCHHHHHHH
Confidence            34677778899999999999999999999865 58899999999986443      57778899999999864   7999


Q ss_pred             HHHHhhcCcEEEEecccccccccCh---hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      +++|++||+++++|++|+.+.+...   .... +.+....|+++.+.||+++.| ..+|+++.++ +....... ...+.
T Consensus       189 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~l~~-~~~~~  265 (386)
T 1u08_A          189 WQAIAGHEIFVISDEVYEHINFSQQGHASVLA-HPQLRERAVAVSSFGKTYHMTGWKVGYCVAPA-PISAEIRK-VHQYL  265 (386)
T ss_dssp             HHHHTTSCCEEEEECTTTTCBCCSSCCCCGGG-SHHHHTTEEEEEEHHHHTTCGGGCCEEEECCH-HHHHHHHH-HHHHH
T ss_pred             HHHHHHcCcEEEEEccccccccCCCCCcChhc-ccCccCcEEEEecchhhcCCcccceEEEEcCH-HHHHHHHH-HHHhh
Confidence            9999999999999999987544221   1100 000112489999999998733 3488888753 32222100 00000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                                                                 .++   ........+..+++.. .+.+++..++..++
T Consensus       266 -------------------------------------------~~~---~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~  298 (386)
T 1u08_A          266 -------------------------------------------TFS---VNTPAQLALADMLRAE-PEHYLALPDFYRQK  298 (386)
T ss_dssp             -------------------------------------------TSS---CCHHHHHHHHHHHHHC-THHHHTHHHHHHHH
T ss_pred             -------------------------------------------ccC---CChHHHHHHHHHHhCC-cHHHHHHHHHHHHH
Confidence                                                       000   0001122333444432 55678888899999


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-hHHHHHHHHHh-ccCcEEEEEeE-E----CCeeEEEEEecCCCCCH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLM-SHKQIYIIKAS-F----QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-~~~~~l~~~L~-~~g~~~~~~~~-~----~~~~~lRi~~~~~~~~~  334 (367)
                      ++++.+.|+++ |+++..+.....++++++... ....++.+.|. +.|+ .+.++. +    .+..++|+++.   +++
T Consensus       299 ~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~f~~~~~~~~~iRis~~---~~~  373 (386)
T 1u08_A          299 RDILVNALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGV-AAIPLSVFCADPFPHKLIRLCFA---KKE  373 (386)
T ss_dssp             HHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCE-ECEEGGGGCSSCCCSCEEEEECC---SCH
T ss_pred             HHHHHHHHHHC-CCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCE-EEeCchHhCCCCCCCCEEEEEEc---CCH
Confidence            99999999987 888765544456777775310 23567888876 4574 444332 2    24579999764   379


Q ss_pred             HHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISH  346 (367)
Q Consensus       335 edid~li~~l~~  346 (367)
                      +|+++++++|++
T Consensus       374 ~~i~~~~~~l~~  385 (386)
T 1u08_A          374 STLLAAAERLRQ  385 (386)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998864

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.81  E-value=9.5e-19  Score=167.14  Aligned_cols=263  Identities=11%  Similarity=-0.012  Sum_probs=172.0

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      -.|++.+.+|.++...++..|++++.++.+.   ++.+|+++|++++++..     +.+|++++++|++|.+.|   +++
T Consensus       112 d~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~-----~~~v~l~~p~nptG~~~~~~~l~~  186 (390)
T 1d2f_A          112 EGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPE-----CKIMLLCSPQNPTGKVWTCDELEI  186 (390)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTT-----EEEEEEESSCTTTCCCCCTTHHHH
T ss_pred             CEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCC-----CeEEEEeCCCCCCCcCcCHHHHHH
Confidence            4667778899999999999999999998853   24689999999996421     357777899999999966   899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCC-C-cceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-Y-VDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-~-~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+....... +..+. . .|. +.+.+|+++ .+..+|+++++++.........    .
T Consensus       187 l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~----~  260 (390)
T 1d2f_A          187 MADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSA----L  260 (390)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHH----H
T ss_pred             HHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHH----H
Confidence            999999999999999999876542211100 11121 1 256 888999997 3345788888654433221100    0


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ... .                                      .+.  ....+....+.++++. +.+.+++..++..++
T Consensus       261 ~~~-~--------------------------------------~~~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~  298 (390)
T 1d2f_A          261 KGR-D--------------------------------------GLS--SPSVLALTAHIAAYQQ-GAPWLDALRIYLKDN  298 (390)
T ss_dssp             HTT-S--------------------------------------CCC--SCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred             hhh-c--------------------------------------ccC--CCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            000 0                                      000  0000111222333432 345678888888999


Q ss_pred             HHHHHHHhcC-CCCeEEeCCCCceeE-EEEEcCCchHHHHHHHHHh-ccCcEEEEEeEE-C--CeeEEEEEecCCCCCHH
Q psy3048         262 AKKFADLVEK-DDRFELVCPPSMGLV-CFRLKGDNDLTNQLYERLM-SHKQIYIIKASF-Q--GRPFLRFVVTSPETNQC  335 (367)
Q Consensus       262 a~~l~~~L~~-~~g~~~~~~~~~~~v-~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~-~--~~~~lRi~~~~~~~~~e  335 (367)
                      .+++.+.|++ +||+.+..+ ..+.+ .+.++.......++.+.|. +.|+ .+.++.. .  +..++|+++..   +++
T Consensus       299 ~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi-~v~~g~~f~~~~~~~~Ris~~~---~~~  373 (390)
T 1d2f_A          299 LTYIADKMNAAFPELNWQIP-QSTYLAWLDLRPLNIDDNALQKALIEQEKV-AIMPGYTYGEEGRGFVRLNAGC---PRS  373 (390)
T ss_dssp             HHHHHHHHHHHCSSCCCCCC-SBCSEEEEECGGGCCCHHHHHHHHHHTTCE-ECEEGGGGCGGGTTEEEEECCS---CHH
T ss_pred             HHHHHHHHHhhCCCCEEecC-CccEEEEEEccccCCCHHHHHHHHHHHcCE-EeeCccccCCCCCCeEEEEecC---CHH
Confidence            9999999988 788876543 34443 5666531123567888888 5674 4444322 1  34689997643   488


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy3048         336 DVAFAWNEISHQSSEM  351 (367)
Q Consensus       336 did~li~~l~~~~~~~  351 (367)
                      +++.+++.|+++++++
T Consensus       374 ~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          374 KLEKGVAGLINAIRAV  389 (390)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999988764

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.81  E-value=1.6e-18  Score=169.12  Aligned_cols=270  Identities=11%  Similarity=0.025  Sum_probs=175.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEE-EEecCCCcccccCC---hhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL-VATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~v-v~~~~~t~~G~i~d---l~~I  105 (367)
                      .-.|++.+.+|.++..+++..|++++.++.++++ +|+++|+++++.....+..+.+| ++.+++|++|.+.|   +++|
T Consensus       164 Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i  242 (448)
T 3aow_A          164 GDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYL  242 (448)
T ss_dssp             TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHH
Confidence            3456777889999999999999999999987655 99999999997321111124455 56788999999865   5799


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      .++|++||+++++|++|+.+.+.......  .+ +....++...+.+|+++.+..+|+++.++ +..+........+   
T Consensus       243 ~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~-~~~~~vi~~~S~SK~~~~GlriG~v~~~~-~l~~~l~~~~~~~---  317 (448)
T 3aow_A          243 LELASEYDFIVVEDDPYGELRYSGNPEKKIKAL-DNEGRVIYLGTFSKILAPGFRIGWMVGDP-GIIRKMEIAKQST---  317 (448)
T ss_dssp             HHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGG-CTTSCEEEEEESTTTTCGGGCCEEEEECH-HHHHHHHHHHHHH---
T ss_pred             HHHHHHcCCEEEEECCCccccCCCCCCcCHHhc-CCCCCEEEEccchhhccccccEEEEEeCH-HHHHHHHHHHHHh---
Confidence            99999999999999999876542211000  01 11123678888999998333489988853 3332211000000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la  262 (367)
                                                               .++   ...+....+..+|+..+ .+.++++.++..+++
T Consensus       318 -----------------------------------------~~~---~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~  353 (448)
T 3aow_A          318 -----------------------------------------DLC---TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRR  353 (448)
T ss_dssp             -----------------------------------------HSS---CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------cCC---CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                                                     000   01111222333333211 344677777777889


Q ss_pred             HHHHHHhcC-CC-CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E----CCeeEEEEEecCCCCCHH
Q psy3048         263 KKFADLVEK-DD-RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F----QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       263 ~~l~~~L~~-~~-g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~lRi~~~~~~~~~e  335 (367)
                      +++.+.|++ +| |+++..|.....++++++. .....++.++|.++|+. +.++. +    .+..++|+++..  .+++
T Consensus       354 ~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~-~~~~~~l~~~l~~~gV~-v~pg~~f~~~~~~~~~iRls~~~--~~~e  429 (448)
T 3aow_A          354 DAMLEALEEFMPEGVKWTKPEGGMFIWVTLPD-GIDSKKMLERAIKKGVA-YVPGEAFYAHRDVKNTMRLNFTY--VDED  429 (448)
T ss_dssp             HHHHHHHHHHCCTTCEECCCSBSSEEEEECST-TCCHHHHHHHHHHTTEE-CEEGGGGSTTCCCCSEEEEECSS--SCTH
T ss_pred             HHHHHHHHHhCCCCeEEeCCCccEEEEEEcCC-CCCHHHHHHHHHHCCcE-EEcchhhcCCCCCCCEEEEEeCC--CCHH
Confidence            999999986 57 6887655555566777753 22356889999989854 44332 2    235799997643  3789


Q ss_pred             HHHHHHHHHHHHHHHhhC
Q psy3048         336 DVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       336 did~li~~l~~~~~~~~~  353 (367)
                      ||+.++++|.+++++..+
T Consensus       430 ~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          430 KIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999887643

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.80  E-value=1.7e-18  Score=167.05  Aligned_cols=267  Identities=12%  Similarity=0.093  Sum_probs=166.0

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++.+|.+....+    +..|++++.++.      |+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus        95 gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~l~~~i~~~~------~~v~~~~~~n~~G~~~~l~~i  162 (412)
T 2cb1_A           95 GDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP------EPEAVREALSAKT------RAVFVETVANPALLVPDLEAL  162 (412)
T ss_dssp             TCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS------SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC------CHHHHHHHhccCC------eEEEEeCCCCCCcccccHHHH
Confidence            346777888999877764    347889998875      3899999887654      488889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchh-hhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANH-LTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~-~~~~~~~~~~yl~~  183 (367)
                      +++|++||+++++|++|+.+.+......   .   .+|+++.++||++++|.+ .|++++.++.. ..+.....++....
T Consensus       163 ~~l~~~~~~~li~D~~~~~~~~~~~~~~---~---~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  236 (412)
T 2cb1_A          163 ATLAEEAGVALVVDNTFGAAGALCRPLA---W---GAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG  236 (412)
T ss_dssp             HHHHHHHTCEEEEECGGGTTTTSCCGGG---G---TCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred             HHHHHHcCCEEEEECCCccccccCCccc---c---CCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence            9999999999999999987622222111   1   359999999999998876 78888765331 10000000111100


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccc-ccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQ-TPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...     ...+.-..+...       +            +.+. ...+....+...+..+.  +.+.+.++.++..+++
T Consensus       237 ~~~-----~~~~~~~~~~~~-------~------------r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~~~~~~~~~~  290 (412)
T 2cb1_A          237 QIP-----WEALRARCFPER-------V------------RTLGLSLCGMALSPFNAYLLFQ--GLETVALRVARMSETA  290 (412)
T ss_dssp             --------HHHHGGGHHHHH-------H------------HHHHTTTTCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHH
T ss_pred             cch-----hhccchHHHHHH-------H------------HHHHHHhcCCCCChHHhHHHHc--CCchHHHHHHHHHHHH
Confidence            000     000000000000       0            0000 00011112233333332  3445667777788999


Q ss_pred             HHHHHHhcCCCCeEEe-CC----------------CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe--------EE
Q psy3048         263 KKFADLVEKDDRFELV-CP----------------PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA--------SF  317 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~-~~----------------~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~--------~~  317 (367)
                      +++.+.|.+++++.++ .|                ...++++|.+ + +  .+.+...|.+.|++. ..+        ..
T Consensus       291 ~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~--~~~~~~~l~~~~i~~-~~s~g~~~sl~~~  365 (412)
T 2cb1_A          291 RFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D--LERASRFLGAIRLLK-AANLGDARTLLVH  365 (412)
T ss_dssp             HHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S--HHHHHHHHHHCSSEE-CSCCSCSSCEEEC
T ss_pred             HHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C--HHHHHHHHHhCCeee-ecccCCCcceeec
Confidence            9999999999998855 22                1346888988 4 2  345555666666543 221        11


Q ss_pred             C----------------C--eeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         318 Q----------------G--RPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       318 ~----------------~--~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      .                |  ++.+|+|+ ..++++++|+.++++|++
T Consensus       366 ~~~~~~~~~~~~~~~~~g~~~~~iR~s~-g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          366 PWTTTHSRLKEEARLQAGVTPGLVRVSV-GLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             TTTTTTTTSCHHHHHHTTCCTTEEEEEC-CSSCHHHHHHHHHHHHHC
T ss_pred             CcccccccCCHHHHHhcCCCCCeEEEEe-ccCCHHHHHHHHHHHHhh
Confidence            1                1  46899976 678889999999999864

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.2e-19  Score=174.65  Aligned_cols=262  Identities=13%  Similarity=0.014  Sum_probs=173.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC---CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~---~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      .-.|++++.+|.++..+++..|++++.++.+.   ++.+|+++|++++++.+      .+|++++++|++|.+.|   ++
T Consensus       110 gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~------~~v~l~~~~nptG~~~~~~~l~  183 (411)
T 2o0r_A          110 GSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT------RALIINSPHNPTGAVLSATELA  183 (411)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc------eEEEEeCCCCCCCCCCCHHHHH
Confidence            34677788899999999999999999998864   46799999999986543      57778899999999865   59


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhh-hh-hhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEY-AH-LKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +|+++|++||+++++|++|+.+.+..... .. .+.+....|+++.+.+|+++ ++|  +|+++.+ ++....... ...
T Consensus       184 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~-~~~~~~l~~-~~~  260 (411)
T 2o0r_A          184 AIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN-CTGWKIGWACGP-AELIAGVRA-AKQ  260 (411)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT-CTTTCEEEEECC-HHHHHHHHH-HHH
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC-CccceEEEEeeC-HHHHHHHHH-HHh
Confidence            99999999999999999998765421110 00 01111245899999999886 345  8888874 333322110 000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      +..                                           ++   .......++..+++. +.+.+++..++..
T Consensus       261 ~~~-------------------------------------------~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~  293 (411)
T 2o0r_A          261 YLS-------------------------------------------YV---GGAPFQPAVALALDT-EDAWVAALRNSLR  293 (411)
T ss_dssp             HHT-------------------------------------------SC---CCTTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             hcc-------------------------------------------CC---CChHHHHHHHHHHhC-ChHHHHHHHHHHH
Confidence            000                                           00   000112333444443 2566788888899


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHh-ccCcEEEEEe-EE---C----------CeeEE
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLM-SHKQIYIIKA-SF---Q----------GRPFL  323 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~-~~g~~~~~~~-~~---~----------~~~~l  323 (367)
                      ++++++.+.|+++ |+++..+.....+++.++.. .....++.++|. +.|+ .+.++ .+   .          +..++
T Consensus       294 ~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~f~~~~~~~~~~~~~~~~~~i  371 (411)
T 2o0r_A          294 ARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGV-AAIPMSAFCDPAAGQASQQADVWNHLV  371 (411)
T ss_dssp             HHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSE-ECEEGGGGSCCC--------CCGGGCE
T ss_pred             HHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCE-EEcChhhhCCCccccccccccCCCCeE
Confidence            9999999999887 88876544333667777531 012567888776 4574 44432 11   1          35689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      |+++.   ++++|++++++.|++++++..
T Consensus       372 Ris~~---~~~e~i~~~~~~l~~~~~~~~  397 (411)
T 2o0r_A          372 RFTFC---KRDDTLDEAIRRLSVLAERPA  397 (411)
T ss_dssp             EEECC---SCHHHHHHHHHHHGGGGC---
T ss_pred             EEEec---CCHHHHHHHHHHHHHHHhccC
Confidence            99763   379999999999998765543

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.80  E-value=8.6e-19  Score=167.40  Aligned_cols=275  Identities=12%  Similarity=0.063  Sum_probs=171.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|++++.+|.+...+++..|++++.++.++ ++.+|+++|++++++.+      .+|+++   +++|.+.|+++|.++
T Consensus        79 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~~~---~~~G~~~~~~~i~~l  149 (393)
T 1mdo_A           79 GDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQT------KAIIPV---HYAGAPADLDAIYAL  149 (393)
T ss_dssp             TCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTE------EEECCB---CGGGCCCCHHHHHHH
T ss_pred             CCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCc------eEEEEe---CCCCCcCCHHHHHHH
Confidence            34677889999999999999999999999875 47899999999987543      355554   479999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|++|+.+......  .  .+.  .|++++++|  |++.++ .+|+++.++++..................
T Consensus       150 ~~~~~~~li~D~a~~~g~~~~~~--~--~~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~  222 (393)
T 1mdo_A          150 GERYGIPVIEDAAHATGTSYKGR--H--IGA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW  222 (393)
T ss_dssp             HHHHTCCBCEECTTCTTCEETTE--E--TTS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred             HHHcCCeEEEECccccCCeECCe--e--cCC--CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence            99999999999999865432211  1  121  599999999  999754 56666665444333221100000000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                         .   .+     ..   ..|.. ++..           ......+...+  .+++.....+++++..++..++++++.
T Consensus       223 ---~---~~-----~~---~~~~~-~~~~-----------~~g~~~~~~~~--~~a~~~~~l~~~~~~~~~~~~~~~~l~  274 (393)
T 1mdo_A          223 ---D---RQ-----SG---GRAPQ-AEVL-----------APGYKYNLPDL--NAAIALAQLQKLDALNARRAAIAAQYH  274 (393)
T ss_dssp             -----------------------C-CEES-----------SCCCBCCCCHH--HHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             ---h---hh-----cc---ccccc-cccc-----------ccCccCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0   00     00   00000 0000           00000011222  222222234567888888999999999


Q ss_pred             HHhcCCCCeEEeCCC------CceeEEEEEcCC--chHHHHHHHHHhccCcEEEEEeEEC--------------------
Q psy3048         267 DLVEKDDRFELVCPP------SMGLVCFRLKGD--NDLTNQLYERLMSHKQIYIIKASFQ--------------------  318 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~------~~~~v~f~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~--------------------  318 (367)
                      +.|++++ +++..++      ....+.++++..  .....++.+.|.++|+. +.+....                    
T Consensus       275 ~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~-v~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (393)
T 1mdo_A          275 QAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIG-TGLHFRAAHTQKYYRERFPTLTLPDTE  352 (393)
T ss_dssp             HHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBC-CBCCCCCGGGSHHHHHHSTTCCCHHHH
T ss_pred             HHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCC-cccccCccccChhhhccCCccCChhHH
Confidence            9999985 7775422      223567776520  11356888999888853 3322111                    


Q ss_pred             --CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         319 --GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       319 --~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                        ...++|+++ ..+++++|+++++++|+++++..
T Consensus       353 ~~~~~~lRi~~-~~~~t~~~i~~~~~~l~~~~~~~  386 (393)
T 1mdo_A          353 WNSERICSLPL-FPDMTESDFDRVITALHQIAGQG  386 (393)
T ss_dssp             HHHTTEEEECC-CTTCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHhCEEEecC-CCCCCHHHHHHHHHHHHHHHhcC
Confidence              023799954 67889999999999999987654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.80  E-value=3.3e-19  Score=170.89  Aligned_cols=262  Identities=12%  Similarity=0.036  Sum_probs=170.8

Q ss_pred             ceEEEecCCcchhHHH-H--HHhCCc--ceEEEecC-CCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCCh
Q psy3048          30 RLVAYASDQSNSSVEK-S--AIIGDV--PVRQLRSD-DNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~-~--~~~~g~--~v~~v~~~-~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl  102 (367)
                      +-.|++++.+|.+... .  +...|.  +++.++++ +++.+|+++|++++++ .+      .+|+++ + +..|...|+
T Consensus       109 gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~------~~v~~~-~-~~~~~~~~l  180 (405)
T 2vi8_A          109 GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRP------KLIVAA-A-AAYPRIIDF  180 (405)
T ss_dssp             TCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCC------SEEEEC-C-SSCCSCCCH
T ss_pred             CCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCC------eEEEEe-C-CCCCccCCH
Confidence            3456667788877643 1  123343  66777765 5788999999999976 33      255443 3 335777799


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      ++|.++|++||+++++|++|+.+....+...   ..+..+|+++.++||++++|.| |+++.+ ++...........+..
T Consensus       181 ~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~~~~-~~~~~~l~~~~~~~~~  255 (405)
T 2vi8_A          181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMILCQ-EQFAKQIDKAIFPGIQ  255 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEEEEC-HHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHcCCEEEEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEEEEc-HHHHHHHHhhhccccc
Confidence            9999999999999999999985433222111   1123469999999999998888 888875 3333221000000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      .        .+                                      ......++.+++.....++++++.++..+++
T Consensus       256 ~--------~~--------------------------------------~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~  289 (405)
T 2vi8_A          256 G--------GP--------------------------------------LMHVIAAKAVAFGEALQDDFKAYAKRVVDNA  289 (405)
T ss_dssp             S--------SC--------------------------------------CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             C--------CC--------------------------------------CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            0        00                                      0011233345555554568889999999999


Q ss_pred             HHHHHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-------ECCeeEEEEEecC---CC
Q psy3048         263 KKFADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-------FQGRPFLRFVVTS---PE  331 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-------~~~~~~lRi~~~~---~~  331 (367)
                      +++.+.|+++ |+++..++ ..+.+.+.++.......++.+.|.++|+ .+.++.       ..+..++|+++..   +.
T Consensus       290 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~  367 (405)
T 2vi8_A          290 KRLASALQNE-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGI-TVNKNTIPYDPESPFVTSGIRIGTAAVTTRG  367 (405)
T ss_dssp             HHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTE-ECEEECCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred             HHHHHHHHhC-CCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCc-eeccCcCccccCCCCCCCceEEeeeeeeecC
Confidence            9999999998 89887643 4667777775311135678888888884 444332       1134579997642   24


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh
Q psy3048         332 TNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~  352 (367)
                      .+++|+++++++|+++++++.
T Consensus       368 ~~~~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          368 FGLEEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTT
T ss_pred             CCHHHHHHHHHHHHHHHhccc
Confidence            679999999999999876543

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.80  E-value=3.6e-19  Score=167.21  Aligned_cols=257  Identities=15%  Similarity=0.089  Sum_probs=158.0

Q ss_pred             eEEEecCCcchhHHH---HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-cccCC---hh
Q psy3048          31 LVAYASDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAFDN---LE  103 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~---~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i~d---l~  103 (367)
                      -.|++++.+|.+...   .+...|++++.+ .++++.+|+++|++++++.......+.+|++++++|++ |.+.|   ++
T Consensus        78 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~  156 (347)
T 1jg8_A           78 DEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK  156 (347)
T ss_dssp             CEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred             CEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHH
Confidence            356667889987653   566789999988 55678899999999986410000123578889999999 99855   57


Q ss_pred             hHHHHHhhcCcEEEEecccccccc---cChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSAL---LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~---~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|+++|++||+++++|++|..+.+   ..+. .....   .+|.+++++||+++.|  .|++++.+++.+.+..... .+
T Consensus       157 ~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~---~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~~~~~-~~  229 (347)
T 1jg8_A          157 EICTIAKEHGINVHIDGARIFNASIASGVPV-KEYAG---YADSVMFCLSKGLCAP--VGSVVVGDRDFIERARKAR-KM  229 (347)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHHHCCCH-HHHHH---TCSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHCCCEEEeehhhhhcchhhcCCCh-HHhcc---cccEEEEecccccCCC--ceEEEEcCHHHHHHHHHHH-HH
Confidence            889999999999999998743211   1111 11111   3488889999999876  4544444444333211000 00


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      ......                                           ... ..+.....+++..     .+..++..+
T Consensus       230 ~~~~~~-------------------------------------------~~~-~~~~~~~~~l~~~-----~~~~~~~~~  260 (347)
T 1jg8_A          230 LGGGMR-------------------------------------------QAG-VLAAAGIIALTKM-----VDRLKEDHE  260 (347)
T ss_dssp             HTCCCS-------------------------------------------STH-HHHHHHHHHHHHS-----STTHHHHHH
T ss_pred             cCCchh-------------------------------------------HHH-HHHHHHHHHHHHH-----HHHHHHHHH
Confidence            100000                                           000 0011111223221     112233445


Q ss_pred             HHHHHHHHhcCCCCeEEe-CCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHH
Q psy3048         261 LAKKFADLVEKDDRFELV-CPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAF  339 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~  339 (367)
                      .++++.+.|+++ |+++. .++..+.++++++.......++.++|.++|+. +.+.   +..++|+++ +.+++++|+++
T Consensus       261 ~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~~---~~~~iRl~~-~~~~~~e~i~~  334 (347)
T 1jg8_A          261 NARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVL-ANAV---SDTEIRLVT-HKDVSRNDIEE  334 (347)
T ss_dssp             HHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEE-CEEE---ETTEEEEEC-CTTSCHHHHHH
T ss_pred             HHHHHHHHHHhc-CceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCE-EecC---CCCeEEEEe-CCCCCHHHHHH
Confidence            677888888777 77653 24556777787753122356888999888844 3332   135899965 56789999999


Q ss_pred             HHHHHHHHHHH
Q psy3048         340 AWNEISHQSSE  350 (367)
Q Consensus       340 li~~l~~~~~~  350 (367)
                      ++++|++++++
T Consensus       335 ~~~~l~~~l~~  345 (347)
T 1jg8_A          335 ALNIFEKLFRK  345 (347)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.80  E-value=7.3e-19  Score=167.73  Aligned_cols=264  Identities=11%  Similarity=0.030  Sum_probs=168.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHH-HHH--hhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAV-KED--LAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l-~~~--~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|+++..+|.++..++...|+++++++++ +++.+|+++|++++ ++.  +      .+|+   +++++|.+.|+++|
T Consensus        78 Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~t------k~v~---~~~~~G~~~~~~~i  148 (377)
T 3ju7_A           78 GKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEV------AIVV---PYATFGSWMNLEEY  148 (377)
T ss_dssp             CCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGE------EEEC---CBCGGGBCCCCHHH
T ss_pred             cCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCc------eEEE---EECCCCCccCHHHH
Confidence            3467778899999999999999999999997 57899999999998 555  4      2444   45679999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhh-CCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      .++|+ ||+++++|++|+.+......  . . ......+++++++||++++ ...|++++++++...+....    ...+
T Consensus       149 ~~la~-~~~~vi~D~a~a~g~~~~~~--~-~g~~~~d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~----~~~g  219 (377)
T 3ju7_A          149 EELEK-KGVPVVVDAAPGFGLMNGGM--H-YGQDFSGMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRM----GNFG  219 (377)
T ss_dssp             HHHHH-TTCCBEEECTTCTTCEETTE--E-TTTTCSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHH----TBTT
T ss_pred             HHHHh-cCCEEEEECCCccCCeECCE--e-ccCCCCcEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHH----HhcC
Confidence            99999 99999999999866442211  0 1 0112346777778999987 45666666665443322100    0000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..      ..+                            .  ....+.++....+.+++...+.+.++++.++.++++++
T Consensus       220 ~~------~~~----------------------------~--~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~  263 (377)
T 3ju7_A          220 FD------TNR----------------------------E--CTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEW  263 (377)
T ss_dssp             BC------TTS----------------------------C--BCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CC------CCC----------------------------c--eeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00      000                            0  00001111122333444444556788889999999999


Q ss_pred             HHHHhcCCCCeEE-eCCC----Cc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE---------EC-----------
Q psy3048         265 FADLVEKDDRFEL-VCPP----SM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS---------FQ-----------  318 (367)
Q Consensus       265 l~~~L~~~~g~~~-~~~~----~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------~~-----------  318 (367)
                      +.+.|++++++.+ +.++    .. ..+.+.++. ....+++.+.|.++|+. +....         +.           
T Consensus       264 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~-~~~~~~~~~~~~~~~~~~~~~~~p~~~  341 (377)
T 3ju7_A          264 YKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE-EVRNKQVIEDLKKQKIE-ARLYFSPSCHQQVLFRNYKSTDLTRTN  341 (377)
T ss_dssp             HHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-TSCHHHHHHHHHTTTBC-CBCTTSSCGGGSGGGTTSCBSCCHHHH
T ss_pred             HHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-hhhHHHHHHHHHHCCCc-eecccCCccccchhhhcCCCCCCHHHH
Confidence            9999998865422 1111    11 123444442 22256899999998843 21110         00           


Q ss_pred             --CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         319 --GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       319 --~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                        ....+|+ +.++.++++|++++++.|+++++.
T Consensus       342 ~~~~~~l~l-p~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          342 KIAKRIVSL-PLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHHHHEEEE-CCCTTCCHHHHHHHHHHHTC----
T ss_pred             HHHhCEEEC-CCCCCCCHHHHHHHHHHHHHHHhc
Confidence              1347999 567889999999999999887664

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.80  E-value=3e-18  Score=161.95  Aligned_cols=245  Identities=11%  Similarity=0.030  Sum_probs=165.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH---HH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL---GP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I---~~  107 (367)
                      -.|++++.+|.++...++..|++++.++.++++.+|+++|+++++ .+      .+|++++++|++|.+.|.++|   ++
T Consensus       101 d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~~------~~v~l~~p~nptG~~~~~~~l~~l~~  173 (356)
T 1fg7_A          101 DAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-GV------KVVYVCSPNNPTGQLINPQDFRTLLE  173 (356)
T ss_dssp             CEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-TE------EEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-CC------CEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            467778899999999999999999999988778899999998885 33      578888999999999775555   55


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      +|+ +|+++++|++|+.+... ..... +.+....+++..+.+|+++ .+..+|+++.+ ++...........|      
T Consensus       174 ~~~-~~~~li~De~~~~~~~~-~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~------  243 (356)
T 1fg7_A          174 LTR-GKAIVVADEAYIEFCPQ-ASLAG-WLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPY------  243 (356)
T ss_dssp             HHT-TTCEEEEECTTGGGSGG-GCSGG-GTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSS------
T ss_pred             hCC-CCCEEEEEccchhhcCC-CcHHH-HHhhCCCEEEEecchHhhcCchhhhEEEEeC-HHHHHHHHHhcCCC------
Confidence            566 99999999999865411 11000 1011123688889999986 33457888884 33332211100000      


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH---HHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG---LQAYLRKHISLAK  263 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~~~~~~~~la~  263 (367)
                                                              +      ...+...+++..+...+   +++..++..++++
T Consensus       244 ----------------------------------------~------~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  277 (356)
T 1fg7_A          244 ----------------------------------------P------LSTPVADIAAQALSPQGIVAMRERVAQIIAERE  277 (356)
T ss_dssp             ----------------------------------------C------SCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------C------CCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence                                                    0      01133344444444433   6778888889999


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eEECC-eeEEEEEecCCCCCHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-ASFQG-RPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~-~~~lRi~~~~~~~~~edid~li  341 (367)
                      ++.+.|++++++....++..+.+.++++    ...++.+.|.++|+ .+.+ +...+ .+++|+++.    +++|+++++
T Consensus       278 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI-~v~~~g~~~~~~~~iRis~~----~~~e~~~~~  348 (356)
T 1fg7_A          278 YLIAALKEIPCVEQVFDSETNYILARFK----ASSAVFKSLWDQGI-ILRDQNKQPSLSGCLRITVG----TREESQRVI  348 (356)
T ss_dssp             HHHHHHHHSTTEEEECCCSSSEEEEEET----THHHHHHHHHHTTE-ECEECTTSTTCTTEEEEECC----CHHHHHHHH
T ss_pred             HHHHHHHhCCCceEECCCCCeEEEEECC----CHHHHHHHHHHCCE-EEEECCCCCCCCCeEEEEeC----CHHHHHHHH
Confidence            9999999887654444556667777775    25678888987884 4444 32222 358999763    589999999


Q ss_pred             HHHHHH
Q psy3048         342 NEISHQ  347 (367)
Q Consensus       342 ~~l~~~  347 (367)
                      ++|+++
T Consensus       349 ~~l~~~  354 (356)
T 1fg7_A          349 DALRAE  354 (356)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            998764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.80  E-value=1.3e-18  Score=167.04  Aligned_cols=264  Identities=11%  Similarity=0.051  Sum_probs=169.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.++..+++..|++++.++.++ ++.+|+++|++++++.+      .+|+   +++++|.+.|+++|.++
T Consensus       103 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~---~~n~tG~~~~l~~i~~l  173 (399)
T 2oga_A          103 GDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRT------RALL---PVHLYGHPADMDALREL  173 (399)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTE------EEEC---CBCGGGCCCCHHHHHHH
T ss_pred             cCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCC------eEEE---EeCCcCCccCHHHHHHH
Confidence            34677788899999999999999999999875 58899999999987543      3444   35789999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |+++|+++++|++|+.+......  .  .+ ...|++++++|  |+++.|..+|+++.++++.......    +...+..
T Consensus       174 ~~~~~~~li~Dea~~~g~~~~~~--~--~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~----~~~~g~~  244 (399)
T 2oga_A          174 ADRHGLHIVEDAAQAHGARYRGR--R--IG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRM----LRNYGSR  244 (399)
T ss_dssp             HHHHTCEECEECTTCTTCEETTE--E--TT-CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHH----HHBTTCS
T ss_pred             HHHcCCEEEEECcccccCccCCe--e--cc-cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHH----HHhcCcc
Confidence            99999999999999865332111  1  11 12488999985  9997644456666654443322110    0000000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..|                            .............+..++++..  .+.++++.++..++++++.
T Consensus       245 ------~~~----------------------------~~~~~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~  288 (399)
T 2oga_A          245 ------QKY----------------------------SHETKGTNSRLDEMQAAVLRIR--LAHLDSWNGRRSALAAEYL  288 (399)
T ss_dssp             ------STT----------------------------CCCSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHH
T ss_pred             ------ccc----------------------------cccccccCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence                  001                            0000000001122333332222  2345667778889999999


Q ss_pred             HHhcCCCCeEEeCCC-Cce-e-EEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-----------C-------------
Q psy3048         267 DLVEKDDRFELVCPP-SMG-L-VCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-----------G-------------  319 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-~~~-~-v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----------~-------------  319 (367)
                      +.|++++|+++...+ ..+ . +.|.+...  ...++.+.|.++|+. +.+....           +             
T Consensus       289 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  365 (399)
T 2oga_A          289 SGLAGLPGIGLPVTAPDTDPVWHLFTVRTE--RRDELRSHLDARGID-TLTHYPVPVHLSPAYAGEAPPEGSLPRAESFA  365 (399)
T ss_dssp             HHTTTCTTCBCCCCCTTEECCCSSEEEECS--SHHHHHHHHHHTTBC-CBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHH
T ss_pred             HHhccCCCccccCCCCCCcceeEEEEEECC--CHHHHHHHHHHCCCc-eecCCCCccccchhhcccCCCCCCChhHHHHH
Confidence            999999888765433 222 1 12443321  256788889888853 3221100           0             


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..++|+++ +.+++++|+++++++|+++++++
T Consensus       366 ~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          366 RQVLSLPI-GPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             HHEEEECC-STTCCHHHHHHHHHHHHHHHHSC
T ss_pred             hCEEEccC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence            25899964 67889999999999999998754

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.80  E-value=8.7e-19  Score=166.55  Aligned_cols=257  Identities=14%  Similarity=0.032  Sum_probs=170.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .-.|++.+.+|.++...++..|++++.++.++++.+|+++|++++++.+      .+|++++++|++|.+.|   +++|+
T Consensus       111 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG~~~~~~~l~~l~  184 (376)
T 2dou_A          111 EDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWREA------KVLLLNYPNNPTGAVADWGYFEEAL  184 (376)
T ss_dssp             TCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHHE------EEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             CCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccCc------eEEEECCCCCCcCccCCHHHHHHHH
Confidence            3457778889999999999999999999985566799999999997654      47778889999999865   78899


Q ss_pred             HHHhhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++||+++++|++|+.+.+...... ....+....++++.+.+|+++.| ..+|+++.+ ++...........+    
T Consensus       185 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~----  259 (376)
T 2dou_A          185 GLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGS-EEALARLERVKGVI----  259 (376)
T ss_dssp             HHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEEC-HHHHHHHHHHHHHH----
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecC-HHHHHHHHHHHHhc----
Confidence            999999999999999987654211000 00111112367888999999643 457888764 33332211000000    


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                .. ....+....+..+++. +.+.+++..++..+++++
T Consensus       260 ------------------------------------------~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~  295 (376)
T 2dou_A          260 ------------------------------------------DF-NQYAGVLRMGVEALKT-PKEVVRGYARVYRERALG  295 (376)
T ss_dssp             ------------------------------------------CC-CSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cc-CCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence                                                      00 0000111223333332 245678888888999999


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-C--CeeEEEEEecCCCCCHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-Q--GRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~--~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.+.|+++  +++..+.....+.++++. .....++.+.|.++|+ .+.+... .  +..++|+++..   +++++++++
T Consensus       296 l~~~L~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi-~v~~g~~f~~~~~~~~Ris~~~---~~~~i~~~l  368 (376)
T 2dou_A          296 MAEALKGV--LSLLPPRATMYLWGRLPE-GVDDLEFGLRLVERGV-ALAPGRGFGPGGKGFVRIALVR---PLEELLEAA  368 (376)
T ss_dssp             HHHHHTTT--SEECCCCBSSEEEEECCT-TCCHHHHHHHHHHTTE-ECEEGGGGCGGGTTEEEEECCS---CHHHHHHHH
T ss_pred             HHHHHHHh--cCccCCCeeEEEEEECCC-CCCHHHHHHHHHHCCE-EEcCchhhCCCCCCeEEEEecC---CHHHHHHHH
Confidence            99999886  666544333346677753 2234678889988874 4443322 1  24689997642   689999999


Q ss_pred             HHHHHHH
Q psy3048         342 NEISHQS  348 (367)
Q Consensus       342 ~~l~~~~  348 (367)
                      +.|++++
T Consensus       369 ~~l~~~l  375 (376)
T 2dou_A          369 KRIREAL  375 (376)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9998753

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.80  E-value=4.2e-18  Score=164.89  Aligned_cols=266  Identities=9%  Similarity=-0.006  Sum_probs=173.6

Q ss_pred             eEEEecCCcchhHHHHHHh-CCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAII-GDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~-~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++++.+|.++...++. .|++++.++.++ ++.+|+++|++++++..   ..+.++++++++|++|.+.|   +++|
T Consensus       138 d~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~~~~~~~l~~i  214 (430)
T 2x5f_A          138 DTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYN---KDKVIMILNYPNNPTGYTPTHKEVTTI  214 (430)
T ss_dssp             CEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCC---SSEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcC---CCCEEEEEcCCCCCCCCcCCHHHHHHH
Confidence            4567778899999999999 999999999864 47899999999997621   11357888999999999988   8999


Q ss_pred             HHHHhh-----cCcEEEEecccccccccCh---hhhhhhCCCCCc---ceeeeccccccccC-CcceeEEE--ecchhhh
Q psy3048         106 GPICQE-----YNIWLHVDAAYAGSALLLP---EYAHLKRGLEYV---DSFAFNAHKWLLTN-HDCSAMWV--KNANHLT  171 (367)
Q Consensus       106 ~~l~~~-----~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~---D~~~~~~hK~l~~p-~g~g~l~~--~~~~~~~  171 (367)
                      +++|++     ||+++++|++|+.+.+...   .....+.+....   ++++.+.+|+++.| ..+|+++.  +++....
T Consensus       215 ~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~  294 (430)
T 2x5f_A          215 VEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKE  294 (430)
T ss_dssp             HHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHH
T ss_pred             HHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHH
Confidence            999999     9999999999987654321   111011122223   56688899999644 44788888  2333332


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH-Hh-hHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR-SY-GLK  249 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~  249 (367)
                      ..............         +                                  ....+....+..+++ .. ..+
T Consensus       295 ~l~~~~~~~~~~~~---------~----------------------------------~~~~~~~~a~~~~l~~~~~~~~  331 (430)
T 2x5f_A          295 VLEAKVKGLIRSNI---------S----------------------------------SGPLPTQSAVKHVLKNNKQFDK  331 (430)
T ss_dssp             HHHHHHHHHHHTTT---------S----------------------------------SCCHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHhhhhhccc---------C----------------------------------CCChHHHHHHHHHHccChHHHH
Confidence            21100000000000         0                                  001111222333333 21 122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc----CCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEECCeeEEE
Q psy3048         250 GLQAYLRKHISLAKKFADLVE----KDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASFQGRPFLR  324 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~lR  324 (367)
                      .+++..++..++.+++.+.|+    ++ |+++..+.....+++.+++  ....++.+.|.+ +|+ .+.++   +..++|
T Consensus       332 ~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~gi-~v~~g---~~~~iR  404 (430)
T 2x5f_A          332 EIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVHD--VDPEALRKHLIDKYSI-GVIAL---NATDIR  404 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEESS--SCHHHHHHHHHHHHCE-ECEEC---SSSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCCC--CCHHHHHHHHHHhCCE-EEecC---CCCeEE
Confidence            344477788889999999998    55 7877644333346677752  235688888887 774 44443   456899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +++..  ++++|+++++++|+++++++
T Consensus       405 is~~~--~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          405 IAFSC--VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             EEGGG--SCGGGHHHHHHHHHHHHHHH
T ss_pred             EEEec--CCHHHHHHHHHHHHHHHHhc
Confidence            97642  48999999999999998764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.80  E-value=9.3e-19  Score=167.12  Aligned_cols=258  Identities=11%  Similarity=-0.026  Sum_probs=168.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|+++..+|.++...++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|+||.+.+   +++
T Consensus       115 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~NPtG~~~~~~~l~~  188 (385)
T 1b5p_A          115 GDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRT------KALVVNSPNNPTGAVYPKEVLEA  188 (385)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCC------EEEEEeCCCCCCCCCcCHHHHHH
Confidence            34567777899999999999999999999863  57899999999886544      47888899999999854   999


Q ss_pred             HHHHHhhcCcEEEEecccccccccCh--hhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+..+  .... +..  ..+++..+.+|+++.| ..+|+++.++ +........    .
T Consensus       189 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~--~~~i~~~s~SK~~~~~G~RiG~~~~~~-~~~~~l~~~----~  260 (385)
T 1b5p_A          189 LARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-VAP--EHTLTVNGAAKAFAMTGWRIGYACGPK-EVIKAMASV----S  260 (385)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-TCT--TTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHH----H
T ss_pred             HHHHHHHcCCEEEEEccchhcccCCCCCCHHH-cCC--CCEEEEEechhhcCCcccceEEEEeCH-HHHHHHHHH----H
Confidence            99999999999999999986544211  1111 111  2367888999998743 3488888743 322221100    0


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hhHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YGLKGLQAYLRKHI  259 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~g~~~~~~~~~  259 (367)
                      .....                                        .   ...+....+..++..  .+.+.+++..++..
T Consensus       261 ~~~~~----------------------------------------~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  297 (385)
T 1b5p_A          261 RQSTT----------------------------------------S---PDTIAQWATLEALTNQEASRAFVEMAREAYR  297 (385)
T ss_dssp             HTTTC----------------------------------------S---CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhccC----------------------------------------C---CCHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            00000                                        0   000111222223322  03445777788888


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EECCeeEEEEEecCCCCCHHHHH
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~edid  338 (367)
                      +..+++.+.|+++ |+++..+.....++..++.......++.+.|.++|+ .+.++ .+...+++|+++.   +++++++
T Consensus       298 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv-~v~~g~~f~~~~~iRis~~---~~~~~i~  372 (385)
T 1b5p_A          298 RRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGV-AVVPGTDFAAFGHVRLSYA---TSEENLR  372 (385)
T ss_dssp             HHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTE-ECEESGGGTCTTEEEEECC---SCHHHHH
T ss_pred             HHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCe-EEecccccCCCCeEEEEec---CCHHHHH
Confidence            8999999999887 777654443334444554211235678888887774 44433 2222468999763   6789999


Q ss_pred             HHHHHHHHHHH
Q psy3048         339 FAWNEISHQSS  349 (367)
Q Consensus       339 ~li~~l~~~~~  349 (367)
                      ++++.|+++++
T Consensus       373 ~~l~~l~~~l~  383 (385)
T 1b5p_A          373 KALERFARVLG  383 (385)
T ss_dssp             HHHHHGGGGC-
T ss_pred             HHHHHHHHHHh
Confidence            99998877643

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.79  E-value=1.3e-18  Score=166.42  Aligned_cols=257  Identities=10%  Similarity=0.026  Sum_probs=168.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      -.|++++.+|.++...++..|++++.++.++ ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++|+
T Consensus       125 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~~l~~l~  198 (398)
T 3ele_A          125 DEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHT------RGVIINSPNNPSGTVYSEETIKKLS  198 (398)
T ss_dssp             CEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTE------EEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCC------CEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            4677788899999999999999999999874 67999999999987644      47888899999999977   77777


Q ss_pred             HHHhh------cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchh----hhhhcc
Q psy3048         107 PICQE------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANH----LTNTFF  175 (367)
Q Consensus       107 ~l~~~------~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~----~~~~~~  175 (367)
                      ++|++      ||+++++|++|+.+.+........ ......++++.+.+|+++ .+.++|+++.++...    +...+.
T Consensus       199 ~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~  277 (398)
T 3ele_A          199 DLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV-TKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVC  277 (398)
T ss_dssp             HHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG-GGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHH
T ss_pred             HHHHhhhhccCCCeEEEEeccccccccCCCCcCCh-HhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHH
Confidence            99999      999999999998754422111110 111123688889999997 556789988765411    100000


Q ss_pred             CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHH
Q psy3048         176 TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYL  255 (367)
Q Consensus       176 ~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  255 (367)
                         .+......        +                                  .   ...+...++...+....   ..
T Consensus       278 ---~~~~~~~~--------~----------------------------------~---~~~~~~~a~~~~l~~~~---~~  306 (398)
T 3ele_A          278 ---GAGRALGY--------V----------------------------------C---APSLFQKMIVKCQGATG---DI  306 (398)
T ss_dssp             ---HHHHHTTC--------C----------------------------------C---SCHHHHHHHTTCTTCCC---CH
T ss_pred             ---HHhhhccc--------c----------------------------------C---CCHHHHHHHHHHhcCHH---HH
Confidence               00000000        0                                  0   00112222211111111   23


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe-EECCeeEEEEEecCCCCCH
Q psy3048         256 RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA-SFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~~~~~lRi~~~~~~~~~  334 (367)
                      ++..++++++.+.|+++ |+++..+.....+++.++..  ...++.+.|.++|+ .+.++ .+..+.++|+++.   +++
T Consensus       307 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi-~v~~g~~~~~~~~iRis~~---~~~  379 (398)
T 3ele_A          307 NAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED--DSNAFCEKAKEEDV-LIVAADGFGCPGWVRISYC---VDR  379 (398)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS--CHHHHHHHHHTTTE-ECEESGGGTCTTEEEEECC---SCH
T ss_pred             HHHHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC--CHHHHHHHHHHCCE-EEeCccccCCCCeEEEEec---CCH
Confidence            45667778888888776 77776554434466776542  36688888888885 44433 2233569999763   589


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3048         335 CDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       335 edid~li~~l~~~~~~~~  352 (367)
                      +|+++++++|+++++++.
T Consensus       380 e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          380 EMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999988764

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.79  E-value=6.7e-19  Score=166.98  Aligned_cols=248  Identities=8%  Similarity=0.026  Sum_probs=166.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.+|.++...++..|++++.++      +|+++|++++++.+      .+|++++++|++|.+.|++ |.++|
T Consensus       113 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~~~~-l~~~~  179 (370)
T 2z61_A          113 GDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALSDKT------KAIIINSPSNPLGEVIDRE-IYEFA  179 (370)
T ss_dssp             TCEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCCSSE------EEEEEESSCTTTCCCCCHH-HHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcccCc------eEEEEcCCCCCcCcccCHH-HHHHH
Confidence            34677788999999999999999998887      69999999886533      4777889999999999999 99999


Q ss_pred             hhcCcEEEEecccccccccChhhh-hhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~-~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+.+...... ..+.+....|+++.+.||+++.| ..+|+++.++ +...........+.      
T Consensus       180 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~-~~~~~~~~~~~~~~------  252 (370)
T 2z61_A          180 YENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND-EIIEAILKLQQNLF------  252 (370)
T ss_dssp             HHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHHHHT------
T ss_pred             HHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH-HHHHHHHHHHhhcc------
Confidence            999999999999987654211000 01111224589999999999633 3388888754 32221100000000      


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh---hHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY---GLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~g~~~~~~~~~~la~~  264 (367)
                                                            ++   .   ..+...++...+   +.+.+++..++..++.++
T Consensus       253 --------------------------------------~~---~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  288 (370)
T 2z61_A          253 --------------------------------------IS---A---PTISQYAALKAFEKETEREINSMIKEFDRRRRL  288 (370)
T ss_dssp             --------------------------------------SS---S---CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------cC---C---CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence                                                  00   0   012222222222   355677888889999999


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-EC--CeeEEEEEecCCCCCHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-FQ--GRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.+.|+++ |+++..+.....+.+.++.   ...++.+.|. ++|+ .+.+.. +.  +..++|+++.   +++++++++
T Consensus       289 l~~~L~~~-g~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi-~v~~g~~f~~~~~~~~Ri~~~---~~~~~i~~~  360 (370)
T 2z61_A          289 VLKYVKDF-GWEVNNPIGAYYVFPNIGE---DGREFAYKLLKEKFV-ALTPGIGFGSKGKNYIRISYA---NSYENIKEG  360 (370)
T ss_dssp             HHHHHHHT-TCBCCCCCBTTEECCBCSS---CHHHHHHHHHHHHCE-ECEEGGGGCGGGSSBEEEECC---SCHHHHHHH
T ss_pred             HHHHHHHc-CCeecCCCcceEEEEecCC---CHHHHHHHHHHhCCE-EEeCchhhCCCCCCEEEEEEe---CCHHHHHHH
Confidence            99999887 7776544332334445542   3567888887 5674 444332 11  2568999764   589999999


Q ss_pred             HHHHHHHHH
Q psy3048         341 WNEISHQSS  349 (367)
Q Consensus       341 i~~l~~~~~  349 (367)
                      ++.|+++++
T Consensus       361 ~~~l~~~l~  369 (370)
T 2z61_A          361 LERIKEFLN  369 (370)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999988754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.79  E-value=7.9e-18  Score=165.21  Aligned_cols=263  Identities=12%  Similarity=0.056  Sum_probs=156.7

Q ss_pred             CceEEEecCCcchhHHH--------HHHhCCcceE--EEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          29 SRLVAYASDQSNSSVEK--------SAIIGDVPVR--QLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~--------~~~~~g~~v~--~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.-.|++++..|.+...        .+...|..++  .++++ +++.+|+++|++++++..     |.+|+++.++  .|
T Consensus       143 pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~-----~klIi~~~s~--~~  215 (490)
T 2a7v_A          143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIAGTSA--YA  215 (490)
T ss_dssp             SCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEECCSS--CC
T ss_pred             CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcC-----CcEEEEcCCC--CC
Confidence            34466777777654211        2345565443  44444 468999999999997532     3466555433  46


Q ss_pred             ccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchh--------
Q psy3048          98 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH--------  169 (367)
Q Consensus        98 ~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~--------  169 (367)
                      ...|+++|+++|++||+++++|+||+.+.+..+.....   +..+|++++++||+|.+|.| |+++.++...        
T Consensus       216 ~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~---~~~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~  291 (490)
T 2a7v_A          216 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGR  291 (490)
T ss_dssp             SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEE
T ss_pred             CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCC---CCCCCEEEECCcccCccccc-hheeeccchhcccccccc
Confidence            67899999999999999999999997654432211111   12469999999999988876 8888765310        


Q ss_pred             -----hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHH
Q psy3048         170 -----LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTL  243 (367)
Q Consensus       170 -----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l  243 (367)
                           +.+.+   ...++.+.                                           ++++.. ...++.+++
T Consensus       292 ~~~~~l~~~i---~~~~~~g~-------------------------------------------qggp~~~~iaAla~Al  325 (490)
T 2a7v_A          292 EIPYTFEDRI---NFAVFPSL-------------------------------------------QGGPHNHAIAAVAVAL  325 (490)
T ss_dssp             EEECCCHHHH---HHHHTTTT-------------------------------------------CCSCCHHHHHHHHHHH
T ss_pred             hhhHHHHHHH---HHHhcccC-------------------------------------------CCCchHHHHHHHHHHH
Confidence                 00000   00011100                                           011111 123334455


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-----
Q psy3048         244 RSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-----  317 (367)
Q Consensus       244 ~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-----  317 (367)
                      .....+.++++.++..++++++.+.|++. |++++.+ ...+++.+.+........++.+.|.+.|+ .+.....     
T Consensus       326 ~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI-~v~~~~~p~d~~  403 (490)
T 2a7v_A          326 KQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSI-TANKNTCPGDRS  403 (490)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTE-ECEEECCTTCCC
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCe-EEecCccCCCCC
Confidence            55444566888889999999999999986 9998753 35677777775432235677778877774 4443211     


Q ss_pred             -CCeeEEEEEe---cCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         318 -QGRPFLRFVV---TSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       318 -~~~~~lRi~~---~~~~~~~edid~li~~l~~~~~~  350 (367)
                       ..+..+|++.   ++...+++|++++++.|.++++.
T Consensus       404 p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          404 AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence             1245799954   23456899999999999988764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.79  E-value=8.1e-19  Score=168.76  Aligned_cols=259  Identities=9%  Similarity=-0.032  Sum_probs=170.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      -.|++++.+|.++...++..|++++.++.++ ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++|+
T Consensus       134 d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG~~~~~~~l~~l~  207 (404)
T 2o1b_A          134 DYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKT------KLIYLTYPNNPTGSTATKEVFDEAI  207 (404)
T ss_dssp             CEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHE------EEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCc------eEEEEcCCCCCCCccCCHHHHHHHH
Confidence            4566778899999999999999999999875 56689999999997654      47777889999999964   78999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++||+++++|++|+.+.+....... ...+....++++.+.+|+++.| ..+|+++.+ ++......... .+..  
T Consensus       208 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~-~~~~--  283 (404)
T 2o1b_A          208 AKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN-KDMIQALKKYQ-THTN--  283 (404)
T ss_dssp             HHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHH-HHHC--
T ss_pred             HHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC-HHHHHHHHHHH-hhcc--
Confidence            9999999999999999875432110000 0000112378899999999743 457888764 33332211000 0000  


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                               ++   ...+....+..+++. +.+.+++..++..++.++
T Consensus       284 -----------------------------------------~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~  318 (404)
T 2o1b_A          284 -----------------------------------------AG---MFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDR  318 (404)
T ss_dssp             -----------------------------------------CC---CCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------CC---CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence                                                     00   000111222333333 245678888888999999


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-EC--CeeEEEEEecCCCCCHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-FQ--GRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +.+.|+++ |+++..+.....++++++. .....++.++|.+ .|+ .+.++. +.  +..++|+++..   ++++++.+
T Consensus       319 l~~~L~~~-g~~~~~~~~g~~~~~~~~~-~~~~~~l~~~l~~~~gi-~v~~g~~f~~~~~~~iRis~~~---~~e~l~~~  392 (404)
T 2o1b_A          319 FEAMLAKA-DLPFVHAKGGIYVWLETPP-GYDSEQFEQFLVQEKSI-LVAPGKPFGENGNRYVRISLAL---DDQKLDEA  392 (404)
T ss_dssp             HHHHHHHT-TCCEECCCBSSEEEEECCT-TCCHHHHHHHHHHHHCE-ECEESGGGCGGGTTEEEEECCS---CTTHHHHH
T ss_pred             HHHHHHhc-CCeecCCCcceEEEEeCCC-CCCHHHHHHHHHHHCCE-EEeCchhhCcCCCCeEEEEEcC---CHHHHHHH
Confidence            99999887 7877644332346666653 2234678888774 574 444432 11  24689997643   67899999


Q ss_pred             HHHHHHHHHH
Q psy3048         341 WNEISHQSSE  350 (367)
Q Consensus       341 i~~l~~~~~~  350 (367)
                      ++.|++++++
T Consensus       393 l~~l~~~l~~  402 (404)
T 2o1b_A          393 AIRLTELAYL  402 (404)
T ss_dssp             HHHHHGGGGG
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.79  E-value=9.7e-19  Score=169.27  Aligned_cols=258  Identities=11%  Similarity=0.011  Sum_probs=173.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC----------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD  100 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~----------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~  100 (367)
                      -.|++++.+|.++...++..|++++.++.+.          ++.+|+++|++++++.+      .+|++++++|++|.+.
T Consensus       126 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~~~~p~nptG~~~  199 (429)
T 1yiz_A          126 DEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT------KMIIINTPHNPLGKVM  199 (429)
T ss_dssp             CEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE------EEEEEESSCTTTCCCC
T ss_pred             CEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCc------eEEEECCCCCCCCccC
Confidence            4567777899999999999999999999864          46799999999986443      5777889999999997


Q ss_pred             C---hhhHHHHHhhcCcEEEEecccccccccChhhh-h-hhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhh
Q psy3048         101 N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYA-H-LKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNT  173 (367)
Q Consensus       101 d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~  173 (367)
                      |   +++|+++|++||+++++|++|+.+.+...... . .+.+....|+++.+.+|+++ ++|  +|+++.++ +.....
T Consensus       200 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~-~~~~~l  277 (429)
T 1yiz_A          200 DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFS-LTGWKIGWAYGPE-ALLKNL  277 (429)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHT-CGGGCCEEEESCH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccC-CCCcceEEEEeCH-HHHHHH
Confidence            4   99999999999999999999987544221100 0 01112235899999999887 335  89888753 333221


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh----h--
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY----G--  247 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~--  247 (367)
                      ... ..+.            .+                               +   ...+....+..+++..    +  
T Consensus       278 ~~~-~~~~------------~~-------------------------------~---~~~~~~~a~~~~l~~~~~~~~~~  310 (429)
T 1yiz_A          278 QMV-HQNC------------VY-------------------------------T---CATPIQEAIAVGFETELKRLKSP  310 (429)
T ss_dssp             HHH-HHTT------------TC-------------------------------C---CCHHHHHHHHHHHHHHHTTTTST
T ss_pred             HHH-Hhhc------------cc-------------------------------C---CChHHHHHHHHHHhcccccccch
Confidence            100 0000            00                               0   0001122333444431    2  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc-----------hHHHHHHHHHh-ccCcEEEEEe
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN-----------DLTNQLYERLM-SHKQIYIIKA  315 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----------~~~~~l~~~L~-~~g~~~~~~~  315 (367)
                      .+.+++..++..++++++.+.|+++ |+++..+.....++++++...           ....++.++|. ++|+ .+.++
T Consensus       311 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv-~v~~g  388 (429)
T 1yiz_A          311 ECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGL-QGIPP  388 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSE-ECBCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCE-EEeCc
Confidence            4457888888899999999999887 788765544456777775420           23567888886 5674 44432


Q ss_pred             -EEC-------CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         316 -SFQ-------GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       316 -~~~-------~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                       .+.       +..++|+++.   ++++||++++++|++++
T Consensus       389 ~~f~~~~~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l  426 (429)
T 1yiz_A          389 SAFYSEPNKHLGEDFVRYCFF---KKDENLQKAAEILRKWK  426 (429)
T ss_dssp             GGGSCGGGGGGTTTEEEEECC---SCHHHHHHHHHHHHHHS
T ss_pred             hHhCCCcccCCCCCeEEEEec---CCHHHHHHHHHHHHHhc
Confidence             121       1469999764   37999999999998874

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.79  E-value=2.6e-18  Score=164.13  Aligned_cols=256  Identities=13%  Similarity=0.011  Sum_probs=169.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|+++..+|.++...++..|++++.++.+.  ++.+|+++|+++   .      +.+|++++++|++|.+.|   +++|
T Consensus       116 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~------~~~v~i~~p~nptG~~~~~~~l~~l  186 (391)
T 3h14_A          116 DRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---D------LAGLMVASPANPTGTMLDHAAMGAL  186 (391)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---C------CSEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---C------CeEEEECCCCCCCCccCCHHHHHHH
Confidence            4566778899999999999999999999874  357899999877   2      247888899999999977   8999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++|++||+++++|++|+.+.+.......  ......++++.+.+|+++ .+.++|+++.+++ .......    .....
T Consensus       187 ~~~~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~----~~~~~  259 (391)
T 3h14_A          187 IEAAQAQGASFISDEIYHGIEYEAKAVTA--LELTDECYVINSFSKYFSMTGWRVGWMVVPED-QVRVVER----IAQNM  259 (391)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBSSSCCCCG--GGTCSSSEEEEESSSTTCCTTSCCEEEECCGG-GHHHHHH----HHHHT
T ss_pred             HHHHHHcCCEEEEECcchhcccCCCCcCh--hhcCCCEEEEEechhccCCccceeEEEEeCHH-HHHHHHH----HHhhh
Confidence            99999999999999999875542211100  111223677778999996 4566788777432 2221100    00000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                .. ....+....+.+++.  ..+.+++..++..++.++
T Consensus       260 ------------------------------------------~~-~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~  294 (391)
T 3h14_A          260 ------------------------------------------FI-CAPHASQVAALAALD--CDAELQANLDVYKANRKL  294 (391)
T ss_dssp             ------------------------------------------TC-CCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cc-CCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH
Confidence                                                      00 000011122223333  456788888899999999


Q ss_pred             HHHHhcCCCCeEEeCCCCc-eeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE----CCeeEEEEEecCCCCCHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSM-GLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF----QGRPFLRFVVTSPETNQCDVA  338 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~-~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~----~~~~~lRi~~~~~~~~~edid  338 (367)
                      +.+.|+++ ++....++.. ..+.+.++.......++.+.|.++ | +.+.++..    .+..++|+++..   +++|++
T Consensus       295 l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~iRis~~~---~~~~i~  369 (391)
T 3h14_A          295 MLERLPKA-GFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAG-VAVTPGLDFDPERGAGTLRFSYAR---ATADIE  369 (391)
T ss_dssp             HHHHHHHH-TCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHC-EECEEGGGTCTTTGGGEEEEECCS---CHHHHH
T ss_pred             HHHHHHHc-CCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCC-EEEcCchhhCCCCCCCeEEEEecC---CHHHHH
Confidence            99999887 4444333433 445555643223356888888776 7 44544322    235799997643   689999


Q ss_pred             HHHHHHHHHHHHhh
Q psy3048         339 FAWNEISHQSSEMN  352 (367)
Q Consensus       339 ~li~~l~~~~~~~~  352 (367)
                      .++++|++++++..
T Consensus       370 ~~l~~l~~~~~~~~  383 (391)
T 3h14_A          370 EGLDRLEAFMQARG  383 (391)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.79  E-value=8.3e-19  Score=168.21  Aligned_cols=260  Identities=10%  Similarity=-0.017  Sum_probs=166.0

Q ss_pred             EEecCCcchh-HHHHHHhC--CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          33 AYASDQSNSS-VEKSAIIG--DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        33 v~~s~~~H~s-~~~~~~~~--g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +.++...|.. +...+...  |++++.|+.+++...+. +    +.+.      +.+|++++++|++|.+.|+++|.++ 
T Consensus       123 ~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~----i~~~------~~~v~~~~~~nptG~~~~~~~i~~~-  190 (398)
T 2fyf_A          123 LHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q----TDPS------VDVIAWAHNETSTGVAVAVRRPEGS-  190 (398)
T ss_dssp             EEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C----CCTT------CSEEEEESEETTTTEECCCCCCTTC-
T ss_pred             EEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c----ccCC------CCEEEEeCcCCCcceecchHHhhhh-
Confidence            3345555532 22234445  88999999874333332 1    2222      3578888999999999999999998 


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhcc------CCcccccc
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF------TDRVYLKH  183 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~------~~~~yl~~  183 (367)
                        +|+++++|++|+.+....+        +..+|++++++||+++.|.|+|+++.+++ .+.....      ..++|+..
T Consensus       191 --~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~~~l~~~~~~~~~~~~~~~~  259 (398)
T 2fyf_A          191 --DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQKNFASDGGLWLAIMSPA-ALSRIEAIAATGRWVPDFLSL  259 (398)
T ss_dssp             --C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTTSTTCSCSSEEEEEECHH-HHHHHHHHHHTTCCCCGGGCH
T ss_pred             --cCCeEEEEeccccCCcccC--------cccCcEEEEecCcccCCCCceEEEEECHH-HHHHhhcccccCCCCCcEEeh
Confidence              8999999999987654322        11359999999999998877888887543 3322110      00122211


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la  262 (367)
                      +..           ..+           +..          .+...........++.++++.+...| ++++.++..+++
T Consensus       260 ~~~-----------~~~-----------~~~----------~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          260 PIA-----------VEN-----------SLK----------NQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             HHH-----------HHH-----------HTT----------TCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             HHH-----------hhh-----------ccc----------CCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            100           000           000          00000011112345566676666666 899999999999


Q ss_pred             HHHHHHhcCCCCeEEeC-CC--Cce-eEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHH
Q psy3048         263 KKFADLVEKDDRFELVC-PP--SMG-LVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~-~~--~~~-~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edi  337 (367)
                      +++.+.|++++|+++.. +|  ..+ .++|+++. .....++.+.|.++|+. +.+.. ..+..++|+++ ..+++++|+
T Consensus       308 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~-v~~g~~~~~~~~iRis~-~~~~t~e~i  384 (398)
T 2fyf_A          308 QRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD-DVDAGTVAKILRANGIV-DTEPYRKLGRNQLRVAM-FPAVEPDDV  384 (398)
T ss_dssp             HHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT-TSCHHHHHHHHHHTTCB-CCSCCTTTCSSEEEEEC-CTTSCHHHH
T ss_pred             HHHHHHHHHcCCceeccCChhhcCCcEEEEECCC-CCCHHHHHHHHHHCCcE-EecCcccCCCCEEEEEe-cCCCCHHHH
Confidence            99999999988999874 23  355 78888853 22357899999988854 32221 11246899976 568899999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         338 AFAWNEISHQSSE  350 (367)
Q Consensus       338 d~li~~l~~~~~~  350 (367)
                      ++++++|++++++
T Consensus       385 ~~~~~~l~~~l~~  397 (398)
T 2fyf_A          385 SALTECVDWVVER  397 (398)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.79  E-value=9.1e-18  Score=161.46  Aligned_cols=262  Identities=11%  Similarity=0.032  Sum_probs=161.4

Q ss_pred             ceEEEecCCcchhHHH---HHHhCC--cceEEEecCCCCCcCHHHHHHHHHH-HhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSSVEK---SAIIGD--VPVRQLRSDDNGVLRGDALLTAVKE-DLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~---~~~~~g--~~v~~v~~~~~~~~d~~~L~~~l~~-~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .-.|++++.+|.+...   .....|  ..++.++.++++.+|+++|++++++ .+      .+|++++++  .|.+.|++
T Consensus       111 gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~------~~v~~~~~~--~G~~~~l~  182 (417)
T 3n0l_A          111 GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKP------KLIVCGASA--YARVIDFA  182 (417)
T ss_dssp             TCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCC------SEEEECCSS--CCSCCCHH
T ss_pred             CCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCC------eEEEECCcc--cCccCCHH
Confidence            3456677788877544   333334  4455566667788999999999984 33      366666655  39999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|.++|++||+++++|++|+.+....+....   .+..+|+++.++||++.+|.| |+++.+++........    ....
T Consensus       183 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~----~~~~  254 (417)
T 3n0l_A          183 KFREIADEIGAYLFADIAHIAGLVVAGEHPS---PFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINS----AIFP  254 (417)
T ss_dssp             HHHHHHHHHTCEEEEECTTTHHHHHTTSSCC---CTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHH----HHTT
T ss_pred             HHHHHHHHcCCEEEEECccchhhhhcccCCC---ccccceEEEeeCccccCCCCe-eEEEECCHHHHHHHhh----hhCC
Confidence            9999999999999999998765443222111   122459999999999977764 8887764443322110    0000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ...    ..+                                      ......++.+++.....++++++.++..++++
T Consensus       255 ~~~----~~~--------------------------------------~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~  292 (417)
T 3n0l_A          255 GIQ----GGP--------------------------------------LMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQ  292 (417)
T ss_dssp             TTC----SSC--------------------------------------CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             ccc----CCc--------------------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            000    000                                      00112333444554445677888999999999


Q ss_pred             HHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-------CCeeEEEEEec---CCCC
Q psy3048         264 KFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-------QGRPFLRFVVT---SPET  332 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------~~~~~lRi~~~---~~~~  332 (367)
                      ++.+.|++ .|+++..+ ...+.+.+.+.+.......+.+.|.+.|+ .+.+...       .....+|++..   ....
T Consensus       293 ~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~  370 (417)
T 3n0l_A          293 VLANVLMD-RKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGI-TANKNTVPGEIRSPFITSGLRLGTPALTARGF  370 (417)
T ss_dssp             HHHHHHHH-TTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTE-ECEECCCTTCCSCTTTCSEEEEECHHHHHTTC
T ss_pred             HHHHHHHh-CCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCe-EEeccccCCCCcccCCCCeeEecCHHHhhCCC
Confidence            99999988 58887652 34456666664322235677777877784 4432211       12356999652   2235


Q ss_pred             CHHHHHHHHHHHHHHHHHh
Q psy3048         333 NQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~  351 (367)
                      +++|++++++.|++++++.
T Consensus       371 ~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          371 KEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            7899999999999988753

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.79  E-value=3.4e-18  Score=161.87  Aligned_cols=251  Identities=12%  Similarity=0.072  Sum_probs=164.8

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcC-HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLR-GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d-~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~  107 (367)
                      .|++.+.+|.++...++..|++++.++.+.+..++ ++++.+++.+.      +.+|++++++|++|.+.|   +++|++
T Consensus       100 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~------~~~v~i~~p~nptG~~~~~~~l~~i~~  173 (364)
T 1lc5_A          100 RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIAD  173 (364)
T ss_dssp             EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             eEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccCC------CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            56667789999999999999999999986422233 34444444222      246778899999999988   999999


Q ss_pred             HHhhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|++||+++++|++|+.+.+.. +...  ..+....++++.+.||+++.| ..+|++++.+++...........      
T Consensus       174 ~~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~------  245 (364)
T 1lc5_A          174 RCKSLNINLILDEAFIDFIPHETGFIP--ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP------  245 (364)
T ss_dssp             HHHHHTCEEEEECTTGGGSTTCCCSGG--GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT------
T ss_pred             HhhhcCcEEEEECcChhhccCccchhh--HhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCC------
Confidence            9999999999999998754321 1111  011123478899999999744 45788883344433321100000      


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKGLQAYLRKHISLAKK  264 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~~~~~la~~  264 (367)
                               +                               +      ...+...++...+. .+.+++..++..+++++
T Consensus       246 ---------~-------------------------------~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (364)
T 1lc5_A          246 ---------W-------------------------------S------VNALAALAGEVALQDSAWQQATWHWLREEGAR  279 (364)
T ss_dssp             ---------T-------------------------------C------SCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             ---------C-------------------------------C------CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence                     0                               0      01123333333332 24577888888899999


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E--CCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F--QGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.+.|+++||+++. ++..+.+.+.++. .  ..++.+.|.++|+ .+.+.. +  .+..++|+++.    +++|+++++
T Consensus       280 l~~~L~~~~~~~~~-~~~g~~~~~~~~~-~--~~~l~~~l~~~gi-~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~  350 (364)
T 1lc5_A          280 FYQALCQLPLLTVY-PGRANYLLLRCER-E--DIDLQRRLLTQRI-LIRSCANYPGLDSRYYRVAIR----SAAQNERLL  350 (364)
T ss_dssp             HHHHHHTSTTEEEC-CCSSSEEEEEESC-T--TCCHHHHHHTTTE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHH
T ss_pred             HHHHHhcCCCCEEC-CCCCeEEEEECCC-c--HHHHHHHHHHCCc-EEeeCcccCCCCCCEEEEEeC----CHHHHHHHH
Confidence            99999998899875 4555667777753 2  3468888888874 444432 2  12469999753    589999999


Q ss_pred             HHHHHHHHHh
Q psy3048         342 NEISHQSSEM  351 (367)
Q Consensus       342 ~~l~~~~~~~  351 (367)
                      ++|+++++++
T Consensus       351 ~~l~~~~~~~  360 (364)
T 1lc5_A          351 AALRNVLTGI  360 (364)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHhhcc
Confidence            9999987654

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.78  E-value=1.3e-18  Score=167.59  Aligned_cols=263  Identities=11%  Similarity=0.026  Sum_probs=171.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      .-.|++++.+|.++...++..|++++.++.++  ++.+|+++|++++++.+      .+|++++++|++|.+.|   +++
T Consensus       123 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~l~~p~nptG~~~~~~~l~~  196 (412)
T 2x5d_A          123 GDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP------RMMILGFPSNPTAQCVELDFFER  196 (412)
T ss_dssp             TCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC------SEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCc------eEEEECCCCCCCCCcCCHHHHHH
Confidence            34677778899999999999999999999875  34578999998886433      36777899999999865   688


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhh--hhhCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~--~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+.+.+......  ..+.+....|+++.+.||+++. +..+|+++.+ ++....... ...+.
T Consensus       197 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~l~~-~~~~~  274 (412)
T 2x5d_A          197 VVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN-PELVSALAR-IKSYH  274 (412)
T ss_dssp             HHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC-HHHHHHHHH-HHHHH
T ss_pred             HHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC-HHHHHHHHH-HHhhh
Confidence            99999999999999999987654221100  0011112348899999999973 3457998874 333322110 00000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      .                                           ++   ...+....+..++.. +.+.+++..++..++
T Consensus       275 ~-------------------------------------------~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~  307 (412)
T 2x5d_A          275 D-------------------------------------------YG---TFTPLQVAAIAALEG-DQQCVRDIARQYQQR  307 (412)
T ss_dssp             C-------------------------------------------CC---CCHHHHHHHHHHHHS-CSHHHHHHHHHHHHH
T ss_pred             c-------------------------------------------cC---CCHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence            0                                           00   000111222333332 245678888889999


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc--hHHHHHHHHHhc-cCcEEEEEeEE-C--CeeEEEEEecCCCCCHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN--DLTNQLYERLMS-HKQIYIIKASF-Q--GRPFLRFVVTSPETNQC  335 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~--~~~~~l~~~L~~-~g~~~~~~~~~-~--~~~~lRi~~~~~~~~~e  335 (367)
                      ++++.+.|+++ |+++..+.....++++++...  ....++.+.|.+ .|+ .+.++.. .  +..++|+++..   +++
T Consensus       308 ~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi-~v~~g~~f~~~~~~~iRis~~~---~~~  382 (412)
T 2x5d_A          308 RDVLVKGLREA-GWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKV-SVSPGIGFGDYGDDHVRFALIE---NRD  382 (412)
T ss_dssp             HHHHHHHHHHH-TCCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCE-ECEEGGGGCGGGTTEEEEECCS---CHH
T ss_pred             HHHHHHHHHHC-CCEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCE-EEeCchhhCCCCCCeEEEEecC---CHH
Confidence            99999999887 777654332334666764311  035678888865 574 4443321 1  24689997643   799


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy3048         336 DVAFAWNEISHQSSEMN  352 (367)
Q Consensus       336 did~li~~l~~~~~~~~  352 (367)
                      +++.+++.|+++++++.
T Consensus       383 ~l~~~l~~l~~~l~~~~  399 (412)
T 2x5d_A          383 RLRQAVRGIKAMFRADG  399 (412)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999988754

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.78  E-value=8.3e-18  Score=162.65  Aligned_cols=264  Identities=11%  Similarity=-0.002  Sum_probs=170.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      -.|++++.+|.+...++...|++++.+++++ ++.+|+++|++++++.+      .+|+++   +++|.+.|+++|.++|
T Consensus        91 d~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~------~~v~~~---~~tG~~~~l~~i~~la  161 (424)
T 2po3_A           91 GEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRT------SAVVGV---HLWGRPCAADQLRKVA  161 (424)
T ss_dssp             SEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTE------EEEEEE---CGGGCCCCHHHHHHHH
T ss_pred             CEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCC------cEEEEE---CCCCCcCCHHHHHHHH
Confidence            4577788999999999999999999999875 78899999999886543      355555   3799999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc--cccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH--KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h--K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      ++||+++++|++|+.+......  . +.  ...|+++.+.|  |++.+ ..+|+++.++++.......    +...... 
T Consensus       162 ~~~~~~li~Dea~~~g~~~~~~--~-~~--~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~----~~~~~~~-  230 (424)
T 2po3_A          162 DEHGLRLYFDAAHALGCAVDGR--P-AG--SLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRA----LHNFGFD-  230 (424)
T ss_dssp             HHTTCEEEEECTTCTTCEETTE--E-TT--SSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHH----HHBTTTT-
T ss_pred             HHcCCEEEEECccccCCeECCe--e-cc--cccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHH----HHhcCcc-
Confidence            9999999999999843332111  1 11  12377777766  98875 5677777754443332210    0000000 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                         .....                            .  ......++..+....++.  ..++++++.++..++++++.+
T Consensus       231 ---~~~~~----------------------------~--~~g~~~~~~~~~aa~~l~--~~~~~~~~~~~~~~~~~~l~~  275 (424)
T 2po3_A          231 ---LPGGS----------------------------P--AGGTNAKMSEAAAAMGLT--SLDAFPEVIDRNRRNHAAYRE  275 (424)
T ss_dssp             ---CTTCC----------------------------T--TCCCBCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccc----------------------------c--ccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence               00000                            0  000000122233333332  345678888899999999999


Q ss_pred             HhcCCCCeEEeCCC-C----ceeEEEEEcCC--chHHHHHHHHHhccCcEEEEEeEECC---------------ee----
Q psy3048         268 LVEKDDRFELVCPP-S----MGLVCFRLKGD--NDLTNQLYERLMSHKQIYIIKASFQG---------------RP----  321 (367)
Q Consensus       268 ~L~~~~g~~~~~~~-~----~~~v~f~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~---------------~~----  321 (367)
                      .|++++|+++..++ .    ..++.+.++..  .....++.+.|.++|+ .+.+.....               +.    
T Consensus       276 ~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI-~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~  354 (424)
T 2po3_A          276 HLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGV-HTRAYFSPGCHELEPYRGQPHAPLPHTERL  354 (424)
T ss_dssp             HTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTE-ECBCTTCSCGGGSTTTTTSCCCCCHHHHHH
T ss_pred             HhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCC-ceecccCCccccchhhhhcCCCCChhHHHH
Confidence            99999899887632 1    24555666420  1125678888888884 333211000               11    


Q ss_pred             ---EEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         322 ---FLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       322 ---~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                         .+|++ .+.+++++|+++++++|++++++.
T Consensus       355 ~~~~l~l~-~~~~~t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          355 AARVLSLP-TGTAIGDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             HTTEEEEC-CSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCEEEee-CCCCCCHHHHHHHHHHHHHHHhhh
Confidence               27773 468889999999999999887653

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.78  E-value=5.3e-18  Score=162.09  Aligned_cols=271  Identities=12%  Similarity=0.039  Sum_probs=164.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...+++..|++++.++++++ +.+|+++|++++++.+      .+|+++   +++|...|+++|.++
T Consensus        80 g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~~~---~~~g~~~~~~~i~~l  150 (390)
T 3b8x_A           80 GDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDST------KAILTV---NLLGNPNNFDEINKI  150 (390)
T ss_dssp             TCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTE------EEEEEE---CGGGCCCCHHHHHHH
T ss_pred             cCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCC------eEEEEE---CCccChhhHHHHHHH
Confidence            446788899999999999999999999999765 8999999999997644      366665   367999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCC-ccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD-RVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~  186 (367)
                      |++||+++|+|++|+.+......    ..+. ....+++..+.|.+.+|.| |+++.+++.......... ..+......
T Consensus       151 ~~~~~~~li~D~a~~~g~~~~~~----~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~  225 (390)
T 3b8x_A          151 IGGRDIILLEDNCESMGATFNNK----CAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPK  225 (390)
T ss_dssp             HTTSCCEEEEECTTCTTCEETTE----ETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCS
T ss_pred             HHHcCCEEEEECcCcccCEECCc----ccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccc
Confidence            99999999999999865443211    1121 1123344334444555555 777776544322111000 000000000


Q ss_pred             C---C-CCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc--ccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         187 P---M-NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR--FRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       187 ~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      .   . ......+          ..+               ..+.. .+.+  ...+....++..  .+.++++.++..+
T Consensus       226 ~~~~~~~~~~~~~----------~~~---------------~~~~~-~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~  277 (390)
T 3b8x_A          226 KNKVTGVKSDDQF----------EES---------------FKFVL-PGYNVRPLEMSGAIGIEQ--LKKLPRFISVRRK  277 (390)
T ss_dssp             EETTTEECCSCTT----------TSS---------------SCBCS-CCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             ccccccccccccc----------ccc---------------cceec-cccccCcCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            0   0 0000000          000               00000 0101  122333333333  3567888999999


Q ss_pred             HHHHHHHHhcCCCCeEEeCCC-Ccee--EEEEEcCC-chHHHHHHHHHhccCcEEEEE----e---E-E--C-------C
Q psy3048         261 LAKKFADLVEKDDRFELVCPP-SMGL--VCFRLKGD-NDLTNQLYERLMSHKQIYIIK----A---S-F--Q-------G  319 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~-~~~~--v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~----~---~-~--~-------~  319 (367)
                      +++++.+.|++++|+++..++ ..+.  +.+.++.. .....++.+.|.++|+. +..    .   . .  .       .
T Consensus       278 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~-v~~~~~~~~~~~~~~~~~~~~~~~~  356 (390)
T 3b8x_A          278 NAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIE-CRPIVTGNFLKNTDVLKYFDYTVHN  356 (390)
T ss_dssp             HHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBC-CBCSTTSSGGGCHHHHTTCEEEESS
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCC-eeeecCCchhhcchhhhcCCCCCcC
Confidence            999999999999999886543 2332  44455421 12356788888888743 221    0   0 0  0       0


Q ss_pred             ---------eeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         320 ---------RPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       320 ---------~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                               ...+|++ .++++|++||++++++|
T Consensus       357 ~~~~~~~~~~~~l~l~-~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          357 NVDNAEYLDKNGLFVG-NHQIELFDEIDYLREVL  389 (390)
T ss_dssp             CCHHHHHHHHHEEEEE-CCSSCCHHHHHHHHHHT
T ss_pred             CChHHHHHhcCEEEee-CCCCCCHHHHHHHHHhh
Confidence                     1369995 57899999999999886

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.78  E-value=1.9e-18  Score=161.37  Aligned_cols=122  Identities=15%  Similarity=0.065  Sum_probs=97.1

Q ss_pred             eEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++.+|.+....+    ...|++++.++.     .|+++|++++++.+      .+|++++++|++|.+.|+++|.
T Consensus        38 ~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~~~~i~  106 (331)
T 1pff_A           38 DHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----AVPGNIEKHLKPNT------RIVYFETPANPTLKVIDIEDAV  106 (331)
T ss_dssp             CEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----TSTTHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHhhcCCC------eEEEEECCCCCcCcccCHHHHH
Confidence            45777888999987765    347999998876     38889998887544      5888899999999999999999


Q ss_pred             HHHhh-cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhh
Q psy3048         107 PICQE-YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHL  170 (367)
Q Consensus       107 ~l~~~-~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~  170 (367)
                      ++|++ ||+++++|++|+.+.+..+. .   .+   .|+++.++||++++|.+  +|+++.++++..
T Consensus       107 ~~~~~~~~~~li~D~a~~~~~~~~~~-~---~~---~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~  166 (331)
T 1pff_A          107 KQARKQKDILVIVDNTFASPILTNPL-D---LG---VDIVVHSATKYINGHTDVVAGLVCSRADIIA  166 (331)
T ss_dssp             HHHTTSSSCEEEEECTTTHHHHCCGG-G---GT---CSEEEEETTTTTSSSSSCCCEEEEECHHHHH
T ss_pred             HHHhhhcCCEEEEECCCcccccCChh-h---cC---CcEEEEECccccCCCCCceEEEEEeCcHHHH
Confidence            99999 99999999999876553221 1   12   49999999999998876  788877652433

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.78  E-value=4.3e-17  Score=155.64  Aligned_cols=243  Identities=16%  Similarity=0.139  Sum_probs=162.3

Q ss_pred             ceEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      +-.|++++.+|.++...    ++..|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus        91 g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i  159 (386)
T 1cs1_A           91 GDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-----DEQALRAALAEKP------KLVLVESPSNPLLRVVDIAKI  159 (386)
T ss_dssp             TCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHHTCC------SEEEEECSCTTTCCCCCHHHH
T ss_pred             CCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC-----CHHHHHHhhccCC------cEEEEeCCCCCCCcccCHHHH
Confidence            34567778899886654    35678999988864     8999999998654      478889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc--eeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC--SAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      .++|++||+++++|++|+.+.+..+. .   .   ..|+++.+.||++++|.+.  |+++.++++.......    +...
T Consensus       160 ~~l~~~~~~~li~De~~~~~~~~~~~-~---~---~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~----~~~~  228 (386)
T 1cs1_A          160 CHLAREVGAVSVVDNTFLSPALQNPL-A---L---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW----WANN  228 (386)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTTCCGG-G---G---TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH----HHHH
T ss_pred             HHHHHHcCCEEEEECCCcccccCCcc-c---c---CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH----HHHh
Confidence            99999999999999999877653221 1   1   2499999999999988764  8888865333322110    0000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                +.. .   ...+..++++..  .+.+.+..++..+.++
T Consensus       229 ------------------------------------------~~~-~---~~~~~~~~~~~~--l~~~~~~~~~~~~~~~  260 (386)
T 1cs1_A          229 ------------------------------------------IGV-T---GGAFDSYLLLRG--LRTLVPRMELAQRNAQ  260 (386)
T ss_dssp             ------------------------------------------HTC-B---CCHHHHHHHHHH--HTTHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cCC-C---CCHHHHHHHHhc--ccHHHHHHHHHHHHHH
Confidence                                                      000 0   011222322222  2234556666777888


Q ss_pred             HHHHHhcCCCCeEEe-CCC----------------CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--------
Q psy3048         264 KFADLVEKDDRFELV-CPP----------------SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--------  318 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--------  318 (367)
                      ++.+.|++++++.-. .+.                ..+++.|.+.+ .  ...+.+.|.+.|++ +.+....        
T Consensus       261 ~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~gi~-~~~~~~g~~~sl~~~  336 (386)
T 1cs1_A          261 AIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-D--EQTLRRFLGGLSLF-TLAESLGGVESLISH  336 (386)
T ss_dssp             HHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-C--HHHHHHHHHTCSSS-EEBSCCCSSSCEEEE
T ss_pred             HHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-C--HHHHHHHHHhCCcc-eEcccCCCcceeeec
Confidence            888888887766432 221                25778888764 2  45677778777753 3321010        


Q ss_pred             -------------------CeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         319 -------------------GRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       319 -------------------~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                                         ...++|+++. ..+++++++.+.++|+++
T Consensus       337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          337 AATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             GGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHHHHHHHHHh
Confidence                               1369999874 577788888888888765

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.78  E-value=1.2e-17  Score=162.42  Aligned_cols=245  Identities=14%  Similarity=0.087  Sum_probs=163.0

Q ss_pred             eEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+....    +...|+++++++.+     |+++|++++++++     +.+|++.+++|++|.+.|+++|+
T Consensus       154 d~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~  223 (445)
T 1qgn_A          154 GHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVS  223 (445)
T ss_dssp             CEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHH
Confidence            3566677888887664    45579999999874     8999999998765     24888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC--cceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH--DCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||+||+++++|++|+.+....+ .     .. .+|+++.++||+++++.  .+|+++.++ +.+....    .+... 
T Consensus       224 ~la~~~g~~livD~a~~~~~~~~~-~-----~~-g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~----~~~~~-  290 (445)
T 1qgn_A          224 KLCHEKGALVCIDGTFATPLNQKA-L-----AL-GADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIR----NLHHI-  290 (445)
T ss_dssp             HHHHHTTCEEEEECTTTCTTTCCT-T-----TT-TCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHH----HHHHH-
T ss_pred             HHHHHcCCEEEEECCCcccccCCc-c-----cc-CCEEEEECCcccccccccceEEEEEECH-HHHHHHH----HHHHH-
Confidence            999999999999999986543221 1     11 35999999999998542  278877754 3332211    00000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                               +.    .....+..+..++  +.+.+..++++..+.+++
T Consensus       291 -----------------------------------------~g----~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~  323 (445)
T 1qgn_A          291 -----------------------------------------LG----GALNPNAAYLIIR--GMKTLHLRVQQQNSTALR  323 (445)
T ss_dssp             -----------------------------------------HC----CCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------hC----CCCCHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence                                                     00    0001123333333  334456667777888999


Q ss_pred             HHHHhcCCCCe-EEeCCC----------------CceeEEEEEcCCchHHHHHHHHHhccCc------EE---EEEeE--
Q psy3048         265 FADLVEKDDRF-ELVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSHKQ------IY---IIKAS--  316 (367)
Q Consensus       265 l~~~L~~~~g~-~~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~------~~---~~~~~--  316 (367)
                      +.+.|+++|++ .+..|.                ..++++|.+++.......+.+.|...+.      ..   ..+..  
T Consensus       324 l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~  403 (445)
T 1qgn_A          324 MAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMS  403 (445)
T ss_dssp             HHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHH
T ss_pred             HHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccccc
Confidence            99999999988 555441                3578899997632335567776642221      10   00000  


Q ss_pred             ----------EC--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         317 ----------FQ--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       317 ----------~~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                                ..  ..+.+|+|+.     .||+|.+++.|+++++.
T Consensus       404 h~~~~~~~~~~~g~~~~~iRlSvG-----~Edid~li~~L~~al~~  444 (445)
T 1qgn_A          404 YWDLSQSDRAKYGIMDNLVRFSFG-----VEDFDDLKADILQALDS  444 (445)
T ss_dssp             STTSCHHHHHTTTCCSSEEEEECC-----SSCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHHHhh
Confidence                      01  1469999764     46899999999998764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.78  E-value=1.3e-17  Score=159.96  Aligned_cols=244  Identities=14%  Similarity=0.105  Sum_probs=160.3

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..|.+....+    ...|++++.++.+     |+++|++++++.+      .+|++.+++|++|.+.|+++|
T Consensus       105 gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i  173 (392)
T 3qhx_A          105 GDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIRPTT------RLIWVETPTNPLLSIADIAGI  173 (392)
T ss_dssp             TCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             CCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhCCCC------eEEEEECCCCCCcEEecHHHH
Confidence            346777888998877665    5578999999875     8999999997655      488899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++|++||+++|+|++|+.+... ....   .   .+|+++.+.||+++++.+  +|+++.+++........    +...
T Consensus       174 ~~la~~~g~~li~D~~~~~~~~~-~~~~---~---~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~----~~~~  242 (392)
T 3qhx_A          174 AQLGADSSAKVLVDNTFASPALQ-QPLS---L---GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF----LQNG  242 (392)
T ss_dssp             HHHHHHHTCEEEEECTTTCTTTC-CGGG---G---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH----HHHH
T ss_pred             HHHHHHcCCEEEEECCCcccccC-ChHH---h---CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH----HHHh
Confidence            99999999999999999865332 2111   1   349999999999987643  77777765443322110    0000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                +.    .....+..+..++.  .+.+..++++..++++
T Consensus       243 ------------------------------------------~g----~~~~~~~~~~~~~~--l~~l~~~~~~~~~~~~  274 (392)
T 3qhx_A          243 ------------------------------------------AG----AVPGPFDAYLTMRG--LKTLVLRMQRHSENAA  274 (392)
T ss_dssp             ------------------------------------------HC----CCCCHHHHHHHHHH--HTTHHHHHHHHHHHHH
T ss_pred             ------------------------------------------cC----CCCCHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence                                                      00    00112333443332  3345667788889999


Q ss_pred             HHHHHhcCCCCeEEeCCCC-----------------ceeEEEEEcCCchHHHHHHHHHhccCcEE---------EEEeEE
Q psy3048         264 KFADLVEKDDRFELVCPPS-----------------MGLVCFRLKGDNDLTNQLYERLMSHKQIY---------IIKASF  317 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~-----------------~~~v~f~~~~~~~~~~~l~~~L~~~g~~~---------~~~~~~  317 (367)
                      ++.+.|+++|++.-+..|.                 .++++|.+++.....+.+.+.|...+...         +.+...
T Consensus       275 ~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~  354 (392)
T 3qhx_A          275 AVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAM  354 (392)
T ss_dssp             HHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGT
T ss_pred             HHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcccc
Confidence            9999999998875442221                 45788998763344567777776544110         111000


Q ss_pred             -----------CCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         318 -----------QGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       318 -----------~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                                 ..+..+|+|+ ...+++++|+.+.++|
T Consensus       355 ~~~~~~~~~~g~~~~~iRlSv-g~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          355 THASTAGSQLEVPDDLVRLSV-GIEDVADLLDDLKQAL  391 (392)
T ss_dssp             SCGGGBTTBCCCCTTEEEEEC-CSSCHHHHHHHHHHHH
T ss_pred             cccccCHHHcCCCCCeEEEEe-ccCCHHHHHHHHHHHh
Confidence                       1245899977 4555566666655554

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.78  E-value=8.8e-18  Score=161.59  Aligned_cols=263  Identities=11%  Similarity=0.051  Sum_probs=162.5

Q ss_pred             ceEEEecCCcchhHH---HHHHhCCc--ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVE---KSAIIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~---~~~~~~g~--~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .-.|++++..|.+..   ......|.  .++.++.++++.+|+++|++++++..     +.+|+++.+++  |...|+++
T Consensus       116 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~~  188 (420)
T 3gbx_A          116 GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK-----PKMIIGGFSAY--SGVVDWAK  188 (420)
T ss_dssp             TCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC-----CSEEEECCTTC--CSCCCHHH
T ss_pred             CCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC-----CeEEEEecCcc--CCccCHHH
Confidence            345666777887743   22223344  44455667778999999999998752     24677766554  56889999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecc--hhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNA--NHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~--~~~~~~~~~~~~yl~  182 (367)
                      |.++|++||+++++|++|+.+....+....   .+..+|+++.++||++++|.| |+++.++.  .......    .+..
T Consensus       189 l~~l~~~~~~~li~De~~~~~~~~~~~~~~---~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~----~~~~  260 (420)
T 3gbx_A          189 MREIADSIGAYLFVDMAHVAGLIAAGVYPN---PVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLN----SAVF  260 (420)
T ss_dssp             HHHHHHHTTCEEEEECTTTHHHHHTTSSCC---STTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHH----HHHC
T ss_pred             HHHHHHHcCCEEEEECCcchhceecccCCc---ccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhh----hhcC
Confidence            999999999999999998765442221111   123469999999999987775 77776541  2222110    0010


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....                                          .........++..++.....++++++.++..+++
T Consensus       261 ~~~~------------------------------------------~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~  298 (420)
T 3gbx_A          261 PSAQ------------------------------------------GGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNA  298 (420)
T ss_dssp             ----------------------------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             CCCC------------------------------------------CCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            1000                                          0000011233344454444567788899999999


Q ss_pred             HHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-------eEECCeeEEEEEecC---CC
Q psy3048         263 KKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-------ASFQGRPFLRFVVTS---PE  331 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-------~~~~~~~~lRi~~~~---~~  331 (367)
                      +++.+.|++ .|++++.+ +..+.+.+.+.........+.+.|.++|+ .+.+       ....+...+|+++..   ..
T Consensus       299 ~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~  376 (420)
T 3gbx_A          299 KAMVEVFLN-RGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANI-TVNKNSVPNDPKSPFVTSGIRIGSPAVTRRG  376 (420)
T ss_dssp             HHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTE-ECEEECCTTCSSCTTTCSEEEEECHHHHHTT
T ss_pred             HHHHHHHHh-cCCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCc-EeccccCCCCccccCCCcceEEecchhcccC
Confidence            999999988 48888754 35566666664322234567777877785 4443       111233469997632   22


Q ss_pred             CCHHHHHHHHHHHHHHHHHh
Q psy3048         332 TNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~  351 (367)
                      .+++|++++++.|++++++.
T Consensus       377 ~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          377 FKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhCc
Confidence            46899999999999987653

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.78  E-value=2.5e-18  Score=165.85  Aligned_cols=262  Identities=9%  Similarity=0.006  Sum_probs=173.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC------------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD------------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~------------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      .-.|++++.+|.++...+...|.+++.++.+.            ++.+|+++|++++++.+      .+|++++++|++|
T Consensus       115 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~nptG  188 (422)
T 3fvs_A          115 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRT------KALVLNTPNNPLG  188 (422)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTE------EEEEEESSCTTTC
T ss_pred             CCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCc------eEEEECCCCCCCC
Confidence            34566778899999999999999999999864            45799999999987544      4788889999999


Q ss_pred             ccC---ChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhh
Q psy3048          98 AFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLT  171 (367)
Q Consensus        98 ~i~---dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~  171 (367)
                      .+.   ++++|+++|++||+++++|++|+.+.+.......  .+.+....+++..+.+|.++ .+.++|+++.++ ..+.
T Consensus       189 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~  267 (422)
T 3fvs_A          189 KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD-HIMK  267 (422)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH-HHHH
T ss_pred             cCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCH-HHHH
Confidence            997   6999999999999999999999875442211000  01111123577888999997 346688887743 2222


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH------
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS------  245 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  245 (367)
                      ....    .....         .                               ++   ...+....+..++..      
T Consensus       268 ~~~~----~~~~~---------~-------------------------------~~---~~~~~~~a~~~~l~~~~~~~~  300 (422)
T 3fvs_A          268 HLRT----VHQNS---------V-------------------------------FH---CPTQSQAAVAESFEREQLLFR  300 (422)
T ss_dssp             HHHH----HHHTT---------T-------------------------------CC---CCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHH----HHhhc---------c-------------------------------CC---CCcHHHHHHHHHHhhcccccc
Confidence            1100    00000         0                               00   000112233333332      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCch------------HHHHHHHHHhc-cCcEEE
Q psy3048         246 YGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDND------------LTNQLYERLMS-HKQIYI  312 (367)
Q Consensus       246 ~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~------------~~~~l~~~L~~-~g~~~~  312 (367)
                      ...+.+++..++..++++++.+.|+++ |+++..+.....+++.+.....            ...++.+.+.+ .| +++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-v~v  378 (422)
T 3fvs_A          301 QPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKG-LVA  378 (422)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHC-EEC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcC-EEE
Confidence            124567888889999999999999998 8887766555555665532000            03467777655 46 444


Q ss_pred             EEeE-E-------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         313 IKAS-F-------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       313 ~~~~-~-------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .++. +       .+.+++|+++..   ++++++.++++|++++++
T Consensus       379 ~~g~~f~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          379 IPVSIFYSVPHQKHFDHYIRFCFVK---DEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             EEGGGGSCHHHHTTSCSEEEEECCC---CHHHHHHHHHHHHHHHHC
T ss_pred             eCcHHhcCCcCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHhh
Confidence            4432 2       246799997643   899999999999998764

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.77  E-value=3.1e-17  Score=157.89  Aligned_cols=245  Identities=13%  Similarity=0.109  Sum_probs=161.3

Q ss_pred             eEEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+...    .++..|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|+
T Consensus       102 d~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~t------~~v~l~~p~NptG~v~~l~~i~  170 (404)
T 1e5e_A          102 DHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNT------KIVYFETPANPTLKIIDMERVC  170 (404)
T ss_dssp             CEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCC------cEEEEECCCCCCCcccCHHHHH
Confidence            456778889999888    677789999999875     8899999987654      5888999999999999999999


Q ss_pred             HHHhh-cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQE-YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~-~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++ ||+++++|++|+.+.+..+ ..   .   .+|+++.++||++++|.+  +|+++.+++ .+.+.+.....+.. 
T Consensus       171 ~la~~~~~~~li~De~~~~~~~~~~-~~---~---~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~-  241 (404)
T 1e5e_A          171 KDAHSQEGVLVIADNTFCSPMITNP-VD---F---GVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDIT-  241 (404)
T ss_dssp             HHHHTSTTCEEEEECTTTCTTTCCG-GG---G---TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCC-
T ss_pred             HHHHhhcCCEEEEECCCchhhhCCc-cc---c---CCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCC-
Confidence            99999 9999999999987654322 11   1   249999999999998866  688887543 33311111000000 


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                 ...    ...+..++++..+.  .+..+.++..++++
T Consensus       242 -------------------------------------------g~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~  272 (404)
T 1e5e_A          242 -------------------------------------------GSV----ISPHDAWLITRGLS--TLNIRMKAESENAM  272 (404)
T ss_dssp             -------------------------------------------CCC----CCHHHHHHHHHHHT--THHHHHHHHHHHHH
T ss_pred             -------------------------------------------CCC----CCHHHHHHHHHhHh--HHHHHHHHHHHHHH
Confidence                                                       000    01233343333332  23445556667777


Q ss_pred             HHHHHhcCCCCeE-EeCC------------C----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------
Q psy3048         264 KFADLVEKDDRFE-LVCP------------P----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------  317 (367)
Q Consensus       264 ~l~~~L~~~~g~~-~~~~------------~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------  317 (367)
                      ++.+.|++.+.+. ++.+            +    ..+++.|.+++ .  ..++.+.|.+.|. +.....+         
T Consensus       273 ~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~  348 (404)
T 1e5e_A          273 KVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-G--FEGAKKLLDNLKL-ITLAVSLGGCESLIQH  348 (404)
T ss_dssp             HHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-H--HHHHHHHHHTCSS-SEESSCCCSSSCEEEC
T ss_pred             HHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-C--HHHHHHHHHhCCC-ceeccCCCCcceeeec
Confidence            7777776665443 2221            1    26778888764 1  2344455555564 2222111         


Q ss_pred             ----------------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         318 ----------------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       318 ----------------~~--~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                                      .|  ++++|+++..     ||++.+++.|+++++.+.+
T Consensus       349 ~~~~~~~~~~~~~~~~~g~~~~~iRis~g~-----e~~~~li~~l~~al~~~~~  397 (404)
T 1e5e_A          349 PASMTHAVVPKEEREAAGITDGMIRLSVGI-----EDADELIADFKQGLDALLR  397 (404)
T ss_dssp             GGGTTTTTSCHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccCCHHHHHhcCCCCCeEEEEeCC-----CCHHHHHHHHHHHHHHHHH
Confidence                            12  4699997643     7899999999999887654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.77  E-value=7.5e-18  Score=158.87  Aligned_cols=251  Identities=12%  Similarity=0.046  Sum_probs=161.4

Q ss_pred             EEEecCCcchhHHH---HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-cccC---Chhh
Q psy3048          32 VAYASDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAFD---NLEE  104 (367)
Q Consensus        32 ~v~~s~~~H~s~~~---~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i~---dl~~  104 (367)
                      +|+++...|++...   .+...|++++.++. +++.+|+++|+++.  .+      .+|+++.++|++ |.+.   ++++
T Consensus        90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~--~~------~~v~~~~p~np~~G~~~~~~~l~~  160 (357)
T 3lws_A           90 TVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP--DI------ACLLLELPQREIGGVAPAFSELET  160 (357)
T ss_dssp             EEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC--SC------SEEEEESSBGGGTSBCCCHHHHHH
T ss_pred             EEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc--Cc------ceEEEEcccccCCceeCCHHHHHH
Confidence            77888889888765   34567899988885 56789999999872  13      478889999888 8876   4899


Q ss_pred             HHHHHhhcCcEEEEecccccccc--cChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~--~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |+++|++||+++|+|++|.....  .........   ..+|.++.++||++++|.| |+++. +++.+....... ....
T Consensus       161 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~~~-~~~~~~~~~~~~-~~~~  234 (357)
T 3lws_A          161 ISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYKGLGGIAG-AILAG-PAAFCQTARIWK-RRYG  234 (357)
T ss_dssp             HHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSSTTCCSSC-EEEEE-CHHHHHHHHHHH-HHTT
T ss_pred             HHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccccCCCCce-EEEEc-CHHHHHHHHHHH-HHhc
Confidence            99999999999999999862111  111111111   2358889999999988877 66655 444333221000 0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...                                      .  .   .. ..+.....+++.     ..+..++..+++
T Consensus       235 ~~~--------------------------------------~--~---~~-~~~~~~~~~l~~-----~~~~~~~~~~~~  265 (357)
T 3lws_A          235 GDL--------------------------------------I--S---LY-PYIVSADYYYEL-----RKDRMGQYYEQA  265 (357)
T ss_dssp             CCC--------------------------------------S--C---CH-HHHHHHHHHHHH-----HTTCHHHHHHHH
T ss_pred             CCc--------------------------------------c--c---ch-HHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence            000                                      0  0   00 001111122322     223344567788


Q ss_pred             HHHHHHhcCCCCeEEe-CCCCceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEe-EE-CCeeEEEEEecCCC--CCHHH
Q psy3048         263 KKFADLVEKDDRFELV-CPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKA-SF-QGRPFLRFVVTSPE--TNQCD  336 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~-~~-~~~~~lRi~~~~~~--~~~ed  336 (367)
                      +++.+.|++++|+++. .++..+.+.++++... ....++.+.|.++|+. +.+. .. .+..++|+++...+  .++++
T Consensus       266 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~g~~~~~~~~~~r~~i~~~~~~~~~~~  344 (357)
T 3lws_A          266 KQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLG-FVGYLVDKDGYCSTEISVGDAYGELDQQT  344 (357)
T ss_dssp             HHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEE-SCSCCEECSSEEEEEEEBCTTGGGSCHHH
T ss_pred             HHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeE-EecccccCCCceEEEEEecchhhhcCHHH
Confidence            9999999999999985 5677888888886532 2256788889888854 3322 11 35669999775332  56888


Q ss_pred             HHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQ  347 (367)
Q Consensus       337 id~li~~l~~~  347 (367)
                      ++..++.|.+.
T Consensus       345 l~~al~~l~~a  355 (357)
T 3lws_A          345 RDAGFARLRQA  355 (357)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888888765

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.77  E-value=1.5e-17  Score=155.29  Aligned_cols=244  Identities=11%  Similarity=0.048  Sum_probs=166.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .-.|++++.+|.++...++..|++++.++.++++.+|+++|+++  ..      +.++++++++|++|.+.|+++|.++|
T Consensus        90 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~--~~------~~~v~i~~p~nptG~~~~~~~l~~l~  161 (337)
T 3p1t_A           90 SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV--SR------DDCVVLANPSNPTGQALSAGELDQLR  161 (337)
T ss_dssp             TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC--CT------TEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh--cC------CCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence            34677788999999999999999999999988899999999876  22      35889999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +++++ +++|++|+.+...... .   ......++++.+.+|+++ .+.++|+++... .........        ..  
T Consensus       162 ~~~~~-~ivDea~~~~~~~~~~-~---~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~l~~~--------~~--  225 (337)
T 3p1t_A          162 QRAGK-LLIDETYVDYSSFRAR-G---LAYGENELVFRSFSKSYGLAGLRLGALFGPS-ELIAAMKRK--------QW--  225 (337)
T ss_dssp             HHCSE-EEEECTTGGGSSCSSS-C---CCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HHHHHHHTT--------SC--
T ss_pred             HhCCc-EEEECCChhhcccccc-c---cccCCCEEEEeeCchhccCcchheEEEEeCH-HHHHHHHhh--------cC--
Confidence            99997 6669999754322110 0   112234788999999996 456678877643 333221110        00  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                           .+                               +   ...+....+..+++.  .+.+++..++..+.++++.+.
T Consensus       226 -----~~-------------------------------~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~  264 (337)
T 3p1t_A          226 -----FC-------------------------------N---VGTLDLHALEAALDN--DRAREAHIAKTLAQRRRVADA  264 (337)
T ss_dssp             -----TT-------------------------------C---SCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CC-------------------------------C---CCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence                 00                               0   000111222222221  234667777888888999999


Q ss_pred             hcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       269 L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      |+++ |+++. ++..+.+.+....    ..++.+.|.++|+ .+.++. +...+++|+++.    +++|+++++++|+++
T Consensus       265 L~~~-g~~~~-~~~~~~~~~~~~~----~~~~~~~l~~~gi-~v~~g~~~~~~~~iRis~~----~~~~~~~l~~al~~~  333 (337)
T 3p1t_A          265 LRGL-GYRVA-SSEANFVLVENAA----GERTLRFLRERGI-QVKDAGQFGLHHHIRISIG----REEDNDRLLAALAEY  333 (337)
T ss_dssp             HHHT-TCCBC-CCSSSEEEEECTT----THHHHHHHHHTTE-ECEEGGGGTCCSEEEEECC----CHHHHHHHHHHHHHH
T ss_pred             HHHC-cCEEC-CCCCeEEEEEcCC----HHHHHHHHHHCCe-EEEECccCCCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence            9887 77654 4455666666543    3467777888884 444332 233569999764    699999999999987


Q ss_pred             HH
Q psy3048         348 SS  349 (367)
Q Consensus       348 ~~  349 (367)
                      .+
T Consensus       334 ~~  335 (337)
T 3p1t_A          334 SD  335 (337)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.77  E-value=4.6e-17  Score=157.50  Aligned_cols=267  Identities=12%  Similarity=0.098  Sum_probs=168.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHh------hCCCccEEEE-EecCCCcccccCCh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL------AKGLIPCCLV-ATLGTTGTCAFDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~------~~~~~~~~vv-~~~~~t~~G~i~dl  102 (367)
                      .-.|++.+.+|.++...++..|++++.++.+++ .+|+++|+++++...      .....+.+|+ ..+++|++|.+.|.
T Consensus       132 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~  210 (425)
T 2r2n_A          132 GDNVLLDEPAYSGTLQSLHPLGCNIINVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTS  210 (425)
T ss_dssp             TCEEEEESSCCHHHHHHHGGGTCEEEEECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCH
Confidence            346777788999999999999999999998655 489999999986311      0001133554 46889999999776


Q ss_pred             h---hHHHHHhhcCcEEEEecccccccccCh---hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccC
Q psy3048         103 E---ELGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT  176 (367)
Q Consensus       103 ~---~I~~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~  176 (367)
                      +   +|+++|++||+++++|++|+.+.+...   .... + +....++++.+.+|+++.+..+|+++.++. ....... 
T Consensus       211 ~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~-~-~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~-l~~~l~~-  286 (425)
T 2r2n_A          211 ERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLS-M-DVDGRVIRADSFSKIISSGLRIGFLTGPKP-LIERVIL-  286 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGG-G-CTTSCEEEEEESTTTTCSTTCCEEEEEEHH-HHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccc-c-CCCCCEEEEccchhhccCccceEEEecCHH-HHHHHHH-
Confidence            5   999999999999999999986544221   1110 1 111235778899999973344799888542 2222110 


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH----HHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL----KGLQ  252 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~g~~  252 (367)
                         .....                                        .++   ...+....+..++...+.    +.++
T Consensus       287 ---~~~~~----------------------------------------~~~---~~~~~q~a~~~~l~~~~~~~~~~~~~  320 (425)
T 2r2n_A          287 ---HIQVS----------------------------------------TLH---PSTFNQLMISQLLHEWGEEGFMAHVD  320 (425)
T ss_dssp             ---HHHTT----------------------------------------TCS---SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHh----------------------------------------cCC---CCHHHHHHHHHHHHhcccchHHHHHH
Confidence               00000                                        000   011112233344443322    3456


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CCCeE-EeCCCCceeEEEEEcCCchHHHH-HHHHHhccCcEEEEEeE-EC-----CeeEE
Q psy3048         253 AYLRKHISLAKKFADLVEK-DDRFE-LVCPPSMGLVCFRLKGDNDLTNQ-LYERLMSHKQIYIIKAS-FQ-----GRPFL  323 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~-~~g~~-~~~~~~~~~v~f~~~~~~~~~~~-l~~~L~~~g~~~~~~~~-~~-----~~~~l  323 (367)
                      +..++..+..+++.+.|++ ++|+. +..+.....++++++.. ....+ +.+.|.++|+. +.++. +.     +..++
T Consensus       321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-~~~~~~~~~~l~~~gv~-v~pg~~f~~~~~~~~~~i  398 (425)
T 2r2n_A          321 RVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-NDVKELIEEKAVKMGVL-MLPGNAFYVDSSAPSPYL  398 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-SCCHHHHHTHHHHTTEE-CEEGGGGSSSTTSCCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-CCHHHHHHHHHHHCCcE-EechhhhcCCCCCCCCEE
Confidence            6667777888888888887 57764 44444555667777642 12334 57778878854 44432 21     24699


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      |++++  ..+++++++++++|++++++.
T Consensus       399 Ris~~--~~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          399 RASFS--SASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EEECS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC--CCCHHHHHHHHHHHHHHHHHh
Confidence            99764  248999999999999988754

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.77  E-value=3.4e-17  Score=157.76  Aligned_cols=263  Identities=11%  Similarity=0.028  Sum_probs=159.5

Q ss_pred             ceEEEecCCcchh-HHHHHH--hCCcc--eEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          30 RLVAYASDQSNSS-VEKSAI--IGDVP--VRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s-~~~~~~--~~g~~--v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .-.|++++.+|.+ ....+.  ..|..  ++.++.+ +++.+|+++|++++++..     +.+|+++++++  |...+++
T Consensus       118 gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~~~~--~~~~~l~  190 (425)
T 3ecd_A          118 GDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK-----PSLIIAGFSAY--PRKLDFA  190 (425)
T ss_dssp             TCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEEECSCC--CSCCCHH
T ss_pred             CCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC-----CcEEEEccccC--CCcCCHH
Confidence            4467777888887 223322  44554  4455554 458999999999997432     23666665544  7889999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|.++|++||+++++|++|+.+.+..+....   .+..+|+++.++||++.+|. .|+++.+++.......    .....
T Consensus       191 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~----~~~~~  262 (425)
T 3ecd_A          191 RFRAIADSVGAKLMVDMAHIAGVIAAGRHAN---PVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKIN----SAVFP  262 (425)
T ss_dssp             HHHHHHHHHTCEEEEECGGGHHHHHTTSSCC---GGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHH----HHHC-
T ss_pred             HHHHHHHHcCCEEEEECcChHhhhhcccccC---chhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHH----hhhCc
Confidence            9999999999999999998766543322111   12235999999999997664 5777776443322110    00101


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ...    ..                                      .......++.+++.....++++++.++..++++
T Consensus       263 ~~~----~~--------------------------------------~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~  300 (425)
T 3ecd_A          263 GLQ----GG--------------------------------------PLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQ  300 (425)
T ss_dssp             --------C--------------------------------------CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             ccc----CC--------------------------------------ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            000    00                                      000112334444544455678889999999999


Q ss_pred             HHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-------CCeeEEEEEe---cCCCC
Q psy3048         264 KFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-------QGRPFLRFVV---TSPET  332 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------~~~~~lRi~~---~~~~~  332 (367)
                      ++.+.|++. |+++..+ ...+.+.+.+.+.......+.+.|.++|+. +.+...       .....+|+++   +....
T Consensus       301 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~  378 (425)
T 3ecd_A          301 ALGDVLKAG-GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGIT-CNKNGIPFDPEKPTITSGIRLGTPAGTTRGF  378 (425)
T ss_dssp             HHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEE-CEECCCTTCSSCTTTCSEEEEESHHHHHTTC
T ss_pred             HHHHHHHhC-CCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCE-ecccccCCCCCCCCCccceeccchhheeccC
Confidence            999999885 8888754 355666776653222345777788777843 432111       1234799963   22344


Q ss_pred             CHHHHHHHHHHHHHHHHHh
Q psy3048         333 NQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~  351 (367)
                      +++|++++++.|++++++.
T Consensus       379 ~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          379 GAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcc
Confidence            5999999999999998876

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.77  E-value=1.1e-18  Score=165.59  Aligned_cols=257  Identities=10%  Similarity=0.038  Sum_probs=163.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCC-CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      .-.|+++..+|.+...++...|+++++++.+++ +.+|+++|++++++++      .+|+   +++++|...|+++|.++
T Consensus        75 gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~------~~v~---~~~~~G~~~~~~~i~~l  145 (367)
T 3nyt_A           75 GDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRT------KAII---PVSLYGQCADFDAINAI  145 (367)
T ss_dssp             TCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTE------EEEC---CBCGGGCCCCHHHHHHH
T ss_pred             cCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCC------cEEE---eeCCccChhhHHHHHHH
Confidence            446788889999999999999999999999754 8999999999986544      3444   66789999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeec--cccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFN--AHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~--~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|++|+.+.......    .+. ..|+++++  +||+++++...|+++.+++..........    ..+..
T Consensus       146 a~~~~~~li~D~a~~~g~~~~~~~----~~~-~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~----~~g~~  216 (367)
T 3nyt_A          146 ASKYGIPVIEDAAQSFGASYKGKR----SCN-LSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIA----RHGQD  216 (367)
T ss_dssp             HHHTTCCBEEECTTTTTCEETTEE----TTS-SSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHT----BTTEE
T ss_pred             HHHcCCEEEEECccccCCeECCee----ccC-CCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHH----hcCCC
Confidence            999999999999998654422111    111 12777777  69999864446666665554332221100    00000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                            ..|                            .........+...+...+++  ...+.+++..++.+++++++.
T Consensus       217 ------~~~----------------------------~~~~~g~~~~~~~~~aa~~~--~~l~~~~~~~~~~~~~~~~~~  260 (367)
T 3nyt_A          217 ------RRY----------------------------HHIRVGVNSRLDTLQAAILL--PKLEIFEEEIALRQKVAAEYD  260 (367)
T ss_dssp             ------ETT----------------------------EECSCCCBCCCCHHHHHHHH--HHHHTHHHHHHHHHHHHHHHH
T ss_pred             ------cCc----------------------------eeeccCcCCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence                  000                            00000000011122222222  234456778888999999999


Q ss_pred             HHhcCCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------C------------Ce
Q psy3048         267 DLVEKDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------Q------------GR  320 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~------------~~  320 (367)
                      +.|+++ ++.+...+     ....+.+..+    ..+++.+.|.++|+. +.....         .            ..
T Consensus       261 ~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~GI~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (367)
T 3nyt_A          261 LSLKQV-GIGTPFIEVNNISVYAQYTVRMD----NRESVQASLKAAGVP-TAVHYPIPLNKQPAVADEKAKLPVGDKAAT  334 (367)
T ss_dssp             HHHHHT-TCCCCCCCTTEECCCSSEEEECS----SHHHHHHHHHHHTCC-CBCSCSSCGGGSGGGCCTTCCCHHHHHHHH
T ss_pred             HHhccC-CeeccCCCCCCceeeEEEEEEeC----CHHHHHHHHHHCCCc-eeccCCCccccChhhhccCCCChHHHHHHh
Confidence            999987 55543321     1223344433    256788888888853 221110         0            13


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ..+|+ +.++.+|++||+++++.|++.
T Consensus       335 ~~l~l-p~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          335 QVMSL-PMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HEEEE-CCCTTCCHHHHHHHHHHHHC-
T ss_pred             CeEEc-cCCCCCCHHHHHHHHHHHHHH
Confidence            47899 568899999999999999765

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.77  E-value=1.6e-17  Score=159.39  Aligned_cols=119  Identities=13%  Similarity=0.118  Sum_probs=97.6

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..|.++...+    ...|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus       103 gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i  171 (398)
T 2rfv_A          103 GDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPET------KVVYIETPANPTLSLVDIETV  171 (398)
T ss_dssp             TCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTE------EEEEEESSBTTTTBCCCHHHH
T ss_pred             CCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHH
Confidence            346777889999988876    6789999999875     8999999987644      588889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEec
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKN  166 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~  166 (367)
                      .++|++||+++++|++|+.+.+..+ ..   .+   +|+++.++||++++|.+  +|+++.++
T Consensus       172 ~~l~~~~~~~li~De~~~~~~~~~~-~~---~~---~di~~~s~sK~~~~~g~~~~G~~~~~~  227 (398)
T 2rfv_A          172 AGIAHQQGALLVVDNTFMSPYCQQP-LQ---LG---ADIVVHSVTKYINGHGDVIGGIIVGKQ  227 (398)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTTCCG-GG---GT---CSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred             HHHHHHcCCEEEEECCCcccccCCc-hh---hC---CcEEEEeCcccccCCCCceEEEEEECH
Confidence            9999999999999999987655322 11   12   49999999999988866  58887754

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.76  E-value=1.8e-17  Score=163.83  Aligned_cols=271  Identities=11%  Similarity=0.025  Sum_probs=170.6

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLE  103 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~  103 (367)
                      +.-.|++++.+|.++..+++..|++++.+++++  ++.+|+++|++++++..+++..+.+|++++++|+||.+-   +++
T Consensus       181 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~  260 (500)
T 3tcm_A          181 EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQY  260 (500)
T ss_dssp             TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHH
Confidence            455788889999999999999999999999864  469999999999998655544567888889999999994   577


Q ss_pred             hHHHHHhhcCcEEEEecccccccccCh----hhhhhhCCC----CCcc-eeeeccccccccC--CcceeEEEe--cchhh
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLP----EYAHLKRGL----EYVD-SFAFNAHKWLLTN--HDCSAMWVK--NANHL  170 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~----~~~~~~~~~----~~~D-~~~~~~hK~l~~p--~g~g~l~~~--~~~~~  170 (367)
                      +|+++|++||+++++|++|+.+.+..+    .+......+    .... ++..+.+|.+.++  ..+|+++..  +++..
T Consensus       261 ~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~  340 (500)
T 3tcm_A          261 DIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR  340 (500)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred             HHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence            777789999999999999987555221    111000111    1122 4455889998433  456777763  33333


Q ss_pred             hhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH-----
Q psy3048         171 TNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS-----  245 (367)
Q Consensus       171 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  245 (367)
                      .........+.          .                                      +.......+..++..     
T Consensus       341 ~~l~~~~~~~~----------~--------------------------------------~~~~~q~~~~~~l~~~~~~~  372 (500)
T 3tcm_A          341 EQIYKIASVNL----------C--------------------------------------SNITGQILASLVMNPPKASD  372 (500)
T ss_dssp             HHHHHHHHTTC----------C--------------------------------------CCHHHHHHHHHHHSCCCSSS
T ss_pred             HHHHHHHhccc----------C--------------------------------------CCHHHHHHHHHHhcCccccc
Confidence            22110000000          0                                      000011111112210     


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCCch-----------HHHHHH-HHHhccC
Q psy3048         246 ----YGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCF-RLKGDND-----------LTNQLY-ERLMSHK  308 (367)
Q Consensus       246 ----~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~~-----------~~~~l~-~~L~~~g  308 (367)
                          ...+..+++.++..++++++.+.|++++|+++..+ +.+++.| ++.....           ....++ +.|.+.|
T Consensus       373 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~g  451 (500)
T 3tcm_A          373 ESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEA-EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTG  451 (500)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC-CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecC-CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCC
Confidence                01233566677788999999999999999987654 3444333 3332111           012223 4455567


Q ss_pred             cEEEEEeEE----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         309 QIYIIKASF----QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       309 ~~~~~~~~~----~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      + ++.++..    .+..++|+++.   ++++++++++++|+++++++.
T Consensus       452 I-~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~i~~l~~~~~~~~  495 (500)
T 3tcm_A          452 I-VVVPGSGFGQVPGTWHFRCTIL---PQEDKIPAVISRFTVFHEAFM  495 (500)
T ss_dssp             E-ECEESTTTCCCTTCCBEEEESC---SCTTTHHHHHHHHHHHHHHHH
T ss_pred             E-EEEeCcccCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHH
Confidence            4 4444321    34568999764   578999999999999988764

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.76  E-value=3.8e-17  Score=156.81  Aligned_cols=245  Identities=15%  Similarity=0.110  Sum_probs=157.2

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..|.+....+    ...|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus       104 gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i  172 (398)
T 1gc0_A          104 GDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPAT------RVIYFESPANPNMHMADIAGV  172 (398)
T ss_dssp             TCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             CCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCCCCcccccHHHH
Confidence            346777888999987775    5578999988764     8999999987644      588889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      .++|++||+++++|++|+.+.+..+. .   .   .+|+++.++||++++|.+  .|+++.+++ .+...+.....++..
T Consensus       173 ~~l~~~~~~~li~D~~~~~~~~~~~~-~---~---~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~  244 (398)
T 1gc0_A          173 AKIARKHGATVVVDNTYCTPYLQRPL-E---L---GADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTG  244 (398)
T ss_dssp             HHHHGGGTCEEEEECTTTHHHHCCGG-G---G---TCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTC
T ss_pred             HHHHHHcCCEEEEECCCcccccCCch-h---h---CceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCC
Confidence            99999999999999999876553321 1   1   259999999999998866  577777543 232111100000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .       .                                         ...+..+++++.  .+.+..+.++..++++
T Consensus       245 ~-------~-----------------------------------------~~~~~~~~~~~~--l~~~~~~~~~~~~~~~  274 (398)
T 1gc0_A          245 A-------V-----------------------------------------LSPHDAALLMRG--IKTLNLRMDRHCANAQ  274 (398)
T ss_dssp             C-------C-----------------------------------------CCHHHHHHHHHH--HTTHHHHHHHHHHHHH
T ss_pred             C-------C-----------------------------------------CCHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence            0       0                                         011233333332  2234555666677777


Q ss_pred             HHHHHhcCCCCeE--------------EeCC---CCceeEEEEEcCCchHHHHHHHHHhccCcEEEE------------E
Q psy3048         264 KFADLVEKDDRFE--------------LVCP---PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII------------K  314 (367)
Q Consensus       264 ~l~~~L~~~~g~~--------------~~~~---~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~------------~  314 (367)
                      ++.+.|++++++.              +..+   ...++++|.+++ .  .....+.+.+.+.....            +
T Consensus       275 ~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~  351 (398)
T 1gc0_A          275 VLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-G--IGAGRRFMNALQLFSRAVSLGDAESLAQHP  351 (398)
T ss_dssp             HHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-H--HHHHHHHHHHCSSSEECSCCSCSSCEEECG
T ss_pred             HHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-C--HHHHHHHHHhCCCceeccCCCCcceeeecc
Confidence            7777777765543              2221   246788888864 1  22333444444432211            0


Q ss_pred             e--E----------ECC--eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         315 A--S----------FQG--RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       315 ~--~----------~~~--~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .  .          ..|  +.++|+|+ ...+++++|+.+.++|+++
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~iRis~-g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          352 ASMTHSSYTPEERAHYGISEGLVRLSV-GLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             GGTTTSSSCHHHHHHTTCCTTEEEEEC-CSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEe-CcCCHHHHHHHHHHHHHhc
Confidence            0  0          001  36999987 4678899999999988765

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.76  E-value=1.4e-17  Score=157.26  Aligned_cols=246  Identities=11%  Similarity=0.003  Sum_probs=165.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|++++.+|.++...++..|++++.++.++++.+  ++++++++        +.++++++++|++|.+.|+++|.++|+
T Consensus       107 d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~~~--------~~~v~i~~p~nptG~~~~~~~l~~l~~  176 (360)
T 3hdo_A          107 EEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPERYE--------GKVFFLTTPNAPLGPSFPLEYIDELAR  176 (360)
T ss_dssp             CEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSSBC--------SSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhhcC--------CCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence            35667889999999999999999999999776666  44433221        247888999999999999999999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ++|+++++|++|+.+... ..... .. ....++++.+.+|+++ .+.++|+++. +++...........          
T Consensus       177 ~~~~~li~De~~~~~~~~-~~~~~-~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~----------  242 (360)
T 3hdo_A          177 RCAGMLVLDETYAEFAES-NALEL-VR-RHENVVVTRTLSKSYSLAGMRIGLAIA-RPEVIAALDKIRDH----------  242 (360)
T ss_dssp             HBSSEEEEECTTGGGSSC-CCTHH-HH-HCSSEEEEEESTTTTSCTTSCCEEEEC-CHHHHHHHHHHSCS----------
T ss_pred             HCCCEEEEECChHhhCCc-chhHH-hc-cCCCEEEEecchHhhcCCccceeeEee-CHHHHHHHHHhCCC----------
Confidence            999999999999863211 11110 00 0122577889999986 3456788777 33333221100000          


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                           +                               .   ...+....+..+++.  .+.+++..++..++++++.+.|
T Consensus       243 -----~-------------------------------~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L  281 (360)
T 3hdo_A          243 -----Y-------------------------------N---LDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTEL  281 (360)
T ss_dssp             -----C-------------------------------C---SCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----C-------------------------------C---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence                 0                               0   000112233333432  4457888889999999999999


Q ss_pred             cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         270 EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       270 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      +++ |+.+. ++..+.+.+.+++  ....++.+.|.++|+ .+.+.. .....++|+++.    +++|+|+++++|+++.
T Consensus       282 ~~~-~~~~~-~~~~~~~~~~~~~--~~~~~l~~~l~~~gi-~v~~~~~~~~~~~iRis~~----~~~e~~~l~~al~~~~  352 (360)
T 3hdo_A          282 RSI-GYDVI-PSQGNYLFATPPD--RDGKRVYDGLYARKV-LVRHFSDPLLAHGMRISIG----TREEMEQTLAALKEIG  352 (360)
T ss_dssp             HHT-TCEEC-CCSSSEEEEECTT--CCHHHHHHHHHHTTE-ECBCCCSTTTTTSEEEECC----CHHHHHHHHHHHHHHH
T ss_pred             HHC-CCEEc-CCCccEEEEECCC--CCHHHHHHHHHHCCE-EEEECCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence            988 88865 4555667776653  235788889988884 343322 223568999763    7999999999999886


Q ss_pred             HH
Q psy3048         349 SE  350 (367)
Q Consensus       349 ~~  350 (367)
                      +.
T Consensus       353 ~~  354 (360)
T 3hdo_A          353 EG  354 (360)
T ss_dssp             C-
T ss_pred             cc
Confidence            53

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.75  E-value=3.5e-18  Score=166.53  Aligned_cols=260  Identities=12%  Similarity=0.055  Sum_probs=171.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCC------------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD------------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~------------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      .-.|++.+..|.++...++..|++++.++.+.            ++.+|+++|++++++.+      .+|++++++|++|
T Consensus       142 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~------~~v~l~~p~nptG  215 (447)
T 3b46_A          142 GDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKT------KAVIINTPHNPIG  215 (447)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTE------EEEEEESSCTTTC
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCC------eEEEEeCCCCCCC
Confidence            34566677899999999999999999998753            46899999999886543      4778889999999


Q ss_pred             cc---CChhhHHHHHhhcCcEEEEecccccccccCh--hhhhhhCCCCCcceeeecccccccc-CCcceeEEEecchhhh
Q psy3048          98 AF---DNLEELGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLT  171 (367)
Q Consensus        98 ~i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~--~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~  171 (367)
                      .+   +++++|+++|++||+++++|++|+.+.+..+  .......+....++++.+.+|+++. +..+|+++.++++.+.
T Consensus       216 ~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~  295 (447)
T 3b46_A          216 KVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLS  295 (447)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHH
T ss_pred             cccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHH
Confidence            98   5799999999999999999999987544211  1100000011248999999999873 3458988873333332


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-HHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-LKG  250 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g  250 (367)
                      ..... ..+.                                           .++   .......++..+|.... .+.
T Consensus       296 ~l~~~-~~~~-------------------------------------------~~~---~~~~~~~a~~~aL~~~~~~~~  328 (447)
T 3b46_A          296 YAAKA-HTRI-------------------------------------------CFA---SPSPLQEACANSINDALKIGY  328 (447)
T ss_dssp             HHHHH-HHHH-------------------------------------------TSS---CCHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHH-Hhhc-------------------------------------------cCC---CChHHHHHHHHHHhCCcchHH
Confidence            21100 0000                                           000   01111223334444322 345


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC--------------chHHHHHHHHHhc-cCcEEEEEe
Q psy3048         251 LQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--------------NDLTNQLYERLMS-HKQIYIIKA  315 (367)
Q Consensus       251 ~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~--------------~~~~~~l~~~L~~-~g~~~~~~~  315 (367)
                      +++..++..++++++.+.|+++ |+++..+.....+++.++..              .....++.+.|.+ .|+ .+.+.
T Consensus       329 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV-~v~pg  406 (447)
T 3b46_A          329 FEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGV-VAIPP  406 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCE-ECBCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCE-EEECc
Confidence            7778888999999999999887 78776554445566666531              1235578888875 564 44332


Q ss_pred             -EEC-------CeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         316 -SFQ-------GRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       316 -~~~-------~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                       .+.       +..++|+++.   .++++++.+++.|+++
T Consensus       407 ~~f~~~~~~~~~~~~iRls~~---~~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          407 TEFYIKEHEKAAENLLRFAVC---KDDAYLENAVERLKLL  443 (447)
T ss_dssp             GGGSCGGGGGGGTTEEEEECC---SCHHHHHHHHHHGGGG
T ss_pred             hHhCCCCccCCCCCEEEEEEe---CCHHHHHHHHHHHHHH
Confidence             111       1469999764   2799999999998764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.75  E-value=1.7e-17  Score=157.46  Aligned_cols=250  Identities=9%  Similarity=-0.064  Sum_probs=164.2

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~  107 (367)
                      -.|++++.+|.++...++..|++++.++.+++..+++ +|++++.+.++      +|++++++|++|.+.|   +++|++
T Consensus       109 d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~------~v~~~~p~nptG~~~~~~~l~~i~~  181 (376)
T 3ezs_A          109 PTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQEVD------LVILNSPNNPTGRTLSLEELISWVK  181 (376)
T ss_dssp             CEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHHCS------EEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             CEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccCCC------EEEEcCCCCCcCCCCCHHHHHHHHH
Confidence            4667778899999999999999999999876545565 78888877653      7778899999999966   677778


Q ss_pred             HHhhcCcEEEEecccccccccCh---hhhhhh-C--CCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccc
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLP---EYAHLK-R--GLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~---~~~~~~-~--~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|++||+++++|++|+.+.+...   ...... .  .....++++.+.+|+++ .+.++|+++.. ++.......    .
T Consensus       182 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~~~~----~  256 (376)
T 3ezs_A          182 LALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGD-SRLLEKYKA----F  256 (376)
T ss_dssp             HHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHH----H
T ss_pred             HHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeC-HHHHHHHHH----H
Confidence            89999999999999987554221   111000 0  01123788899999995 44667887763 332222100    0


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      . ...        .+                               +   .+.+....+..++..  .+.+++..++..+
T Consensus       257 ~-~~~--------~~-------------------------------~---~~~~~~~a~~~~l~~--~~~~~~~~~~~~~  291 (376)
T 3ezs_A          257 R-AYL--------GY-------------------------------T---SANAIQKASEAAWLD--DRHAEFFRNIYAN  291 (376)
T ss_dssp             H-TTT--------CC-------------------------------C---CCHHHHHHHHHHHHC--SHHHHHHHHHHHH
T ss_pred             H-hhh--------cC-------------------------------C---CChHHHHHHHHHHhC--cHHHHHHHHHHHH
Confidence            0 000        00                               0   000112233333332  3447788888889


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-E----CCeeEEEEEecCCCCCH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-F----QGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~----~~~~~lRi~~~~~~~~~  334 (367)
                      +.+++.+.|+   ++.  .+.....+.+.++    ...++.++|.+ +|+. +.++. +    .+..++|+++..   ++
T Consensus       292 ~~~~l~~~l~---~~~--~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~-v~~g~~~~~~~~~~~~iRis~~~---~~  358 (376)
T 3ezs_A          292 NLKLARKIFK---NTL--IYPYSFYVYLPVQ----NGENFAKTLYQNEGII-TLPALYLGRNRIGADYVRLALVY---DT  358 (376)
T ss_dssp             HHHHHHHHST---TCC--CCSBSSEEEEECS----CHHHHHHHHHHHHCCB-CEEGGGGCSTTTTTTEEEEECCS---CH
T ss_pred             HHHHHHHHhc---CCC--CCCcceEEEEECC----CHHHHHHHHHHhCCEE-EeCcHHhCCCCCCCCeEEEEEcC---CH
Confidence            9999999987   544  3334455566664    25678888887 6754 44332 1    245799997642   89


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQSSE  350 (367)
Q Consensus       335 edid~li~~l~~~~~~  350 (367)
                      +|+++++++|++++++
T Consensus       359 ~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          359 PLLEKPLEIIETYREN  374 (376)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998754

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.75  E-value=4.8e-17  Score=153.32  Aligned_cols=253  Identities=12%  Similarity=0.041  Sum_probs=159.1

Q ss_pred             eEEEecCCcchhHHHH---HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-cccCChhhH-
Q psy3048          31 LVAYASDQSNSSVEKS---AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAFDNLEEL-  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~---~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i~dl~~I-  105 (367)
                      .+|+++...|++....   +...|++++.++. +++.+|+++|+++ .+.      +.+|+++.++|++ |.+.|.+++ 
T Consensus        90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~~------~~~v~~~~p~n~~~G~~~~~~~l~  161 (359)
T 3pj0_A           90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-REP------VSSVLIELPQREIGGQLPAFEELE  161 (359)
T ss_dssp             CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SSC------CSEEEEESSBGGGTSBCCCHHHHH
T ss_pred             cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cCC------ceEEEEEecccCCCcccCCHHHHH
Confidence            4677788888776432   2456999999987 5689999999987 332      3578888888877 688665555 


Q ss_pred             --HHHHhhcCcEEEEecccccccccC--hhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         106 --GPICQEYNIWLHVDAAYAGSALLL--PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 --~~l~~~~gi~l~vD~a~~~~~~~~--~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                        .++|++||+++++|++|..+....  .......   ..+|+++.+.||++++|.| |+++. +++......... ...
T Consensus       162 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~~~-~~~l~~~~~~~~-~~~  235 (359)
T 3pj0_A          162 KISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AILAG-NDDFVQEAKIWK-RRY  235 (359)
T ss_dssp             HHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EEEEE-CHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EEEEC-CHHHHHHHHHHH-HHh
Confidence              999999999999999986443210  0111111   2359999999999988855 55444 444333221000 000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ... .        +                               .   .. ..+.....++...     .+.+++..++
T Consensus       236 ~~~-~--------~-------------------------------~---~~-~~~~a~~~~l~~~-----~~~~~~~~~~  266 (359)
T 3pj0_A          236 GGD-L--------I-------------------------------S---LY-PYILSADYYFEKR-----IGKMAEYFEA  266 (359)
T ss_dssp             TCC-C--------S-------------------------------C---CH-HHHHHHHHHHHHH-----GGGHHHHHHH
T ss_pred             CCC-c--------c-------------------------------h---hH-HHHHHHHHHHHHH-----HHHhHHHHHH
Confidence            000 0        0                               0   00 0011111222221     2445567788


Q ss_pred             HHHHHHHhcCCCCeEEe-CCCCceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEe---EECCeeEEEEEecCC--CCCH
Q psy3048         262 AKKFADLVEKDDRFELV-CPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKA---SFQGRPFLRFVVTSP--ETNQ  334 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~-~~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~---~~~~~~~lRi~~~~~--~~~~  334 (367)
                      ++++.+.|++++|+++. .++..+.+.++++... ....++.+.|.++|+. +.++   ...+..++|+++...  ..+.
T Consensus       267 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~-v~~g~~~~~~~~~~~r~~i~~~~~~~~~  345 (359)
T 3pj0_A          267 AKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVG-ISGYLQEKSADVCAFEVSVGDAFAEIPA  345 (359)
T ss_dssp             HHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEE-CCSCCEEEETTEEEEEEECCTTGGGSCH
T ss_pred             HHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcE-ecCCccccCCCceEEEEEecCccccCCH
Confidence            89999999999999986 4667788888886432 2356888889888854 3322   224677999976433  3467


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQ  347 (367)
Q Consensus       335 edid~li~~l~~~  347 (367)
                      ++++..++.|.+.
T Consensus       346 e~l~~~l~~l~~~  358 (359)
T 3pj0_A          346 KNLELVFRCLEKE  358 (359)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888877654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.75  E-value=2.6e-17  Score=157.21  Aligned_cols=254  Identities=9%  Similarity=0.008  Sum_probs=165.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh---HH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE---LG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~---I~  106 (367)
                      -.|+++..+|.++...++..|++++.++.++ ++.+|+++|++++++.+      .+|++++++|++|.+.|.++   |+
T Consensus       121 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~------~~v~l~~p~nptG~~~~~~~l~~i~  194 (396)
T 3jtx_A          121 PAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRT------KLVFVCSPNNPSGSVLDLDGWKEVF  194 (396)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCc------EEEEEECCCCCCCCcCCHHHHHHHH
Confidence            4677788899999999999999999999854 56789999999998754      47778899999999966555   99


Q ss_pred             HHHhhcCcEEEEecccccccccC----hhhhhh--hCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLL----PEYAHL--KRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~----~~~~~~--~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      ++|++||+++++|++|+.+.+..    ......  +..-...++++.+.+|.++ .+.++|+++.. ++........ ..
T Consensus       195 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~-~~~~~~~~~~-~~  272 (396)
T 3jtx_A          195 DLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGD-AELLKNFLLY-RT  272 (396)
T ss_dssp             HHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEEC-HHHHHHHHHH-HH
T ss_pred             HHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeC-HHHHHHHHHH-Hh
Confidence            99999999999999998754422    110000  0000133788889999654 34567887653 3333221100 00


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI  259 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~  259 (367)
                      +. .                                          +   ..+.+....+..++..  .+.+++..++..
T Consensus       273 ~~-~------------------------------------------~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~  304 (396)
T 3jtx_A          273 YH-G------------------------------------------S---AMSIPVQRASIAAWDD--EQHVIDNRRLYQ  304 (396)
T ss_dssp             HH-T------------------------------------------C---CCCHHHHHHHHHHHHC--CHHHHHHHHHHH
T ss_pred             hc-c------------------------------------------c---CCCHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence            00 0                                          0   0000111222333332  456778888888


Q ss_pred             HHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---------CCeeEEEEEecC
Q psy3048         260 SLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---------QGRPFLRFVVTS  329 (367)
Q Consensus       260 ~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---------~~~~~lRi~~~~  329 (367)
                      ++.+++.+.|+++  +.+..+.....+++.++.  ....++.++|.++ | +.+.++..         .+..++|+++..
T Consensus       305 ~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g-i~v~~g~~~~~~~~~~~~~~~~iRis~~~  379 (396)
T 3jtx_A          305 EKFERVIPILQQV--FDVKLPDASFYIWLKVPD--GDDLAFARNLWQKAA-IQVLPGRFLARDTEQGNPGEGYVRIALVA  379 (396)
T ss_dssp             HHHHHHHHHHTTT--SCCCCCSSSSEEEEECTT--SCHHHHHHHHHHHHC-EECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred             HHHHHHHHHHHhc--CCccCCCeeEEEEEECCC--CCHHHHHHHHHHHCC-EEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence            9999999999876  233333344456666653  2356788888654 6 44544322         235799997643


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~  348 (367)
                         +++++++++++|++++
T Consensus       380 ---~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          380 ---DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             ---CHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHHHHHHHHh
Confidence               7999999999998763

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.75  E-value=7.2e-17  Score=157.39  Aligned_cols=266  Identities=10%  Similarity=0.053  Sum_probs=163.8

Q ss_pred             EecCCcc-hhHHHHHHhCCcceEEEecCC----------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCC-cccccCC
Q psy3048          34 YASDQSN-SSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTT-GTCAFDN  101 (367)
Q Consensus        34 ~~s~~~H-~s~~~~~~~~g~~v~~v~~~~----------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t-~~G~i~d  101 (367)
                      +++..+| .++..++...|++++.+++++          ++.+|+++|++++++.++  ..+.+|+++.++| ++|.+.|
T Consensus       116 i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~  193 (456)
T 2ez2_A          116 YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVS  193 (456)
T ss_dssp             EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCC
T ss_pred             EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCccCC
Confidence            4456677 777888889999999998762          378999999999987652  1135778887887 8998876


Q ss_pred             ---hhhHHHHHhhcCcEEEEecccccc---------cccChh-hhh---hhCCCCCcceeeeccccccccCCcceeEEEe
Q psy3048         102 ---LEELGPICQEYNIWLHVDAAYAGS---------ALLLPE-YAH---LKRGLEYVDSFAFNAHKWLLTNHDCSAMWVK  165 (367)
Q Consensus       102 ---l~~I~~l~~~~gi~l~vD~a~~~~---------~~~~~~-~~~---~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~  165 (367)
                         +++|+++|++||+++++|++|+.+         ....+. ...   .. + ...|++++++||+++.| ..|+++.+
T Consensus       194 ~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~d~~~~S~kk~~~~~-~gG~~~~~  270 (456)
T 2ez2_A          194 MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM-F-SYADGCTMSGKKDCLVN-IGGFLCMN  270 (456)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH-H-TTCSEEEEETTTTTCCS-SCEEEEES
T ss_pred             HHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh-c-ccCCEEEEeCcccCCCC-ceeEEEEC
Confidence               999999999999999999999864         111111 000   00 1 13488888899997744 46777764


Q ss_pred             cchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHH-HHH
Q psy3048         166 NANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWM-TLR  244 (367)
Q Consensus       166 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  244 (367)
                      +++...........+.  +..       .+                                  .+...  ..+.+ ++.
T Consensus       271 ~~~~~~~~~~~~~~~~--~~~-------~~----------------------------------~~~~~--~~~~a~a~~  305 (456)
T 2ez2_A          271 DDEMFSSAKELVVVYE--GMP-------SY----------------------------------GGLAG--RDMEAMAIG  305 (456)
T ss_dssp             CHHHHHHHHHHHHHHT--CCT-------TT----------------------------------TTCCH--HHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcc--Ccc-------cc----------------------------------cCcch--hHHHHHHHH
Confidence            5443332111000000  000       00                                  00000  01111 111


Q ss_pred             HhhHHHH-HHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEc----CC--chH-HHHHHHHH-hccCcEEEEEe
Q psy3048         245 SYGLKGL-QAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLK----GD--NDL-TNQLYERL-MSHKQIYIIKA  315 (367)
Q Consensus       245 ~~~~~g~-~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~----~~--~~~-~~~l~~~L-~~~g~~~~~~~  315 (367)
                      ..  +.+ ++..++..++++++.+.|++. |+++..|.....+.+.+.    +.  ... ...+.+.| .++|+..+..+
T Consensus       306 ~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g  382 (456)
T 2ez2_A          306 LR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG  382 (456)
T ss_dssp             HH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEES
T ss_pred             HH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccc
Confidence            11  223 466677788899999999885 777665555555666542    11  122 33446677 46674333322


Q ss_pred             E-------------ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 S-------------FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 ~-------------~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .             ..+..++|+++....++++|+++++++|++++++..
T Consensus       383 ~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          383 IISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             HHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             ccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            1             112368999775433789999999999999988654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.75  E-value=4.2e-17  Score=157.79  Aligned_cols=270  Identities=16%  Similarity=0.143  Sum_probs=162.9

Q ss_pred             ceEEEecCCcchhHHHHH----HhCCcceEEE-ecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          30 RLVAYASDQSNSSVEKSA----IIGDVPVRQL-RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~----~~~g~~v~~v-~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +-.|+++..+|.+....+    +..|++++.+ +.+     |+++|++++++.+      .+|++++++|++|.+.|+++
T Consensus        97 gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~~~~------~~v~~~~~~n~~G~~~~l~~  165 (421)
T 2ctz_A           97 GDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEKT------RAWWVESIGNPALNIPDLEA  165 (421)
T ss_dssp             TCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHhhccCC------eEEEEECCCCCCCcccCHHH
Confidence            446778889999987775    6689999998 764     8999999997655      47888999999999999999


Q ss_pred             HHHHHhhcCcEEEEeccc-ccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecc--hh----hhhhccC
Q psy3048         105 LGPICQEYNIWLHVDAAY-AGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNA--NH----LTNTFFT  176 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~-~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~--~~----~~~~~~~  176 (367)
                      |.++|++||+++++|++| +.+. ......   .   .+|++++++||++++|.+ .|++++.++  +.    +......
T Consensus       166 i~~~a~~~g~~livD~~~~~~g~-~~~~~~---~---~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~  238 (421)
T 2ctz_A          166 LAQAAREKGVALIVDNTFGMGGY-LLRPLA---W---GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP  238 (421)
T ss_dssp             HHHHHHHHTCEEEEECGGGGGGT-SCCGGG---G---TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred             HHHHHHHcCCEEEEECCcccccc-cCCccc---c---CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccc
Confidence            999999999999999999 6553 222211   1   359999999999998753 787777531  11    1111111


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                      ...+...          .+ ...+-      +..+.. ..+      .......+.....+..+..+.  +.+.+..+++
T Consensus       239 ~~g~~g~----------~~-~~~~~------~~~~~~-~~r------~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~  292 (421)
T 2ctz_A          239 QPGYHGL----------RL-TEAFG------ELAFIV-KAR------VDGLRDQGQALGPFEAWVVLL--GMETLSLRAE  292 (421)
T ss_dssp             BGGGTTB----------CH-HHHHG------GGHHHH-HHH------HTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHH
T ss_pred             cchhhhh----------hh-hhhcc------hhHHHH-HHH------HHHHHhcCCCCCHHHHHHHHc--CcchHHHHHH
Confidence            0111000          00 00000      000000 000      000000011122333333332  3444566677


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeC-C-----------------CCceeEEEEEcCCchHHHHHHHHHhccCcE--------
Q psy3048         257 KHISLAKKFADLVEKDDRFELVC-P-----------------PSMGLVCFRLKGDNDLTNQLYERLMSHKQI--------  310 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~-~-----------------~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~--------  310 (367)
                      +..++++++.+.|+++|++..+. |                 ...++++|.+.+.......+.+.+...+..        
T Consensus       293 ~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~s  372 (421)
T 2ctz_A          293 RHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRT  372 (421)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSC
T ss_pred             HHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCc
Confidence            78899999999999999998763 2                 135688999865212334555555332210        


Q ss_pred             -EEEEe--EE------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         311 -YIIKA--SF------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       311 -~~~~~--~~------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                       ...+.  .+            -.++.+|+|+.     .+|+|.+++.|++.+
T Consensus       373 l~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g-----~e~~~~li~~l~~al  420 (421)
T 2ctz_A          373 LAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG-----LEHVEDLKAELKEAL  420 (421)
T ss_dssp             EEECGGGTTTTTSCHHHHHHHTCCTTEEEEECC-----SSCHHHHHHHHHHHT
T ss_pred             eeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-----CCCHHHHHHHHHHHh
Confidence             01110  00            01368999763     357888888888764

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.75  E-value=2.7e-17  Score=159.33  Aligned_cols=263  Identities=14%  Similarity=0.138  Sum_probs=163.3

Q ss_pred             ceEEEecCCcchhHHH----HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~----~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..|.+...    .+...|+++++++.+     |+++|++++++.+      .+|++.+++|++|.+.|+++|
T Consensus       121 Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~~~t------~~v~~e~p~NptG~~~dl~~i  189 (430)
T 3ri6_A          121 GDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACDETT------KLLFLETISNPQLQVADLEAL  189 (430)
T ss_dssp             TCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhCCCC------eEEEEECCCCCCCeecCHHHH
Confidence            3456778889988877    556789999999875     8999999997755      488899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-cceeEEE-ecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSAMWV-KNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~l~~-~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++|+++|+++++|++|+.+.+..+.    ..+   +|+++.+++|++++|. +.|.+++ +........ ..-+.+...
T Consensus       190 ~~la~~~g~~livD~a~~~~~~~~~~----~~g---~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~-~~~~~l~~~  261 (430)
T 3ri6_A          190 SKVVHAKGIPLVVDTTMTPPYLLEAK----RLG---VDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSL-PSLAPYYAK  261 (430)
T ss_dssp             HHHHHTTTCCEEEECTTSCTTTCCGG----GGT---CSEEEEECCCEEETTEEECCEEEEECSCSCGGGS-TTTHHHHHH
T ss_pred             HHHHHHcCCEEEEECCCcccccCChH----HcC---CEEEEECCcccccCCCCceEEEEEECChHHhhhc-cchhhhhhh
Confidence            99999999999999999876552221    123   4999999999998762 2444444 322111000 000000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ..      ...+ +... .                     ..+....+.....+..|..+  .+.+.+..++++..++++
T Consensus       262 ~g------~~~~-i~~~-~---------------------~~~~~~~g~~~~~~~a~l~l--~~l~~l~~r~~~~~~na~  310 (430)
T 3ri6_A          262 AG------PMAF-LYKA-R---------------------KEVFQNLGPSLSPHNAYLQS--LGLETMALRIERSCQNAQ  310 (430)
T ss_dssp             HG------GGHH-HHHH-H---------------------HTHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             hc------hhhH-HHHH-H---------------------HHHHHhcCCCCCHHHHHHHH--hhhhhHHHHHHHHHHHHH
Confidence            00      0000 0000 0                     00000001112223334333  356677888889999999


Q ss_pred             HHHHHhcCCCCeEEeCCCC----------------ce-eEEEEEcCCchHHHHHHHHHhccCc---------EEEEE---
Q psy3048         264 KFADLVEKDDRFELVCPPS----------------MG-LVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIK---  314 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~----------------~~-~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~---  314 (367)
                      ++.+.|+++|+++-+..|.                .+ +++|.+++ .....++.+.|...+.         ..+.|   
T Consensus       311 ~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~  389 (430)
T 3ri6_A          311 ELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-KEASYRFMDALKLIRRATNIHDNKSLILSPYHV  389 (430)
T ss_dssp             HHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGG
T ss_pred             HHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-HHHHHHHHHhCCcceecCCCCCCCceeeCCccc
Confidence            9999999999887443222                34 89999874 4455677777653321         00100   


Q ss_pred             --e-----EE----CCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         315 --A-----SF----QGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       315 --~-----~~----~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                        .     ..    ..+.++|+|+.     .||++.+++.|++.+
T Consensus       390 ~h~~~~~~~~~~~g~~~~liRlsvG-----~E~~~dl~~dl~~al  429 (430)
T 3ri6_A          390 IYALNSHEERLKLEISPAMMRLSVG-----IEEIEDLKEDILQAL  429 (430)
T ss_dssp             C---------CGGGSCTTEEEEECC-----SSCHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHhcCCCCCeEEEEec-----cCCHHHHHHHHHHhh
Confidence              0     00    12468999763     367888888888764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.74  E-value=1.3e-17  Score=163.14  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=96.2

Q ss_pred             eEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+....    ++..|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|+
T Consensus       172 d~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~t------k~v~l~~p~NptG~v~~l~~i~  240 (464)
T 1ibj_A          172 EEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQT------KLVWLESPTNPRQQISDIRKIS  240 (464)
T ss_dssp             CEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSSE------EEEEECSSCTTTCCCCCHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccCc------eEEEEeCCCCCCCEeecHHHHH
Confidence            3566778889888764    45679999999874     8999999987554      5888999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc--eeEEEecch
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC--SAMWVKNAN  168 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~--g~l~~~~~~  168 (367)
                      ++|++||+++++|++|+.+....+ ..   .   .+|+++.++||++++|.|+  |+++.+++.
T Consensus       241 ~la~~~gi~livDea~~~g~~~~~-~~---~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~~  297 (464)
T 1ibj_A          241 EMAHAQGALVLVDNSIMSPVLSRP-LE---L---GADIVMHSATKFIAGHSDVMAGVLAVKGEK  297 (464)
T ss_dssp             HHHHTTTCEEEEECTTTCTTTCCG-GG---T---TCSEEEEETTTTTTCSSCCCCEEEEECSHH
T ss_pred             HHHHHcCCEEEEECCCcccccCCh-hh---c---CCEEEEECCcccccCCCCCcEEEEEEChHH
Confidence            999999999999999976543211 11   1   3599999999999998876  888886544

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.74  E-value=1.1e-16  Score=154.30  Aligned_cols=262  Identities=11%  Similarity=0.053  Sum_probs=163.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecC-CCcccccCChhhHH-
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAFDNLEELG-  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i~dl~~I~-  106 (367)
                      .-.|++++.+|.++...++..|++++.++++ +++.+|+++|++++++..... ...+++++++ +|++|.+.|.+++. 
T Consensus       126 gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~  204 (418)
T 3rq1_A          126 GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDS  204 (418)
T ss_dssp             TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHH
Confidence            3457778889999999999999999999984 567999999999998632100 1237778888 89999997765555 


Q ss_pred             --HHHh------hcCcEEEEecccccccccChhhhhh---hCCCCCcc---eeeecccccccc-CCcceeEEE--ecchh
Q psy3048         107 --PICQ------EYNIWLHVDAAYAGSALLLPEYAHL---KRGLEYVD---SFAFNAHKWLLT-NHDCSAMWV--KNANH  169 (367)
Q Consensus       107 --~l~~------~~gi~l~vD~a~~~~~~~~~~~~~~---~~~~~~~D---~~~~~~hK~l~~-p~g~g~l~~--~~~~~  169 (367)
                        ++|+      +||+++++|++|..+.+........   ..++. .|   +++.+.+|.++. +..+|+++.  ++++.
T Consensus       205 l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~  283 (418)
T 3rq1_A          205 ILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP-KEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEI  283 (418)
T ss_dssp             HHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCC-TTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHH
T ss_pred             HHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcC-CCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHH
Confidence              5555      8999999999997654322111111   11121 12   666789999864 356788776  23333


Q ss_pred             hhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh--
Q psy3048         170 LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG--  247 (367)
Q Consensus       170 ~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  247 (367)
                      ....... ..+.....                                        |.  .   ...+...++...+.  
T Consensus       284 ~~~~~~~-~~~~~~~~----------------------------------------~~--~---~~~~~~~a~~~~l~~~  317 (418)
T 3rq1_A          284 ADEFFEV-NKSTSRAT----------------------------------------WS--N---ICRPAMRTMANIVADP  317 (418)
T ss_dssp             HHHHHHH-HHHHHHHH----------------------------------------TS--S---CCHHHHHHHHHHHTCH
T ss_pred             HHHHHHH-HHHHHhhc----------------------------------------cC--C---CchHHHHHHHHHhCCH
Confidence            3221100 00000000                                        00  0   01122222222221  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeE-EEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         248 ------LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLV-CFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       248 ------~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v-~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                            .+..+++.++..++.+++.+.|+++ |+++..+ ..+.+ ++.+.    ...++.+.|.++|+ ++.+    +.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi-~v~~----g~  386 (418)
T 3rq1_A          318 AKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPY-RGGFFITIPTD----SANAICEELKKEHI-YVIA----LA  386 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC-CSSSEEEEECT----THHHHHHHHHHTTE-ECEE----CS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-CceEEEEcCCC----CHHHHHHHHHhCCE-EEec----CC
Confidence                  1233455667778888888888887 7776543 33433 33332    25678888888884 4443    24


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .++|+++.  ..+++++++++++|+++++++.
T Consensus       387 ~~iRis~~--~~~~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          387 NGIRIAAC--GIPKCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             SEEEEEGG--GSCHHHHTTHHHHHHHHHHHTT
T ss_pred             CCeEEEEe--cCCHHHHHHHHHHHHHHHHHHh
Confidence            58999753  4579999999999999988764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.74  E-value=2.4e-17  Score=158.61  Aligned_cols=121  Identities=17%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             eEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+....    ++..|++++.++.+     |+++|++++++.+      .+|++++++|++|.+.|+++|+
T Consensus       106 d~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~t------~~v~~~~p~nptG~~~~l~~i~  174 (403)
T 3cog_A          106 DQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITPET------KLVWIETPTNPTQKVIDIEGCA  174 (403)
T ss_dssp             CEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCcCC------eEEEEECCCCCCCeeeCHHHHH
Confidence            3577778899886554    34679999999875     8999999987654      4888899999999999999999


Q ss_pred             HHHhhcC-cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchh
Q psy3048         107 PICQEYN-IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANH  169 (367)
Q Consensus       107 ~l~~~~g-i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~  169 (367)
                      ++|++|| +++++|++|+.+.+..+ ..     . .+|+++.+.||++++|.+  +|+++.+++..
T Consensus       175 ~la~~~g~~~livD~~~~~~~~~~~-~~-----~-~~div~~S~sK~~~g~~~~~~G~v~~~~~~l  233 (403)
T 3cog_A          175 HIVHKHGDIILVVDNTFMSPYFQRP-LA-----L-GADISMYSATKYMNGHSDVVMGLVSVNCESL  233 (403)
T ss_dssp             HHHTSSSCCEEEEECTTTCTTTCCT-TT-----T-TCSEEEEETTTTTTCSSCCCCEEEEECCHHH
T ss_pred             HHHHHcCCCEEEEECCCcccccCCc-cc-----c-CCeEEEEcChhhccCCCCCeEEEEEECcHHH
Confidence            9999999 99999999987654221 11     1 359999999999998876  48888765443

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.74  E-value=4.3e-17  Score=159.39  Aligned_cols=269  Identities=14%  Similarity=0.128  Sum_probs=157.6

Q ss_pred             EEecCCcchh-HHHHHHhCCcceEEEecC----------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc-
Q psy3048          33 AYASDQSNSS-VEKSAIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF-   99 (367)
Q Consensus        33 v~~s~~~H~s-~~~~~~~~g~~v~~v~~~----------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i-   99 (367)
                      |+++ ..|+. +..++...|.+++.++.+          .++.+|+++|++++++...  ..+.+|+++.++|++ |.+ 
T Consensus       125 viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~--~~~~~vi~~~~~np~gG~~~  201 (467)
T 1ax4_A          125 VFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPV  201 (467)
T ss_dssp             EEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCC
T ss_pred             EEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCC--CCeeEEEEeccccCCCccCC
Confidence            4445 56644 466777788888876532          1467999999999986320  013588888899999 776 


Q ss_pred             --CChhhHHHHHhhcCcEEEEeccccc-cccc--------Ch-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEec
Q psy3048         100 --DNLEELGPICQEYNIWLHVDAAYAG-SALL--------LP-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus       100 --~dl~~I~~l~~~~gi~l~vD~a~~~-~~~~--------~~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                        +++++|+++|++||+++|+|++|+. +.++        .+ ........ ...+|+++++.||+++.|.| |+++.++
T Consensus       202 ~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d  280 (467)
T 1ax4_A          202 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRD  280 (467)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESS
T ss_pred             ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCC
Confidence              5678999999999999999998764 1110        00 00000000 02358899999999987644 5555553


Q ss_pred             c-hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH
Q psy3048         167 A-NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS  245 (367)
Q Consensus       167 ~-~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (367)
                      + +...........+  .+..       .+                               ..  .......++..++..
T Consensus       281 ~~~l~~~~~~~~~~~--~~~~-------~~-------------------------------~~--~~~~~~~a~~~~l~~  318 (467)
T 1ax4_A          281 NEEIFTLARQRCVPM--EGFV-------TY-------------------------------GG--LAGRDMAAMVQGLEE  318 (467)
T ss_dssp             CHHHHHHHHHHHHHH--TCST-------TT-------------------------------TT--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc--cccc-------cc-------------------------------CC--ccchHHHHHHHHHHH
Confidence            4 4433221100001  1000       00                               00  000001112223332


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEE-------EcCCchHHHHHHHHH-hccCcEEEEE-eE
Q psy3048         246 YGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFR-------LKGDNDLTNQLYERL-MSHKQIYIIK-AS  316 (367)
Q Consensus       246 ~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~-------~~~~~~~~~~l~~~L-~~~g~~~~~~-~~  316 (367)
                      ...   ++..++..++++++.+.|++ +|+++..+.....+.+.       +........++.++| .++|+ .+.+ +.
T Consensus       319 ~~~---~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv-~v~~~g~  393 (467)
T 1ax4_A          319 GTE---EEYLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGV-RAVEIGS  393 (467)
T ss_dssp             TTC---HHHHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCE-ECEEESH
T ss_pred             hhh---hhHHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCc-eeeecCc
Confidence            211   22344455777888888877 57776655555566666       321112356788888 77774 4433 21


Q ss_pred             E--------C-----CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         317 F--------Q-----GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       317 ~--------~-----~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .        .     ...++|+++....++++|++++++.|++++++..
T Consensus       394 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~  442 (467)
T 1ax4_A          394 FLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  442 (467)
T ss_dssp             HHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             cccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence            1        0     1369999775445889999999999999988753

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.74  E-value=1.3e-17  Score=160.06  Aligned_cols=258  Identities=8%  Similarity=-0.034  Sum_probs=168.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-----------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-----------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-----------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      .-.|++...+|.++...+...|.+++.++.+           .++.+|+++|++++++.+      .+|++++++|++|.
T Consensus       109 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~------~~v~~~~p~nptG~  182 (410)
T 3e2y_A          109 GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT------KAIILNTPHNPLGK  182 (410)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE------EEEEEESSCTTTCC
T ss_pred             CCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCc------eEEEEeCCCCCCCc
Confidence            3456677889999999999999999999875           356789999999886544      57888899999999


Q ss_pred             c---CChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhh
Q psy3048          99 F---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        99 i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~  172 (367)
                      +   +++++|+++|++||+++++|++|+.+.+.......  ...+....+++..+.+|.++ .+.++|+++.+. +.+..
T Consensus       183 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~~~~  261 (410)
T 3e2y_A          183 VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA-HLIKH  261 (410)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH-HHHHH
T ss_pred             CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECH-HHHHH
Confidence            9   68999999999999999999999865442211000  01111122477788899997 446688877643 22221


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH------h
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS------Y  246 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~  246 (367)
                      ..    .......                                        ++   ...+....+..++..      .
T Consensus       262 ~~----~~~~~~~----------------------------------------~~---~~~~~~~a~~~~l~~~~~~~~~  294 (410)
T 3e2y_A          262 LQ----TVQQNSF----------------------------------------YT---CATPLQAALAEAFWIDIKRMDD  294 (410)
T ss_dssp             HH----HHHHTTT----------------------------------------CC---CCHHHHHHHHHHHHHHHTTTTS
T ss_pred             HH----HHHHhhc----------------------------------------cC---CChHHHHHHHHHHHhhhccccc
Confidence            10    0000000                                        00   000112233333332      1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc----------hHHHHHHHHHh-ccCcEEEEEe
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN----------DLTNQLYERLM-SHKQIYIIKA  315 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~----------~~~~~l~~~L~-~~g~~~~~~~  315 (367)
                      ..+.+++..++..++++++.+.|+++ |+.+..+.....+++.+....          ....++.+++. +.| +++.++
T Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-v~v~~g  372 (410)
T 3e2y_A          295 PECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKK-LTAIPV  372 (410)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHS-EECEEG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcC-EEEeCc
Confidence            24567888888999999999999998 888776655555556553210          01236666665 456 455443


Q ss_pred             E-EC-------CeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         316 S-FQ-------GRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       316 ~-~~-------~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      . +.       +.+++|+++..   +++++++++++|++
T Consensus       373 ~~f~~~~~~~~~~~~iRis~~~---~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          373 SAFCDSKSKPHFEKLVRFCFIK---KDSTLDAAEEIFRA  408 (410)
T ss_dssp             GGGSCTTTHHHHTTEEEEECCC---CHHHHHHHHHHHHT
T ss_pred             hhhCCCCCCCCCCCEEEEEEcC---CHHHHHHHHHHHHh
Confidence            2 21       24699997643   89999999999875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.74  E-value=1.1e-16  Score=154.44  Aligned_cols=264  Identities=9%  Similarity=-0.035  Sum_probs=164.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEE-EecCCCcccccCChh---hHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLV-ATLGTTGTCAFDNLE---ELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv-~~~~~t~~G~i~dl~---~I~  106 (367)
                      -.|++.+.+|..+...++..|++++.++.++++ +|+++|++++++..    .+.+|+ ..+++|++|.+.|.+   +|+
T Consensus       125 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~  199 (423)
T 3ez1_A          125 PKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTDP----SVKGILFVPTYSNPGGETISLEKARRLA  199 (423)
T ss_dssp             CEEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSCT----TEEEEEECSSSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhCC----CceEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            466778889999999999999999999997664 99999999995211    123554 447899999997776   899


Q ss_pred             HHH-hhcCcEEEEecccccccccC-h-----hhhhhh--CCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         107 PIC-QEYNIWLHVDAAYAGSALLL-P-----EYAHLK--RGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       107 ~l~-~~~gi~l~vD~a~~~~~~~~-~-----~~~~~~--~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      ++| ++||+++++|++|+...+.. +     ......  .+....+++..+.+|++..+.++|+++... +........ 
T Consensus       200 ~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~~~~~~~~~-  277 (423)
T 3ez1_A          200 GLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE-DNIRWLSKY-  277 (423)
T ss_dssp             TCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH-HHHHHHHHH-
T ss_pred             HHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH-HHHHHHHHH-
Confidence            999 99999999999998533321 0     010000  011233688889999977678888887743 222211000 


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH-hh--HHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS-YG--LKGLQAY  254 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~g~~~~  254 (367)
                      ......                                              ....+....+..++.. .+  .+.+++.
T Consensus       278 ~~~~~~----------------------------------------------~~~~~~~~a~~~~l~~~~~~~~~~~~~~  311 (423)
T 3ez1_A          278 LGAQSI----------------------------------------------GPNKVEQARHVKFLTEYPGGLEGLMRDH  311 (423)
T ss_dssp             HHHSCS----------------------------------------------CCCHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred             Hhhhcc----------------------------------------------CCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            000000                                              0000111122222222 01  1222222


Q ss_pred             ----HHHHHHHHHHHHHHhcCCC-CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eE-E-----CCeeE
Q psy3048         255 ----LRKHISLAKKFADLVEKDD-RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-AS-F-----QGRPF  322 (367)
Q Consensus       255 ----~~~~~~la~~l~~~L~~~~-g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~-~-----~~~~~  322 (367)
                          .++...+.+.+.+.|.+++ ++.+..+.....+++.++..  ...++.+.|.++|+ .+.+ +. +     .+..+
T Consensus       312 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~~  388 (423)
T 3ez1_A          312 AAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP--VADRVVKLAEAAGV-SLTPAGATYPAGQDPHNRN  388 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS--CHHHHHHHHHHTTE-ECCCTTTTSSTTCCSSSCE
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC--cHHHHHHHHHHCCc-EEecCcccccCCCCCCCCe
Confidence                2334445555666666665 47776665666777887652  35678888888884 4433 21 1     23579


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      +|+++.  ..+++++++++++|+++++++.
T Consensus       389 iRis~~--~~~~~~i~~~~~~l~~~l~~~~  416 (423)
T 3ez1_A          389 LRLAPT--RPPVEEVRTAMQVVAACIRLAT  416 (423)
T ss_dssp             EEECCS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            999763  2389999999999999988764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.73  E-value=1e-16  Score=153.26  Aligned_cols=245  Identities=14%  Similarity=0.069  Sum_probs=154.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.+|+.+...|.+...++...|.+            +..++.     .|+++|++++++.+      .+|+++.+++++|
T Consensus       131 ~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~------~~v~~~~~~~~tG  199 (395)
T 1vef_A          131 KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEET------AAVILEPVQGEGG  199 (395)
T ss_dssp             CEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTE------EEEEECSEETTTT
T ss_pred             CeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCE------EEEEEeCccCCCC
Confidence            455665555555666666666664            333332     48999999987543      4677777677899


Q ss_pred             ccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhh
Q psy3048          98 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT  173 (367)
Q Consensus        98 ~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~  173 (367)
                      .+.|    +++|.++|++||+++++|++|+++............++ ..|++  +.+|++++|.++|+++.+++ .... 
T Consensus       200 ~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~~g~~~G~~~~~~~-~~~~-  274 (395)
T 1vef_A          200 VRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDIL--TLAKALGGGVPLGVAVMREE-VARS-  274 (395)
T ss_dssp             SEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEE--EECGGGGTTSSCEEEEEEHH-HHHT-
T ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC-CCCEE--EEcccccCCCceEEEEehHH-HHhh-
Confidence            8877    99999999999999999999984322111111111122 34766  45999998888999998653 3322 


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  253 (367)
                      +..       ...     ...+                               .   ...+.+..+.++++.+..   ++
T Consensus       275 l~~-------~~~-----~~~~-------------------------------~---~~~~~~~a~~~al~~~~~---~~  305 (395)
T 1vef_A          275 MPK-------GGH-----GTTF-------------------------------G---GNPLAMAAGVAAIRYLER---TR  305 (395)
T ss_dssp             SCT-------TSS-----CCSS-------------------------------T---TCHHHHHHHHHHHHHHHH---HT
T ss_pred             hcc-------CCc-----CCCc-------------------------------C---CCHHHHHHHHHHHHHHHh---CC
Confidence            111       000     0000                               0   011122334444554432   34


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC--eEEeCCCCceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKDDR--FELVCPPSMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g--~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      +.++..++++++.+.|++++.  +.. .++..+.+.+.++. +  ..++.+.|. ++|+ .+.+   .+..++|+++ +.
T Consensus       306 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~g~~~~~~~~~-~--~~~l~~~l~~~~gi-~v~~---~~~~~iRi~~-~~  376 (395)
T 1vef_A          306 LWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKE-K--AAPYIARLEKEHRV-LALQ---AGPTVIRFLP-PL  376 (395)
T ss_dssp             THHHHHHHHHHHHHHHHTSCCTTEEE-EEEETTEEEEEESS-C--SHHHHHHHHHHHCE-ECEE---SSTTEEEECC-CT
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCceEE-EEEEEEEEEEEEcC-h--HHHHHHHHHHHCCe-EEec---CCCCEEEEeC-CC
Confidence            567788899999999988742  211 12334567777754 2  567888888 7884 3433   2456999965 56


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~  348 (367)
                      .++++|+++++++|++++
T Consensus       377 ~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          377 VIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            788999999999998874

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.73  E-value=7.6e-17  Score=157.16  Aligned_cols=262  Identities=13%  Similarity=-0.015  Sum_probs=160.0

Q ss_pred             eEEEecCCcchh-HHHH--HHhC--CcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          31 LVAYASDQSNSS-VEKS--AIIG--DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s-~~~~--~~~~--g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      -.|++++.+|.+ ...+  ....  +..++.++.+ +++.+|+++|++++++..     +.+|+++.++++++.  |+++
T Consensus       132 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~  204 (447)
T 3h7f_A          132 ERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAA  204 (447)
T ss_dssp             CEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHH
T ss_pred             CEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHH
Confidence            356666777755 1111  1122  3345555554 568899999999997542     246777667776655  9999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |.++|++||+++++|++|+.+....+....   .+..+|+++.+.||++.+|.| |+++.++ +..........++... 
T Consensus       205 i~~l~~~~g~lli~Dea~~~g~~~~g~~~~---~~~~~di~~~s~sK~l~G~~g-G~i~~~~-~~~~~l~~~~~~~~~~-  278 (447)
T 3h7f_A          205 FRSIADEVGAKLLVDMAHFAGLVAAGLHPS---PVPHADVVSTTVHKTLGGGRS-GLIVGKQ-QYAKAINSAVFPGQQG-  278 (447)
T ss_dssp             HHHHHHHHTCEEEEECTTTHHHHHTTSSCC---STTTCSEEEEESSGGGCCCSC-EEEEECG-GGHHHHHHHHTTTTCS-
T ss_pred             HHHHHHHcCCEEEEECCchhhhhcCCCCCC---CCCCCcEEEecCCcCCCCCCe-EEEEECH-HHHHHHhhhcCCcccC-
Confidence            999999999999999998665432221111   123469999999999987766 7777654 2222110000000000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                             .                                      .......++.+++.....++++++.++..+++++
T Consensus       279 -------~--------------------------------------~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~  313 (447)
T 3h7f_A          279 -------G--------------------------------------PLMHVIAGKAVALKIAATPEFADRQRRTLSGARI  313 (447)
T ss_dssp             -------S--------------------------------------CCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             -------C--------------------------------------ccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence                   0                                      0001123444455555555778888999999999


Q ss_pred             HHHHhcCC----CCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----Ee---EECCeeEEEEEecC---
Q psy3048         265 FADLVEKD----DRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KA---SFQGRPFLRFVVTS---  329 (367)
Q Consensus       265 l~~~L~~~----~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~---~~~~~~~lRi~~~~---  329 (367)
                      +.+.|++.    +|++++.+ ...+.+.+.+.+.......+.+.|.+.|+. +.    +.   ....+..+|++...   
T Consensus       314 l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~-v~~~~i~~~~~~p~~~~~lRig~~~~~~  392 (447)
T 3h7f_A          314 IADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGIT-VNRNAVPNDPRPPMVTSGLRIGTPALAT  392 (447)
T ss_dssp             HHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEE-CBC-------------CEEEEECHHHHH
T ss_pred             HHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeE-EecccCCCCCCCCCCCCceeccCHHHhh
Confidence            99999886    58888653 345566666644222244555666666743 32    11   11234579996521   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~  351 (367)
                      ...+++|++++++.|++++++.
T Consensus       393 ~~~~~eei~~~~~~l~~~l~~~  414 (447)
T 3h7f_A          393 RGFGDTEFTEVADIIATALATG  414 (447)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHSG
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            2257999999999999987754

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.73  E-value=1.3e-16  Score=162.25  Aligned_cols=268  Identities=17%  Similarity=0.130  Sum_probs=172.4

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCC----c-----CHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGV----L-----RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~----~-----d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      +.-.|++++.+|.|+..++...|+++++++++. .+.    +     |+++|++++++.++ .+.|.+++++++ |++|.
T Consensus       234 pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~  311 (715)
T 3n75_A          234 AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGL  311 (715)
T ss_dssp             TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSE
T ss_pred             CCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCc
Confidence            345677899999999999999999999998752 233    3     89999999987532 112457888888 89999


Q ss_pred             cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC---Cccee---eeccccccccCCcceeEEEecchhhhh
Q psy3048          99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSF---AFNAHKWLLTNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        99 i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~---~~D~~---~~~~hK~l~~p~g~g~l~~~~~~~~~~  172 (367)
                      +.|+++|+++|++++  +++|+||+++..+.+.... ...+.   .+|.+   +.++||++.++.++|++++++..... 
T Consensus       312 v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~-~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~-  387 (715)
T 3n75_A          312 LYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG-KCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEE-  387 (715)
T ss_dssp             EECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT-SSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHH-
T ss_pred             cCCHHHHHHHhCcCc--EEEccccccccccCCcccc-ccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHH-
Confidence            999999999999774  7999999987644443321 01121   25765   89999999999999999997641111 


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHH
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ  252 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  252 (367)
                      .+.....++.       +++++|                                      ....++-++++.+..+.-.
T Consensus       388 ~~~~~~~~~~-------STSpsy--------------------------------------~~~AsldaA~~~~~~~~g~  422 (715)
T 3n75_A          388 TFNEAYMMHT-------TTSPHY--------------------------------------GIVASTETAAAMMKGNAGK  422 (715)
T ss_dssp             HHHHHHHHTS-------CSSCCH--------------------------------------HHHHHHHHHHHHHSHHHHH
T ss_pred             HHHHHHHhhc-------CCCchH--------------------------------------HHHHHHHHHHHHHHhhccH
Confidence            1111111111       112222                                      1123444555555432225


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC------eEEeCCCC-----------------------------ceeEEEEEcCC----
Q psy3048         253 AYLRKHISLAKKFADLVEKDDR------FELVCPPS-----------------------------MGLVCFRLKGD----  293 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g------~~~~~~~~-----------------------------~~~v~f~~~~~----  293 (367)
                      +++++..+++++++++|+++++      ++++.+..                             ..-+++..++.    
T Consensus       423 ~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G  502 (715)
T 3n75_A          423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDG  502 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCC
Confidence            5778899999999999988754      56654321                             12233443321    


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                           .....++.+.|.+.| +.+..+...  ..+ + +.++..+++++++++++|.++.+...
T Consensus       503 ~~~~~Gi~g~~~~~~L~~~~-I~~E~~d~~--~vl-~-l~s~g~~~~~~~~L~~aL~~~~~~~~  561 (715)
T 3n75_A          503 TMSDFGIPASIVAKYLDEHG-IVVEKTGPY--NLL-F-LFSIGIDKTKALSLLRALTDFKRAFD  561 (715)
T ss_dssp             CBCSSCCCHHHHHHHHHHTT-CCCSEEETT--EEE-E-ECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHCC-CEEEecCCC--cEE-E-EeCCCCCHHHHHHHHHHHHHHHHHhh
Confidence                 112346777776666 444333222  223 2 35678899999999999999876543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.73  E-value=2.5e-16  Score=150.41  Aligned_cols=245  Identities=12%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             ceEEEecCCcchhHHHHH-HhCCc------------ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc
Q psy3048          30 RLVAYASDQSNSSVEKSA-IIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT   96 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~-~~~g~------------~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~   96 (367)
                      +-.|++...+|.+....+ ...+.            .+..++.+     |+++|++++++.+      .+|++++++|++
T Consensus       127 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~------~~v~~~~~~npt  195 (392)
T 3ruy_A          127 RAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPNT------AAFILEPIQGEA  195 (392)
T ss_dssp             CCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTTE------EEEEECSSBSTT
T ss_pred             CcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhccCe------EEEEEeCccCCC
Confidence            445666666765544433 32221            24444432     8999999997544      588888999999


Q ss_pred             cccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhh
Q psy3048          97 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLT  171 (367)
Q Consensus        97 G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~  171 (367)
                      |.+.|    +++|.++|++||+++++|++|+++............++ ..|+++++  |++.++ ..+|+++.++ +...
T Consensus       196 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~~~~~-~~~~  271 (392)
T 3ruy_A          196 GINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVFPISCAAANR-DILG  271 (392)
T ss_dssp             TSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEEEECH-HHHT
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChhhhEEEEECH-HHHh
Confidence            99988    99999999999999999999975432211111111222 34777775  987653 4588887743 3222


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL  251 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  251 (367)
                      . +.       ....     ...                               ++   ...+.+..+.++++.+..   
T Consensus       272 ~-~~-------~~~~-----~~~-------------------------------~~---~~~~~~~a~~~~l~~~~~---  301 (392)
T 3ruy_A          272 V-FE-------PGSH-----GST-------------------------------FG---GNPLACAVSIAALEVLEE---  301 (392)
T ss_dssp             T-CC-------TTSS-----CCS-------------------------------ST---TCHHHHHHHHHHHHHHHH---
T ss_pred             h-hc-------cCCc-----CCC-------------------------------CC---CCHHHHHHHHHHHHHHHh---
Confidence            1 10       0000     000                               00   011122333344443322   


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC--CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         252 QAYLRKHISLAKKFADLVEKD--DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~--~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      ++..++..++++++.+.|+++  +.+... ++..+.+.+.+++   ...++.+.|.++|+ .+.+.   +..++|+++ .
T Consensus       302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~---~~~~l~~~l~~~gi-~v~~~---~~~~iRi~~-~  372 (392)
T 3ruy_A          302 EKLTERSLQLGEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE---PARPYCEQLKAAGL-LCKET---HENVIRIAP-P  372 (392)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS---CSHHHHHHHHTTTE-ECCCB---TTTEEEECC-C
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc---hHHHHHHHHHHCCc-EEecC---CCCEEEEEC-C
Confidence            567778889999999999887  334433 2345566666653   35688899998884 34322   346999965 5


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~  348 (367)
                      ..++++|+++++++|++++
T Consensus       373 ~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          373 LVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            6778999999999999875

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.73  E-value=5.1e-17  Score=157.05  Aligned_cols=259  Identities=9%  Similarity=-0.029  Sum_probs=161.4

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEE-EecCCCcccccCChh---hHHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLV-ATLGTTGTCAFDNLE---ELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv-~~~~~t~~G~i~dl~---~I~~  107 (367)
                      .|++.+.+|..+...++..|++++.++.++++ +|+++|++++++..     +.+|+ +++++|+||.+.|.+   +|++
T Consensus       133 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~-----~~~v~~~~~~~NPtG~~~~~~~l~~l~~  206 (422)
T 3d6k_A          133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDPQ-----VKGMWTVPVFGNPTGVTFSEQTCRELAE  206 (422)
T ss_dssp             EEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTSTT-----EEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEeCCccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcCC-----CeEEEEcCCCCCCCCCCCCHHHHHHHHH
Confidence            57777889999999999999999999987665 99999999986421     23544 678999999997776   8888


Q ss_pred             HHh-hcCcEEEEecccccccccCh-----hhhhh--hCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcc
Q psy3048         108 ICQ-EYNIWLHVDAAYAGSALLLP-----EYAHL--KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRV  179 (367)
Q Consensus       108 l~~-~~gi~l~vD~a~~~~~~~~~-----~~~~~--~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~  179 (367)
                      +|+ +||+++++|++|+.+.+..+     .....  ..+....+++..+.+|++..+.++|+++.+ ++.+....... .
T Consensus       207 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~-~~l~~~l~~~~-~  284 (422)
T 3d6k_A          207 MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASS-KENIEWYASHA-N  284 (422)
T ss_dssp             CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECC-HHHHHHHHHHH-H
T ss_pred             HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeC-HHHHHHHHHHH-H
Confidence            898 99999999999974222111     11000  011222368888899995444568888875 33232211000 0


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-----HHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-----KGLQAY  254 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~~~  254 (367)
                      ...                                           ++   .   ..+...++...+..     +.+++.
T Consensus       285 ~~~-------------------------------------------~~---~---~~~~q~a~~~~l~~~~~~~~~~~~~  315 (422)
T 3d6k_A          285 VRG-------------------------------------------IG---P---NKLNQLAHAQFFGDVAGLKAHMLKH  315 (422)
T ss_dssp             HHC-------------------------------------------SC---C---CHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred             hhc-------------------------------------------CC---C---CHHHHHHHHHHHhCcchHHHHHHHH
Confidence            000                                           00   0   01222222222222     223444


Q ss_pred             HHHHHHHHHHHHHHh----cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eE-E-----CCeeEE
Q psy3048         255 LRKHISLAKKFADLV----EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-AS-F-----QGRPFL  323 (367)
Q Consensus       255 ~~~~~~la~~l~~~L----~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~-~-----~~~~~l  323 (367)
                      .++..+..+++.+.|    .+++++.+..|.....++++++..  ...++.+.|.++|+ .+.+ +. +     .+..++
T Consensus       316 ~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gV-~v~~~g~~f~~~~~~~~~~i  392 (422)
T 3d6k_A          316 AASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG--TASRVVELAKEAGI-ALTGAGSSFPLHNDPNNENI  392 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT--CHHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSCEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC--CHHHHHHHHHHCCe-EEEcCccccCCCCCCCCCeE
Confidence            444444444444444    445456765555556677777642  24567777888884 4444 22 2     135799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      |+++. . ++++++++++++|+++++++.
T Consensus       393 Ris~~-~-~~~e~i~~~~~~l~~~l~~~~  419 (422)
T 3d6k_A          393 RLAPS-L-PPVAELEVAMDGFATCVLMAA  419 (422)
T ss_dssp             EECCS-S-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence            99764 3 789999999999999988764

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.73  E-value=9.5e-17  Score=155.28  Aligned_cols=259  Identities=10%  Similarity=-0.048  Sum_probs=162.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHH-HHhhCCCccEEEEEe-cCCCcccccCChh---hH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK-EDLAKGLIPCCLVAT-LGTTGTCAFDNLE---EL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~-~~~t~~G~i~dl~---~I  105 (367)
                      -.|++.+.+|.++...++..|++++.+++++++ +|+++|+++++ +.+      .+|+++ +++|+||.+-|.+   +|
T Consensus       134 d~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~~~------~~v~~~p~~~NPtG~~~~~~~~~~l  206 (427)
T 3ppl_A          134 VKWICPVPGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKNPQV------KGMWVVPVFSNPTGFTVTEDVAKRL  206 (427)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTSTTE------EEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcCCC------eEEEECCCCCCCCCccCCHHHHHHH
Confidence            456677889999999999999999999997665 99999999984 233      355544 7899999997777   89


Q ss_pred             HHHH-hhcCcEEEEecccccccccChh-----hhhhh--CCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         106 GPIC-QEYNIWLHVDAAYAGSALLLPE-----YAHLK--RGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       106 ~~l~-~~~gi~l~vD~a~~~~~~~~~~-----~~~~~--~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      +++| ++||+++++|++|+.+.+....     .....  .+....++++.+.+|++..+.++|+++... ......... 
T Consensus       207 ~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~-~l~~~~~~~-  284 (427)
T 3ppl_A          207 SAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA-ENRKWYTGH-  284 (427)
T ss_dssp             HHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH-HHHHHHHHH-
T ss_pred             HHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH-HHHHHHHHH-
Confidence            9999 9999999999999875442211     11000  012234788889999976667788777642 222211000 


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-----HHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-----KGLQ  252 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~g~~  252 (367)
                      ..+...                                              ..   ..+...++...+..     +.++
T Consensus       285 ~~~~~~----------------------------------------------~~---~~~~q~~~~~~l~~~~~~~~~~~  315 (427)
T 3ppl_A          285 AGIRGI----------------------------------------------GP---NKVNQLAHARYFGDAEGVRAVMR  315 (427)
T ss_dssp             HHHHCS----------------------------------------------CC---CHHHHHHHHHHHCSHHHHHHHHH
T ss_pred             hhcccC----------------------------------------------CC---CHHHHHHHHHHHhChhhHHHHHH
Confidence            000000                                              00   01122222222211     2233


Q ss_pred             HHHHHH----HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eE-E-----CCee
Q psy3048         253 AYLRKH----ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-AS-F-----QGRP  321 (367)
Q Consensus       253 ~~~~~~----~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~-~-----~~~~  321 (367)
                      +..++.    ..+.+.+.+.+..++++.+..|.....++++++..  ...++.+.|.++|+ .+.+ +. +     .+..
T Consensus       316 ~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv-~v~~~g~~~~~~~~~~~~  392 (427)
T 3ppl_A          316 KHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--TASRVAELAKEAGI-ALTGAGSSYPLRQDPENK  392 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--CHHHHHHHHHHTTE-ECCCTTTTSGGGCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--hHHHHHHHHHHCCC-EEecCcCcCCCCCCCCCC
Confidence            333333    34444445555555567766665666677777642  35678888888884 4433 21 1     2467


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ++|+++.  ..++++++.++++|.++++++.
T Consensus       393 ~~Ris~~--~~~~~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          393 NLRLAPS--LPPVEELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             EEEECCS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999763  3379999999999999988753

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.73  E-value=1.4e-16  Score=157.48  Aligned_cols=269  Identities=12%  Similarity=0.009  Sum_probs=168.0

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|+++...|.++..++...|++++.+++++  ++.+|+++|++++++...+ ..+.+|++++++|+||.+   +++++|
T Consensus       182 d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v~s~~~l~~i  260 (498)
T 3ihj_A          182 TGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDV  260 (498)
T ss_dssp             EEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCcCCHHHHHHH
Confidence            4788889999999999999999999999864  5799999999999875321 124577888999999999   457789


Q ss_pred             HHHHhhcCcEEEEecccccccccCh----hhhhhhCCC-----CCcc-eeeeccccccc--cCCcceeEEE--ecchhhh
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP----EYAHLKRGL-----EYVD-SFAFNAHKWLL--TNHDCSAMWV--KNANHLT  171 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~----~~~~~~~~~-----~~~D-~~~~~~hK~l~--~p~g~g~l~~--~~~~~~~  171 (367)
                      +++|++||+++++|++|+.+.+...    .+......+     .... ++..+.+|.+.  ....+|++.+  .++....
T Consensus       261 ~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~  340 (498)
T 3ihj_A          261 IHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKG  340 (498)
T ss_dssp             HHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHH
T ss_pred             HHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHH
Confidence            9999999999999999987655321    111111000     0112 45567899995  4466777765  3443332


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH------
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS------  245 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  245 (367)
                      ........+.          .                                      +.......+..++..      
T Consensus       341 ~l~~~~~~~~----------~--------------------------------------~~~~~q~a~~~~l~~~~~g~~  372 (498)
T 3ihj_A          341 QLVKLLSVRL----------C--------------------------------------PPVSGQAAMDIVVNPPVAGEE  372 (498)
T ss_dssp             HHHHHHHHSC----------C--------------------------------------CCHHHHHHHHHHTCCCCTTST
T ss_pred             HHHHHHhccC----------C--------------------------------------CCHHHHHHHHHHhcCCccCcc
Confidence            2110000000          0                                      000001111111110      


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEE-EEcCCch----------HHHH--HHHHHhccCc
Q psy3048         246 ---YGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCF-RLKGDND----------LTNQ--LYERLMSHKQ  309 (367)
Q Consensus       246 ---~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f-~~~~~~~----------~~~~--l~~~L~~~g~  309 (367)
                         ...+...++.++..+.++++.+.|+++||+++..+ ..+++.| ++.....          ...+  +.+.|.+.|+
T Consensus       373 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p-~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI  451 (498)
T 3ihj_A          373 SFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPL-QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGI  451 (498)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC-CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCB
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCC-CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCE
Confidence               00122355667788999999999999999987644 4444443 4432111          1233  3444556775


Q ss_pred             EEEEEeEE---CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         310 IYIIKASF---QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       310 ~~~~~~~~---~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ....++.+   .+..++|+++.   .++++++.++++|.+++++..
T Consensus       452 ~v~pG~~f~~~~~~~~~Ris~~---~~~e~l~~~i~~L~~~~~~~~  494 (498)
T 3ihj_A          452 CVVPGSGFGQREGTYHFRMTIL---PPVEKLKTVLQKVKDFHINFL  494 (498)
T ss_dssp             CCEEGGGTCCCTTCCBEEEECC---SCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCcccCCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHHH
Confidence            44332221   34568999763   579999999999999988764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.72  E-value=6.9e-17  Score=157.22  Aligned_cols=260  Identities=13%  Similarity=0.017  Sum_probs=165.2

Q ss_pred             eEEEecCCcchhHHHHHHhCCcc----------eEEEecCCC--CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVP----------VRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~----------v~~v~~~~~--~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      -.|++++.+|.++..+++..|.+          ++.++++++  ...+++++     +.      +.+|++++++|++|.
T Consensus       156 d~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~v~l~~p~NPtG~  224 (449)
T 3qgu_A          156 PTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KR------TDIIFFCSPNNPTGA  224 (449)
T ss_dssp             SCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CC------CSEEEEESSCTTTCC
T ss_pred             CEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CC------CCEEEEeCCCCCCCC
Confidence            35667789999999999999988          999998643  34443221     12      347777899999999


Q ss_pred             cCC---hhhHHHHHhhcCcEEEEecccccccccChh-hhh-hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhh
Q psy3048          99 FDN---LEELGPICQEYNIWLHVDAAYAGSALLLPE-YAH-LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        99 i~d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~-~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~  172 (367)
                      +.+   +++|+++|++||+++++|++|+.+.+.... ... .+.+....++++.+.+|+++ .+.++|+++.++.. ...
T Consensus       225 ~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~-~~~  303 (449)
T 3qgu_A          225 AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKAL-KYA  303 (449)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTC-BCT
T ss_pred             cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHH-Hhh
Confidence            854   888889999999999999999875443210 000 01111234788999999997 55678888875431 110


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh---hHH
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY---GLK  249 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~  249 (367)
                      .   ..... .               .|...                    ........   ..+...+++..+   +.+
T Consensus       304 ~---~~~~~-~---------------~~~~~--------------------~~~~~~~~---~~~~~~a~~~~l~~~~~~  341 (449)
T 3qgu_A          304 N---GEPVH-A---------------DWNRV--------------------MTTCFNGA---SNIVQAGGLACLQPEGLK  341 (449)
T ss_dssp             T---SCBHH-H---------------HHHHH--------------------HHHSCCCC---CHHHHHHHHHHTSHHHHH
T ss_pred             h---hhhHH-H---------------HHHHH--------------------hhcccCCC---CHHHHHHHHHHHhhcCHH
Confidence            0   00000 0               00000                    00000001   112333333333   335


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEE
Q psy3048         250 GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRF  325 (367)
Q Consensus       250 g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi  325 (367)
                      .+++..++..++++++.+.|+++ |+++..+.....+.+.++  .....++.++|.++ | +++.++..   .+..++|+
T Consensus       342 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~g-I~v~pg~~f~~~~~~~iRi  417 (449)
T 3qgu_A          342 EMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFP--GKPSWDVFAEILERCN-IVTTPGSGYGPAGEGFVRA  417 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECT--TSCHHHHHHHHHHHHC-EECEEGGGGCGGGTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECC--CCCHHHHHHHHHHHCC-EEEecchHhCCCCCCeEEE
Confidence            67788888999999999999987 888776555666777765  22356888888876 6 45544322   23579999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         326 VVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       326 ~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ++.   .+++|+++++++|++++++-
T Consensus       418 s~~---~~~e~i~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          418 SAF---GSRENILEAVRRFKEAYGKR  440 (449)
T ss_dssp             ECC---SCHHHHHHHHHHHHHHHC--
T ss_pred             Eec---CCHHHHHHHHHHHHHHHHhc
Confidence            743   38999999999999987653

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.72  E-value=1e-16  Score=153.48  Aligned_cols=248  Identities=14%  Similarity=0.134  Sum_probs=158.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.+|+.+...|.+...++...|.+            ++.++.+     |+++|++++++.+      .+|++++++|++|
T Consensus       129 ~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~------~~v~~~~~~nptG  197 (397)
T 2ord_A          129 YRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDV------CAVFLEPIQGESG  197 (397)
T ss_dssp             CEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTE------EEEEECSEECTTT
T ss_pred             ceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCe------EEEEEecccCCCC
Confidence            456666666777777677777765            6667653     8999999987543      5888899999999


Q ss_pred             c----cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhh
Q psy3048          98 A----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT  173 (367)
Q Consensus        98 ~----i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~  173 (367)
                      .    .+++++|.++|++||+++++|++|++.............+. ..|++++  +|+++++.++|+++.+++. .  .
T Consensus       198 ~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~~~~~~-~--~  271 (397)
T 2ord_A          198 IVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVIVNERA-N--V  271 (397)
T ss_dssp             CEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECSTT-C--C
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEEEEEchHh-c--c
Confidence            8    37899999999999999999999975322211111111122 2476654  7999977779998886531 1  1


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  253 (367)
                      +.       ....     ...|                               .   ...+.+..+.++++.+..   ++
T Consensus       272 l~-------~~~~-----~~~~-------------------------------~---~~~~~~~a~~~~l~~~~~---~~  302 (397)
T 2ord_A          272 LE-------PGDH-----GTTF-------------------------------G---GNPLACRAGVTVIKELTK---EG  302 (397)
T ss_dssp             CC-------TTSS-----CCSS-------------------------------T---TCHHHHHHHHHHHHHHTS---TT
T ss_pred             cC-------CCCc-----CCCC-------------------------------C---CCHHHHHHHHHHHHHHHh---CC
Confidence            10       0000     0000                               0   011222334445554433   34


Q ss_pred             HHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         254 YLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      ..++..++++++.+.|+++    +.+... ++..+.+.+.++. .....++.+.|.++|+ .+.+.   ++.++|+++ .
T Consensus       303 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~l~~~l~~~gi-~v~~~---~~~~iRis~-~  375 (397)
T 2ord_A          303 FLEEVEEKGNYLMKKLQEMKEEYDVVADV-RGMGLMIGIQFRE-EVSNREVATKCFENKL-LVVPA---GNNTIRFLP-P  375 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECT-TSCHHHHHHHHHHTTE-ECEEE---TTTEEEECC-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCceEEE-EEEeEEEEEEECC-hHHHHHHHHHHHHCCC-EEccC---CCCEEEEEC-C
Confidence            5667778888888888664    322211 2334566777754 2235688889988884 34333   356899965 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~  350 (367)
                      ..++++|+++++++|++++++
T Consensus       376 ~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          376 LTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhh
Confidence            567899999999999998764

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.71  E-value=2.3e-16  Score=152.28  Aligned_cols=243  Identities=13%  Similarity=0.077  Sum_probs=161.8

Q ss_pred             eEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+....+..    .|+++++++.+     |+++|++++++.+      .+|++..++|++|.+.|+++|+
T Consensus       121 d~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~~~t------~~v~le~p~NptG~~~~l~~i~  189 (414)
T 3ndn_A          121 DRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-----DLSQWERALSVPT------QAVFFETPSNPMQSLVDIAAVT  189 (414)
T ss_dssp             CEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHTSSCC------SEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCccccHHHHH
Confidence            3566677889887777654    89999999875     8999999997655      3788899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++||+++++|++|+.+.+..+.    ..+   +|+++.+.+|+++++..  +|+++.++. .+...+.......   
T Consensus       190 ~la~~~g~~livDe~~~~~~~~~~~----~~g---~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~---  258 (414)
T 3ndn_A          190 ELAHAAGAKVVLDNVFATPLLQQGF----PLG---VDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHT---  258 (414)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHCCCG----GGT---CSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHH---
T ss_pred             HHHHHcCCEEEEECCCcccccCCch----hcC---CCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHc---
Confidence            9999999999999999865433221    113   49999999999976432  677776443 2221110000000   


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                    +..+..+..+.+++  +.+.+..++++..+++++
T Consensus       259 ----------------------------------------------g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~  290 (414)
T 3ndn_A          259 ----------------------------------------------GPAMSAFNAWVLLK--GLETLAIRVQHSNASAQR  290 (414)
T ss_dssp             ----------------------------------------------CCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence                                                          00011233344333  455677788888999999


Q ss_pred             HHHHhcCCCCeEEe-CCC----------------CceeEEEEEcCC----chHHHHHHHHHhccCcEE---------EEE
Q psy3048         265 FADLVEKDDRFELV-CPP----------------SMGLVCFRLKGD----NDLTNQLYERLMSHKQIY---------IIK  314 (367)
Q Consensus       265 l~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~----~~~~~~l~~~L~~~g~~~---------~~~  314 (367)
                      +.+.|+++|++.-+ .|.                ..++++|.+++.    .....++.+.|...+...         ..|
T Consensus       291 l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p  370 (414)
T 3ndn_A          291 IAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHP  370 (414)
T ss_dssp             HHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECG
T ss_pred             HHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCc
Confidence            99999999887643 331                235788988763    334567777776444110         000


Q ss_pred             eE--------------ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         315 AS--------------FQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       315 ~~--------------~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      ..              -..+.++|+|+.     .||++.+++.|++.+
T Consensus       371 ~~~~~~~~~~~~~~~~g~~~~~iRlsvG-----~e~~~dli~dl~~al  413 (414)
T 3ndn_A          371 ATTTHRAMGPEGRAAIGLGDGVVRISVG-----LEDTDDLIADIDRAL  413 (414)
T ss_dssp             GGTTTCTTHHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCCCeEEEEeC-----cCCHHHHHHHHHHhh
Confidence            00              012458999764     367788888887764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.71  E-value=6.2e-16  Score=147.98  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=96.6

Q ss_pred             ceEEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..|.+....    ++..|++++.++..     |+++|++++++.+      .+|++++++|++|.+.|+++|
T Consensus        98 gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~------~~v~~~~~~nptG~~~~l~~i  166 (389)
T 3acz_A           98 GDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS-----DVEKVKAAWKPNT------KMVYLESPANPTCKVSDIKGI  166 (389)
T ss_dssp             TCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT-----CHHHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCCCCCeecCHHHH
Confidence            34577778899987666    46689999999863     8999999987654      488889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEec
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKN  166 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~  166 (367)
                      .++|++||+++++|++|+.+....+ ..   .   .+|+++.+.||++++|.+  +|+++.++
T Consensus       167 ~~~~~~~~~~livD~~~~~~~~~~~-~~---~---~~di~~~S~sK~~~~~~~~~~G~v~~~~  222 (389)
T 3acz_A          167 AVVCHERGARLVVDATFTSPCFLKP-LE---L---GADIALHSVSKYINGHGDVIGGVSSAKT  222 (389)
T ss_dssp             HHHHHHHTCEEEEECTTTCTTTCCG-GG---T---TCSEEEEETTTTTTCSSCCCCEEEEESS
T ss_pred             HHHHHHcCCEEEEECCCccccccCc-cc---c---CCeEEEECChhhccCCCCceeEEEEECc
Confidence            9999999999999999987643211 11   1   359999999999999877  68888765

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.71  E-value=3.2e-16  Score=148.55  Aligned_cols=211  Identities=13%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          65 LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        65 ~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      +|+++|++++++.+      .+|++++++|++|.+.|    +++|.++|++||+++++|++|+++............+. 
T Consensus       160 ~d~~~l~~~l~~~~------~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-  232 (375)
T 2eh6_A          160 NDIDSVYKLLDEET------AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL-  232 (375)
T ss_dssp             TCHHHHHTTCCTTE------EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred             chHHHHHHHhcCCe------EEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-
Confidence            48999999886543      57888889999999988    99999999999999999999985322111111111121 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|+++++  |++++|.++|++++++ +.... +.  ...  ..                                    
T Consensus       233 ~~d~~s~S--K~~~~g~~~G~~~~~~-~~~~~-~~--~~~--~~------------------------------------  268 (375)
T 2eh6_A          233 KPDVIALA--KGLGGGVPIGAILARE-EVAQS-FT--PGS--HG------------------------------------  268 (375)
T ss_dssp             CCSEEEEC--GGGGTTSCCEEEEEEH-HHHTT-CC--TTS--CC------------------------------------
T ss_pred             CCCEEEEc--ccccCCCCeEEEEEcH-HHHhh-hc--CCC--CC------------------------------------
Confidence            35888766  9988888999999865 32221 11  000  00                                    


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL  300 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l  300 (367)
                         ..+.   ...+.+..+.++++...     +..++..++++++.+.|++++...+  ++..+.+.+.++. +  ..++
T Consensus       269 ---~~~~---~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~-~--~~~~  332 (375)
T 2eh6_A          269 ---STFG---GNPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGKV--KGRGLMLGLELER-E--CKDY  332 (375)
T ss_dssp             ---CSST---TCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSEE--EEETTEEEEECSS-C--CHHH
T ss_pred             ---CCCC---CCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCc--eEEEEEEEEEEcC-c--HHHH
Confidence               0000   01111122223333321     6677888999999999988754222  2344566777653 2  4678


Q ss_pred             HHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       301 ~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      .+.|.++|+ .+.+.   +..++|+++ +..++++|+++++++|+++
T Consensus       333 ~~~l~~~gi-~~~~~---~~~~iRi~~-~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          333 VLKALEKGL-LINCT---AGKVLRFLP-PLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             HHHHHHTTE-ECEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC-EEecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHh
Confidence            888888884 34332   356899965 4577899999999999875

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.71  E-value=1.6e-16  Score=153.31  Aligned_cols=244  Identities=14%  Similarity=0.128  Sum_probs=159.2

Q ss_pred             eEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..|.+....+    ...|+++++++.+     |+++|++++++++      .+|++.+++|++|.+.|+++|+
T Consensus       122 d~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~~~t------klV~~e~~~NptG~v~dl~~I~  190 (415)
T 2fq6_A          122 DHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPNT------KIVFLESPGSITMEVHDVPAIV  190 (415)
T ss_dssp             CEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhccCC------cEEEEECCCCCCCEeecHHHHH
Confidence            35666788998877654    3468999999764     8899999997765      4888899999999999999999


Q ss_pred             HHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccc
Q psy3048         107 PICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       107 ~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      ++||+  ||+++++|++|+.+.... ...   .+   +|+++.++||+++++.+  .|+++.++ ..+.....    +..
T Consensus       191 ~la~~~~~g~~livD~a~a~~~~~~-p~~---~g---~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~~~l~~----~~~  258 (415)
T 2fq6_A          191 AAVRSVVPDAIIMIDNTWAAGVLFK-ALD---FG---IDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLRE----NAY  258 (415)
T ss_dssp             HHHHHHCTTCEEEEECTTTTTTSSC-GGG---GT---CSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHH----HHH
T ss_pred             HHHHhhcCCCEEEEECCCcccccCC-ccc---cC---CeEEEEeCccccCCCCCceEEEEEeCH-HHHHHHHH----HHH
Confidence            99999  999999999998653322 111   13   49999999999987754  57777654 33322110    000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ..                                          ...    ......+..++  +.+.+..++++..+++
T Consensus       259 ~~------------------------------------------G~~----~~~~~a~~~~~--~l~~l~~r~~~~~~n~  290 (415)
T 2fq6_A          259 LM------------------------------------------GQM----VDADTAYITSR--GLRTLGVRLRQHHESS  290 (415)
T ss_dssp             HT------------------------------------------TCC----CCHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             hc------------------------------------------CCC----CCHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence            00                                          000    01122233222  3345566777788888


Q ss_pred             HHHHHHhcCCCCeEE-eCCC----------------CceeEEEEEcCC--chHHHHHHHHHhccC------c---EEEE-
Q psy3048         263 KKFADLVEKDDRFEL-VCPP----------------SMGLVCFRLKGD--NDLTNQLYERLMSHK------Q---IYII-  313 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~-~~~~----------------~~~~v~f~~~~~--~~~~~~l~~~L~~~g------~---~~~~-  313 (367)
                      +++.+.|++.|.+.- ..|.                ..++++|.+++.  ......+.+.|...+      .   .... 
T Consensus       291 ~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~  370 (415)
T 2fq6_A          291 LKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILAN  370 (415)
T ss_dssp             HHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEE
T ss_pred             HHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEec
Confidence            999999988877643 2221                357889998752  234456666553222      0   1111 


Q ss_pred             -E---eE------E-CCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         314 -K---AS------F-QGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       314 -~---~~------~-~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                       |   +.      . ...+.+|+|+ ...+++++|+.+.++|++
T Consensus       371 ~p~~~s~~~~~~~~g~~~~~iRlS~-G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          371 QPEHIAAIRPQGEIDFSGTLIRLHI-GLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             CHHHHHTTCTTCCCCCCSCEEEEEC-CSSCHHHHHHHHHHHHHT
T ss_pred             CCCccccccchhhcCCCCCEEEEEe-cCCCHHHHHHHHHHHHHh
Confidence             1   00      0 1246999987 577788888888888864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.71  E-value=1.6e-16  Score=152.28  Aligned_cols=243  Identities=16%  Similarity=0.203  Sum_probs=155.6

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|+++...|.+....    ++..|++++.++++     | ++|++++++.+      .+|++.+++|++|.+.|+++|.+
T Consensus        95 ~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d-~~l~~~i~~~t------~lv~~~~~~nptG~~~~l~~i~~  162 (393)
T 1n8p_A           95 HAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL-----L-NDLPQLIKENT------KLVWIETPTNPTLKVTDIQKVAD  162 (393)
T ss_dssp             EEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH-----H-HHHHHHSCSSE------EEEEECSSCTTTCCCCCHHHHHH
T ss_pred             EEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC-----h-HHHHHhcccCc------eEEEEECCCCCcceecCHHHHHH
Confidence            456666788865553    45579999999875     7 88988886544      58888999999999999999999


Q ss_pred             HHhhc----CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--c-eeEEEecchhhhhhccCCccc
Q psy3048         108 ICQEY----NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--C-SAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       108 l~~~~----gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~-g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      +|++|    |+++++|++|+.+.+. +...   .+   +|+++.++||+++. +|  . |+++.+++..+....... ..
T Consensus       163 la~~~~~~~~~~livD~a~~~~~~~-~~~~---~~---~di~~~S~sK~~g~-~G~rigG~~~~~~~~~~~~l~~~~-~~  233 (393)
T 1n8p_A          163 LIKKHAAGQDVILVVDNTFLSPYIS-NPLN---FG---ADIVVHSATKYING-HSDVVLGVLATNNKPLYERLQFLQ-NA  233 (393)
T ss_dssp             HHHHHTTTTTCEEEEECTTTHHHHC-CGGG---GT---CSEEEEETTTTTTC-SSCCCCEEEEESCHHHHHHHHHHH-HH
T ss_pred             HHHHhCCCCCCEEEEeCCccccccC-CHHH---cC---CeEEEEECcccccC-CCCceeEEEEeCCHHHHHHHHHHH-Hh
Confidence            99999    9999999999877653 2111   12   59999999999874 45  5 776665444333221000 00


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      .  +                                           ..    ......++.+..  .+.+....++..+
T Consensus       234 ~--g-------------------------------------------~~----~~~~~~~~~~~~--l~~~~~~~~~~~~  262 (393)
T 1n8p_A          234 I--G-------------------------------------------AI----PSPFDAWLTHRG--LKTLHLRVRQAAL  262 (393)
T ss_dssp             H--C-------------------------------------------CC----CCHHHHHHHHHH--HTTHHHHHHHHHH
T ss_pred             c--C-------------------------------------------CC----CCHHHHHHHHhc--cchHHHHHHHHHH
Confidence            0  0                                           00    011222222222  2334556666777


Q ss_pred             HHHHHHHHhcCCCC-eE-EeCC-----C------------C-ceeEEEEEcCCchHHHHHHHHHhccCcEE---------
Q psy3048         261 LAKKFADLVEKDDR-FE-LVCP-----P------------S-MGLVCFRLKGDNDLTNQLYERLMSHKQIY---------  311 (367)
Q Consensus       261 la~~l~~~L~~~~g-~~-~~~~-----~------------~-~~~v~f~~~~~~~~~~~l~~~L~~~g~~~---------  311 (367)
                      .++++.+.|++.+. +. +..|     +            . .++++|.+++.......+.+.|...+...         
T Consensus       263 ~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~  342 (393)
T 1n8p_A          263 SANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLL  342 (393)
T ss_dssp             HHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEE
T ss_pred             HHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCccee
Confidence            88888888888765 54 2222     1            2 56889998753234556777664322100         


Q ss_pred             EEE--eEE----------CC--eeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         312 IIK--ASF----------QG--RPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       312 ~~~--~~~----------~~--~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      ..+  ..+          .|  ++.+|+|+ ...+++++|+.+.++|+++
T Consensus       343 ~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~-g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          343 EVPAVMTHGGIPKEAREASGVFDDLVRISV-GIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             ECTTTTTSCSSCTTTTTTTSCCTTEEEEEC-CSSCHHHHHHHHHHHHHHH
T ss_pred             eccccccccccCHHHHHhcCCCCCeEEEEE-ccCCHHHHHHHHHHHHHHh
Confidence            100  000          01  46899986 5788899999999998875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.70  E-value=2.8e-16  Score=147.68  Aligned_cols=243  Identities=11%  Similarity=0.025  Sum_probs=160.1

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEec-CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      .|+++..+|.++...++..|++++.++. ++...+++        +.+      .+|++++++|++|.+.|+++|.++++
T Consensus        91 ~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~--------~~~------~~v~i~~p~nptG~~~~~~~l~~l~~  156 (350)
T 3fkd_A           91 RSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF--------SNM------DFCWLCNPNNPDGRLLQRTEILRLLN  156 (350)
T ss_dssp             EEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC--------TTC------SEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc--------CCC------CEEEEeCCCCCcCCCCCHHHHHHHHH
Confidence            5667778999999999999999999998 65445554        223      47788999999999999999999999


Q ss_pred             hcC-cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYN-IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~g-i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      .++ .++++|++|+.+........... +....++++.+.+|+++ .+.++|+++. +++...........         
T Consensus       157 ~~~~~~li~Dea~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~---------  225 (350)
T 3fkd_A          157 DHPDTTFVLDQSYVSFTTEEVIRPADI-KGRKNLVMVYSFSHAYGIPGLRIGYIVA-NKDFMKRVAAFSTP---------  225 (350)
T ss_dssp             HCTTSEEEEECTTTTSCSSCCCCGGGG-TTCSSEEEEEESHHHHSCGGGCCEEEEC-CHHHHHHHHTTCCT---------
T ss_pred             hCCCCEEEEECchhhhccCcchhhHHh-hcCCCEEEEecCchhccCcchheEeEEe-CHHHHHHHHHhCCC---------
Confidence            876 79999999976543221111111 11123578889999997 4467888887 44433322111000         


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~  267 (367)
                            +                               .      ...+...++...+.... +.+..++..++++++.+
T Consensus       226 ------~-------------------------------~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  262 (350)
T 3fkd_A          226 ------W-------------------------------A------VNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFIT  262 (350)
T ss_dssp             ------T-------------------------------C------SCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHH
T ss_pred             ------C-------------------------------C------CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence                  0                               0      00122222222222111 23333444488889999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeE-EC--CeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKAS-FQ--GRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~-~~--~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|+++||+++. ++..+.+.++++..  ...++.+.|.+ +|+ .+.++. +.  +..++|+++.    +++|+++++++
T Consensus       263 ~L~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~L~~~~gi-~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~a  334 (350)
T 3fkd_A          263 ALNRLDGVEVH-PSGTTFFLLRLKKG--TAAELKKYMLEEYNM-LIRDASNFRGLDESYVRITTQ----RPAQNQLFIKA  334 (350)
T ss_dssp             HHHHSTTEEEC-CCSSSEEEEEESSS--CHHHHHHHHHHTTCE-ECEECTTSTTCCTTEEEEECC----CHHHHHHHHHH
T ss_pred             HHhcCCCcEEC-CCCCcEEEEECCCC--CHHHHHHHHHHHCCE-EEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHH
Confidence            99888899875 45556667777652  46789999988 774 444432 21  2569999753    68999999999


Q ss_pred             HHHHHHH
Q psy3048         344 ISHQSSE  350 (367)
Q Consensus       344 l~~~~~~  350 (367)
                      |+++.++
T Consensus       335 l~~~~~~  341 (350)
T 3fkd_A          335 LETFLEK  341 (350)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            9998664

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.70  E-value=2.9e-15  Score=144.46  Aligned_cols=263  Identities=13%  Similarity=0.071  Sum_probs=154.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcc-------------eEEEecCC-----CCCcCHHHHHHHHHHHhhCCCccEEEEEec
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVP-------------VRQLRSDD-----NGVLRGDALLTAVKEDLAKGLIPCCLVATL   91 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~-------------v~~v~~~~-----~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~   91 (367)
                      +.+|+.+...|.+...++...|.+             ++.++.+.     ++.+|+++|++++++.. .+..+.+|+++.
T Consensus       129 ~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p  207 (426)
T 1sff_A          129 SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEP  207 (426)
T ss_dssp             CEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECS
T ss_pred             CeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEec
Confidence            345555666666666666666543             67777653     24579999999997410 001134555543


Q ss_pred             CCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecc
Q psy3048          92 GTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        92 ~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      ..+++|.+.+    +++|.++|++||+++++|++|+++............++ ..|++  +.+|+++.+..+|+++.++ 
T Consensus       208 ~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG~~~~~~-  283 (426)
T 1sff_A          208 VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLAGVTGRA-  283 (426)
T ss_dssp             BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCEEEEEEH-
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccCCCceEEEEEcH-
Confidence            3334997777    99999999999999999999985322111111111122 24665  5569998544479988864 


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG  247 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (367)
                      +.... +.  .     ...     ...+                                  ....+....+.++++.+.
T Consensus       284 ~~~~~-l~--~-----~~~-----~~~~----------------------------------~~~~~~~~a~~aal~~~~  316 (426)
T 1sff_A          284 EVMDA-VA--P-----GGL-----GGTY----------------------------------AGNPIACVAALEVLKVFE  316 (426)
T ss_dssp             HHHTT-SC--T-----TSB-----CCSS----------------------------------SSCHHHHHHHHHHHHHHH
T ss_pred             HHHhh-hc--c-----CCc-----CcCC----------------------------------CCCHHHHHHHHHHHHHHH
Confidence            32321 11  0     000     0000                                  011122234444555443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcC-------CchHHHHHHHHHhccCcEEEEEeE
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKG-------DNDLTNQLYERLMSHKQIYIIKAS  316 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g~~~~~~~~  316 (367)
                      .+   ++.++..++++++.++|++    ++.+... ++..+.+.+.+..       ......++.+.|.++|+ .+.+..
T Consensus       317 ~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi-~v~~~~  391 (426)
T 1sff_A          317 QE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGL-ILLSCG  391 (426)
T ss_dssp             HT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTE-ECEEES
T ss_pred             hc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCc-EEecCC
Confidence            32   3455667777777777765    4433322 2335667777742       12345678889988884 444332


Q ss_pred             ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 ~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      . ...++|+++ ...++++|+++++++|+++++++
T Consensus       392 ~-~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~  424 (426)
T 1sff_A          392 P-YYNVLRILV-PLTIEDAQIRQGLEIISQCFDEA  424 (426)
T ss_dssp             T-TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHH
Confidence            2 246899965 45778999999999999998765

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.69  E-value=3.3e-16  Score=152.12  Aligned_cols=266  Identities=14%  Similarity=0.063  Sum_probs=153.3

Q ss_pred             EEEecCCcchhHHHHH------HhCCcceEEEecCC-C----CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC
Q psy3048          32 VAYASDQSNSSVEKSA------IIGDVPVRQLRSDD-N----GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD  100 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~------~~~g~~v~~v~~~~-~----~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~  100 (367)
                      +|++...+|......+      ...|..++.++.+. +    +.+|+++|+++++....   .+.+|++++++|++|.+.
T Consensus       147 vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~---~~~~v~i~~p~nptG~~~  223 (444)
T 3if2_A          147 ILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG---RIGAICCSRPTNPTGNVL  223 (444)
T ss_dssp             EEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT---CEEEEEEESSCTTTCCCC
T ss_pred             EEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC---CceEEEeCCCCCCCCCcC
Confidence            4444466777665533      23567788888764 2    47999999998543221   135788889999999998


Q ss_pred             C---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         101 N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       101 d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      |   +++|+++|++||+++|+|++|+.+.... .+..........++++.+.+|++..+.++|+++.. +..........
T Consensus       224 ~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~-~~l~~~~~~~~  301 (444)
T 3if2_A          224 TDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVAD-AKVIEAVSAMN  301 (444)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECCCCCccccc-ccccccccCCCCEEEEechhhccCCCCceEEEEEC-HHHHHHHHHHH
Confidence            8   8899999999999999999997421110 00000011123478899999985555667776653 22222110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHH-HH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQA-YL  255 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~~  255 (367)
                      ..+-..                                               +..+....+...+..... ....+ ..
T Consensus       302 ~~~~~~-----------------------------------------------~~~~~~~a~~~~l~~~~~~~~~~~~~~  334 (444)
T 3if2_A          302 AVVNLA-----------------------------------------------PTRFGAAIATPLVANDRIKQLSDNEIK  334 (444)
T ss_dssp             HHHHSS-----------------------------------------------CCCHHHHHHHHHHHTSHHHHHHHHTHH
T ss_pred             HhccCC-----------------------------------------------CChHHHHHHHHHHHcCchhHHHHHHHH
Confidence            000000                                               000111122222222111 11111 23


Q ss_pred             HHHHHHHHHHHHHhcC-CC--CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-----------Cee
Q psy3048         256 RKHISLAKKFADLVEK-DD--RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-----------GRP  321 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~-~~--g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----------~~~  321 (367)
                      ++..+..+++.+.|.+ ++  ++.+..+.....+++.++.......++.+.|.++|+ .+.++...           +..
T Consensus       335 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi-~v~~g~~~~~~~~~~~~~~~~~  413 (444)
T 3if2_A          335 PFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGT-LIVPSEYFFPGVDVSDYQHAHE  413 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTE-ECEEGGGSCTTCCCTTCSGGGS
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCe-EEecchhhcCCCCCcccccCCC
Confidence            3344444445444433 23  567665555556667775422235688888988884 44443221           125


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      ++|+++..   +++||++++++|+++++++..
T Consensus       414 ~iRis~~~---~~e~i~~~l~~l~~~~~~~~~  442 (444)
T 3if2_A          414 CIRMSIAA---DEQTLIDGIKVIGEVVRELYD  442 (444)
T ss_dssp             EEEEESSS---CHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeC---CHHHHHHHHHHHHHHHHHHHc
Confidence            89997643   899999999999999887653

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.69  E-value=9.3e-16  Score=148.19  Aligned_cols=250  Identities=14%  Similarity=0.119  Sum_probs=154.1

Q ss_pred             eEEEecCCcchhHHHHHHhCCcc------------eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~------------v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      .+|+.+...|.+...++...|.+            +..++.+     |+++|++++++.+      .+|+++.++++.|.
T Consensus       148 ~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~------~~vi~~p~~~~gG~  216 (420)
T 2pb2_A          148 KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHT------CAVVVEPIQGEGGV  216 (420)
T ss_dssp             EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTE------EEEEECSEETTTTS
T ss_pred             EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccCc------eEEEEeCCcCCCCe
Confidence            45555566666666666655543            5555542     8999999987543      47777776666675


Q ss_pred             ----cCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhc
Q psy3048          99 ----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTF  174 (367)
Q Consensus        99 ----i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~  174 (367)
                          .+++++|.++|++||+++++|++|+++......+.....++ ..|++++  +|+++++..+|+++.+++ ... .+
T Consensus       217 ~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit~--sK~l~~G~~iG~~~~~~~-l~~-~l  291 (420)
T 2pb2_A          217 QAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILTS--AKALGGGFPVSAMLTTQE-IAS-AF  291 (420)
T ss_dssp             EECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECHH-HHT-TC
T ss_pred             ecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEEe--cccccCCCceEEEEEhHH-HHH-hh
Confidence                37899999999999999999999965432211111111222 3487754  799997677999888643 222 11


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAY  254 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  254 (367)
                      .  .     ...     .                               ..+   .+..+.+..+.++|+.+..   +++
T Consensus       292 ~--~-----~~~-----~-------------------------------~t~---~~~~~~~aa~~a~L~~~~~---~~~  322 (420)
T 2pb2_A          292 H--V-----GSH-----G-------------------------------STY---GGNPLACAVAGAAFDIINT---PEV  322 (420)
T ss_dssp             C----------------C-------------------------------CEE---CCCHHHHHHHHHHHHHHSS---HHH
T ss_pred             c--C-----CCc-----C-------------------------------ccc---CcCHHHHHHHHHHHHHHHh---ccH
Confidence            1  0     000     0                               000   0111222344445554433   356


Q ss_pred             HHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         255 LRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      .++..++.+++.+.|+++    +.+... ++..+++.+.++... ....++.+.|.++|++ +.+.   +..++|+++ .
T Consensus       323 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~-v~~~---~~~~iRl~~-~  396 (420)
T 2pb2_A          323 LQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKYKGRARDFLYAGAEAGVM-VLNA---GADVMRFAP-S  396 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGGTTCHHHHHHHHHHTTEE-CEES---STTEEEECC-C
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCchHHHHHHHHHHHHCCCE-EEeC---CCCEEEEEC-C
Confidence            677788888888888764    333322 233456667765311 1356888999988843 4332   356899965 4


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..++++|++++++.|+++++++
T Consensus       397 ~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          397 LVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999998765

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.69  E-value=9.6e-16  Score=146.84  Aligned_cols=253  Identities=13%  Similarity=0.120  Sum_probs=154.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCC------------cceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.+|+.+...|.....+....+            .++..++.     .|+++|++++++.+      .+|+++ +++++|
T Consensus       129 ~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~------~~v~~~-p~np~g  196 (406)
T 4adb_A          129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDDST------CAVIVE-PIQGEG  196 (406)
T ss_dssp             CEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCSTTE------EEEEEC-SEETTT
T ss_pred             cEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcCCe------EEEEEe-CCcCCC
Confidence            5667777666666555555444            24444443     38999999887543      467777 788888


Q ss_pred             cc-----CChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhh
Q psy3048          98 AF-----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        98 ~i-----~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~  172 (367)
                      .+     +++++|.++|++||+++++|++|+++......+.....++ ..|++++  +|+++++..+|+++.++ +....
T Consensus       197 ~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~~~~~-~~~~~  272 (406)
T 4adb_A          197 GVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFPVGALLATE-ECARV  272 (406)
T ss_dssp             TSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEEECH-HHHHT
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEEEEcH-HHHhh
Confidence            54     5799999999999999999999975433221111111222 2477755  99999555688877743 32221


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHH
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ  252 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  252 (367)
                       +..   .. ..        ..+                               .   ...+.+..+.++++.+..   +
T Consensus       273 -~~~---~~-~~--------~~~-------------------------------~---~~~~~~~a~~~~l~~~~~---~  302 (406)
T 4adb_A          273 -MTV---GT-HG--------TTY-------------------------------G---GNPLASAVAGKVLELINT---P  302 (406)
T ss_dssp             -CCT---TS-SC--------CSS-------------------------------T---TCHHHHHHHHHHHHHHSS---H
T ss_pred             -hcc---CC-cC--------CCC-------------------------------C---CCHHHHHHHHHHHHHHHh---c
Confidence             100   00 00        000                               0   011122333344443322   5


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC-eEEeC--CCCceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEec
Q psy3048         253 AYLRKHISLAKKFADLVEKDDR-FELVC--PPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVT  328 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g-~~~~~--~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~  328 (367)
                      +..++..++++++.+.|+++.. +.++.  +.....+.+.++... ....++.+.|.++|+. +.+   .+..++|+++ 
T Consensus       303 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~-v~~---~~~~~iRi~~-  377 (406)
T 4adb_A          303 EMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVM-VLI---AGGNVVRFAP-  377 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEE-CEE---SSTTEEEECC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcE-Eee---cCCCeEEEEC-
Confidence            6667788888888888876421 11111  112345667665421 1367899999999843 333   3456999954 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         329 SPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +..++++|+++++++|+++++++..
T Consensus       378 ~~~~~~e~i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          378 ALNVSEEEVTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            5677899999999999999988764

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.69  E-value=4.9e-16  Score=145.29  Aligned_cols=236  Identities=8%  Similarity=-0.030  Sum_probs=159.6

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      -.|+++ .+|.++...++..|++++.++.++++.+|+++|     +.      +.+|++++++|++|.+.|.+++.++++
T Consensus        98 d~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~~------~~~v~l~~p~nptG~~~~~~~l~~l~~  165 (335)
T 1uu1_A           98 RSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV-----GE------GDVVFIPNPNNPTGHVFEREEIERILK  165 (335)
T ss_dssp             EEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC-----CT------TEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc-----CC------CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            356777 899999999988999999999877778898887     22      357777999999999999999999999


Q ss_pred             hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         111 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       111 ~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      ..| ++++|++|+.+... +.... . +....++++.+.+|+++.| ..+|+++.+ ++...........|         
T Consensus       166 ~~~-~li~De~~~~~~~~-~~~~~-~-~~~~~~i~~~s~sK~~g~~G~r~G~~~~~-~~~~~~l~~~~~~~---------  231 (335)
T 1uu1_A          166 TGA-FVALDEAYYEFHGE-SYVDF-L-KKYENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVRLPF---------  231 (335)
T ss_dssp             TTC-EEEEECTTHHHHCC-CCGGG-G-GTCSSEEEEEESTTTTTCGGGCCEEEEEC-HHHHHHHHHHSCTT---------
T ss_pred             hCC-EEEEECcchhhcch-hHHHH-h-hhCCCEEEEecchhhcCCcccCeEEEEeC-HHHHHHHHHhcCCC---------
Confidence            989 99999999854321 10110 1 1112378889999998633 457898884 33332211100000         


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                        .                                      .+.+....+..+++.  .+.+++..++..++++++.+.|
T Consensus       232 --~--------------------------------------~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L  269 (335)
T 1uu1_A          232 --N--------------------------------------VSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSAL  269 (335)
T ss_dssp             --C--------------------------------------SCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --C--------------------------------------cCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence              0                                      000111222333332  2457788888899999999999


Q ss_pred             cCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         270 EKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       270 ~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      +++ |+++. ++..+.+.+.++.  ....++.+.|.++|+ .+.+    +..++|+++.    +++|+++++++|+++
T Consensus       270 ~~~-g~~~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~gi-~v~~----~~~~iRis~~----~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          270 REM-GYRIT-DSRGNFVFVFMEK--EEKERLLEHLRTKNV-AVRS----FREGVRITIG----KREENDMILRELEVF  334 (335)
T ss_dssp             HHH-TCCBC-CCCSSEEEEECCT--HHHHHHHHHHHHHTE-EEEE----ETTEEEEECC----CHHHHHHHHHHHHCC
T ss_pred             HHC-CcEEc-CCCCeEEEEECCC--CCHHHHHHHHHHCCE-EEEE----CCCeEEEEeC----CHHHHHHHHHHHHhh
Confidence            887 77653 4455666776653  345678888888884 4444    2358999763    468899999998753

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.69  E-value=4.1e-15  Score=144.27  Aligned_cols=252  Identities=12%  Similarity=0.046  Sum_probs=143.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCC------------cceEEEecCCCCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCcc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGT   96 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~   96 (367)
                      +.+|+.+...|-+...++...|            .+++.++.+     |+++|+++++ +.      +.+|+++..++++
T Consensus       157 ~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~------~~~vi~ep~~~~~  225 (433)
T 1z7d_A          157 AKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPN------VCAFIVEPIQGEA  225 (433)
T ss_dssp             CEEEEETTC--------------------------CEEEECTT-----CHHHHHHHHTSTT------EEEEEECSSBSTT
T ss_pred             CeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCC------EEEEEEECCCCCC
Confidence            4455555556665555555444            345555543     8999999994 32      3466666555668


Q ss_pred             cccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhh
Q psy3048          97 CAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLT  171 (367)
Q Consensus        97 G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~  171 (367)
                      |.+.    ++++|.++|++||+++++|++|+++......+.....++ ..|+++  ..|+++++ ..+|+++.++ +...
T Consensus       226 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~~~~G~v~~~~-~~~~  301 (433)
T 1z7d_A          226 GVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVIL--LGKALSGGHYPISAVLAND-DIML  301 (433)
T ss_dssp             TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTSSCCEEEEECH-HHHT
T ss_pred             CccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCCEEE--ECccccCCCCCeEEEEECH-HHHh
Confidence            8764    899999999999999999999975322111111111122 357764  46999865 4588888754 3222


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL  251 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  251 (367)
                      . +.  +     ...     ...|                                  .++.+.+....++++.+..+  
T Consensus       302 ~-l~--~-----~~~-----~~t~----------------------------------~~~~~~~aaa~aal~~~~~~--  332 (433)
T 1z7d_A          302 V-IK--P-----GEH-----GSTY----------------------------------GGNPLAASICVEALNVLINE--  332 (433)
T ss_dssp             T-CC--T-----TCC-----CCTT----------------------------------TTCHHHHHHHHHHHHHHHHT--
T ss_pred             h-hc--c-----ccc-----cccC----------------------------------CCCHHHHHHHHHHHHHHHhc--
Confidence            1 11  0     000     0000                                  01112223344455544332  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEe
Q psy3048         252 QAYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVV  327 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~  327 (367)
                       ++.++..++.+++.++|+++    +.+... ++..+++.+.++.......++.+.|.++|++ +.+.   +..++|+++
T Consensus       333 -~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~iRi~~  406 (433)
T 1z7d_A          333 -KLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNELVNVLDICLKLKENGLI-TRDV---HDKTIRLTP  406 (433)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTTTCCHHHHHHHHHHTTEE-CCEE---TTTEEEECC
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccChhHHHHHHHHHHHCCeE-EecC---CCCEEEEEC
Confidence             45567778888888887653    332222 2234566777754212356888999988843 3332   346899965


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         328 TSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       328 ~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       ...++++|+++++++|+++++++.
T Consensus       407 -~~~~t~e~i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          407 -PLCITKEQLDECTEIIVKTVKFFD  430 (433)
T ss_dssp             -CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CcCCCHHHHHHHHHHHHHHHHHHH
Confidence             456789999999999999988764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.69  E-value=3e-15  Score=143.06  Aligned_cols=250  Identities=10%  Similarity=0.035  Sum_probs=147.9

Q ss_pred             ceEEEecCCcchhHHHHHHhC------------CcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIG------------DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~------------g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      +.+|+.+..-|-....+....            +.++..++.+     |+++|++++++.+      .+|++..+++++|
T Consensus       125 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~------~~v~~~~~~~~~G  193 (395)
T 3nx3_A          125 GQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKT------CAIILESVQGEGG  193 (395)
T ss_dssp             CEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTE------EEEEEESEECTTS
T ss_pred             CEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCCe------EEEEEeCccCCCC
Confidence            455655655555544444332            2455666543     7999999986544      4677777778889


Q ss_pred             ccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhh
Q psy3048          98 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT  173 (367)
Q Consensus        98 ~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~  173 (367)
                      .+.|    +++|.++|++||+++++|++|+++......+.....++ ..|+++++  |.++++.++|+++.+++.... .
T Consensus       194 ~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~-~  269 (395)
T 3nx3_A          194 INPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTSA--KALGCGLSVGAFVINQKVASN-S  269 (395)
T ss_dssp             CEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGTTTSCCEEEEECHHHHHH-H
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEec--ccccCCCceEEEEEchhhhhh-h
Confidence            8877    99999999999999999999975432211111111222 24766654  888877788988875432122 1


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  253 (367)
                      +.  + .....         .|                               .   ...+.+.+..++++.+..   ++
T Consensus       270 ~~--~-~~~~~---------~~-------------------------------~---~~~~~~~aa~aal~~~~~---~~  300 (395)
T 3nx3_A          270 LE--A-GDHGS---------TY-------------------------------G---GNPLVCAGVNAVFEIFKE---EK  300 (395)
T ss_dssp             SC--T-TCCSS---------CB-------------------------------S---CCHHHHHHHHHHHHHHHH---TT
T ss_pred             cC--C-cccCC---------CC-------------------------------C---CCHHHHHHHHHHHHHHHh---hH
Confidence            11  0 00000         00                               0   011122333344443322   23


Q ss_pred             HHHHHHHHHHHHHHHhc----CCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         254 YLRKHISLAKKFADLVE----KDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      ..++..++.+++++.|.    +++.+... ++..+.+.+.+.. .....++.+.|.++|+. +.+.   +..++|+++ .
T Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~l~~~Gi~-v~~~---~~~~iRi~~-~  373 (395)
T 3nx3_A          301 ILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDK-SVKVAKVIQKCQENALL-LISC---GENDLRFLP-P  373 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECT-TSCHHHHHHHHHHTTEE-CEEE---TTTEEEECC-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCC-cchHHHHHHHHHHCCCE-EecC---CCCEEEEEC-C
Confidence            34455555555555554    34544433 2234566677754 22467888999999854 3322   356999965 5


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~  350 (367)
                      ...+++|+++++++|++++++
T Consensus       374 ~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          374 LILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            667899999999999998764

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.68  E-value=7.5e-16  Score=147.97  Aligned_cols=243  Identities=19%  Similarity=0.178  Sum_probs=157.3

Q ss_pred             EEEecCCcchhHHHHHHh-----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          32 VAYASDQSNSSVEKSAII-----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~-----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      .|++++..|.+....+..     .|+++++++.+     |+++|++++++.+      .+|++.+++|++|.+.|+++|+
T Consensus       107 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~------~~v~~e~~~np~G~~~~l~~i~  175 (400)
T 3nmy_A          107 HVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRADT------KMVWIETPTNPMLKLVDIAAIA  175 (400)
T ss_dssp             EEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             EEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhccCC------CEEEEECCCCCCCeeecHHHHH
Confidence            566677888876665433     59999999875     8999999997655      4888899999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-ccee--EEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-DCSA--MWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-g~g~--l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|++||+++++|++|+.+.+..+ ..   .+   +|+++.+.+|++++|. ..|.  ++.++++........ ..+.  
T Consensus       176 ~la~~~g~~livDe~~~~~~~~~~-~~---~g---~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~-~~~~--  245 (400)
T 3nmy_A          176 VIARKHGLLTVVDNTFASPMLQRP-LS---LG---ADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFL-QNSI--  245 (400)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHCCG-GG---GT---CSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHH-HHHH--
T ss_pred             HHHHHcCCEEEEECCCcccccCCh-hh---cC---CcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHH-HHhc--
Confidence            999999999999999986544322 11   13   5999999999999773 3444  444444333221100 0000  


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                     +.....+..+..++  +.+.+..++++..++++
T Consensus       246 -----------------------------------------------g~~~~~~~a~~~l~--~l~~l~~r~~~~~~~a~  276 (400)
T 3nmy_A          246 -----------------------------------------------GGVQGPFDSFLALR--GLKTLPLRMRAHCENAL  276 (400)
T ss_dssp             -----------------------------------------------CCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------CCCCCHHHHHHHHH--hHhHHHHHHHHHHHHHH
Confidence                                                           00012234444444  34556778888999999


Q ss_pred             HHHHHhcCCCCeEEe-CCC----------------CceeEEEEEcCCchHHHHHHHHHhccCc---------EEEEEeE-
Q psy3048         264 KFADLVEKDDRFELV-CPP----------------SMGLVCFRLKGDNDLTNQLYERLMSHKQ---------IYIIKAS-  316 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~---------~~~~~~~-  316 (367)
                      ++.+.|+++|.+.-+ .|.                ...+++|.+++.......+.+.|...+.         +...|.. 
T Consensus       277 ~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~  356 (400)
T 3nmy_A          277 ALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVM  356 (400)
T ss_dssp             HHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTT
T ss_pred             HHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCcccc
Confidence            999999999887644 331                1358889987522334566666543220         1111100 


Q ss_pred             -E------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         317 -F------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       317 -~------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                       +            -.+..+|+|+. .    ||++.+++.|++.++
T Consensus       357 ~~~~~~~~~~~~~gi~~~liRlsvG-l----e~~~dli~dl~~al~  397 (400)
T 3nmy_A          357 THASIPVARREQLGISDALVRLSVG-I----EDLGDLRGDLERALV  397 (400)
T ss_dssp             TTTTSCHHHHHHHTCCTTEEEEECC-S----SCHHHHHHHHHHHHC
T ss_pred             ccccCCHHHHHhcCCCcCeEEEEeC-c----CCHHHHHHHHHHHHh
Confidence             0            02468999763 2    456666777776654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.68  E-value=1.7e-16  Score=153.70  Aligned_cols=253  Identities=11%  Similarity=0.002  Sum_probs=160.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCC------------cceEEEecCCC--CCcCHHHHHHHHHHHhhCCCccEEEEEecCCCc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLVATLGTTG   95 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~--~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~   95 (367)
                      .-.|++++.+|.++..+++..|            .+++.++++++  ...|+   ++  .+.      +.+|++++++|+
T Consensus       142 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~--~~~------~~~v~l~~p~NP  210 (432)
T 3ei9_A          142 NVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDL---ST--VGR------TDIIFFCSPNNP  210 (432)
T ss_dssp             TCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCG---GG--CCC------CSEEEEESSCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCCh---hh--CCC------CCEEEEeCCCCC
Confidence            3456778899999999888776            37888888643  33443   22  111      347778899999


Q ss_pred             ccccC---ChhhHHHHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccc-cCCcceeEEEecchhh
Q psy3048          96 TCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHL  170 (367)
Q Consensus        96 ~G~i~---dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~  170 (367)
                      +|.+.   ++++|+++|++||+++++|++|+.+.+....... ...+....++++.+.+|.++ .+..+|+++.++....
T Consensus       211 tG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~  290 (432)
T 3ei9_A          211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLY  290 (432)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhh
Confidence            99985   4677777899999999999999875442111100 01112234688899999997 4466888887543210


Q ss_pred             ------hhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH
Q psy3048         171 ------TNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR  244 (367)
Q Consensus       171 ------~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (367)
                            ...+.....+                                              ....   ...+...+++.
T Consensus       291 ~~~~~~~~~~~~~~~~----------------------------------------------~~~~---~~~~~~~a~~~  321 (432)
T 3ei9_A          291 SDGFPVAKDFNRIICT----------------------------------------------CFNG---ASNISQAGALA  321 (432)
T ss_dssp             TTSCBHHHHHHHHHHH----------------------------------------------SCCC---SCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhcc----------------------------------------------ccCC---CCHHHHHHHHH
Confidence                  0000000000                                              0000   01123333333


Q ss_pred             Hh---hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---
Q psy3048         245 SY---GLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---  317 (367)
Q Consensus       245 ~~---~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---  317 (367)
                      .+   +.+.+++..++..++++++.+.|+++ |+++..++....+.+.+++  ....++.+.|.++ | +++.++..   
T Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~g-v~v~~g~~f~~  397 (432)
T 3ei9_A          322 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPN--QSSWDVFAEILEKTH-VVTTPGSGFGP  397 (432)
T ss_dssp             HSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTT--SCHHHHHHHHHHHHC-EECEEGGGGCG
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCC--CCHHHHHHHHHHHCC-EEEeCchHhCC
Confidence            33   33457788888999999999999987 8887765566667777763  2356777777766 6 45544322   


Q ss_pred             CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         318 QGRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       318 ~~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      .+..++|+++   .+++++++++++.|++--.
T Consensus       398 ~~~~~iRis~---~~~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          398 GGEGFVRVSA---FGHRENILEACRRFKQLYK  426 (432)
T ss_dssp             GGTTEEEEEC---CSCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEe---cCCHHHHHHHHHHHHHHhh
Confidence            2357999975   3489999999999987533

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.67  E-value=6.1e-15  Score=142.62  Aligned_cols=260  Identities=7%  Similarity=-0.018  Sum_probs=154.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCC-------------cceEEEecCC-----C-CCcCHHHHHHHHHHHhhCCCccEEEEEe
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD-------------VPVRQLRSDD-----N-GVLRGDALLTAVKEDLAKGLIPCCLVAT   90 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g-------------~~v~~v~~~~-----~-~~~d~~~L~~~l~~~~~~~~~~~~vv~~   90 (367)
                      +.+|+.+...|.+...++...|             ..++.++.+.     . +.+|+++|++++++...   ...+|+++
T Consensus       135 ~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~vi~~  211 (429)
T 1s0a_A          135 QRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH---EIAAVIIE  211 (429)
T ss_dssp             CEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTT---TEEEEEEC
T ss_pred             CeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCC---CEEEEEEe
Confidence            4555555566665554544322             1456666532     2 36899999999975311   12455555


Q ss_pred             cC-CCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEE
Q psy3048          91 LG-TTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWV  164 (367)
Q Consensus        91 ~~-~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~  164 (367)
                      .. ++++|.+.|    +++|.++|++||+++|+|++|+++......+.....++ ..|+++++  |+++++ .++|+++.
T Consensus       212 p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~G~~~iG~~~~  288 (429)
T 1s0a_A          212 PIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATLT  288 (429)
T ss_dssp             SSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEE
T ss_pred             ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEec--ccccCCCccceEEEe
Confidence            54 578998766    99999999999999999999975322111111111122 34777654  888877 78999887


Q ss_pred             ecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH
Q psy3048         165 KNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL  243 (367)
Q Consensus       165 ~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (367)
                      ++ +......... ..+....         .+                                  ..+.+...++.+++
T Consensus       289 ~~-~~~~~l~~~~~~~~~~~~---------t~----------------------------------~~n~~~~~a~~aal  324 (429)
T 1s0a_A          289 TR-EVAETISNGEAGCFMHGP---------TF----------------------------------MGNPLACAAANASL  324 (429)
T ss_dssp             CH-HHHHHHHTSTTSSCSCCC---------TT----------------------------------TTCHHHHHHHHHHH
T ss_pred             CH-HHHHHhhcCCCcccccCC---------CC----------------------------------CCCHHHHHHHHHHH
Confidence            54 3332211100 0000000         00                                  01112223334445


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         244 RSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       244 ~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                      +.+..+   +..++..++.+++.++|+++   +++..+. +..+++.+.++. .....++.+.|.++|+ .+.+.   + 
T Consensus       325 ~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~g~~~~~~~~~-~~~~~~l~~~l~~~Gi-~v~~~---~-  394 (429)
T 1s0a_A          325 AILESG---DWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTH-PVNMAALQKFFVEQGV-WIRPF---G-  394 (429)
T ss_dssp             HHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESS-CBCHHHHHHHHHHTTE-ECCCB---T-
T ss_pred             HHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEE-EeeEEEEEEECC-cccHHHHHHHHHHCCC-EEecc---C-
Confidence            443332   35567778888888888775   5664332 233456677753 1235678888888884 44331   2 


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .++|+++ +..++++|+++++++|++++++
T Consensus       395 ~~iRis~-~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          395 KLIYLMP-PYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             TEEEECC-CTTCCHHHHHHHHHHHHHHTSS
T ss_pred             CEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence            5899965 4667899999999999988654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.67  E-value=3e-15  Score=145.49  Aligned_cols=250  Identities=11%  Similarity=-0.011  Sum_probs=154.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCC------------cceEEEecCCCCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCcc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGT   96 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~   96 (367)
                      +.+|+.+...|.+...++...|            .+++.++.+     |+++|+++++ +.      +.+|++...++++
T Consensus       168 ~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~------~~~vi~ep~~~~~  236 (439)
T 2oat_A          168 AKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDPN------VAAFMVEPIQGEA  236 (439)
T ss_dssp             CEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTSTT------EEEEEECSSBTTT
T ss_pred             CeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCCC------EEEEEEECCCCCC
Confidence            4566666666777666666655            466767653     8999999985 22      2466666555667


Q ss_pred             cccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhh
Q psy3048          97 CAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLT  171 (367)
Q Consensus        97 G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~  171 (367)
                      |.+.    ++++|.++|++||+++++|++|.++......+.....++ ..|++  +..|+++++ ..+|+++.++ +...
T Consensus       237 G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~v~~~~-~~~~  312 (439)
T 2oat_A          237 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSAVLCDD-DIML  312 (439)
T ss_dssp             TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEEEECH-HHHT
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCCCeEEEEECH-HHHh
Confidence            8765    899999999999999999999965322111111111222 34766  556998865 4588888854 3222


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL  251 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  251 (367)
                      . +.  +     ...     ...|                                  .++.+.+....++++.+..+  
T Consensus       313 ~-l~--~-----~~~-----~~t~----------------------------------~~~~~~~aaa~aal~~~~~~--  343 (439)
T 2oat_A          313 T-IK--P-----GEH-----GSTY----------------------------------GGNPLGCRVAIAALEVLEEE--  343 (439)
T ss_dssp             T-SC--T-----TSS-----CCSS----------------------------------TTCHHHHHHHHHHHHHHHHT--
T ss_pred             c-cC--C-----CCc-----ccCC----------------------------------CcCHHHHHHHHHHHHHHhhh--
Confidence            1 11  0     000     0000                                  01112223344455544332  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEe--CCCCceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEec
Q psy3048         252 QAYLRKHISLAKKFADLVEKDDRFELV--CPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVT  328 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~g~~~~--~~~~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~  328 (367)
                       ++.++..++.+++.+.|+++ ++.++  .++...++.+.+.... ....++.+.|.++|+ .+.+   .+..++|+++ 
T Consensus       344 -~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv-~v~~---~~~~~iRi~~-  416 (439)
T 2oat_A          344 -NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGL-LAKP---THGDIIRFAP-  416 (439)
T ss_dssp             -THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTE-ECCB---SSSSEEEECC-
T ss_pred             -hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCe-EEec---CCCCEEEEEC-
Confidence             45678889999999999886 33221  1223455667765421 235688899998884 3332   2456899965 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q psy3048         329 SPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~~~  350 (367)
                      ...++++|+++++++|++++++
T Consensus       417 ~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          417 PLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHh
Confidence            4577899999999999998764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.67  E-value=2e-16  Score=151.07  Aligned_cols=254  Identities=13%  Similarity=0.102  Sum_probs=156.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++++.+|.++...++..|++++.++.  ++++.+|+++|++++++..   ....++++++++|++|.+   +++++|
T Consensus       122 d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l  198 (397)
T 3fsl_A          122 SGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQ---AGSIVLLHPCCHNPTGADLTNDQWDAV  198 (397)
T ss_dssp             CCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCC---TTCEEEECSSSCTTTCCCCCHHHHHHH
T ss_pred             CeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCC---CCCEEEEeCCCCCCCCcCCCHHHHHHH
Confidence            35667889999999999999999999998  4578999999999997421   113588889999999999   566799


Q ss_pred             HHHHhhcCcEEEEecccccccccCh----hhhhhhCCCCCcceeeecccccccc-CCcceeEEEe--cchhhhhhccCCc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP----EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVK--NANHLTNTFFTDR  178 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~----~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~--~~~~~~~~~~~~~  178 (367)
                      +++|++||+++++|++|+.+.+..+    .... +.+.....++..+.+|.++. +.++|+++..  +...+.+......
T Consensus       199 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~  277 (397)
T 3fsl_A          199 IEILKARELIPFLDIAYQGFGAGMEEDAYAIRA-IASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLK  277 (397)
T ss_dssp             HHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHH-HHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEEecCchhhccCcccccHHHHH-HHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHH
Confidence            9999999999999999987654311    1111 11111235777888999873 3557887753  3332322110000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH-----hhHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS-----YGLKGLQA  253 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~g~~~  253 (367)
                      .+......                                           ....+.+..+...+..     ...+.+++
T Consensus       278 ~~~~~~~~-------------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  314 (397)
T 3fsl_A          278 ATVRRNYS-------------------------------------------SPPNFGAQVVAAVLNDEALKASWLKEVEE  314 (397)
T ss_dssp             HHHHTTTS-------------------------------------------SCCSHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHhccC-------------------------------------------CCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            00000000                                           0000111111112221     11455777


Q ss_pred             HHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEE-EEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         254 YLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCF-RLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f-~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      ..++..++++++.+.|++++   |+.+..+ ..+.+.+ .+   .  ...+.+.|.++| +++.++    .   |+++. 
T Consensus       315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~---~--~~~~~~~l~~~g-i~v~~g----~---Ris~~-  379 (397)
T 3fsl_A          315 MRTRILAMRQELVKVLSTEMPERNFDYLLN-QRGMFSYTGL---S--AAQVDRLREEFG-VYLIAS----G---RMCVA-  379 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTSCCTHHHH-CCSSEEECCC---C--HHHHHHHHHTTC-EECCTT----C---EEEGG-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCceeecC-CceEEEecCC---C--HHHHHHHHHhCC-EEECCC----C---eEEEE-
Confidence            88888999999999998864   5654433 2333322 22   1  344556666677 444322    1   88763 


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~  347 (367)
                      .. +++||++++++|+++
T Consensus       380 ~~-~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          380 GL-NTANVQRVAKAFAAV  396 (397)
T ss_dssp             GC-CTTTHHHHHHHHHHH
T ss_pred             ec-CHhhHHHHHHHHHhh
Confidence            22 457799999999875

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.49  E-value=3.6e-18  Score=163.37  Aligned_cols=262  Identities=12%  Similarity=0.035  Sum_probs=166.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-C--CCCcCHHHHHHHHH-HHhhCCCccEEEEEecCCCcccccC---Ch
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-D--NGVLRGDALLTAVK-EDLAKGLIPCCLVATLGTTGTCAFD---NL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~--~~~~d~~~L~~~l~-~~~~~~~~~~~vv~~~~~t~~G~i~---dl  102 (367)
                      .-.|++.+.+|.++...++..|++++.++.+ +  ++.+|+++|+++++ +.+      .+|++++++|++|.+.   ++
T Consensus       113 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~------~~v~~~~~~nptG~~~~~~~l  186 (392)
T 3b1d_A          113 GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDV------KLYLLCNPHNPGGRVWEREVL  186 (392)
Confidence            3457778889999988888889999999884 3  35689999999997 333      3666788999999985   49


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC----CCcceeeeccccccc-cCCcceeEEEecchhhhhhccCC
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~----~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      ++|.++|++||+++++|++|+.+.+....... +..+    ...++++.+.+|+++ .+..+|+++..+++.........
T Consensus       187 ~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~  265 (392)
T 3b1d_A          187 EQIGHLCQKHHVILVSDEIHQDLTLFGHEHVS-FNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ  265 (392)
Confidence            99999999999999999999876543211111 0111    123577888999997 44568888875443332111000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK  257 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~  257 (367)
                      ..+                                              .......+....+.+++.. +.+.+++..++
T Consensus       266 ~~~----------------------------------------------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~  298 (392)
T 3b1d_A          266 LVN----------------------------------------------NHHEVSSLGYIATETAYRY-GKPWLVALKAV  298 (392)
Confidence            000                                              0000000111122223332 23456777778


Q ss_pred             HHHHHHHHHHHhcC-CCCeEEeCCCCceeE-EEEEcCCchHHHHHHHHHh-ccCcEEEEEeEE--CCeeEEEEEecCCCC
Q psy3048         258 HISLAKKFADLVEK-DDRFELVCPPSMGLV-CFRLKGDNDLTNQLYERLM-SHKQIYIIKASF--QGRPFLRFVVTSPET  332 (367)
Q Consensus       258 ~~~la~~l~~~L~~-~~g~~~~~~~~~~~v-~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~--~~~~~lRi~~~~~~~  332 (367)
                      ..++.+++.+.|++ +|++.+..+ ..+.+ +++++.......++.+.|. +.|+.......+  .++.++|+++..   
T Consensus       299 ~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---  374 (392)
T 3b1d_A          299 LEENIQFAVEYFAQEAPRLKVMKP-QGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---  374 (392)
Confidence            88899999999988 778876544 33333 3555431123457888886 567543322222  245689997643   


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQSS  349 (367)
Q Consensus       333 ~~edid~li~~l~~~~~  349 (367)
                      ++++++.++++|+++++
T Consensus       375 ~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          375 PKSLVEEICKRIVCCLP  391 (392)
Confidence            57899999999988754

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.67  E-value=2.2e-16  Score=151.37  Aligned_cols=257  Identities=11%  Similarity=-0.024  Sum_probs=154.0

Q ss_pred             eEEEecCCcchhHHHHHHhCCcc-eEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVP-VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~-v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      -.|++.+.+|.++...++..|++ ++.++.++++.++. ++++.  +.      +.+|++++++|++|.+.|   +++|+
T Consensus       119 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~l~~~--~~------~~~v~l~~p~nptG~~~~~~~l~~l~  189 (400)
T 3asa_A          119 QTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFP-EFPED--TH------IDILCLCSPNNPTGTVLNKDQLRAIV  189 (400)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCC-CCCTT--CC------CSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHcCCcceEecccchhcCccc-Chhhc--cC------ccEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            35666778999999988889999 99999864322221 12221  11      347777899999999976   66789


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCC---Ccceeeecccccccc-CCcceeEEEecchh------hhhhccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSFAFNAHKWLLT-NHDCSAMWVKNANH------LTNTFFT  176 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~---~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~------~~~~~~~  176 (367)
                      ++|++||+++++|++|+.+..... ....+..+.   ..++++.+.+|+++. +..+|+++.++...      +......
T Consensus       190 ~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~  268 (400)
T 3asa_A          190 HYAIEHEILILFDAAYSTFISDPS-LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWER  268 (400)
T ss_dssp             HHHHHTTCEEEEECTTGGGCCCTT-SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHH
T ss_pred             HHHHHcCCEEEEEchhhhhhcCCC-CCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHH
Confidence            999999999999999985433211 000011111   125778999999963 34578887754321      1111000


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLR  256 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  256 (367)
                            .                                        ..........+....+..++..   ..+++..+
T Consensus       269 ------~----------------------------------------~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~  299 (400)
T 3asa_A          269 ------F----------------------------------------LSTTFNGASIPAQEAGVAGLSI---LPQLEAIH  299 (400)
T ss_dssp             ------H----------------------------------------HHHHCCCCCHHHHHHHHHHHHH---TTTCHHHH
T ss_pred             ------H----------------------------------------hccCccCCChHHHHHHHHHhCc---HHHHHHHH
Confidence                  0                                        0000000011111222223322   14667777


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEE-EcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCCC
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCPPSMGLVCFR-LKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSPE  331 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~-~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~~  331 (367)
                      +..++.+++.+.|+++ |+++..++..+.++++ ++. .....++.+.|.++ | +.+.++..   .+..++|+++   .
T Consensus       300 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g-v~v~~g~~f~~~~~~~iRis~---~  373 (400)
T 3asa_A          300 YYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQA-NISDRDLFDFFLREYH-IAITPGIGFGRSGSGFVRFSS---L  373 (400)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCT-TCCTTTHHHHHHHHHS-EECEEGGGGCGGGTTCEEEEC---C
T ss_pred             HHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCC-CCCHHHHHHHHHHhCC-EEEeChhHhCCCCCCEEEEEe---e
Confidence            8888999999999887 8887765555667777 543 11234677777655 6 44444321   1346899963   4


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh
Q psy3048         332 TNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~  352 (367)
                      ++++++++++++|++++++.-
T Consensus       374 ~~~e~i~~~l~~l~~~~~~~~  394 (400)
T 3asa_A          374 GKREDILAACERLQMAPALQS  394 (400)
T ss_dssp             SCHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHhhh
Confidence            689999999999999876543

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.67  E-value=3.7e-16  Score=150.22  Aligned_cols=258  Identities=12%  Similarity=0.087  Sum_probs=160.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcc-eEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVP-VRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~-v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      .|+++..+|.++...++..|++ ++.++.+  +++.+|+++|++++++..   ...+++++++++|++|.+   +++++|
T Consensus       132 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l  208 (412)
T 1ajs_A          132 PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQI  208 (412)
T ss_dssp             CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             eEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHH
Confidence            4666778999999999999999 9999883  568899999999997621   112577789999999998   456789


Q ss_pred             HHHHhhcCcEEEEecccccccccC---h--hhhhhhCCCCCcceeeecccccccc-CCcceeEEEe--cchhhhhhccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLL---P--EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVK--NANHLTNTFFTD  177 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~---~--~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~--~~~~~~~~~~~~  177 (367)
                      +++|++||+++++|++|+.+.+..   .  .... +.....-++++.+.+|.++. +..+|+++..  +++.+.......
T Consensus       209 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~  287 (412)
T 1ajs_A          209 ASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY-FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM  287 (412)
T ss_dssp             HHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEcccccccCCcccccchHHHH-HhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHH
Confidence            999999999999999987654432   1  1111 11111114778899998875 2347888872  333211110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-----HHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-----LKGLQ  252 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~g~~  252 (367)
                      ..+....                                           ......+.+..+..+|+...     .+.++
T Consensus       288 ~~~~~~~-------------------------------------------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  324 (412)
T 1ajs_A          288 QKIVRVT-------------------------------------------WSNPPAQGARIVARTLSDPELFHEWTGNVK  324 (412)
T ss_dssp             HHHHHTT-------------------------------------------TSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHhcc-------------------------------------------cCCCChHHHHHHHHHHcCcchhHHHHHHHH
Confidence            0000000                                           00001111223333343321     34678


Q ss_pred             HHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         253 AYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      +..++..++.+++.+.|++++   ++++..+ ..+.+.+.  +..  ...+...+.++|+ .+.+       .+|+++. 
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~--~~~--~~~~~~~l~~~gv-~v~~-------~~Ris~~-  390 (412)
T 1ajs_A          325 TMADRILSMRSELRARLEALKTPGTWNHITD-QIGMFSFT--GLN--PKQVEYLINQKHI-YLLP-------SGRINMC-  390 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSSEEEC--CCC--HHHHHHHHHTTCE-ECCT-------TSEEEGG-
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC-CCceEEEe--CCC--HHHHHHHHHhCCE-EecC-------CcEEEee-
Confidence            888889999999999998874   3655433 33333331  111  2344444556674 4432       2699765 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Q psy3048         330 PETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~~~  351 (367)
                       ..+++|+++++++|+++++++
T Consensus       391 -~~~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          391 -GLTTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             -GCCTTTHHHHHHHHHHHHHHC
T ss_pred             -eCCHHHHHHHHHHHHHHHHhc
Confidence             247899999999999998764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.66  E-value=1e-15  Score=152.40  Aligned_cols=290  Identities=7%  Similarity=-0.014  Sum_probs=168.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC----CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh--
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD----DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE--  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~----~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~--  103 (367)
                      .-.|++++.+|.++..+++..|++++.++++    +++.+|+++|++++++.+      .+|++++++|++|.+.|.+  
T Consensus       193 gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~------k~v~l~~p~NPtG~~~~~~~l  266 (533)
T 3f6t_A          193 GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSI------KALIVVNPTNPTSKEFDTNAL  266 (533)
T ss_dssp             TCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTE------EEEEEESSCTTTCBCCCHHHH
T ss_pred             cCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCC------eEEEEeCCCCCCccccCHHHH
Confidence            3467788899999999998999999999874    468999999999986554      4778889999999997666  


Q ss_pred             -hHHHHHh-hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcc-
Q psy3048         104 -ELGPICQ-EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRV-  179 (367)
Q Consensus       104 -~I~~l~~-~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~-  179 (367)
                       +|+++|+ +||+++++|++|+.+...........   ...++++.+.+|.++.| ..+|+++.++...+.+....-++ 
T Consensus       267 ~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~---~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~  343 (533)
T 3f6t_A          267 NAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVV---PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKV  343 (533)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHS---GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHH
T ss_pred             HHHHHHHHhCCCCEEEEcCCccccccCccCHhhcC---CCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchh
Confidence             8888888 69999999999986544222221111   12368889999998733 44899888766433322211100 


Q ss_pred             --------ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH-HHHHHh----
Q psy3048         180 --------YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW-MTLRSY----  246 (367)
Q Consensus       180 --------yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~----  246 (367)
                              |-.....   -....+ +-+...           .....     ..+............+. .++..+    
T Consensus       344 ~~~~~~~~~~~~~~~---p~~~~~-i~rl~~-----------~~~~~-----~~~~~~~~~~~~q~a~a~~a~~~L~~~~  403 (533)
T 3f6t_A          344 ELRQLHKRYSSVVLD---PDKMKF-IDRLCA-----------DSRSI-----GLYHTAGLSTPQQIMEALFSMTHLLTST  403 (533)
T ss_dssp             HHHHHHHHHHTTCSC---GGGCCH-HHHHHH-----------HHTTT-----TTGGGCSCCHHHHHHHHHHHHHHHTTCB
T ss_pred             hHHHHHhhhhccccC---cchhhh-HHHHHH-----------HHHHH-----HHhcccCCChHHHHHHHHHHHHHHhhhc
Confidence                    0000000   000000 000000           00000     00111111111111110 022222    


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCcee-EEEEEcCC------c---------hHHHHHHHHHh-
Q psy3048         247 ----GLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGL-VCFRLKGD------N---------DLTNQLYERLM-  305 (367)
Q Consensus       247 ----~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~-v~f~~~~~------~---------~~~~~l~~~L~-  305 (367)
                          ....+++..++..+..+++.+.|. + ++.+. ++..+. +.+.+...      .         ....++..++. 
T Consensus       404 g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~  480 (533)
T 3f6t_A          404 NGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAE  480 (533)
T ss_dssp             GGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhcC-C-Ccccc-CCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHH
Confidence                234567777788889999999997 5 55543 333333 33333210      0         01335555555 


Q ss_pred             ccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         306 SHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       306 ~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      +.|+....+..+. +.+++|+++.  ..+++|+++++++|.++++++..
T Consensus       481 ~~GV~v~pg~~f~~~~~~iRls~a--~~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          481 KNGVVLVDGVGFGAKPGELRVSQA--NLPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             HTTSSSCTTEEECSSTTEEEEESS--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEeCCcccCCCCCEEEEEEe--eCCHHHHHHHHHHHHHHHHHHHH
Confidence            4564332222222 3569999763  24689999999999999887653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.66  E-value=3.5e-16  Score=148.93  Aligned_cols=254  Identities=13%  Similarity=0.113  Sum_probs=151.0

Q ss_pred             EEEecCC---cchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEE-EEEecCCCccc-ccCChhhHH
Q psy3048          32 VAYASDQ---SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCC-LVATLGTTGTC-AFDNLEELG  106 (367)
Q Consensus        32 ~v~~s~~---~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~-vv~~~~~t~~G-~i~dl~~I~  106 (367)
                      .|++++.   +|+++...++..|++++.+       .|+++|+++ ++.      +.+ |++++++|++| ...|+++|.
T Consensus       100 ~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~------~~~~v~~~~p~nptG~~~~~l~~i~  165 (374)
T 2aeu_A          100 KVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDK------DTLVIITGSTMDLKVIELENFKKVI  165 (374)
T ss_dssp             EEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCT------TEEEEEECBCTTSCBCCHHHHHHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCC------ccEEEEEccCCCCCCCCcccHHHHH
Confidence            4555666   5666666777889999888       288999887 433      357 88889999999 889999999


Q ss_pred             HHHhhcCcEEEEecccccccc-cChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~-~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++||+++++|++|+.+.. ..........+   .|+++.++||++.+ +++|+++.++ +........ ......  
T Consensus       166 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~---~di~~~S~sK~l~g-~~~G~~~~~~-~~~~~l~~~-~~~~~~--  237 (374)
T 2aeu_A          166 NTAKNKEAIVFVDDASGARVRLLFNQPPALKLG---ADLVVTSTDKLMEG-PRGGLLAGKK-ELVDKIYIE-GTKFGL--  237 (374)
T ss_dssp             HHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT---CSEEEEETTSSSSS-CSCEEEEEEH-HHHHHHHHH-HHTTTC--
T ss_pred             HHHHHcCCEEEEECCcccccccccccCCccccC---CcEEEecCcccccC-cceEEEEECH-HHHHHHHHh-hccccC--
Confidence            999999999999999976531 11000010112   49999999999876 4889887754 333221100 000000  


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL----  261 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l----  261 (367)
                                                                  ....+.+..+..++..+..+.+++..++...+    
T Consensus       238 --------------------------------------------~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~  273 (374)
T 2aeu_A          238 --------------------------------------------EAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSK  273 (374)
T ss_dssp             --------------------------------------------BCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_pred             --------------------------------------------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                                                        00001223334445544333445555555555    


Q ss_pred             HHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCchH----HHHHHHHHh-ccCcEEEEEeE--ECCeeEEEEEecCCC
Q psy3048         262 AKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDNDL----TNQLYERLM-SHKQIYIIKAS--FQGRPFLRFVVTSPE  331 (367)
Q Consensus       262 a~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~----~~~l~~~L~-~~g~~~~~~~~--~~~~~~lRi~~~~~~  331 (367)
                      .+.+.+.|..+   +|+.+..++. +.+.+........    ..++...+. ++|+ .+.++.  ..+..++|++++...
T Consensus       274 ~~~l~~~L~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV-~v~~g~~~~~~~~~lRi~~~~~~  351 (374)
T 2aeu_A          274 IEKLNKELKAIDDNINIVYERTPT-GFVIKRVYKDDTINIKKLIEIGFNLLKNYGI-ITITVAGMPGASKSLRIDLTSRD  351 (374)
T ss_dssp             HHHHHHHHTTTCTTEEEEEEECSS-EEEEEEEESSHHHHHHHHHHHHHHHHHHHCE-ECSTTSSSCSSCCSEEEETTSGG
T ss_pred             HHHHHHhhhhhhhccCcceeeCCc-eEEEEeecccccccccchHHHHHHHHHhCCE-EEecCCCCCCCCCeEEEEcCCch
Confidence            46666666665   4666544443 3333332221111    122554444 4674 333321  123458999875444


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhC
Q psy3048         332 TNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       332 ~~~edid~li~~l~~~~~~~~~  353 (367)
                      .+++++++++++|++.++++.+
T Consensus       352 ~~~~~l~~l~~~l~~~l~~~~~  373 (374)
T 2aeu_A          352 AERIDDNYIIKAIVESIKMAFK  373 (374)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4555699999999999988764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.66  E-value=3.3e-16  Score=151.17  Aligned_cols=256  Identities=11%  Similarity=0.041  Sum_probs=158.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++++.+|.++...++..|++++.++.  ++++.+|+++|++++++..   ....++++++++|+||.+   +++++|
T Consensus       144 d~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~i  220 (420)
T 4f4e_A          144 AKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYE---PGTIVVLHACCHNPTGVDLNDAQWAQV  220 (420)
T ss_dssp             CCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence            35667788999999999999999999998  3578999999999997321   113688889999999998   457799


Q ss_pred             HHHHhhcCcEEEEecccccccccCh----hhhhhhCCCCCcceeeecccccccc-CCcceeEEEe--cchhhhhhccCCc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP----EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWVK--NANHLTNTFFTDR  178 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~----~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~--~~~~~~~~~~~~~  178 (367)
                      +++|++||+++++|++|+.+.+..+    .... ..+....++++.+.+|.++. +..+|+++..  +.....+......
T Consensus       221 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~  299 (420)
T 4f4e_A          221 VEVVKARRLVPFLDIAYQGFGESIEADAAAVRL-FAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLK  299 (420)
T ss_dssp             HHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHH-HHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEEEccccccccCCcchhhHHHHH-HHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHH
Confidence            9999999999999999977655321    1111 11122236788889999973 4568887642  2332221110000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-----hHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-----GLKGLQA  253 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~g~~~  253 (367)
                      .......                                           ...+.+.+..+...+...     ..+.+++
T Consensus       300 ~~~~~~~-------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  336 (420)
T 4f4e_A          300 RVIRTNY-------------------------------------------SNPPTHGGAIVAAVLASPELRASWVQELGE  336 (420)
T ss_dssp             HHHHTTT-------------------------------------------SSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhccc-------------------------------------------CCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            0000000                                           000001112222222221     1345677


Q ss_pred             HHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      ..++..++++++.+.|+++   +|+.+..+ ..+.+.+ + +..  ...+.+.+.+.| +++.+.       .|+++.  
T Consensus       337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~-~-~~~--~~~~~~~l~~~g-I~v~~~-------~Ris~~--  401 (420)
T 4f4e_A          337 MRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSY-S-GLT--SAQVDRLREEFG-IYAVST-------GRICVA--  401 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEE-C-CCC--HHHHHHHHHHHC-EECCTT-------SEEEGG--
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEE-e-CCC--HHHHHHHHHhCC-EEecCC-------CeEEEe--
Confidence            8888889999999999886   35654433 3333333 1 111  345555566677 444321       288764  


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~  348 (367)
                      ..+++++++++++|++++
T Consensus       402 ~~~~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          402 ALNTRNLDVVANAIAAVL  419 (420)
T ss_dssp             GCCTTTHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            235677999999999875

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.65  E-value=7.4e-16  Score=148.14  Aligned_cols=260  Identities=12%  Similarity=0.073  Sum_probs=147.2

Q ss_pred             EEEec-CCcchhHHHHHHh----C--CcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC--
Q psy3048          32 VAYAS-DQSNSSVEKSAII----G--DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN--  101 (367)
Q Consensus        32 ~v~~s-~~~H~s~~~~~~~----~--g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d--  101 (367)
                      .|+++ ..+|..+...+..    .  +..+..++.+ .++.+|+++|+  +.+.      +.+|++++++|++|.+-|  
T Consensus       129 ~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~------~~~v~~~~p~NptG~~~~~~  200 (417)
T 3g7q_A          129 KVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEE------TGMICVSRPTNPTGNVITDE  200 (417)
T ss_dssp             EEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTT------EEEEEEESSCTTTCCCCCHH
T ss_pred             eEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccC------ceEEEECCCCCCCCCccCHH
Confidence            55655 6677776555421    2  2333444432 14678999888  4333      358888999999999977  


Q ss_pred             -hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccc
Q psy3048         102 -LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       102 -l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                       +++|+++|++||+++++|++|+.+.-.. .+..........++++.+.+|++..+.++|+++.. ++...........+
T Consensus       201 ~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~-~~~~~~~~~~~~~~  278 (417)
T 3g7q_A          201 ELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIAN-DKTITAIANMNGII  278 (417)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEeCCCccccccc-cccccccCCCCCEEEEEechhccCCCcceEEEEeC-HHHHHHHHHhhcce
Confidence             8999999999999999999997421100 00000011123478888999965544567876663 33222211000000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH-HHHHH-HHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL-KGLQA-YLRKH  258 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~~~~~  258 (367)
                                                                    .. ....+....+...+..... +...+ +.++.
T Consensus       279 ----------------------------------------------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  311 (417)
T 3g7q_A          279 ----------------------------------------------SL-APGGMGPAMMCEMIKRNDLLRLSETVIKPFY  311 (417)
T ss_dssp             ----------------------------------------------CC-CCCSHHHHHHHHHHHTTCHHHHHHHTHHHHH
T ss_pred             ----------------------------------------------ee-CCCcHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence                                                          00 0000111222222322111 11112 33444


Q ss_pred             HHHHHHHHHHhcC-CC--CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-EC-C--------eeEEEE
Q psy3048         259 ISLAKKFADLVEK-DD--RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-FQ-G--------RPFLRF  325 (367)
Q Consensus       259 ~~la~~l~~~L~~-~~--g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~-~--------~~~lRi  325 (367)
                      .+..+++.+.|.+ ++  ++.+..+.....+++.++.......++.+.|.++|+ .+.++. +. +        ..++|+
T Consensus       312 ~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi-~v~~g~~f~~~~~~~~~~~~~~iRi  390 (417)
T 3g7q_A          312 YQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGV-LMVPGHYFFPGLDKPWPHTHQCMRM  390 (417)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTE-ECEEGGGGCTTBSSCCGGGGGEEEE
T ss_pred             HHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCE-EEECchhhCCCCccccccCCCeEEE
Confidence            5555566666544 34  577766555556667765422336788888988884 444332 11 1        469999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         326 VVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       326 ~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ++.  . +++|+++++++|+++++++.
T Consensus       391 s~~--~-~~~~i~~~~~~l~~~l~~~~  414 (417)
T 3g7q_A          391 NYV--P-EPDKIEAGVKILAEEIERAW  414 (417)
T ss_dssp             ESC--S-CHHHHHHHHHHHHHHHHHHH
T ss_pred             Eec--C-CHHHHHHHHHHHHHHHHHHH
Confidence            764  2 89999999999999988764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.64  E-value=3.6e-16  Score=150.31  Aligned_cols=252  Identities=12%  Similarity=0.029  Sum_probs=157.5

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEec-C-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I~  106 (367)
                      .|++++.+|.++...++..|++++.++. + +++.+|+++|++++++...   ...++++++++|++|.+.   ++++|+
T Consensus       126 ~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~~~~~p~nPtG~~~~~~~l~~l~  202 (412)
T 1yaa_A          126 LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPTGLDPTSEQWVQIV  202 (412)
T ss_dssp             CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            4666778999999999999999999998 4 3688999999999976411   124666699999999985   567889


Q ss_pred             HHHhhcCcEEEEecccccccccC---h--hhhhhhCCCCC---cceeeeccccccccCCc--ceeEE--E----ecch--
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLL---P--EYAHLKRGLEY---VDSFAFNAHKWLLTNHD--CSAMW--V----KNAN--  168 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~---~--~~~~~~~~~~~---~D~~~~~~hK~l~~p~g--~g~l~--~----~~~~--  168 (367)
                      ++|++||+++++|++|+.+.+..   +  .... +.....   -++++.+.+|.++ |+|  +|+++  .    ++++  
T Consensus       203 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~  280 (412)
T 1yaa_A          203 DAIASKNHIALFDTAYQGFATGDLDKDAYAVRL-GVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIK  280 (412)
T ss_dssp             HHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHH-HHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHH
T ss_pred             HHHHHCCCEEEEecccccccCCcccchhHHHHH-HHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHH
Confidence            99999999999999997654321   1  1111 000111   2577888999887 445  68877  4    1333  


Q ss_pred             --hhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh
Q psy3048         169 --HLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY  246 (367)
Q Consensus       169 --~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (367)
                        ......    .......                                           .....+....+..++...
T Consensus       281 ~~l~~~l~----~~~~~~~-------------------------------------------~~~~~~~~~a~~~~l~~~  313 (412)
T 1yaa_A          281 PAVTSQLA----KIIRSEV-------------------------------------------SNPPAYGAKIVAKLLETP  313 (412)
T ss_dssp             HHHHHHHH----HHHHTTT-------------------------------------------SSCCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHH----HHHhhcc-------------------------------------------CCCChHHHHHHHHHhCCH
Confidence              221110    0000000                                           000001112223333322


Q ss_pred             h-----HHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC
Q psy3048         247 G-----LKGLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ  318 (367)
Q Consensus       247 ~-----~~g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~  318 (367)
                      .     .+++++..++..++.+++.+.|++++   ++++.. +..+.+.+.  +.+  ...+...+.+.| +.+.+    
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~--~~~--~~~~~~~l~~~g-i~v~~----  383 (412)
T 1yaa_A          314 ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMFSFT--GLT--PQMVKRLEETHA-VYLVA----  383 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSEEEC--CCC--HHHHHHHHHHHC-EECCT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEEEee--CCC--HHHHHHHHHhCC-EEecc----
Confidence            1     24678888888999999999998864   365543 333444331  212  344544444567 34432    


Q ss_pred             CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         319 GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       319 ~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                         ++|+++.  ..+++|+++++++|+++++.
T Consensus       384 ---~~Ris~~--~~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          384 ---SGRASIA--GLNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             ---TSEEEGG--GCCTTTHHHHHHHHHHHHHH
T ss_pred             ---CcEEEEc--cCCHhHHHHHHHHHHHHHHh
Confidence               5799764  24799999999999998764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.64  E-value=4.3e-14  Score=136.71  Aligned_cols=245  Identities=11%  Similarity=0.034  Sum_probs=132.7

Q ss_pred             ceEEEecCCC---CCcCHHHHHHHHHHHhhCCCccEEEEEecCCC-cccccCC----hhhHHHHHhhcCcEEEEeccccc
Q psy3048          53 PVRQLRSDDN---GVLRGDALLTAVKEDLAKGLIPCCLVATLGTT-GTCAFDN----LEELGPICQEYNIWLHVDAAYAG  124 (367)
Q Consensus        53 ~v~~v~~~~~---~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t-~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~  124 (367)
                      .+..++.++.   +..|+++|++++++...  ..+.+|+++..++ ++|.+.+    +++|.++|++||+++++|++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~  236 (430)
T 3i4j_A          159 AWPKLPKPDPARNGAEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG  236 (430)
T ss_dssp             GSCEECCCCTTSCHHHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred             CceEcCCCcccchhhHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence            4445554433   34577999999975310  1124566666666 7888777    99999999999999999999976


Q ss_pred             ccccChhhhhhhC-CCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhc
Q psy3048         125 SALLLPEYAHLKR-GLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLG  202 (367)
Q Consensus       125 ~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~  202 (367)
                      +......+..... ++ ..|++++  .|.+.++ ..+|+++.+ ++...........+....         .|       
T Consensus       237 ~~~~g~~~~~~~~~~~-~~di~t~--sK~l~~G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~---------t~-------  296 (430)
T 3i4j_A          237 MGRCGSPLALSRWSGV-TPDIAVL--GKGLAAGYAPLAGLLAA-PQVYETVMGGSGAFMHGF---------TY-------  296 (430)
T ss_dssp             TTTTSSSSGGGGTTTC-CCSEEEE--CGGGTTTSSCCEEEEEC-HHHHHHHHHTTCBCCCCC---------TT-------
T ss_pred             CCcccchhhhhhhcCC-CCcEEEE--cccccCCccccEEEEEC-HHHHHHHhccCCcccccC---------CC-------
Confidence            5332211111111 22 2466665  4998865 557888774 333322111111111000         00       


Q ss_pred             ccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEe
Q psy3048         203 KALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV----EKDDRFELV  278 (367)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L----~~~~g~~~~  278 (367)
                                                 ....+.+.+..++++.+..+   ++.++..++.+++++.|    .+++++...
T Consensus       297 ---------------------------~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  346 (430)
T 3i4j_A          297 ---------------------------AGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQALQARFPQMMQV  346 (430)
T ss_dssp             ---------------------------TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             ---------------------------CCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence                                       01111223333444443232   33344444555554444    345666544


Q ss_pred             CCCCceeEEEEEcCC--------chHHHHHHHHHhccCcEEEEEe-E--ECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         279 CPPSMGLVCFRLKGD--------NDLTNQLYERLMSHKQIYIIKA-S--FQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       279 ~~~~~~~v~f~~~~~--------~~~~~~l~~~L~~~g~~~~~~~-~--~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                      . +..+.+.+.+.+.        .....++.+.|.++|++..... .  ..+..++|+++ ....+++|+++++++|+++
T Consensus       347 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~  424 (430)
T 3i4j_A          347 R-GTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGP-PLSITAAEVDGLLALLAGA  424 (430)
T ss_dssp             E-EETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------CEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred             E-EEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHH
Confidence            3 2334555555321        0113578888998985432211 1  11356899965 4566899999999999999


Q ss_pred             HHHh
Q psy3048         348 SSEM  351 (367)
Q Consensus       348 ~~~~  351 (367)
                      ++++
T Consensus       425 l~~~  428 (430)
T 3i4j_A          425 LEDV  428 (430)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.64  E-value=2.4e-14  Score=138.15  Aligned_cols=255  Identities=9%  Similarity=-0.063  Sum_probs=150.4

Q ss_pred             CceEEEecCCcchhHHHHHHhCC-------------cceEEEecCCCCC----------------cCHHHHH-HHHHHHh
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGD-------------VPVRQLRSDDNGV----------------LRGDALL-TAVKEDL   78 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g-------------~~v~~v~~~~~~~----------------~d~~~L~-~~l~~~~   78 (367)
                      ++.+|+.+..-|.+...++...|             .+++.++.+++++                +|+++|+ +++++..
T Consensus       129 ~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~  208 (419)
T 2eo5_A          129 RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV  208 (419)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC
T ss_pred             CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhcc
Confidence            35566655566655555443322             3677888765443                4688999 8887420


Q ss_pred             hCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc
Q psy3048          79 AKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL  154 (367)
Q Consensus        79 ~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~  154 (367)
                       ......+|+++..++++|.+.|    +++|.++|++||+++++|++|+++......+.....++ ..|+++  ..|.++
T Consensus       209 -~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t--~sK~~~  284 (419)
T 2eo5_A          209 -PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVIT--LAKALG  284 (419)
T ss_dssp             -CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGG
T ss_pred             -CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEE--eccccc
Confidence             0001235555544456898766    99999999999999999999985432211111111122 347665  458888


Q ss_pred             cC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc
Q psy3048         155 TN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR  233 (367)
Q Consensus       155 ~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (367)
                      ++ .++|+++.+++- .  .+        ....   ..  .|                                  ..+.
T Consensus       285 ~G~~riG~~~~~~~~-~--~~--------~~~~---~~--t~----------------------------------~~n~  314 (419)
T 2eo5_A          285 GGIMPIGATIFRKDL-D--FK--------PGMH---SN--TF----------------------------------GGNA  314 (419)
T ss_dssp             TTTSCCEEEEEEGGG-C--CC-------------------CC----------------------------------CCCH
T ss_pred             CCccceEEEEEchHh-h--cC--------Cccc---CC--CC----------------------------------CCCH
Confidence            76 788998885431 1  11        0000   00  00                                  0011


Q ss_pred             ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE
Q psy3048         234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII  313 (367)
Q Consensus       234 ~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~  313 (367)
                      +...+..++++..     ++..++..++.+++.+.|+++  +..+ ++..+.+.+.+.+...... +.+.|.++|+. +.
T Consensus       315 ~~~~aa~aal~~~-----~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~-v~  384 (419)
T 2eo5_A          315 LACAIGSKVIDIV-----KDLLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNEKKVRDR-IIGESFKRGLL-LL  384 (419)
T ss_dssp             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSCHHHHHH-HHHHHHHTTEE-CE
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEecCccHHH-HHHHHHHCCCE-Ee
Confidence            1123333444432     226678889999999999876  2111 2334556666632112345 88888888854 43


Q ss_pred             EeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         314 KASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       314 ~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.   +..++|+++ +...+++|+++++++|+++++++
T Consensus       385 ~~---~~~~lRis~-~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          385 PA---GRSAIRVIP-PLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             EE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHhc
Confidence            32   246899965 45678999999999999987753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.64  E-value=1e-14  Score=142.40  Aligned_cols=264  Identities=16%  Similarity=0.146  Sum_probs=151.9

Q ss_pred             EEecCCcchhHHHH-HHhCCcceEEE------ecC----CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc-
Q psy3048          33 AYASDQSNSSVEKS-AIIGDVPVRQL------RSD----DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF-   99 (367)
Q Consensus        33 v~~s~~~H~s~~~~-~~~~g~~v~~v------~~~----~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i-   99 (367)
                      |+++ ..|+....+ ....|+.+...      +.+    .++.+|+++|++++++..  ...+.+|++++++|++ |.+ 
T Consensus       125 Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~  201 (467)
T 2oqx_A          125 VAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPV  201 (467)
T ss_dssp             EEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCC
T ss_pred             EEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccC
Confidence            5555 578664333 33455554432      222    357799999999998631  0013478888888887 665 


Q ss_pred             --CChhhHHHHHhhcCcEEEEeccccc-ccc--------cCh-hhhhhh-CCCCCcceeeeccccccccCCcceeEEEec
Q psy3048         100 --DNLEELGPICQEYNIWLHVDAAYAG-SAL--------LLP-EYAHLK-RGLEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus       100 --~dl~~I~~l~~~~gi~l~vD~a~~~-~~~--------~~~-~~~~~~-~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                        +++++|+++|++||+++|+|++|+. +.+        ..+ ...... ...+.+|++++++||+++.|.| |+++.++
T Consensus       202 ~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~  280 (467)
T 2oqx_A          202 SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKD  280 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECS
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecC
Confidence              4688999999999999999988865 221        000 011100 0012358889999999987744 5555544


Q ss_pred             c---hhhhhhccCCcccc--ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHH
Q psy3048         167 A---NHLTNTFFTDRVYL--KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWM  241 (367)
Q Consensus       167 ~---~~~~~~~~~~~~yl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (367)
                      .   +.+.+.    ..+.  ..+..       .+                               ..     ..+..+ +
T Consensus       281 ~~~~~~~~~~----~~~~~~~~~~~-------~~-------------------------------~~-----~~~~~~-~  312 (467)
T 2oqx_A          281 DSFFDVYTEC----RTLCVVQEGFP-------TY-------------------------------GG-----LEGGAM-E  312 (467)
T ss_dssp             GGGHHHHHHH----HHHHHHTTSSC-------CC-------------------------------CC-----CCHHHH-H
T ss_pred             hhHHHHHHHH----HHhhhccCCcc-------cc-------------------------------cc-----hhhhHH-H
Confidence            4   222211    0111  00000       00                               00     001111 1


Q ss_pred             HHHHhhHHHH-HHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEc----CC--chH-HHHHHHHH-hccCcEEE
Q psy3048         242 TLRSYGLKGL-QAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLK----GD--NDL-TNQLYERL-MSHKQIYI  312 (367)
Q Consensus       242 ~l~~~~~~g~-~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~----~~--~~~-~~~l~~~L-~~~g~~~~  312 (367)
                      ++.....+.+ ++.+++..++++++.+.|+++ |+++. +.....+.+.+.    +.  ... ..++.+.| .++|+ .+
T Consensus       313 al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv-~~  389 (467)
T 2oqx_A          313 RLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGI-RA  389 (467)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCE-EC
T ss_pred             HHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCc-ee
Confidence            2211101111 234455677888999999887 77777 555566777763    11  112 45668888 77774 44


Q ss_pred             EE-eEE-----C--------CeeEEEEEecCCC-CCHHHHHHHHHHHHHHHHHhh
Q psy3048         313 IK-ASF-----Q--------GRPFLRFVVTSPE-TNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       313 ~~-~~~-----~--------~~~~lRi~~~~~~-~~~edid~li~~l~~~~~~~~  352 (367)
                      .+ +.+     .        +..++|+++ ... ++++||++++++|++++++..
T Consensus       390 ~~~~~~~~~~~~~~g~~~~~~~~~iRl~~-~~~~~t~e~i~~~~~~l~~~l~~~~  443 (467)
T 2oqx_A          390 VEIGSFLLGRDPKTGKQLPCPAELLRLTI-PRATYTQTHMDFIIEAFKHVKENAA  443 (467)
T ss_dssp             EEESHHHHCBCTTTCSBCCCSCCEEEECC-CTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred             cccccccccccccccccccCccCeEEEEe-cCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            33 210     0        136899965 455 889999999999999988754

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.63  E-value=2e-15  Score=145.10  Aligned_cols=255  Identities=16%  Similarity=0.095  Sum_probs=154.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I  105 (367)
                      -.|++++.+|.++...++..|++++.++.  ++++.+|+++|++++++..+   ...++++++++|+||.+.+   +++|
T Consensus       132 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~i~~~~p~NPtG~~~~~~~l~~i  208 (409)
T 4eu1_A          132 NRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPE---GSVILVHACAHNPTGVDPTHDDWRQV  208 (409)
T ss_dssp             CEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCC---CcEEEEECCCCCCCCCCCCHHHHHHH
Confidence            46777889999999999999999999987  35689999999999975321   1357777899999999966   5559


Q ss_pred             HHHHhhcCcEEEEecccccccccCh-----hhhhhhCCCCCcceeeeccccccccC-CcceeE--EEecchhhhhhccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLP-----EYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAM--WVKNANHLTNTFFTD  177 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l--~~~~~~~~~~~~~~~  177 (367)
                      +++|++||+++++|++|+.+.+...     .... +.+...-.+++.+.+|.++.| ..+|++  ++.+++........-
T Consensus       209 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~  287 (409)
T 4eu1_A          209 CDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRH-LVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQL  287 (409)
T ss_dssp             HHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH-HHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHhCCcEEEEeccccccccCCcccchHHHHH-HHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHH
Confidence            9999999999999999987654321     1111 111111135666788998743 557886  555544211110000


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh-----HHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG-----LKGLQ  252 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~g~~  252 (367)
                      ..+...                                           .......+.+..+..++....     .+.++
T Consensus       288 ~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  324 (409)
T 4eu1_A          288 ALLIRP-------------------------------------------MYNNPPLYGAWVVSSILKDPQLTALWKKELK  324 (409)
T ss_dssp             HHHHHH-------------------------------------------HHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHhh-------------------------------------------hcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            000000                                           000000011122222232211     33467


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEECCeeEEEEEec
Q psy3048         253 AYLRKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASFQGRPFLRFVVT  328 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~lRi~~~  328 (367)
                      +..++..++.+++.+.|++++.   +++.. +..+.+.+ . +.   +.++..++.+ .| +++.++       .|+++.
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~-~~---~~~~~~~ll~~~g-v~v~p~-------~Ri~~~  390 (409)
T 4eu1_A          325 QMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY-T-GL---TREQVELLRSEYH-IYMTLN-------GRAAVS  390 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE-C-CC---CHHHHHHHHHHHC-EECCTT-------CEEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE-e-CC---CHHHHHHHHHcCC-EEEcCC-------CEEEEE
Confidence            7788888999999999988621   44433 33444443 2 21   2345556654 46 444321       377653


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q psy3048         329 SPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~  348 (367)
                       .. +++|+++++++|++++
T Consensus       391 -~~-~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          391 -GL-NSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             -GC-CTTTHHHHHHHHHHHH
T ss_pred             -ec-CHhhHHHHHHHHHHHh
Confidence             33 4677999999998875

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.63  E-value=6.8e-16  Score=147.35  Aligned_cols=254  Identities=13%  Similarity=0.027  Sum_probs=155.4

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~  106 (367)
                      .|+++..+|.++...++..|++++.++.+  +++.+|+++|++++++...   ...++++++++|++|.+.|   +++|+
T Consensus       119 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~~~~~~~~nptG~~~~~~~l~~i~  195 (394)
T 2ay1_A          119 RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGANLTLDQWAEIA  195 (394)
T ss_dssp             CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT---TCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence            46667789999999999899999999985  5688999999999975311   1257778999999999864   66889


Q ss_pred             HHHhhcCcEEEEecccccccccC--h--hhhhhhCCCCCcceeeecccccccc-CCcceeEEE--ecchhhhhhccCCcc
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLL--P--EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWV--KNANHLTNTFFTDRV  179 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~--~--~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~--~~~~~~~~~~~~~~~  179 (367)
                      ++|++||+++++|++|+.+.+..  +  .... +.....-.+++.+.+|+++. +..+|+++.  .+++.+......-..
T Consensus       196 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~  274 (394)
T 2ay1_A          196 SILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAF  274 (394)
T ss_dssp             HHHHHHTCEEEEEECCTTSSSCHHHHHHHHHH-HHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEecCccccccCcccchHHHHH-HhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHH
Confidence            99999999999999998754421  1  1110 11111113667788999873 344688887  233322111000000


Q ss_pred             ccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-----hHHHHHHH
Q psy3048         180 YLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-----GLKGLQAY  254 (367)
Q Consensus       180 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~g~~~~  254 (367)
                      .....          +                                 .....+.+..+..+++..     ..+.+++.
T Consensus       275 ~~~~~----------~---------------------------------~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~  311 (394)
T 2ay1_A          275 LNRQT----------Y---------------------------------SFPPFHGAKIVSTVLTTPELRADWMAELEAV  311 (394)
T ss_dssp             HHHTT----------T---------------------------------SSCCCHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHhhh----------c---------------------------------CCCChHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            00000          0                                 000001112222233221     13467778


Q ss_pred             HHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCC
Q psy3048         255 LRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPE  331 (367)
Q Consensus       255 ~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~  331 (367)
                      .++..++.+++.+.|++++   ++++..+.....+.+.+   .  ...+.+.+.++|+ .+.+       .+|+++.  .
T Consensus       312 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~---~--~~~~~~~l~~~gi-~v~~-------~~Ris~~--~  376 (394)
T 2ay1_A          312 RSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA---T--PEQVKRIKEEFGI-YMVG-------DSRINIA--G  376 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCC---C--HHHHHHHHHHHCE-ECCT-------TCEEEGG--G
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCC---C--HHHHHHHHHhCCE-EecC-------CCeEEee--c
Confidence            8888889999999888763   35544332223333322   1  2355556666774 3322       2699764  4


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy3048         332 TNQCDVAFAWNEISHQ  347 (367)
Q Consensus       332 ~~~edid~li~~l~~~  347 (367)
                      ++++|+++++++|+++
T Consensus       377 ~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          377 LNDNTIPILARAIIEV  392 (394)
T ss_dssp             CCTTTHHHHHHHHHHH
T ss_pred             CCHhhHHHHHHHHHHc
Confidence            6899999999999876

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.63  E-value=2.9e-14  Score=138.70  Aligned_cols=269  Identities=11%  Similarity=0.031  Sum_probs=154.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCc------------ceEEEecCCCC-----CcC--------HHHHHHHHHHHhhCCCcc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDV------------PVRQLRSDDNG-----VLR--------GDALLTAVKEDLAKGLIP   84 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~------------~v~~v~~~~~~-----~~d--------~~~L~~~l~~~~~~~~~~   84 (367)
                      +.+|+.+...|.+...++...|.            .++.++.+..+     .+|        +++|++++++...  ..+
T Consensus       143 ~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~--~~~  220 (449)
T 3a8u_X          143 TKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDA--SNI  220 (449)
T ss_dssp             CEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCG--GGE
T ss_pred             CEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCC--CCE
Confidence            45666677777666656555442            35556543222     246        9999999975310  012


Q ss_pred             EEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-Ccc
Q psy3048          85 CCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDC  159 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~  159 (367)
                      .+|+++..++++|.+.|    +++|.++|++||+++++|++|+++......+.....++ ..|++++  .|++++. ..+
T Consensus       221 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~~  297 (449)
T 3a8u_X          221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TPDLMCI--AKQVTNGAIPM  297 (449)
T ss_dssp             EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSSCC
T ss_pred             EEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CCCEEEE--cccccCCCCce
Confidence            45666655567898888    99999999999999999999964332211111111122 2476644  5998753 348


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |+++.++ +..........+   ....       .+                    .       ...+. .+..+.+.++
T Consensus       298 G~~~~~~-~~~~~l~~~~~~---~~~~-------~~--------------------~-------~~~t~-~~~~~~~aa~  338 (449)
T 3a8u_X          298 GAVIAST-EIYQTFMNQPTP---EYAV-------EF--------------------P-------HGYTY-SAHPVACAAG  338 (449)
T ss_dssp             EEEEEEH-HHHHHHHTCSSC---TTSC-------SS--------------------C-------CCCTT-TTCHHHHHHH
T ss_pred             EEEEECH-HHHHHhhccCcc---cccc-------cc--------------------c-------ccCCC-cccHHHHHHH
Confidence            8888754 333221110000   0000       00                    0       00000 0111222333


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe--CCCCceeEEEEEcCCc--h--HHHHHHHHHhccCcEEEE
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELV--CPPSMGLVCFRLKGDN--D--LTNQLYERLMSHKQIYII  313 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~--~~~~~~~v~f~~~~~~--~--~~~~l~~~L~~~g~~~~~  313 (367)
                      .++++.+..+   ++.++..++.++++++|++++++.++  .++..+++.+.++...  .  ...++.+.|.++|+ .+.
T Consensus       339 ~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv-~v~  414 (449)
T 3a8u_X          339 LAALCLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGF-YVR  414 (449)
T ss_dssp             HHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTE-ECE
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCc-EEe
Confidence            4445544332   45667788888888888775322211  1233456777775421  1  23368888888884 444


Q ss_pred             EeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         314 KASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       314 ~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.   + .++|+++ ...++++|+++++++|+++++++
T Consensus       415 ~~---g-~~iRis~-~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          415 FG---G-DTLQFGP-TFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             EE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cC---C-CEEEEEC-CCcCCHHHHHHHHHHHHHHHHHH
Confidence            33   3 6899965 45778999999999999998764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.62  E-value=7.1e-14  Score=135.51  Aligned_cols=263  Identities=12%  Similarity=-0.049  Sum_probs=150.0

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcce--------------EEEecCCCCCc-----CHHHHHHHHHHHhhCCCccEEEEEe
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPV--------------RQLRSDDNGVL-----RGDALLTAVKEDLAKGLIPCCLVAT   90 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v--------------~~v~~~~~~~~-----d~~~L~~~l~~~~~~~~~~~~vv~~   90 (367)
                      +.+|+.+...|.+...++...|...              ..++.+.++..     |+++|++++++.  ....+.+|++.
T Consensus       131 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~  208 (439)
T 3dxv_A          131 SGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIE  208 (439)
T ss_dssp             CEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEEC
T ss_pred             CEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc--CCCCEEEEEEc
Confidence            4566666666776666655544322              33343322222     789999999511  11224577777


Q ss_pred             cCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEec
Q psy3048          91 LGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus        91 ~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      .+++++|.+.|    +++|.++|++||+++++|++|+++............++ ..|++  +..|.++++..+|+++.+.
T Consensus       209 p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~--s~sK~~~~G~riG~~~~~~  285 (439)
T 3dxv_A          209 PIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDIL--VLGKGLGGGLPLSAVIAPA  285 (439)
T ss_dssp             SSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEE--EECGGGGTTSCCEEEEEEH
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEE--EEcchhcCCcceEEEEECH
Confidence            77888899988    99999999999999999999975322111111111222 24666  4569998666688887743


Q ss_pred             chhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh
Q psy3048         167 ANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY  246 (367)
Q Consensus       167 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (367)
                       ..... +.       ....                                      ..+.  +..+...+..++++.+
T Consensus       286 -~~~~~-~~-------~~~~--------------------------------------~~t~--~~~~~~~aa~aal~~~  316 (439)
T 3dxv_A          286 -EILDC-AS-------AFAM--------------------------------------QTLH--GNPISAAAGLAVLETI  316 (439)
T ss_dssp             -HHHTS-CS-------SSSC--------------------------------------CTTT--TCHHHHHHHHHHHHHH
T ss_pred             -HHHhh-hc-------CCCc--------------------------------------CCCc--ccHHHHHHHHHHHHHH
Confidence             22221 10       0000                                      0000  0111122233334433


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEc-------CCchHHHHHHHHHhccCcEEEEEe
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLK-------GDNDLTNQLYERLMSHKQIYIIKA  315 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~-------~~~~~~~~l~~~L~~~g~~~~~~~  315 (367)
                      ..   ++..++..++.+++++.|++    ++.+.... +..+.+.+.+.       +......++.+.|.++|.+ +.+.
T Consensus       317 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~  391 (439)
T 3dxv_A          317 DR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIR-GRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLV-VYYV  391 (439)
T ss_dssp             HH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEE-CEEE
T ss_pred             Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcE-Eeec
Confidence            22   33445566666666666654    44444332 23344555542       1133456888889989854 4333


Q ss_pred             EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         316 SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       316 ~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      . ....++|+++ +...+++|+++++++|+++++++.+
T Consensus       392 ~-~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~  427 (439)
T 3dxv_A          392 G-MNGNVLEFTP-PLTITETDIHKALDLLDRAFSELSA  427 (439)
T ss_dssp             S-TTSCEEEECC-CTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             C-CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            2 2236899965 4566899999999999999987754

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.62  E-value=5e-15  Score=142.40  Aligned_cols=212  Identities=8%  Similarity=-0.052  Sum_probs=141.5

Q ss_pred             EEEecC-CcchhHHHHH----------HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEec----CCCcc
Q psy3048          32 VAYASD-QSNSSVEKSA----------IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATL----GTTGT   96 (367)
Q Consensus        32 ~v~~s~-~~H~s~~~~~----------~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~----~~t~~   96 (367)
                      .|++++ ..|......+          +..|++++.++.++++.+|+++|++++++.+      .+|++++    ++|++
T Consensus       103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~t------klV~i~~s~g~p~npt  176 (409)
T 3jzl_A          103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKT------KMIGIQRSRGYADRPS  176 (409)
T ss_dssp             EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTE------EEEEEECSCTTSSSCC
T ss_pred             EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCC------eEEEEECCCCCCCCCc
Confidence            455555 7777776433          4568999999998889999999999997655      4888888    99999


Q ss_pred             cccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC--cceeEEEecchhhhh
Q psy3048          97 CAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH--DCSAMWVKNANHLTN  172 (367)
Q Consensus        97 G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~--g~g~l~~~~~~~~~~  172 (367)
                      |.+.|+++|+++||+  ||+++++|++|+.+.+......   .   .+|+++.++||+++++.  ..|+++. +++.+++
T Consensus       177 g~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~---g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~  249 (409)
T 3jzl_A          177 FTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---V---GADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDL  249 (409)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---G---TCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHH
T ss_pred             CccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---c---CCeEEEECccccCCccCCceEEEEEe-CHHHHHH
Confidence            999999999999999  9999999999987653222111   1   35999999999998753  2366555 4444433


Q ss_pred             hccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH
Q psy3048         173 TFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL  251 (367)
Q Consensus       173 ~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  251 (367)
                      .... ..+++....                                             +....  ..++.++  +..-.
T Consensus       250 l~~~~~~~~~g~~~---------------------------------------------g~~~~--~~~~~l~--gl~~~  280 (409)
T 3jzl_A          250 CGYRLTTPGIGREA---------------------------------------------GASLY--SLLEMYQ--GFFLA  280 (409)
T ss_dssp             HHHHHSCTTTGGGC---------------------------------------------CCCTT--CHHHHHH--HHHHH
T ss_pred             HHHHhccccccccc---------------------------------------------cccHH--HHHHHHH--HHhhH
Confidence            2110 111110000                                             00000  0122222  22334


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCce-----eEEEEEcCCchHHHHHHHHHhccC
Q psy3048         252 QAYLRKHISLAKKFADLVEKDDRFELVCPPSMG-----LVCFRLKGDNDLTNQLYERLMSHK  308 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~-----~v~f~~~~~~~~~~~l~~~L~~~g  308 (367)
                      ..++++..+++.++.+.|+++ |+++... ...     ++.|.+.+ .+...++++.|....
T Consensus       281 ~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~  339 (409)
T 3jzl_A          281 PHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAAS  339 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcC
Confidence            667788899999999999998 6787432 222     67787764 555667888887654

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.61  E-value=8.5e-14  Score=136.49  Aligned_cols=284  Identities=13%  Similarity=0.065  Sum_probs=160.3

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc-----------ceEEEecCCCCC----cC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV-----------PVRQLRSDDNGV----LR   66 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~-----------~v~~v~~~~~~~----~d   66 (367)
                      .||+++|++.... +  .+       .++.+|.....-|-....+....|.           .+..++....++    .|
T Consensus       131 ~aik~a~~~~~~~-g--~~-------~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~  200 (472)
T 3hmu_A          131 TNIRMVRTYWQNK-G--QP-------EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMD  200 (472)
T ss_dssp             HHHHHHHHHHHHT-T--CT-------TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCC
T ss_pred             HHHHHHHHHHHhc-C--CC-------CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccC
Confidence            4677777765422 1  01       1244555566666655555444332           345555322111    34


Q ss_pred             --------HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhh
Q psy3048          67 --------GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAH  134 (367)
Q Consensus        67 --------~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~  134 (367)
                              +++|++++++...  ..+.+|++...+++.|.+.|    +++|.++|++||+++++|++|.++......+..
T Consensus       201 ~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~  278 (472)
T 3hmu_A          201 PEEFGLARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGT  278 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchh
Confidence                    7889988874311  11356666666777788877    999999999999999999999865332211111


Q ss_pred             hhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhcc
Q psy3048         135 LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLN  213 (367)
Q Consensus       135 ~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (367)
                      ...++ ..|+++++  |.+.++ ..+|+++.+. +... .+.. ..+. ...        .|                  
T Consensus       279 ~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~-~i~~-~~~~-~~~~-~~~--------t~------------------  325 (472)
T 3hmu_A          279 QTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCD-EVAH-VIGK-DEFN-HGY--------TY------------------  325 (472)
T ss_dssp             HHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEH-HHHH-HHTT-SCBC-CCC--------TT------------------
T ss_pred             HHhCC-CCceeeec--hhhhcCCcceEEEEECH-HHHH-hccc-CCcc-ccC--------CC------------------
Confidence            11233 34887765  988776 4778888743 3222 2210 0000 000        00                  


Q ss_pred             CCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHhcC---CCCeEEeCCCCceeEEEE
Q psy3048         214 CSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHI-SLAKKFADLVEK---DDRFELVCPPSMGLVCFR  289 (367)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~-~la~~l~~~L~~---~~g~~~~~~~~~~~v~f~  289 (367)
                                      .+..+.+.+..++|+.+..+   ++.++.. ++.+++++.|++   ++.+..+. +...++.+.
T Consensus       326 ----------------~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~  385 (472)
T 3hmu_A          326 ----------------SGHPVAAAVALENLRILEEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAK-IVGMMASIA  385 (472)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHHHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEE-EETTEEEEE
T ss_pred             ----------------CCCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCceEEEE
Confidence                            01112223334445444333   3445555 666666666654   34444332 233455566


Q ss_pred             EcCC-----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q psy3048         290 LKGD-----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRG  356 (367)
Q Consensus       290 ~~~~-----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~~  356 (367)
                      +...           .....++.+.|.++|.+.. +.   + .++|+++ ....+++|+++++++|+++++++.....
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~-~~---g-~~iRi~p-~~~~t~e~i~~~l~~l~~~l~~~~~~~~  457 (472)
T 3hmu_A          386 LTPNKASRAKFASEPGTIGYICRERCFANNLIMR-HV---G-DRMIISP-PLVITPAEIDEMFVRIRKSLDEAQAEIE  457 (472)
T ss_dssp             ECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCE-EE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCccccccccchhHHHHHHHHHHHHHCCcEEE-ec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432           1225678888999996433 22   3 6999964 4567899999999999998887654433

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.61  E-value=7.2e-15  Score=143.18  Aligned_cols=260  Identities=13%  Similarity=0.059  Sum_probs=156.5

Q ss_pred             eEEEecCCcchhHHHHHH----hCCcceEEEec-CC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC--
Q psy3048          31 LVAYASDQSNSSVEKSAI----IGDVPVRQLRS-DD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN--  101 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~-~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d--  101 (367)
                      -.|++++.+|.++...++    ..|++++.++. ++  ++.+|+++|++++++...   ..+++++++++|+||.+-+  
T Consensus       146 d~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~---~~~~v~~~~p~NPtG~~~~~~  222 (448)
T 3meb_A          146 AEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPE---KSIFLFHACAHNPSGIDFTEA  222 (448)
T ss_dssp             CCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHH
T ss_pred             CEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCC---CcEEEEeCCCCCCCCcCCCHH
Confidence            357778899999999999    89999999998 55  489999999999986311   1367888999999999865  


Q ss_pred             -hhhHHHHHhhcCcEEEEecccccccccCh---hhhhh-hCCCCCcceeeeccccccccC-CcceeE--EE--------e
Q psy3048         102 -LEELGPICQEYNIWLHVDAAYAGSALLLP---EYAHL-KRGLEYVDSFAFNAHKWLLTN-HDCSAM--WV--------K  165 (367)
Q Consensus       102 -l~~I~~l~~~~gi~l~vD~a~~~~~~~~~---~~~~~-~~~~~~~D~~~~~~hK~l~~p-~g~g~l--~~--------~  165 (367)
                       +++|+++|++||+++++|++|+.+.+...   ..... +.+...-.+++.+.+|.++.| ..+|++  +.        .
T Consensus       223 ~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~  302 (448)
T 3meb_A          223 QWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEK  302 (448)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHH
T ss_pred             HHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccC
Confidence             55699999999999999999887554321   01000 101111246688899998743 457887  44        3


Q ss_pred             cchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH
Q psy3048         166 NANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS  245 (367)
Q Consensus       166 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (367)
                      ++.........-.......                                           ....+.+.+..+...+..
T Consensus       303 ~~~~~~~l~~~l~~~~~~~-------------------------------------------~~~~~~~~~~a~~~~l~~  339 (448)
T 3meb_A          303 NKALSAAMVSGMTLQIRKT-------------------------------------------WSMSAIHGAYIVQVIVHD  339 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-------------------------------------------TSSCCHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHhcc-------------------------------------------cCCccHHHHHHHHHHhcC
Confidence            3311111100000000000                                           000000111122222211


Q ss_pred             h-----hHHHHHHHHHHHHHHHHHHHHHhcCC--CC------eEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEE
Q psy3048         246 Y-----GLKGLQAYLRKHISLAKKFADLVEKD--DR------FELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIY  311 (367)
Q Consensus       246 ~-----~~~g~~~~~~~~~~la~~l~~~L~~~--~g------~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~  311 (367)
                      .     ..+.+++..++..++++++.+.|+++  ++      +.... |..+.+.|  .+.   +.++...|.+ .| ++
T Consensus       340 ~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-~~~g~~~~--~~~---~~~~~~~ll~~~g-V~  412 (448)
T 3meb_A          340 KRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHIL-TAIGMFTF--TGL---TPEHVDYLKEKWS-IY  412 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHH-HCCSSEEE--CCC---CHHHHHHHHHHHC-EE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeC-CCceEEEe--cCC---CHHHHHHHHHhCC-EE
Confidence            1     11446777788889999999999876  44      33322 23344433  121   2355666644 46 55


Q ss_pred             EEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         312 IIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       312 ~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +.++.      .|+++. . .++++|++++++|+++++++
T Consensus       413 v~~G~------gRis~a-~-~~~~~i~~~~~~l~~~l~~~  444 (448)
T 3meb_A          413 LVKAG------GRMSMC-G-LTESNCDYVAEAIHDAVTKL  444 (448)
T ss_dssp             ECSGG------GEEEGG-G-CCTTTHHHHHHHHHHHHHHS
T ss_pred             EeCCC------cEEEEe-c-CCHHHHHHHHHHHHHHHHhc
Confidence            54321      299763 2 24567999999999998754

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.61  E-value=1.1e-15  Score=145.96  Aligned_cols=255  Identities=15%  Similarity=0.083  Sum_probs=154.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      -.|++.+.+|.++...++..|++++.++.+  +++.+|+++|++++++...   ...++++++++|++|.+.   ++++|
T Consensus       121 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~l  197 (396)
T 2q7w_A          121 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA---GDVVLFHGCCHNPTGIDPTLEQWQTL  197 (396)
T ss_dssp             CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT---TCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence            356677889999999999999999999984  5788999999999975311   125788899999999985   46689


Q ss_pred             HHHHhhcCcEEEEecccccccccC--h--hhhhhhCCCCCcceeeecccccccc-CCcceeEEE--ecchhhhhhccCCc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLL--P--EYAHLKRGLEYVDSFAFNAHKWLLT-NHDCSAMWV--KNANHLTNTFFTDR  178 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~--~--~~~~~~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~--~~~~~~~~~~~~~~  178 (367)
                      +++|++||+++++|++|+.+.+..  +  .... +......++++.+.+|.++. +..+|+++.  .+++.++.....-.
T Consensus       198 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~  276 (396)
T 2q7w_A          198 AQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMK  276 (396)
T ss_dssp             HHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH-HHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEecccccccCCccchhHHHHH-HHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHH
Confidence            999999999999999998754421  1  1111 10011125778889999873 334788886  23321111100000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-----hHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-----GLKGLQA  253 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~g~~~  253 (367)
                      ... ...         +                                 .....+....+..++...     ..+.+++
T Consensus       277 ~~~-~~~---------~---------------------------------~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~  313 (396)
T 2q7w_A          277 AAI-RAN---------Y---------------------------------SNPPAHGASVVATILSNDALRAIWEQELTD  313 (396)
T ss_dssp             HHH-HTT---------T---------------------------------SSCCHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             HHH-hhc---------c---------------------------------CCCCcHHHHHHHHHhcChhhHHHHHHHHHH
Confidence            000 000         0                                 000001111222222211     1246677


Q ss_pred             HHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      ..++..++.+++.+.|++++   ++++.. |..+.+.+ +.. .  ...+.+.+.++|+ .+.+       .+|+++.. 
T Consensus       314 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~-~~~-~--~~~~~~~l~~~gv-~v~~-------~~Ris~~~-  379 (396)
T 2q7w_A          314 MRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSF-SGL-T--KEQVLRLREEFGV-YAVA-------SGRVNVAG-  379 (396)
T ss_dssp             C-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEE-CCC-C--HHHHHHHHHHHCE-ECCT-------TCEEEGGG-
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEE-ecC-C--HHHHHHHHHhcCe-eecC-------CceEEEee-
Confidence            77888899999999998874   355433 33333332 111 1  2345555666774 3332       26997642 


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       331 ~~~~edid~li~~l~~~  347 (367)
                       .+++|+++++++|+++
T Consensus       380 -~~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          380 -MTPDNMAPLCEAIVAV  395 (396)
T ss_dssp             -CCTTTHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHhc
Confidence             3789999999999875

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.60  E-value=1.7e-14  Score=139.30  Aligned_cols=211  Identities=11%  Similarity=0.056  Sum_probs=140.9

Q ss_pred             EEEecC-CcchhHHH-----------HHHhCCcceEEEecCCCCCcCHHHHHHHHH--HHhhCCCccEEEEEec----CC
Q psy3048          32 VAYASD-QSNSSVEK-----------SAIIGDVPVRQLRSDDNGVLRGDALLTAVK--EDLAKGLIPCCLVATL----GT   93 (367)
Q Consensus        32 ~v~~s~-~~H~s~~~-----------~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~--~~~~~~~~~~~vv~~~----~~   93 (367)
                      .|++++ ..|.....           .+...|++++.++.++++.+|+++|+++++  +.+      .+|++++    ++
T Consensus       117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~t------klV~i~~s~~~p~  190 (427)
T 3i16_A          117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESI------TLVHIQRSTGYGW  190 (427)
T ss_dssp             EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTE------EEEEEECSCCSSS
T ss_pred             EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCC------EEEEEEcCCCCCC
Confidence            455555 66766553           334568999999998889999999999998  444      5788888    89


Q ss_pred             CcccccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC--CcceeEEEecchh
Q psy3048          94 TGTCAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN--HDCSAMWVKNANH  169 (367)
Q Consensus        94 t~~G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~g~l~~~~~~~  169 (367)
                      |++|.+.|+++|+++||+  +|++++||++|+.+.+......   .   .+|+++.++||+++++  +..|+++.+ ++.
T Consensus       191 nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~---~---gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~l  263 (427)
T 3i16_A          191 RRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---V---GADLIAGSLIKNIGGGIAPTGGYLAGT-KDC  263 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG---G---TCSEEEEETTSGGGTTTCCSCEEEEEC-HHH
T ss_pred             CCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc---c---CCeEEEecCcccCCCCCCceEEEEEEC-HHH
Confidence            999999999999999999  9999999999987653322211   1   3599999999999873  234666664 443


Q ss_pred             hhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH
Q psy3048         170 LTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL  248 (367)
Q Consensus       170 ~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (367)
                      +.+.... ..+.+..                                             ..+..+.  ..+..++  +.
T Consensus       264 i~~l~~~~~~~~~g~---------------------------------------------~~~~~~~--~a~~~l~--gl  294 (427)
T 3i16_A          264 IEKTSYRLTVPGIGG---------------------------------------------ECGSTFG--VVRSMYQ--GL  294 (427)
T ss_dssp             HHHHHHHHSCTTTGG---------------------------------------------GCCCCTT--CHHHHHH--HH
T ss_pred             HHHHHHhcccCccCc---------------------------------------------cCCccHH--HHHHHHH--HH
Confidence            4332110 0000000                                             0000011  0122222  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCce-----eEEEEEcCCchHHHHHHHHHhcc
Q psy3048         249 KGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMG-----LVCFRLKGDNDLTNQLYERLMSH  307 (367)
Q Consensus       249 ~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~-----~v~f~~~~~~~~~~~l~~~L~~~  307 (367)
                      .-...++++..+.+.++.+.|+++ |+++. |....     ++.|.+.+ .+...++++.|...
T Consensus       295 ~~~~~r~~~~~~~a~~la~~L~~~-g~~V~-p~~~~~~~~~i~~i~l~~-~~~~~~f~~~l~~~  355 (427)
T 3i16_A          295 FLAPHISMEALKGAILCSRIMELA-GFEVM-PKYDEKRSDIIQSIKFND-KDKLIEFCKGIQTG  355 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-TCEEE-SCTTSCCSSSCEEEECSS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCeec-CCCCCCCccEEEEEEECC-HHHHHHHHHHHhhc
Confidence            344677788999999999999998 66774 32333     77888864 45566788887754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.59  E-value=1e-12  Score=128.34  Aligned_cols=234  Identities=12%  Similarity=0.026  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      +++|++++++...  ..+.+|++...+++.|.+.+    +++|.++|++||+++++|++|+++......+.....++ ..
T Consensus       207 ~~~le~~i~~~~~--~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~p  283 (460)
T 3gju_A          207 ADKLEEMILAEGP--ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KP  283 (460)
T ss_dssp             HHHHHHHHHHHCG--GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CC
T ss_pred             HHHHHHHHHhcCC--CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CC
Confidence            6889998874211  11356777766777777665    99999999999999999999986533221111111233 34


Q ss_pred             ceeeeccccccccC-CcceeEEEecchhhhhhccC--CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCC
Q psy3048         143 DSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFT--DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPG  219 (367)
Q Consensus       143 D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~--~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (367)
                      |+++++  |.+.++ ..+|+++.+++ ........  ....+...        ..|                        
T Consensus       284 di~t~s--K~l~gG~~~lg~v~~~~~-i~~~~~~~~~~~~~~~~~--------~t~------------------------  328 (460)
T 3gju_A          284 DLITIA--KGLTSAYAPLSGVIVADR-VWQVLVQGSDKLGSLGHG--------WTY------------------------  328 (460)
T ss_dssp             SEEEEC--GGGTTTSSCCEEEEEEHH-HHHHHHHHHHHHCSCSCC--------CTT------------------------
T ss_pred             Ceeeee--hhhcCCCCCeEEEEECHH-HHHHHhcccccccccccC--------CCC------------------------
Confidence            777654  998776 47788887543 22211000  00000000        000                        


Q ss_pred             CCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCc----
Q psy3048         220 GGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDN----  294 (367)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~----  294 (367)
                                .+..+.+.+..++|+.+..+. +++..+....+.+.+.+.+++++.+..+. +...++.+.+....    
T Consensus       329 ----------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~  397 (460)
T 3gju_A          329 ----------SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR-GDGMLAAVEFVADKDDRV  397 (460)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTB
T ss_pred             ----------CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-eeeEEEEEEEccCccccc
Confidence                      011112233344455443333 33333344444555555566666554432 22344555554311    


Q ss_pred             ------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         295 ------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       295 ------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                            ....++.+.|.++|.+ +.+..  +..++|+++ ....+++|+++++++|+++++++..
T Consensus       398 ~~~~~~~~~~~~~~~l~~~Gv~-v~~~~--~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          398 FFDASQKIGPQVATALAASGVI-GRAMP--QGDILGFAP-PLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             CCCGGGCHHHHHHHHHHHTTEE-CEECS--SSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccchHHHHHHHHHHHHHCCeE-EecCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                  1255788889999854 33322  346999964 4566899999999999999987654

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.58  E-value=1.1e-13  Score=135.15  Aligned_cols=279  Identities=9%  Similarity=-0.019  Sum_probs=159.2

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCc-eEEEecCCcchhHHHHHHhCC-------------cceEEEecC--CCCCc
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSR-LVAYASDQSNSSVEKSAIIGD-------------VPVRQLRSD--DNGVL   65 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~s~~~H~s~~~~~~~~g-------------~~v~~v~~~--~~~~~   65 (367)
                      .||+++|+++..+    +       ..++ .+|..+..-|-....+....+             ..+..++..  .....
T Consensus       150 ~Alk~a~~~~~~~----g-------~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  218 (457)
T 3tfu_A          150 VAAKMALQYWRGR----G-------LPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPA  218 (457)
T ss_dssp             HHHHHHHHHHHHT----T-------CTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHH
T ss_pred             HHHHHHHHHHHhc----C-------CCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHH
Confidence            3677777766533    1       0223 455555555555444443311             133444432  22335


Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEec-CCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      |+++|++++++...   .+.+|++.. .++++|.+.|    +++|.++|++||+++++|++|.++......+.....++ 
T Consensus       219 d~~~le~~l~~~~~---~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-  294 (457)
T 3tfu_A          219 YSAAFEAQLAQHAG---ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGV-  294 (457)
T ss_dssp             HHHHHHHHHHHHGG---GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-
T ss_pred             HHHHHHHHHHhCCC---CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCC-
Confidence            88999999985321   134666666 6788888866    99999999999999999999976432211111111122 


Q ss_pred             CcceeeeccccccccC-CcceeEEEecchhhhhhccCCc-cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDR-VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP  218 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (367)
                      ..|++++  .|.+.++ ..+|+++.+++ .........+ .+....         .|                       
T Consensus       295 ~pdiit~--sK~l~gG~~~lG~v~~~~~-i~~~~~~~~~~~~~~~~---------t~-----------------------  339 (457)
T 3tfu_A          295 SPDIMCV--GKALTGGYLSLAATLCTAD-VAHTISAGAAGALMHGP---------TF-----------------------  339 (457)
T ss_dssp             CCSEEEE--CGGGGTTSSCCEEEEEEHH-HHHHHHHSSSCSCCCCC---------TT-----------------------
T ss_pred             CceEEEE--ChhhhCCCcceEEEEEcHH-HHHHhhccCCCceeEec---------CC-----------------------
Confidence            3477755  5888876 37888887543 2221100000 000000         00                       


Q ss_pred             CCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCch
Q psy3048         219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDND  295 (367)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~  295 (367)
                                 .++.+.+.+..++|+.+..+   ++.++..++.++++++|+++   +++..+. +...++.+.+.. ..
T Consensus       340 -----------~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr-~~G~~~~i~l~~-~~  403 (457)
T 3tfu_A          340 -----------MANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDVR-VCGAIGVIECDR-PV  403 (457)
T ss_dssp             -----------TTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEEE-ECSSCEEEEESS-CC
T ss_pred             -----------CcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeeee-cCCeEEEEEECC-cc
Confidence                       01111223333444444333   44556777788888877664   4554332 233556666654 22


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ...++.++|.++|++ +.+    ...++|+++ ....+++|+++++++|+++++++.
T Consensus       404 ~~~~~~~~l~~~Gv~-v~~----~~~~lRi~p-~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          404 DLAVATPAALDRGVW-LRP----FRNLVYAMP-PYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             CHHHHHHHHHHTTEE-CCC----BTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHCCeE-EEe----cCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            357899999999843 332    125899954 455689999999999999988754

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.58  E-value=8.1e-14  Score=135.77  Aligned_cols=236  Identities=13%  Similarity=0.080  Sum_probs=140.1

Q ss_pred             ceEEEecCC--CC--------CcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEE
Q psy3048          53 PVRQLRSDD--NG--------VLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHV  118 (367)
Q Consensus        53 ~v~~v~~~~--~~--------~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~v  118 (367)
                      +++.++.++  ..        ..++++|++++++..   ....+|+++..++++|.+.+    +++|.++|++||+++++
T Consensus       194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~  270 (449)
T 2cjg_A          194 PRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP---HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF  270 (449)
T ss_dssp             CEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST---TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC---CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence            566676644  11        256777998886421   11346666666678898777    99999999999999999


Q ss_pred             ecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhh
Q psy3048         119 DAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVM  198 (367)
Q Consensus       119 D~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  198 (367)
                      |++|+++......+.....++ ..|+++++  |++  |  +|+++.++ +.....   .+.++.....   .        
T Consensus       271 DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l--~--iG~~~~~~-~~~~~l---~~~~~~~~~~---~--------  328 (449)
T 2cjg_A          271 DEVQTGCGLTGTAWAYQQLDV-APDIVAFG--KKT--Q--VCGVMAGR-RVDEVA---DNVFAVPSRL---N--------  328 (449)
T ss_dssp             ECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGG--S--SEEEEECG-GGGGST---TCTTTSTTSS---C--------
T ss_pred             eccccCCCccCcceeecccCC-CceEEEec--Ccc--c--EEEEEECH-HHhhhh---hhcccCCccc---c--------
Confidence            999986433211111111122 34777654  988  4  78888754 322211   0001100000   0        


Q ss_pred             hhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCC
Q psy3048         199 NWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDR  274 (367)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g  274 (367)
                                                  .+-.++.+.+.+..++++.+..   +++.++..++.+++.++|++    ++.
T Consensus       329 ----------------------------~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~  377 (449)
T 2cjg_A          329 ----------------------------STWGGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAADFPA  377 (449)
T ss_dssp             ----------------------------CSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             ----------------------------cCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence                                        0001111223344445554433   34556777888888888865    344


Q ss_pred             -eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         275 -FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       275 -~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                       +.... +..+++.+.+.. .....++.++|.++|.+ +.+.   +..++|+++ +..++++|+++++++|+++++++
T Consensus       378 ~~~~~~-~~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~-v~~~---g~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          378 VVLDPR-GRGLMCAFSLPT-TADRDELIRQLWQRAVI-VLPA---GADTVRFRP-PLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             TSEEEE-EETTEEEEECSS-HHHHHHHHHHHHHTTEE-CEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeEe-eccEEEEEEECC-hHHHHHHHHHHHHCCeE-EecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence             43332 334566666653 23456889999888844 3332   346999964 56778999999999999988754

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.58  E-value=9.4e-13  Score=128.17  Aligned_cols=227  Identities=11%  Similarity=0.048  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecC-CCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++|++++++..  .....+|++..+ +| +|.+.|    +++|.++|++||+++++|++|.++......+.....++ .
T Consensus       201 ~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~  276 (452)
T 3n5m_A          201 VKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-K  276 (452)
T ss_dssp             HHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-C
T ss_pred             HHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-C
Confidence            899999997211  111346666666 68 998876    99999999999999999999986433221111111233 2


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccC---CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFT---DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                      .|++++  .|.+..+ .++|+++.++ +... .+..   ...++...                                 
T Consensus       277 ~di~t~--sK~l~~G~~~ig~~~~~~-~i~~-~~~~~~~~~~~~~~~---------------------------------  319 (452)
T 3n5m_A          277 PDIITM--AKGITSAYLPLSATAVKR-EIYE-AFKGKGEYEFFRHIN---------------------------------  319 (452)
T ss_dssp             CSEEEE--CGGGGTTSSCCEEEEEEH-HHHG-GGCSSSTTCSCCCCC---------------------------------
T ss_pred             CCEEee--cccccCCCcceEEEEECH-HHHH-HHhhccCCCCccccC---------------------------------
Confidence            477765  4888776 6788888743 3222 2211   01111000                                 


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh----cCCCCeEEeCCCCceeEEEEEcCC
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV----EKDDRFELVCPPSMGLVCFRLKGD  293 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L----~~~~g~~~~~~~~~~~v~f~~~~~  293 (367)
                               + -.+..+.+.+..++++.+..+   +..++..++.+++++.|    .+++.+..+.. ....+.+.+...
T Consensus       320 ---------t-~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~i~~~~~  385 (452)
T 3n5m_A          320 ---------T-FGGNPAACALALKNLEIIENE---NLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLVGIELVND  385 (452)
T ss_dssp             ---------S-STTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCEEEEEEEE
T ss_pred             ---------C-CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEEEEEEecC
Confidence                     0 001112223333444443333   33344455555555554    45555544322 223334443210


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                              .....++.+.|.++|.+ +.+...   ....++|+++ ....+++|+++++++|++++++
T Consensus       386 ~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          386 KETKEPIDNDKIASVVNACKEKGLI-IGRNGMTTAGYNNILTLAP-PLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             TTTTEECCHHHHHHHHHHHHHTTEE-CEECTTSSTTCCCEEEECC-CTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CcccCCCCHHHHHHHHHHHHHCCcE-EeecCcccCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence                    11235788888989854 333211   1257999964 4567899999999999998753

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.58  E-value=7.2e-14  Score=135.16  Aligned_cols=230  Identities=12%  Similarity=0.039  Sum_probs=133.6

Q ss_pred             cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          65 LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        65 ~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      +|+++|++++++..  ...+.+|+++..++++|.+.|    +++|.++|++||+++++|++|+++......+.....++ 
T Consensus       187 ~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-  263 (433)
T 1zod_A          187 AELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-  263 (433)
T ss_dssp             HHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-
T ss_pred             HHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-
Confidence            46999999997531  011345555544467897666    99999999999999999999985432211111111122 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|++++  .|+++.+.++|+++.++ +....... . .+....         .+                         
T Consensus       264 ~~di~s~--sK~~~~G~~ig~~~~~~-~~~~~~~~-~-~~~~~~---------t~-------------------------  304 (433)
T 1zod_A          264 TPDILTL--SKTLGAGLPLAAIVTSA-AIEERAHE-L-GYLFYT---------TH-------------------------  304 (433)
T ss_dssp             CCSEEEE--CHHHHTTSSCEEEEECH-HHHHHHHH-T-TCCCCC---------TT-------------------------
T ss_pred             CCCEEEe--cccccCCCCeeEEEEhH-HHHHhhcc-C-CCCCCC---------CC-------------------------
Confidence            2466544  59998777789988854 32322111 0 000000         00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcCC---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKGD---  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~~---  293 (367)
                               .++.+...+..++++.+..+   +..++..++.+++.++|++    ++.+... ++..+++.+.+...   
T Consensus       305 ---------~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~  371 (433)
T 1zod_A          305 ---------VSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRT  371 (433)
T ss_dssp             ---------TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT
T ss_pred             ---------CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc
Confidence                     01112223334455544333   3455666777777777765    3444332 23344555655421   


Q ss_pred             ----chHHHHHHHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 ----NDLTNQLYERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 ----~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                          .....++.+.|.++|.+ +.+.... +..++|+++ +...+++|+++++++|+++++++
T Consensus       372 ~~~~~~~~~~~~~~l~~~Gv~-v~~~~~~~~~~~lRi~~-~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          372 KEPADGLGAKITRECMNLGLS-MNIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             TEECTTHHHHHHHHHHHTTEE-CCEECCTTSCCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHCCCe-EeccCCCCCCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHh
Confidence                12356788889888843 4333222 236899964 45678999999999999988764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.56  E-value=2.5e-12  Score=125.12  Aligned_cols=230  Identities=10%  Similarity=0.062  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCC-CcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGT-TGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~-t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      |+++|+++++....   .+.+|++.... ++.|.+.+    +++|.++|++||+++++|++|+++......+.....++ 
T Consensus       196 d~~~le~~l~~~~~---~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~-  271 (448)
T 3dod_A          196 CLRELAQLLEEHHE---EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV-  271 (448)
T ss_dssp             HHHHHHHHHHHHGG---GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred             HHHHHHHHHHhCCC---CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-
Confidence            48999999973221   12456555555 77787765    99999999999999999999986433221111111233 


Q ss_pred             CcceeeeccccccccCC-cceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNH-DCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPG  219 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (367)
                      ..|+++++  |.+.+++ .+|+++.++. ... .+..  .+-.....   ...                           
T Consensus       272 ~~di~t~s--K~l~~G~~~ig~v~~~~~-~~~-~~~~--~~~~~~~~---~~~---------------------------  315 (448)
T 3dod_A          272 QPDLMAAG--KGITGGYLPIAVTFATED-IYK-AFYD--DYENLKTF---FHG---------------------------  315 (448)
T ss_dssp             CCSEEEEC--GGGGTTSSCCEEEEEEHH-HHH-TTCS--CGGGCCCC---CCC---------------------------
T ss_pred             CCCEEEec--ccccCCcCceEEEEECHH-HHH-Hhhh--ccccCCcc---ccc---------------------------
Confidence            24776654  9998763 7788877532 222 1111  00000000   000                           


Q ss_pred             CCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc---CCCCeEEeCCCCceeEEEEEcCCch-
Q psy3048         220 GGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVE---KDDRFELVCPPSMGLVCFRLKGDND-  295 (367)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~---~~~g~~~~~~~~~~~v~f~~~~~~~-  295 (367)
                             ..-.+..+.+.+..++|+.+..+   ++.++.+++.+++++.|.   .++.+.... +...++.+.+..... 
T Consensus       316 -------~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~  384 (448)
T 3dod_A          316 -------HSYTGNQLGCAVALENLALFESE---NIVEQVAEKSKKLHFLLQDLHALPHVGDIR-QLGFMCGAELVRSKET  384 (448)
T ss_dssp             -------CTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTT
T ss_pred             -------CCCCcCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-eeeEEEEEEEccCccc
Confidence                   00001112223334444443332   334445555555555544   444443221 223355566543111 


Q ss_pred             ---------HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         296 ---------LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       296 ---------~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                               ...++.+.|.++|.+ +.+.   + .++|+++ +...+++|+++++++|+++++++.
T Consensus       385 ~~~~~~~~~~~~~~~~~l~~~Gv~-~~~~---~-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~  444 (448)
T 3dod_A          385 KEPYPADRRIGYKVSLKMRELGML-TRPL---G-DVIAFLP-PLASTAEELSEMVAIMKQAIHEVT  444 (448)
T ss_dssp             TBCCCGGGCHHHHHHHHHHHTTEE-CCEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHCCcE-Eecc---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence                     136788889999854 3332   3 6899964 456789999999999999988764

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.56  E-value=1.8e-14  Score=137.83  Aligned_cols=131  Identities=14%  Similarity=-0.002  Sum_probs=97.7

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++.+|.++...++..|++++.++.+  +++.+|++++++.+++..   ....++++++++|+||.+   +++++
T Consensus       123 gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~l~~  199 (401)
T 7aat_A          123 SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIP---EKSIILLHACAHNPTGVDPRQEQWKE  199 (401)
T ss_dssp             CCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSC---TTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCCCCCHHHHHH
Confidence            3456677889999999999999999999974  468999999998886521   124688999999999976   56889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChh-----hhhhhCCCCCcceeeeccccccccC-CcceeEEE
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPE-----YAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWV  164 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~  164 (367)
                      |+++|++||+++++|++|+.+.+....     ... +.....-.+++.+.+|.++.| ..+|+++.
T Consensus       200 i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~  264 (401)
T 7aat_A          200 LASVVKKRNLLAYFDMAYQGFASGDINRDAWALRH-FIEQGIDVVLSQSYAKNMGLYGERAGAFTV  264 (401)
T ss_dssp             HHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred             HHHHHHhCCcEEEEccccccccCCCccccHHHHHH-HHhcCCcEEEEecCCcccccccCceEEEEE
Confidence            999999999999999999766543210     110 001112257788999998743 45788876

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.56  E-value=6.1e-14  Score=135.81  Aligned_cols=212  Identities=10%  Similarity=0.024  Sum_probs=138.0

Q ss_pred             EEEecC-CcchhHHHHHHh----------CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEec----CCCcc
Q psy3048          32 VAYASD-QSNSSVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATL----GTTGT   96 (367)
Q Consensus        32 ~v~~s~-~~H~s~~~~~~~----------~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~----~~t~~   96 (367)
                      .|++++ ..|.+....+.+          .|++++.++.++++.+|+++|++++++.+      .+|+++.    +++++
T Consensus       109 ~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~t------k~V~i~~sp~np~~~~  182 (431)
T 3ht4_A          109 ELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNT------KMIGIQRSKGYATRPS  182 (431)
T ss_dssp             EEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTE------EEEEEECSCTTSSSCC
T ss_pred             EEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCC------eEEEEECCCCCCCCCc
Confidence            455555 788888876643          68999999998889999999999997654      4777775    66677


Q ss_pred             cccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeecccccccc---CCcceeEEEecchhhh
Q psy3048          97 CAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLT---NHDCSAMWVKNANHLT  171 (367)
Q Consensus        97 G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~---p~g~g~l~~~~~~~~~  171 (367)
                      |.+.|+++|+++|++  +|+++++|++|+.+.+......   .+   +|+++.+++|++++   |.| |+++.+ ++.++
T Consensus       183 ~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~---~g---~Di~~~S~sK~lgg~~~~~G-G~v~~~-~~li~  254 (431)
T 3ht4_A          183 FTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCH---VG---ADLMAGSLIKNPGGGIVKTG-GYIVGK-EQYVE  254 (431)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGG---TT---CSEEEEETTSGGGTTTCSSC-EEEEEC-HHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccc---cC---CeEEEcCccccCCCCCCCce-EEEEec-HHHHH
Confidence            778999999999999  9999999999988764332211   13   49999999999876   556 777764 33333


Q ss_pred             hhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH
Q psy3048         172 NTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG  250 (367)
Q Consensus       172 ~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  250 (367)
                      ..... ....+...                                             .+..+..  .+..++  +...
T Consensus       255 ~l~~~~~~~~~g~~---------------------------------------------~~~~~~~--~~~~~~--~l~~  285 (431)
T 3ht4_A          255 ACAYRLTSPGIGAE---------------------------------------------AGASLYS--LQEMYQ--GFFL  285 (431)
T ss_dssp             HHHHHHSCTTTTTS---------------------------------------------CSCCCSC--SHHHHH--HHHH
T ss_pred             HHHHHhccCCcccc---------------------------------------------cCccHHH--HHHHHh--Hhhh
Confidence            22100 00000000                                             0000000  011111  2233


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCeEEeCCC---Cc-eeEEEEEcCCchHHHHHHHHHhccC
Q psy3048         251 LQAYLRKHISLAKKFADLVEKDDRFELVCPP---SM-GLVCFRLKGDNDLTNQLYERLMSHK  308 (367)
Q Consensus       251 ~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~---~~-~~v~f~~~~~~~~~~~l~~~L~~~g  308 (367)
                      +..++++..++++++.+.|+++ |+++...+   .. .++.+.+.. .....++++.|.+..
T Consensus       286 ~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~-~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          286 APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDD-KDRMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCC-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCC-HHHHHHHHHHHHhcC
Confidence            4667778889999999999887 66664321   11 166777753 445567888877653

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.56  E-value=7.2e-14  Score=134.88  Aligned_cols=210  Identities=11%  Similarity=0.032  Sum_probs=137.1

Q ss_pred             EEEecC-CcchhHH-----------HHHHhCCcceEEEecCCCCCcCHHHHHHHHH--HHhhCCCccEEEEEec----CC
Q psy3048          32 VAYASD-QSNSSVE-----------KSAIIGDVPVRQLRSDDNGVLRGDALLTAVK--EDLAKGLIPCCLVATL----GT   93 (367)
Q Consensus        32 ~v~~s~-~~H~s~~-----------~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~--~~~~~~~~~~~vv~~~----~~   93 (367)
                      .|++++ ..|....           ..+...|++++.++. +++.+|+++|+++++  +.+      .+|++++    ++
T Consensus       118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~t------klV~i~~s~gyp~  190 (427)
T 3hvy_A          118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSI------KLIHIQRSTGYGW  190 (427)
T ss_dssp             EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTE------EEEEEESSCCSSS
T ss_pred             EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCC------EEEEEECCCCCCC
Confidence            445555 5666554           234457999999998 678999999999998  443      5888888    89


Q ss_pred             CcccccCChhhHHHHHhh--cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC--CcceeEEEecchh
Q psy3048          94 TGTCAFDNLEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN--HDCSAMWVKNANH  169 (367)
Q Consensus        94 t~~G~i~dl~~I~~l~~~--~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p--~g~g~l~~~~~~~  169 (367)
                      |++|.+.|+++|+++||+  +|++++||++|+.+.+......   .   .+|+++.+.||+++++  +..|+++.+ ++.
T Consensus       191 nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~---~---gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~l  263 (427)
T 3hvy_A          191 RKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---V---GADIIAGSLIKNIGGGIATTGGYIAGK-EEY  263 (427)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGG---G---TCSEEEEETTSGGGTTTCCSCEEEEEC-HHH
T ss_pred             CccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcc---c---CCeEEEECCcccccccccceEEEEEEC-HHH
Confidence            999999999999999999  8999999999987653322211   1   2599999999999873  233666654 444


Q ss_pred             hhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH
Q psy3048         170 LTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL  248 (367)
Q Consensus       170 ~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (367)
                      +++.... ..+.+..                                             ..+..+.  ..+..++  +.
T Consensus       264 i~~l~~~~~~~~~g~---------------------------------------------~~~~~~~--~a~~~~~--gl  294 (427)
T 3hvy_A          264 VTQATFRVTVPGIGG---------------------------------------------ECGSTFG--VMRSLYE--GL  294 (427)
T ss_dssp             HHHHHHHHSCTTTGG---------------------------------------------GCCCCTT--CHHHHHH--HH
T ss_pred             HHHHHHHhhcCCccc---------------------------------------------ccCCCHH--HHHHHHH--hH
Confidence            4332110 0000000                                             0000011  0122222  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCce-----eEEEEEcCCchHHHHHHHHHhcc
Q psy3048         249 KGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMG-----LVCFRLKGDNDLTNQLYERLMSH  307 (367)
Q Consensus       249 ~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~-----~v~f~~~~~~~~~~~l~~~L~~~  307 (367)
                      .-...++++..+++.++.+.|+++ |+++... ...     ++.|.+.+ .+...++++.|...
T Consensus       295 ~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l~~-~~~~~~f~~~l~~~  355 (427)
T 3hvy_A          295 FMAPHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKFND-EKKLIDFIKGIQTA  355 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEECSS-HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeCCC-HHHHHHHHHHhccc
Confidence            334567788899999999999998 6777432 223     77787754 45556788877654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.56  E-value=2.7e-12  Score=125.94  Aligned_cols=285  Identities=10%  Similarity=0.024  Sum_probs=162.6

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCc------------ceEEEecCCCC---CcC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDV------------PVRQLRSDDNG---VLR   66 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~------------~v~~v~~~~~~---~~d   66 (367)
                      .||+++|++...+ +..         .++.+|.....-|-....+....|.            .+..++....+   ..+
T Consensus       129 ~Aik~a~~~~~~~-g~~---------~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  198 (476)
T 3i5t_A          129 SALRFSEFYNNVL-GRP---------QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRS  198 (476)
T ss_dssp             HHHHHHHHHHHHT-TCT---------TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSC
T ss_pred             HHHHHHHHHHHhc-CCC---------CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCc
Confidence            4677787776432 101         1245566666666666555544332            23444432111   122


Q ss_pred             --------HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhh
Q psy3048          67 --------GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAH  134 (367)
Q Consensus        67 --------~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~  134 (367)
                              +++|++++++...  ..+.+|++..++++.|.+.+    +++|.++|++||+++++|++|+++......+..
T Consensus       199 ~~~~~~~~~~~le~~i~~~~~--~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~  276 (476)
T 3i5t_A          199 QEAFLDDLVQEFEDRIESLGP--DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFAS  276 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCC--CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceee
Confidence                    7899999875211  11356777777777787655    999999999999999999999865332211111


Q ss_pred             h-hCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCC----ccccccCCCCCCCCCCCchhhhhhcccCCCc
Q psy3048         135 L-KRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD----RVYLKHTDAPMNTQSPDYTVMNWLGKALGLP  208 (367)
Q Consensus       135 ~-~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~----~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (367)
                      . ..++ ..|+++++  |.+.++ ..+|+++.++ +... .+...    ..+....                        
T Consensus       277 ~~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~-~i~~-~~~~~~~~~~~~~~~~------------------------  327 (476)
T 3i5t_A          277 EKVFGV-VPDIITFA--KGVTSGYVPLGGLAISE-AVLA-RISGENAKGSWFTNGY------------------------  327 (476)
T ss_dssp             HHTTCC-CCSEEEEC--GGGGTTSSCCEEEEECH-HHHH-TTSGGGCTTCEECCCC------------------------
T ss_pred             ecccCC-Ccchhhhh--hhhcCCCcCeEEEEECH-HHHH-HHhcCCcccccccccC------------------------
Confidence            1 1233 35777665  998876 6778888743 3222 11100    0000000                        


Q ss_pred             chhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCcee
Q psy3048         209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGL  285 (367)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~  285 (367)
                                        +. .+..+.+.+..++|+.+..   +++.++..++.+++++.|+++   |.+..+. +...+
T Consensus       328 ------------------t~-~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~-~~G~~  384 (476)
T 3i5t_A          328 ------------------TY-SNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASLRDLPGVAETR-SVGLV  384 (476)
T ss_dssp             ------------------TT-TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEE-EETTE
T ss_pred             ------------------CC-CcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecCce
Confidence                              00 0111222333444544433   345566777777777777654   3343322 23344


Q ss_pred             EEEEEcCCc----------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         286 VCFRLKGDN----------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       286 v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      +.+.+....          ....++.+.|.++|.+ +.+.   + .++|+++ ....+++|+++++++|+++++++..+.
T Consensus       385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---g-~~iRi~p-~l~~t~e~i~~~l~~l~~~l~~~~~~~  458 (476)
T 3i5t_A          385 GCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLI-VRPL---G-DLCVISP-PLIISRAQIDEMVAIMRQAITEVSAAH  458 (476)
T ss_dssp             EEEEECCC-----CCHHHHHHHHHHHHHHHHTTEE-CEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEecCccccccccchhHHHHHHHHHHHHCCCE-EEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            455554321          1255788889989854 4332   3 6899964 456789999999999999998876544


Q ss_pred             C
Q psy3048         356 G  356 (367)
Q Consensus       356 ~  356 (367)
                      +
T Consensus       459 ~  459 (476)
T 3i5t_A          459 G  459 (476)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.54  E-value=5e-13  Score=130.48  Aligned_cols=230  Identities=13%  Similarity=0.079  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCc
Q psy3048          67 GDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV  142 (367)
Q Consensus        67 ~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~  142 (367)
                      +++|++++++...  ..+.+|++...+++.|.+.|    +++|.++|++||+++++|++|.++......+.....++ ..
T Consensus       205 ~~~le~~i~~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~p  281 (459)
T 4a6r_A          205 ARWLEEKILEIGA--DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QP  281 (459)
T ss_dssp             HHHHHHHHHHHCG--GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CC
T ss_pred             HHHHHHHHHHcCC--CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CC
Confidence            7889998875211  11346666666666777777    99999999999999999999976533221111111233 34


Q ss_pred             ceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         143 DSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       143 D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      |+++++  |.+.++ ..+|+++.+. +........ ..+...                                      
T Consensus       282 di~t~s--K~l~gg~~~lg~v~~~~-~i~~~~~~~-~~~~~~--------------------------------------  319 (459)
T 4a6r_A          282 DLFTAA--KGLSSGYLPIGAVFVGK-RVAEGLIAG-GDFNHG--------------------------------------  319 (459)
T ss_dssp             SEEEEC--GGGGTTSSCCEEEEECH-HHHHHHHHH-CTTHHH--------------------------------------
T ss_pred             Ceeehh--hhhcCCCCCccceeeCH-HHHHHhhcC-CCcccC--------------------------------------
Confidence            777764  988766 5788887743 322211000 000000                                      


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHH-HHHH-HHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC------
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGL-QAYL-RKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD------  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~-~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~------  293 (367)
                          .+. .+..+.+.+..++|+.+..+.+ ++.. ++...+.+.+.+.|.+++.+..+. +...++.+.+...      
T Consensus       320 ----~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~  393 (459)
T 4a6r_A          320 ----FTY-SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR-GVGMVQAFTLVKNKAKREL  393 (459)
T ss_dssp             ----HHH-CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE-EETTEEEEEECSBTTTTBC
T ss_pred             ----CCC-CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-EEEEEEEEEEecCcccccc
Confidence                000 0111222333344444333332 2222 233344444445556665554432 2334555555431      


Q ss_pred             ----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 ----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 ----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                          .....++.+.|.++|.+ +.+.   + .++|+++ ....+++|+++++++|+++++++..
T Consensus       394 ~~~~~~~~~~~~~~l~~~Gv~-v~~~---g-~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          394 FPDFGEIGTLCRDIFFRNNLI-MRAC---G-DHIVSAP-PLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             CSSTTHHHHHHHHHHHHTTEE-CEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHCCeE-EecC---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                12256788889999854 3332   2 6899964 4567899999999999999887653

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.51  E-value=6.1e-13  Score=128.69  Aligned_cols=225  Identities=9%  Similarity=-0.000  Sum_probs=130.0

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   ...+|++...++++|.+.|    +++|.++|++||+++++|++|.++ ...........++ .
T Consensus       188 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~  262 (434)
T 3l44_A          188 NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-T  262 (434)
T ss_dssp             CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-C
T ss_pred             cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCC-C
Confidence            89999999986421   1246666666667788877    999999999999999999999865 3221111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  .|.++++..+|+++.+ ++.... +..........                                     
T Consensus       263 ~di~t~--sK~~~~G~~iG~~~~~-~~i~~~-~~~~~~~~~~~-------------------------------------  301 (434)
T 3l44_A          263 PDLTAL--GKVIGGGLPIGAYGGK-KEIMEQ-VAPLGPAYQAG-------------------------------------  301 (434)
T ss_dssp             CSEEEE--EGGGGTTSSCEEEEEC-HHHHTT-BTTTSSBCCCC-------------------------------------
T ss_pred             CCeeeh--hhhhcCCcCeeeEEEc-HHHHHh-hccCCCcccCC-------------------------------------
Confidence            466655  4888888889998664 333321 11100000000                                     


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC----CCCeEEeCCCCceeEEEEEcCC----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK----DDRFELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~----~~g~~~~~~~~~~~v~f~~~~~----  293 (367)
                            ...+..+.+.+..++++.+..   +++.++..++.+++++.|++    ++.+... ++..+++.+.+...    
T Consensus       302 ------t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  371 (434)
T 3l44_A          302 ------TMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITL-NRLKGALTVYFTTNTIED  371 (434)
T ss_dssp             ------TTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEETTEEEEEESSSCCCS
T ss_pred             ------CCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEE-EeeccEEEEEEecCcccc
Confidence                  000111222333344444322   34455666666666666654    3222211 22334555655321    


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                              .....++.+.|.++|+ .+.+.   +...+|++   ...+++|+++++++|+++++++..
T Consensus       372 ~~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~---~~~~~rl~---~~~t~e~i~~~l~~l~~~l~~~~~  432 (434)
T 3l44_A          372 YDAAQDTDGEMFGKFFKLMLQEGV-NLAPS---KYEAWFLT---TEHTKEDIEYTIEAVGRAFAALAD  432 (434)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHTTE-ECCSS---TTCCEECC---TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCHHHHHHHHHHHHHCCe-EEeec---CCCcEEEe---cccCHHHHHHHHHHHHHHHHHHHh
Confidence                    1233678888988884 33322   23467873   356899999999999999887643

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.50  E-value=5.5e-13  Score=128.93  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=129.7

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   .+.+|++...+++.|.+.|    +++|.++|++||+++++|++|.++ ...........++ .
T Consensus       186 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~  260 (429)
T 3k28_A          186 DLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-T  260 (429)
T ss_dssp             CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-C
T ss_pred             CHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCC-C
Confidence            89999999985422   1346666666667788888    999999999999999999999765 3221111111222 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  .|.+.++..+|+++.++ +.... +..........         .|                          
T Consensus       261 ~di~t~--sK~~~~G~~iG~~~~~~-~~~~~-~~~~~~~~~~~---------t~--------------------------  301 (429)
T 3k28_A          261 PDLTCL--GKVIGGGLPVGAYGGKA-EIMRQ-VAPSGPIYQAG---------TL--------------------------  301 (429)
T ss_dssp             CSEEEE--CGGGGTTSCCEEEEECH-HHHTT-BTTTSSBCCCC---------TT--------------------------
T ss_pred             Cceehh--hhhhcCCCCeEEEEEcH-HHHhh-hccCCCccccC---------CC--------------------------
Confidence            466654  49988777888887743 32321 11100000000         00                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CCeEEeCCCCceeEEEEEcCC----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DRFELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~----  293 (367)
                              .+..+.+.+..++++...    ++..++..++.+++++.|+++    +.+..+ ++....+.+.+...    
T Consensus       302 --------~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  368 (429)
T 3k28_A          302 --------SGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVIN  368 (429)
T ss_dssp             --------TTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCS
T ss_pred             --------CCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCccc
Confidence                    011112233334444332    556667777777777777653    322111 12234445544221    


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                              .....++.+.|.++|++ +.+.   +...+|++   ...+++|+++++++|+++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~r~~---~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          369 YDAAKSSNLQFFAAYYREMVEQGVF-LPPS---QFEGLFLS---TVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHTTEE-CCSS---TTSCBCCC---TTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccccHHHHHHHHHHHHHCCeE-EecC---CCCCEEEE---CCCCHHHHHHHHHHHHHHHHHH
Confidence                    12346788889988843 3322   23467773   3568999999999999998764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.50  E-value=2e-12  Score=126.69  Aligned_cols=220  Identities=13%  Similarity=0.058  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC-
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-  140 (367)
                      |+++|++++++....+..+.+|++...++++|.+.|    +++|.++|++||+++|+|++|+++......+.....++. 
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~  320 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD  320 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCC
Confidence            689999999764221112457777777788998877    999999999999999999999753321110111112331 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|+++++  |++.   |.|++ + ++. +..   ..+....                                      
T Consensus       321 ~~Di~t~s--K~~l---~GG~~-~-~~~-~~~---~~~~~~~--------------------------------------  351 (472)
T 1ohv_A          321 PADVMTFS--KKMM---TGGFF-H-KEE-FRP---NAPYRIF--------------------------------------  351 (472)
T ss_dssp             CCSEEEEC--GGGS---SEEEE-E-CGG-GSC---SSSSSSC--------------------------------------
T ss_pred             CCCEEEEc--cccc---cCCcc-C-chh-hcc---ccccccc--------------------------------------
Confidence            25887665  8842   12443 3 222 210   0000000                                      


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CC-eEEeCCCCceeEEEEEcCCch
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DR-FELVCPPSMGLVCFRLKGDND  295 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g-~~~~~~~~~~~v~f~~~~~~~  295 (367)
                            .+..++.+.+.+..++|+.+..+   ++.++..++.+++.++|+++    |+ +.-+. +...++.|.+.. ..
T Consensus       352 ------~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~-~~g~~~~~~~~~-~~  420 (472)
T 1ohv_A          352 ------NTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-GRGTFCSFDTPD-ES  420 (472)
T ss_dssp             ------CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-EETTEEEEECSS-HH
T ss_pred             ------CccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec-CCceEEEEEeCC-hh
Confidence                  00011112223444555544332   34567778888888877654    43 32221 233455665543 33


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ...++.++|.++|.. +.+.   +..++|+++ +..++++||++++++|++++++
T Consensus       421 ~~~~~~~~l~~~Gv~-~~~~---g~~~iRi~~-~~~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          421 IRNKLISIARNKGVM-LGGC---GDKSIRFRP-TLVFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             HHHHHHHHHHHTTEE-CEEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCeE-EecC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence            456888899988854 3332   346899965 5678899999999999998765

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.47  E-value=3.5e-13  Score=130.10  Aligned_cols=223  Identities=11%  Similarity=-0.024  Sum_probs=127.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   .+.+|+++.+++++|.+.|    +++|.++|++||+++++|++|+++ ...........++ .
T Consensus       185 d~~~le~~l~~~~~---~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~  259 (427)
T 3fq8_A          185 DLEAVKALFAENPG---EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-T  259 (427)
T ss_dssp             CHHHHHHHHHHSTT---TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-C
T ss_pred             CHHHHHHHHHhCCC---CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-C
Confidence            89999999976321   2457777777778899988    999999999999999999999855 3222122212233 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++++  |.++++..+|+++.+ ++.... +.....+....         .|                          
T Consensus       260 ~di~t~s--K~~~~G~~~G~~~~~-~~~~~~-~~~~~~~~~~~---------t~--------------------------  300 (427)
T 3fq8_A          260 PDLTTLG--KIIGGGLPVGAYGGK-REIMQL-VAPAGPMYQAG---------TL--------------------------  300 (427)
T ss_dssp             CSEEEEC--GGGGTTSSCEEEEEC-HHHHTT-BTTTSSBCCCC---------TT--------------------------
T ss_pred             CChhhhh--hhhhCCcceEEEEEc-HHHHHh-hccCCCccccC---------CC--------------------------
Confidence            4776665  999865668888763 333321 11100000000         00                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGD-----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~-----  293 (367)
                              .+..+.+.+..++++.+..   +++.++..++.+++++.|+++.   ++....+....++.+.+...     
T Consensus       301 --------~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  369 (427)
T 3fq8_A          301 --------SGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNY  369 (427)
T ss_dssp             --------TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSH
T ss_pred             --------CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccc
Confidence                    0111122333344444333   3344556666666666665421   11111112234455554321     


Q ss_pred             -------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         294 -------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       294 -------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                             .....++.+.|.++|++ +.+.   +..  |+++ ....+++|+++++++|++++++
T Consensus       370 ~~~~~~~~~~~~~l~~~l~~~Gi~-v~~~---~~~--r~~~-~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          370 EDAKKSDLQKFSRFHRGMLEQGIY-LAPS---QFE--AGFT-SLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHTTEE-CCSS---TTS--CEEC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHCCcE-EecC---CCC--CEEe-eCcCCHHHHHHHHHHHHHHHHh
Confidence                   11245788889888843 3221   112  4433 4566899999999999998765

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.46  E-value=2.2e-12  Score=124.80  Aligned_cols=224  Identities=10%  Similarity=0.011  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   .+.+|+++..++++|.+.|    +++|.++|++||+++++|++|+++ .....+.....++ .
T Consensus       189 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~  263 (434)
T 2epj_A          189 DVEALERVFAEYGD---RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-E  263 (434)
T ss_dssp             CHHHHHHHHHHHGG---GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-C
T ss_pred             CHHHHHHHHHhCCC---CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-C
Confidence            89999999975321   1346666665567899888    999999999999999999999854 3222111111232 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  +|+++++..+|+++.++ +.... +.....+. ..        ..|                          
T Consensus       264 ~di~s~--sK~l~~G~~~G~v~~~~-~~~~~-l~~~~~~~-~~--------~t~--------------------------  304 (434)
T 2epj_A          264 GDIIVL--GKIIGGGFPVGAVAGSR-EVMSL-LTPQGKVF-NA--------GTF--------------------------  304 (434)
T ss_dssp             CSEEEE--EGGGGTTSSCEEEEECH-HHHTT-BTTTSSBC-CC--------CTT--------------------------
T ss_pred             CCeeee--cchhcCCcceeeeeecH-HHHHh-hccCCCcc-cC--------CCC--------------------------
Confidence            476644  59998766688888753 32221 11100000 00        000                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcCC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKGD-----  293 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~~-----  293 (367)
                              .++.+.+.+..++++.+..   +++.++..++.+++.+.|+++.   ++....++..+++.+.+...     
T Consensus       305 --------~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~  373 (434)
T 2epj_A          305 --------NAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNA  373 (434)
T ss_dssp             --------TTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSH
T ss_pred             --------CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccc
Confidence                    0111122333444544432   3455677788888888876641   33211123345667776531     


Q ss_pred             -------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         294 -------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       294 -------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                             .....++.+.|.++|+ .+.+.   +...+|+   ....+++|+++++++|+++++++
T Consensus       374 ~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~---~~~~~~~---~~~~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          374 AQARKADKKFYVKLHEEMLRRGV-FIAPS---NLEAVFT---GLPHQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHTTE-ECCSS---TTSCEEC---CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccCHHHHHHHHHHHHHCCe-EEecc---CCCcEEE---eccCCHHHHHHHHHHHHHHHHHH
Confidence                   1235678888988884 44332   1123554   25668999999999999998775

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.46  E-value=1.5e-11  Score=119.93  Aligned_cols=210  Identities=11%  Similarity=0.037  Sum_probs=117.1

Q ss_pred             EEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      .+|++...++..|.+.|    +++|.++|++||+++++|++|.++......+.....++ ..|+++++  |.+..+..+|
T Consensus       227 aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~s--K~~~~G~~~G  303 (453)
T 4ffc_A          227 AAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTMA--KGIAGGMPLS  303 (453)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGGGTTSSCE
T ss_pred             EEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhhh--hhhcCCcCeE
Confidence            34555444444466655    99999999999999999999976433221111111122 24776654  9998777788


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++.+. +.... +.       ....     ...|                                  .++.+.+.+..
T Consensus       304 ~~~~~~-~i~~~-~~-------~~~~-----~~t~----------------------------------~~~~~~~aaa~  335 (453)
T 4ffc_A          304 AVTGRA-ELMDA-VY-------AGGL-----GGTY----------------------------------GGNPVTCAAAV  335 (453)
T ss_dssp             EEEEEH-HHHTT-SC-------TTSS-----CCSS----------------------------------SSCHHHHHHHH
T ss_pred             EEEECH-HHHhh-hc-------ccCc-----CCCC----------------------------------CcCHHHHHHHH
Confidence            887743 32221 10       0000     0000                                  01111222333


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhc----CCCCeEEeCCCCceeEEEEEcC------CchHHHHHHHHHhccCcE
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVE----KDDRFELVCPPSMGLVCFRLKG------DNDLTNQLYERLMSHKQI  310 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~~------~~~~~~~l~~~L~~~g~~  310 (367)
                      ++++.+..+   ++.++..++.+++++.|.    +++.+..+. +...++.+.+..      ......++.+.|.++|.+
T Consensus       336 aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~  411 (453)
T 4ffc_A          336 AALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVR-GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVL  411 (453)
T ss_dssp             HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEE-EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCE
Confidence            444443332   334444555555555544    455544332 223455555532      123456888899999954


Q ss_pred             EEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         311 YIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       311 ~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                       +.+... ...++|+++ ....+++|+++++++|+++++++.
T Consensus       412 -v~~~~~-~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~  450 (453)
T 4ffc_A          412 -ILTCGT-FGNVIRLLP-PLVIGDDLLDEGITALSDIIRAKA  450 (453)
T ss_dssp             -CCEECT-TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -EecCCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence             333221 235899964 456689999999999999988764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.46  E-value=1e-12  Score=131.01  Aligned_cols=129  Identities=8%  Similarity=-0.013  Sum_probs=93.6

Q ss_pred             ceEEEecCCcchhHHHHHHhC--CcceEEEecCC--CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---h
Q psy3048          30 RLVAYASDQSNSSVEKSAIIG--DVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---L  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~--g~~v~~v~~~~--~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l  102 (367)
                      .-.|++++.+|.....++...  |++++.+++++  ++.+|+++|++++.+.+      .+|++++++|+||.+-+   +
T Consensus       194 Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------k~v~l~~p~NPtG~~~~~~~l  267 (546)
T 2zy4_A          194 GDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAI------KIFFCVNPSNPPSVKMDQRSL  267 (546)
T ss_dssp             TCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTE------EEEEEESSCSSSCBCCCHHHH
T ss_pred             CCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCC------eEEEEECCCCCCCccCCHHHH
Confidence            345667778999988887654  67888888753  46799999988764433      57778899999999865   6


Q ss_pred             hhHHHHH--hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecc
Q psy3048         103 EELGPIC--QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNA  167 (367)
Q Consensus       103 ~~I~~l~--~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~  167 (367)
                      ++|+++|  +++|+++++|++|+.+...........   ...++++.+.+|+++.| ..+|+++..+.
T Consensus       268 ~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~---~~~~i~~~S~SK~~g~~GlRiG~~~~~~~  332 (546)
T 2zy4_A          268 ERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC---PENTLLVYSFSKYFGATGWRLGVVAAHQQ  332 (546)
T ss_dssp             HHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC---GGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred             HHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC---CCCEEEEEeCccccCCCCcceEEEEECCH
Confidence            6788898  889999999999986543211111111   12368888999998643 56899888654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.45  E-value=1.5e-11  Score=119.80  Aligned_cols=226  Identities=14%  Similarity=0.094  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +++.+++++++... ...+.+|++...++..|.+.|    +++|.++|++||+++++|++|+++......+.....++ .
T Consensus       211 ~~~~~~~~l~~~~~-~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~  288 (451)
T 3oks_A          211 AAKRAITVIDKQIG-ADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-D  288 (451)
T ss_dssp             HHHHHHHHHHHHTC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-C
Confidence            35555566654221 112345555554555566665    99999999999999999999976433221111111222 3


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|++++  .|.+..+..+|+++.+. +.... +.       ....   .  ..|                          
T Consensus       289 pdi~t~--sK~l~~G~~iG~v~~~~-~~~~~-~~-------~~~~---~--~t~--------------------------  326 (451)
T 3oks_A          289 PDLIVT--AKGIAGGLPLSAVTGRA-EIMDS-PH-------VSGL---G--GTY--------------------------  326 (451)
T ss_dssp             CSEEEE--CGGGGTTSSCEEEEEEH-HHHTC-SC-------TTSB---C--CSS--------------------------
T ss_pred             CCeeee--hhhhhCCcceEEEEECH-HHHhh-hc-------CCCc---C--CCC--------------------------
Confidence            477655  49998877788887743 32221 10       0000   0  000                          


Q ss_pred             ccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc----CCCCeEEeCCCCceeEEEEEcC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVE----KDDRFELVCPPSMGLVCFRLKG-----  292 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~----~~~g~~~~~~~~~~~v~f~~~~-----  292 (367)
                              .++.+.+.+..++++.+..+   ++.++..++.+++++.|.    +++.+..+. +...++.+.+..     
T Consensus       327 --------~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~  394 (451)
T 3oks_A          327 --------GGNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVR-GRGAMIAMELVKAGTTE  394 (451)
T ss_dssp             --------SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-EETTEEEEEEBSTTSCC
T ss_pred             --------CCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-EeeEEEEEEEecCccCC
Confidence                    01111222333444443332   334455555555555554    445544332 223455555521     


Q ss_pred             -CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         293 -DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       293 -~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                       ......++.+.|.++|.+ +.+... ...++|+++ +...+++|+++++++|++++++
T Consensus       395 ~~~~~~~~~~~~l~~~Gv~-v~~~~~-~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          395 PDADLTKALCAGAHAAGVI-VLSCGT-YGNVVRFLP-PLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             BCHHHHHHHHHHHHHTTEE-CEEECT-TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCcE-EecCCC-CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHhh
Confidence             123456888899999954 333221 235899954 4566899999999999998763

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.45  E-value=5.8e-12  Score=122.60  Aligned_cols=226  Identities=8%  Similarity=-0.046  Sum_probs=132.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   .+.+|+++...+++|.+.|    +++|.++|++||+++++|++|+++ .....+.....++ .
T Consensus       187 d~~~le~~l~~~~~---~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~  261 (453)
T 2cy8_A          187 DIEGMREVFANHGS---DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV-Q  261 (453)
T ss_dssp             CHHHHHHHHHHHGG---GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-C
T ss_pred             CHHHHHHHHHhcCC---CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-C
Confidence            89999999975311   1345655555566898877    999999999999999999999854 3221111111222 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG  221 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (367)
                      .|+++  ..|+++++..+|+++.++ +.... +...  .  ....        +                          
T Consensus       262 ~di~s--~sK~l~~G~~~G~v~~~~-~~~~~-l~~~--~--~~~~--------~--------------------------  299 (453)
T 2cy8_A          262 PDLTC--LAKASAGGLPGGILGGRE-DVMGV-LSRG--S--DRKV--------L--------------------------  299 (453)
T ss_dssp             CSEEE--EEGGGGTTSSCEEEEECH-HHHTT-SSSC--C-----------------------------------------
T ss_pred             CcEEE--EChhhhCCcceEEEechH-HHHHH-hccc--c--CCCc--------e--------------------------
Confidence            47664  459998777789988754 32221 1100  0  0000        0                          


Q ss_pred             ccccccccccccccHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCceeEEEEEcC-----
Q psy3048         222 VIQHWQTPLSRRFRALKLWMTLRS-YGLKGLQAYLRKHISLAKKFADLVEKDD---RFELVCPPSMGLVCFRLKG-----  292 (367)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~la~~l~~~L~~~~---g~~~~~~~~~~~v~f~~~~-----  292 (367)
                         ....-.++.+.+.+..++++. + .   +++.++..++.+++.+.|+++.   ++....++...++.+.+..     
T Consensus       300 ---~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~  372 (453)
T 2cy8_A          300 ---HQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTT  372 (453)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCC
T ss_pred             ---eCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEecccccc
Confidence               000000111222333344444 3 2   3455677778888888776531   2221123344567777753     


Q ss_pred             C-------------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         293 D-------------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       293 ~-------------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      .             .....++.+.|.++|+ .+.+   .+  .+|+   +...+++|+++++++|+++++++...
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv-~v~~---~~--~~~l---~~~~t~~~i~~~l~~l~~~l~~~~~~  438 (453)
T 2cy8_A          373 DTGSITRAEVARPDVKMIAAMRMALILEGV-DIGG---RG--SVFL---SAQHEREHVEHLVTTFDRVLDRLADE  438 (453)
T ss_dssp             CCHHHHTTCSCCCCHHHHHHHHHHHHHTTE-ECBT---TT--EEEC---CTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccHHHHHHHHHHHHHCCe-EEeC---CC--CEEe---eccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            1             1235678888888884 3422   12  2554   35668999999999999998887543

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.43  E-value=5.8e-12  Score=121.66  Aligned_cols=222  Identities=11%  Similarity=0.080  Sum_probs=124.6

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   ...+|++...++..|.+.|    +++|.++|++||+++++|++|+++ ...........++ .
T Consensus       186 d~~~le~~l~~~~~---~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~  260 (429)
T 4e77_A          186 DLASVRQAFEQYPQ---EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-I  260 (429)
T ss_dssp             CHHHHHHHHHHSTT---TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-C
T ss_pred             CHHHHHHHHHhcCC---CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-C
Confidence            89999999975321   1345555555556677777    999999999999999999999855 3221111112233 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  .|.++++..+|+++.+ ++.... +... ..+...                                     
T Consensus       261 pdi~t~--sK~~~~G~~~G~~~~~-~~~~~~-l~~~~~~~~~~-------------------------------------  299 (429)
T 4e77_A          261 PDLTCL--GKIIGGGMPVGAFGGR-REVMNA-LAPTGPVYQAG-------------------------------------  299 (429)
T ss_dssp             CSEEEE--EGGGGTTSCCEEEEEC-HHHHTT-BTTTSSBCC---------------------------------------
T ss_pred             CCeeee--cccccCCCCeEEEEEC-HHHHHH-hccCCCccccC-------------------------------------
Confidence            476654  4999877778887764 332321 1100 000000                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCCc---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGDN---  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~~---  294 (367)
                             .-....+.+.+..++++.+..   +++.++..++.+++++.|+++   .++....+....++.+.+....   
T Consensus       300 -------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  369 (429)
T 4e77_A          300 -------TLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVT  369 (429)
T ss_dssp             -------CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCC
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccc
Confidence                   000111222333444544322   344555666666666666542   0221111223345556654321   


Q ss_pred             ----------hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         295 ----------DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       295 ----------~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                                ....++.+.|.++|++ +.+.   +...+|+   ....+++|+++++++|++++++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~---~~~~~~~---~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          370 CYQDVMNCDVERFKRFFHLMLEEGVY-LAPS---AFEAGFM---SLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             SHHHHHTSCHHHHHHHHHHHHHTTEE-CCSS---TTSCEEC---CTTCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccHHHHHHHHHHHHHCCeE-Eeec---CCCCEEE---eccCCHHHHHHHHHHHHHHHHh
Confidence                      2336888899989843 3322   2223554   3556899999999999998753

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.43  E-value=7.3e-13  Score=126.66  Aligned_cols=241  Identities=12%  Similarity=0.005  Sum_probs=145.7

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      .|++++.+|.++...++..|++++.++.+.++ ++        .+.      +.+|++++++|+||.+.+  +|++.++.
T Consensus       121 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~-l~--------~~~------~k~v~l~~p~NPtG~~~~--~l~~~~~~  183 (391)
T 3bwn_A          121 SVVAAAPFYSTYVEETTYVRSGMYKWEGDAWG-FD--------KKG------PYIELVTSPNNPDGTIRE--TVVNRPDD  183 (391)
T ss_dssp             EEEECSSCCTHHHHHHHTTCBTTEEEEEESTT-CC--------CCS------CEEEEEESSCTTTCCCCC--CCC-----
T ss_pred             eEEEcCCCchhHHHHHHHcCCeEEEecCCHHH-cC--------CCC------CEEEEECCCCCCCchhHH--HHHHHhhc
Confidence            78888999999999999999999999886432 11        011      357778999999999975  55442222


Q ss_pred             cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNT  190 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~  190 (367)
                      +++++++|++|+....  ..    +......++++.+.+|.++.| ..+|+++..+++.+...... ..+...       
T Consensus       184 ~~~~ii~De~y~~~~~--~~----l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~-~~~~~~-------  249 (391)
T 3bwn_A          184 DEAKVIHDFAYYWPHY--TP----ITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY-IIVNSI-------  249 (391)
T ss_dssp             CCCEEEEECTTCSTTT--SC----CCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHH-HHHHHS-------
T ss_pred             CCCEEEEeCCCCCCCC--Cc----cccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHH-hccccc-------
Confidence            3399999999973111  00    111123478899999988633 44688887444433221100 000000       


Q ss_pred             CCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh---------HHHHHHHHHHHHHH
Q psy3048         191 QSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG---------LKGLQAYLRKHISL  261 (367)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~g~~~~~~~~~~l  261 (367)
                                                             ....+....+..++....         .+.+++..++..+.
T Consensus       250 ---------------------------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (391)
T 3bwn_A          250 ---------------------------------------GVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNR  290 (391)
T ss_dssp             ---------------------------------------SCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHH
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHH
Confidence                                                   001011222333333211         34577788888899


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCc-------------eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEE
Q psy3048         262 AKKFADLVEKDDRFELVCPPSM-------------GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFV  326 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~-------------~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~  326 (367)
                      .+++.+.|++++++++..+...             ..+++.++. .   ..+.+.|.+.|+ .+.++...  +.+++|++
T Consensus       291 ~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-~---~~~~~~l~~~gV-~v~pg~~fg~~~~~iRis  365 (391)
T 3bwn_A          291 WEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-E---TDLVSELRRHKV-MSRAGERCGSDKKHVRVS  365 (391)
T ss_dssp             HHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-S---CCHHHHHHHTTE-ECEEGGGGTCCTTEEEEE
T ss_pred             HHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-H---HHHHHHHHHCCE-EEccCCCCCCCCCEEEEE
Confidence            9999999999888876543211             145566653 1   245555666774 44443222  25699997


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         327 VTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       327 ~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +.   ++++++++++++|++++++
T Consensus       366 ~~---~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          366 ML---SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             SC---SCHHHHHHHHHHHHSCC--
T ss_pred             ec---CCHHHHHHHHHHHHHHHHh
Confidence            64   3789999999999887553

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.42  E-value=1.1e-12  Score=125.96  Aligned_cols=256  Identities=16%  Similarity=0.154  Sum_probs=152.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEec-C-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecC-CCccccc---CChhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLG-TTGTCAF---DNLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~-~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~-~t~~G~i---~dl~~  104 (367)
                      -.|++.+.++......++..|++++.+++ + +++.+|+++|++++++..+    ..+++++.+ +||||.+   +.+++
T Consensus       123 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~----~~~i~l~~~~~NPTG~~~s~~~~~~  198 (405)
T 3k7y_A          123 ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPN----GSSVILQISCYNPCSVNIEEKYFDE  198 (405)
T ss_dssp             CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCS----SCEEEECCSSCTTTCCCCCHHHHHH
T ss_pred             CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCC----CeEEEEeCCCCCCCCCCCCHHHHHH
Confidence            46677888999999999999999999987 3 3589999999999975321    136666554 7999998   56778


Q ss_pred             HHHHHhhcCcEEEEecccccccccC-h----hhhhhhCCCCCcceeeeccccccc-cCCcceeEEE--ecchhhhhhccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLL-P----EYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWV--KNANHLTNTFFT  176 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~-~----~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~--~~~~~~~~~~~~  176 (367)
                      |+++|++||+++++|++|....+.. +    ...... ....--+++.+..|.++ .+..+|+++.  .+++........
T Consensus       199 l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~  277 (405)
T 3k7y_A          199 IIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFE-EKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNN  277 (405)
T ss_dssp             HHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHH-TTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHH-hcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHH
Confidence            8899999999999999997654321 1    111111 11111355677899997 5688999864  233322211000


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--h---hHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--Y---GLKGL  251 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~---~~~g~  251 (367)
                      - ..+....                                        +.  ....+.+..+..++..  +   ..+.+
T Consensus       278 l-~~~~~~~----------------------------------------~~--~~~~~~q~~~~~~l~~~~l~~~~~~~l  314 (405)
T 3k7y_A          278 L-CFIVRKF----------------------------------------YS--SPVIHTNRILCQLLNNQNLKLNWIKEL  314 (405)
T ss_dssp             H-HHHHHTT----------------------------------------TS--SCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             H-HHHHhcc----------------------------------------cC--CCcHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            0 0000000                                        00  0000111111222221  1   12234


Q ss_pred             HHHHHHHHHHHHHHHHHhc----CCC---CeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEE
Q psy3048         252 QAYLRKHISLAKKFADLVE----KDD---RFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLR  324 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~----~~~---g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lR  324 (367)
                      ++..++..+.++++.+.|+    +++   ++++. +|+.+...+ +.    .+.+.+++|.+.| +++.|+   +    |
T Consensus       315 ~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~-~~----l~~~~~~~L~~~g-V~v~p~---~----R  380 (405)
T 3k7y_A          315 SQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KKQRGLFSF-VP----LLAKIAEHLKTHH-IYIINN---G----R  380 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SSCCSSEEE-CG----GGGGGTTTTTTTT-EECCTT---S----E
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cCCceEEEe-cC----CCHHHHHHHHHCC-EeecCC---C----e
Confidence            5555667788888888888    662   14433 344555433 21    1224456774445 555442   1    9


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      |+++  ..++++|++++++|++++++
T Consensus       381 is~a--~~~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          381 INVS--GITKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             EEGG--GCCTTHHHHHHHHHHHHHHC
T ss_pred             EEEe--ccCHHHHHHHHHHHHHHHhh
Confidence            9764  33678999999999998764

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.40  E-value=1.3e-11  Score=117.25  Aligned_cols=237  Identities=14%  Similarity=0.096  Sum_probs=152.2

Q ss_pred             eEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhh
Q psy3048          54 VRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY  132 (367)
Q Consensus        54 v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~  132 (367)
                      +...+++ +++.+|.+++++...+..     |.+|+...  +..-...|++++.+||++.|+++++|.||-+|.+....+
T Consensus       178 ~~~Y~vd~~t~~IDyd~~~~~A~~~k-----PklIi~G~--SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~  250 (490)
T 3ou5_A          178 SMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVI  250 (490)
T ss_dssp             --CBCEETTTTEECHHHHHHHHHHHC-----CSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS
T ss_pred             ccccccCCCCCcccHHHHHHHHhhcC-----CCeEEECC--ccCccccCHHHHHHHHhhcccEEEechhhhhhhhccccc
Confidence            3334444 579999999999987765     66665543  334455689999999999999999999998877765544


Q ss_pred             hhhhCCCCCcceeeeccccccccCCcceeEEEecchh-------------hhhhccCCccccccCCCCCCCCCCCchhhh
Q psy3048         133 AHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH-------------LTNTFFTDRVYLKHTDAPMNTQSPDYTVMN  199 (367)
Q Consensus       133 ~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~-------------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~  199 (367)
                      +.   .+..||+++.+.||.|.+|. .|+++++++..             +.+.+   -.-++++               
T Consensus       251 ps---P~~~ADvVTtTTHKTLrGPr-GG~Il~~~~~~~~~~k~~~~~~~~~~kki---n~aVFPg---------------  308 (490)
T 3ou5_A          251 PS---PFKHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRI---NFAVFPS---------------  308 (490)
T ss_dssp             CC---GGGTCSEEEEESSSTTCSCS-CEEEEEECSEEEECC--CCEEECCCHHHH---HHHHTTT---------------
T ss_pred             CC---ccccceEEeccccccccCCC-ceEEEeccccccccccccchhHHHHHHHH---HhhcCcc---------------
Confidence            43   24467999999999999885 56777765310             00000   0001111               


Q ss_pred             hhcccCCCcchhccCCCCCCCCccccccccccccccHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEe
Q psy3048         200 WLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELV  278 (367)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~  278 (367)
                                                  +++++....+ +...++.......+.++.++..++++.|.+.|.+. |++++
T Consensus       309 ----------------------------~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vv  359 (490)
T 3ou5_A          309 ----------------------------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLV  359 (490)
T ss_dssp             ----------------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG
T ss_pred             ----------------------------ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeee
Confidence                                        1122222222 22334444344556778888899999999999886 99997


Q ss_pred             C-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE------CCeeEEEEEe---cCCCCCHHHHHHHHHHHHHHH
Q psy3048         279 C-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF------QGRPFLRFVV---TSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       279 ~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------~~~~~lRi~~---~~~~~~~edid~li~~l~~~~  348 (367)
                      . ....+.+.+.+.+.+...++..+.|.+.|+. +-....      ..+..||+..   +.....++|++.+.+.|.+++
T Consensus       360 sGgTdnHlvLvDl~~~g~tG~~ae~~Le~agIt-vNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l  438 (490)
T 3ou5_A          360 SGGTDNHLVLVDLRPKGLDGARAERVLELVSIT-ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGV  438 (490)
T ss_dssp             GGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEE-CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEeccccCCCHHHHHHHHHHcCcE-ECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5 3466777777754332344555666666743 322111      1134799954   334567899999999988766


Q ss_pred             H
Q psy3048         349 S  349 (367)
Q Consensus       349 ~  349 (367)
                      .
T Consensus       439 ~  439 (490)
T 3ou5_A          439 N  439 (490)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.34  E-value=3.5e-11  Score=115.97  Aligned_cols=219  Identities=13%  Similarity=0.058  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++...   .+.+|+++..++++|.+.|    +++|.++ ++||+++++|++|+++ .....+.....++ .
T Consensus       185 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~  258 (424)
T 2e7u_A          185 DPEGLREVLKRRGE---EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-K  258 (424)
T ss_dssp             CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-C
T ss_pred             CHHHHHHHHHhCCC---CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-C
Confidence            89999999975311   1245555544445898877    9999999 9999999999999865 3222111111232 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccC-CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT-DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++  +..|+++++..+|+++.++ +... .+.. ...+...          .|                         
T Consensus       259 ~di~--s~sK~l~~G~~~G~~~~~~-~~~~-~~~~~~~~~~~~----------t~-------------------------  299 (424)
T 2e7u_A          259 PDLV--TLGKILGGGLPAAAYAGRR-EIME-KVAPLGPVYQAG----------TL-------------------------  299 (424)
T ss_dssp             CSEE--EECGGGGTTSSCEEEEECH-HHHT-TBTTTSSBCCCC----------TT-------------------------
T ss_pred             cchh--hhhhhhhCCcceEEEEEcH-HHHh-hhcccCCcccCC----------CC-------------------------
Confidence            4765  5579999766788888754 3222 1111 0000000          00                         


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCceeEEEEEcCC----
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMGLVCFRLKGD----  293 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~~v~f~~~~~----  293 (367)
                               .++.+.+.+..++++.+..  .+++.++..++.++++++|+++   .++....++..+++.+.+...    
T Consensus       300 ---------~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~  368 (424)
T 2e7u_A          300 ---------SGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVT  368 (424)
T ss_dssp             ---------CSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCS
T ss_pred             ---------CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcc
Confidence                     0111122333344444322  2456677788888888888664   133111123344666666431    


Q ss_pred             --------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy3048         294 --------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       294 --------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~  347 (367)
                              .....++.+.|.++|+ .+.+.   +...+|+   ....+++|+++++++|+++
T Consensus       369 ~~~~~~~~~~~~~~~~~~l~~~Gv-~v~~~---~~~~~~~---~~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          369 FQDARRTDTELFKRFFHGLLDRGI-YWPPS---NFEAAFL---SVAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHTTTE-ECCSS---SSSCEEC---CTTCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCHHHHHHHHHHHHHCCe-EEecc---CCCceEe---eccCCHHHHHHHHHHHHHh
Confidence                    1235578888988884 44332   1123554   2556899999999999875

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.31  E-value=2.1e-11  Score=117.37  Aligned_cols=262  Identities=13%  Similarity=0.036  Sum_probs=153.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceE-EEec--CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVR-QLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~-~v~~--~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      .-.|++++..+.+....++..|.+.+ ..+.  ++++.+|.+.+.+.++..++.   .++++.+.++||||..   +.++
T Consensus       137 gd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~---~~vll~~~p~NPtG~~~~~~~~~  213 (420)
T 4h51_A          137 TTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDG---SVFILHQCAHNPTGVDPSQEQWN  213 (420)
T ss_dssp             TSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSS---CEEEEESSSCTTTCCCCCHHHHH
T ss_pred             CCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCC---cEEEEeCCCCCCCCCCCCHHHHH
Confidence            34567788899888888889998744 3333  246788999999988765432   3577788899999998   6788


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhh---h-hCCCCCcceeeecccccccc-CCcceeEEEecchh--hhhhccC
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAH---L-KRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANH--LTNTFFT  176 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~---~-~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~--~~~~~~~  176 (367)
                      +|+++|++++++++.|.+|..+.+.......   . ......--+++.+..|.++. ...+|++.+.....  ..+....
T Consensus       214 ~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~  293 (420)
T 4h51_A          214 EIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSV  293 (420)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHH
Confidence            9999999999999999999876543211110   0 00011113455678897654 47799988754321  1111000


Q ss_pred             CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHH-----HHHhhHHHH
Q psy3048         177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMT-----LRSYGLKGL  251 (367)
Q Consensus       177 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~g~  251 (367)
                      . ..+.....                                          ...+...+......     +.....+-+
T Consensus       294 l-~~~~r~~~------------------------------------------s~~p~~~a~~~~~~l~d~~l~~~~~~~~  330 (420)
T 4h51_A          294 M-DSLIREEY------------------------------------------TCPPAHGARLAHLILSNNELRKEWEAEL  330 (420)
T ss_dssp             H-HHHHHTTT------------------------------------------SSCCHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             H-HHhhhccc------------------------------------------CcchHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            0 00000000                                          00000001111111     111223445


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC--C-eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEec
Q psy3048         252 QAYLRKHISLAKKFADLVEKDD--R-FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVT  328 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~--g-~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~  328 (367)
                      +.+.++..++++.+.+.|++..  + |..+ +++.++++|  .+.   +.+..+.|.+.| +|+.++   |    ||++.
T Consensus       331 ~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i-~~q~GmF~~--~gl---s~e~v~~L~e~~-Vy~~~~---g----Ris~A  396 (420)
T 4h51_A          331 SAMAERIRTMRRTVYDELLRLQTPGSWEHV-INQIGMFSF--LGL---SKAQCEYCQNHN-IFITVS---G----RANMA  396 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSCCTHH-HHCCSSEEE--CCC---CHHHHHHHHHTT-EECCTT---C----EEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCee-cCCCceEEe--cCc---CHHHHHHHHhCC-EEEcCC---C----EEEec
Confidence            6667778888888999888752  1 2212 234465554  221   345567777776 454332   1    88764


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         329 SPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       329 ~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      .  .+++.|++++++|.++++++.+
T Consensus       397 g--l~~~ni~~~a~aI~~vvr~i~r  419 (420)
T 4h51_A          397 G--LTHETALMLAQTINDAVRNVNR  419 (420)
T ss_dssp             G--CCHHHHHHHHHHHHHHHC----
T ss_pred             c--CCHHHHHHHHHHHHHHHHHhhc
Confidence            3  4789999999999999887654

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.23  E-value=3e-11  Score=116.82  Aligned_cols=241  Identities=10%  Similarity=-0.002  Sum_probs=148.3

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.-.|+++...|..+...++..|++++.+      .+|+++|++++++.+      .+|++++++|++|.+.+ +    +
T Consensus       154 ~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~------~~d~~~l~~~~~~~~------k~v~l~~p~NPtG~~~~-~----~  216 (427)
T 2hox_A          154 PESKVVAHAPFYPVFREQTKYFDKKGYVW------AGNAANYVNVSNPEQ------YIEMVTSPNNPEGLLRH-A----V  216 (427)
T ss_dssp             CCEEEEECSSCCHHHHHHHHHSCBTTEEE------EEEGGGGTTCSCGGG------EEEEEESSCTTTCCCCC-C----S
T ss_pred             CCCEEEEeCCCcccHHHHHHHcCCeeeee------cCCHHHHHHhhcCCc------eEEEEcCCCCCcccccH-H----H
Confidence            34567888999999999999999988743      357788888776544      47788899999999988 4    3


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++  ++..+.|.++-....   ..    ..+ ...++++.+.+|.++.| ..+|+++.++++.+....... .+...   
T Consensus       217 l~--~~~~i~d~~~~~~~~---s~----~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~-~~~~~---  283 (427)
T 2hox_A          217 IK--GCKSIYDMVYYWPHY---TP----IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-TKNTE---  283 (427)
T ss_dssp             ST--TCEEEEECTTCSTTT---SC----CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-HHHTS---
T ss_pred             Hc--CCCEEEeecccCCCC---Cc----cccCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHH-HhcCC---
Confidence            33  567888877632100   00    011 23489999999988643 448999886554443221100 00000   


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh----------hHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY----------GLKGLQAYLR  256 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~g~~~~~~  256 (367)
                                                                 ....+....+..+|...          ..+-+++..+
T Consensus       284 -------------------------------------------~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~  320 (427)
T 2hox_A          284 -------------------------------------------GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFK  320 (427)
T ss_dssp             -------------------------------------------SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHH
T ss_pred             -------------------------------------------CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHH
Confidence                                                       00001111222223221          0123455667


Q ss_pred             HHHHHHHHHHHHhcCCCCeEE--eC-C----------C-CceeEEEEEcCCchHHHHHHHHHh-ccCcEEEEEeE-EC-C
Q psy3048         257 KHISLAKKFADLVEKDDRFEL--VC-P----------P-SMGLVCFRLKGDNDLTNQLYERLM-SHKQIYIIKAS-FQ-G  319 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~--~~-~----------~-~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~-~~-~  319 (367)
                      +..+..+++.+.|++++|+.+  +. +          | ....++++++.   ...++.+.|. +.|+ .+.++. +. +
T Consensus       321 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI-~v~pg~~f~~~  396 (427)
T 2hox_A          321 KLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRI-NTQNGVGFEAS  396 (427)
T ss_dssp             HHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTE-ECEEGGGGTSC
T ss_pred             HHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCE-EEcCCCccCCC
Confidence            788889999999999888876  22 1          1 23445566653   1345666665 5664 444432 22 3


Q ss_pred             eeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         320 RPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       320 ~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      ..++|+++.   +++++++.+++.|+++++
T Consensus       397 ~~~~Ris~~---~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          397 SRYVRLSLI---KTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             TTEEEEECS---SCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEec---CCHHHHHHHHHHHHHHHh
Confidence            579999775   278999999999988864

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.07  E-value=2.1e-09  Score=104.21  Aligned_cols=221  Identities=11%  Similarity=0.043  Sum_probs=123.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |.+.+++.+++...+   ..+|++.-.....|.+.|    +++|.++|++||+++++|+.+.+  .....+.....++ .
T Consensus       206 d~~~l~~~l~~~~~~---iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~~a~e~~gv-~  279 (454)
T 4ao9_A          206 DAQTARAQIERHGPE---IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPHGLANKLGI-R  279 (454)
T ss_dssp             CHHHHHHHHHHTGGG---EEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTTCHHHHHTC-C
T ss_pred             hHHHHHHHHhhcCCc---eEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccccchhccCC-C
Confidence            889999999865432   345666555566788877    99999999999999999999974  2111111111244 4


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++....|.+..+.+ ... .+... ..+...                                     
T Consensus       280 PDi~t~--gK~lggG~Piga~~~~~e-i~~-~~~~~~~~~~h~-------------------------------------  318 (454)
T 4ao9_A          280 SDLTTL--GKYIGGGMSFGAFGGRAD-VMA-LFDPRTGPLAHS-------------------------------------  318 (454)
T ss_dssp             CSEEEE--EGGGGTTSSCEEEEECHH-HHG-GGCTTTCSCCCC-------------------------------------
T ss_pred             CcEEEe--ccccCCCCcceeeeeHHH-HHH-HHhhccCCcccc-------------------------------------
Confidence            588765  477777667788777543 221 11110 011000                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC---Ce--EEeCCCCceeEEEEEcC---
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD---RF--ELVCPPSMGLVCFRLKG---  292 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~---g~--~~~~~~~~~~v~f~~~~---  292 (367)
                           .+. .++...+.+..+.|+.+..+   +..++..++.++|+++|+++-   ++  ++-.-  -.++.+.+..   
T Consensus       319 -----~T~-~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~--G~m~gi~f~~~~~  387 (454)
T 4ao9_A          319 -----GTF-NNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTGI--GSLMNAHFVQGDV  387 (454)
T ss_dssp             -----CTT-TTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE--TTEEEEESCCSCC
T ss_pred             -----CCC-CCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeee--ceEEEEEEecCCC
Confidence                 011 11112233444556655443   344566677777777775531   11  11110  1122222211   


Q ss_pred             ---------CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         293 ---------DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       293 ---------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                               +......+...|+++|+ ++.|     ...+.+  +.+ .|++|||+++++|++++.+...
T Consensus       388 ~~~~~~~~~d~~~~~~~~~~ll~~Gv-~~~p-----~~~~~~--s~~-~T~~dId~~l~al~~~l~~~~a  448 (454)
T 4ao9_A          388 RSSEDLAAVDGRLRQLLFFHLLNEDI-YSSP-----RGFVVL--SLP-LTDADIDRYVAAIGSFIGGHGA  448 (454)
T ss_dssp             CSGGGGTTCCHHHHHHHHHHHHHTTE-ECCT-----TCEEEC--CTT-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHCCE-EEcC-----CCCEEE--eCC-CCHHHHHHHHHHHHHHHHhccc
Confidence                     01233466677888884 4432     123333  333 4799999999999999988654

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=98.64  E-value=1.5e-11  Score=119.89  Aligned_cols=221  Identities=9%  Similarity=-0.023  Sum_probs=124.4

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      |+++|++++++..   ..+.+|++....+++|.+.|    +++|.++|++||+++++|++|+ + ...........++ .
T Consensus       219 d~~~l~~~l~~~~---~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv-~  292 (465)
T 2yky_A          219 DVEGTADLLKRHG---HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGI-S  292 (465)
Confidence            7899999997421   11235555554566898766    9999999999999999999998 4 2111111111122 2


Q ss_pred             cceeeeccccccccCCcceeEEEecchhhhhhccC---CccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCC
Q psy3048         142 VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT---DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP  218 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (367)
                      .|+++  ..|+++++..+|+++.+.. .... +..   .+.+...                                   
T Consensus       293 pDi~t--~sK~lg~G~piG~v~~~~~-i~~~-l~~~~~g~~~~~~-----------------------------------  333 (465)
T 2yky_A          293 ADLTT--LGKYIGGGMSFGAFGGRRD-LMER-FDPARDGAFAHAG-----------------------------------  333 (465)
Confidence            46654  5699987666787776432 2221 110   0000000                                   


Q ss_pred             CCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CeEEeC--CCCceeEEEEEcC---
Q psy3048         219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDD-RFELVC--PPSMGLVCFRLKG---  292 (367)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~-g~~~~~--~~~~~~v~f~~~~---  292 (367)
                              +. .++...+.+..++|+.+..+   ++.++..++.++++++|+++. +..+..  +....++.+.+..   
T Consensus       334 --------T~-~~npla~aAa~aaL~~l~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~  401 (465)
T 2yky_A          334 --------TF-NNNILTMSAGHAALTQIYTR---QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPI  401 (465)
Confidence                    00 01111123333445544332   456677888888888887752 222211  2233445554432   


Q ss_pred             ---------CchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         293 ---------DNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       293 ---------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                               +.....++.+.|.++|.+ +.+..+.   .  ++   ...+++|||+++++|+++++++.
T Consensus       402 ~~~~~~~~~d~~~~~~~~~~ll~~GV~-v~p~~~~---~--~s---~~~t~edid~~l~~l~~~l~~~~  461 (465)
T 2yky_A          402 RSAGDVRAADQQLKELFFFHMLRKGIY-LAPRGMY---A--LS---LEIADAGRDAFAEALADFIGEQR  461 (465)
Confidence                     011245688888888854 4433221   1  32   34579999999999999887653

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.99  E-value=2.7e-08  Score=97.05  Aligned_cols=230  Identities=10%  Similarity=0.046  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcc
Q psy3048          68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD  143 (367)
Q Consensus        68 ~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D  143 (367)
                      +++++.+.+...  ....+|++--....-|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..|
T Consensus       223 ~~l~~~i~~~~~--~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PD  299 (473)
T 4e3q_A          223 RELEETIQREGA--DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPD  299 (473)
T ss_dssp             HHHHHHHHHHCG--GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCS
T ss_pred             HHHHHHHHhhCC--CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCC
Confidence            445555544321  12345555555555566633    89999999999999999999987643332222222344 458


Q ss_pred             eeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCc
Q psy3048         144 SFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGV  222 (367)
Q Consensus       144 ~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (367)
                      +++++  |.+.+. .-+|.++.+++- .. .+............                                    
T Consensus       300 i~t~~--K~l~gG~~Pl~av~~~~~i-~~-~~~~~~~~~~~~~h------------------------------------  339 (473)
T 4e3q_A          300 AIISS--KNLTAGFFPMGAVILGPEL-SK-RLETAIEAIEEFPH------------------------------------  339 (473)
T ss_dssp             EEEEC--GGGGTTSSCCEEEEECHHH-HH-HHHHHHHHHSCCCC------------------------------------
T ss_pred             hHHhc--ccccCCCCCcccccccHHH-HH-Hhcccccccccccc------------------------------------
Confidence            87764  777665 567888876532 11 11000000000000                                    


Q ss_pred             cccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC---CCeEEeCCCCce-eEEEEEcCC-----
Q psy3048         223 IQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD---DRFELVCPPSMG-LVCFRLKGD-----  293 (367)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~---~g~~~~~~~~~~-~v~f~~~~~-----  293 (367)
                        ..+. .+....+....+.|+.+..++   +.++..++.++|.++|+++   +.+.=+  ...+ ++.+.+..+     
T Consensus       340 --g~T~-~Gnpla~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~v--RG~Gl~~gielv~~~~~~~  411 (473)
T 4e3q_A          340 --GFTA-SGHPVGCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEY--RGIGFMWALEAVKDKASKT  411 (473)
T ss_dssp             --CCTT-TTCHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEE--EEETTEEEEEECSBTTTTB
T ss_pred             --CCCC-CCCcchhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEE--eecceEEEEEEecCccccc
Confidence              0000 111122234445555555544   3445667777777777553   333111  1111 233433211     


Q ss_pred             -----chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         294 -----NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       294 -----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                           ......+.+.+.++|.+ +.+.   + ..+|+++ ....+++|+|.+++.|++.++++..+
T Consensus       412 ~~~~~~~~~~~~~~~~~~~Gll-~~~~---g-~~i~l~P-PL~it~~eid~~~~~l~~al~~v~ae  471 (473)
T 4e3q_A          412 PFDGNLSVSERIANTCTDLGLI-CRPL---G-QSVVLCP-PFILTEAQMDEMFDKLEKALDKVFAE  471 (473)
T ss_dssp             CCCGGGCHHHHHHHHHHHTTEE-CEEE---T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHCCcE-EEec---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 12346788889999954 3322   3 4789854 45678999999999999999887543

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.99  E-value=2.3e-07  Score=90.08  Aligned_cols=210  Identities=10%  Similarity=-0.004  Sum_probs=119.4

Q ss_pred             cEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc
Q psy3048          84 PCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC  159 (367)
Q Consensus        84 ~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~  159 (367)
                      ...|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.....++ ..|+++++  |.+++..-.
T Consensus       227 iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~  303 (456)
T 4atq_A          227 VAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPL  303 (456)
T ss_dssp             EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSC
T ss_pred             eEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCc
Confidence            445666555555676644    89999999999999999999987543322222222344 46988875  777776677


Q ss_pred             eeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHH
Q psy3048         160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKL  239 (367)
Q Consensus       160 g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (367)
                      |.++.+++- .. .+  .+.....                                           + -.+....+.+.
T Consensus       304 ~av~~~~~i-~~-~~--~~~~~~~-------------------------------------------T-f~gnpla~aaa  335 (456)
T 4atq_A          304 SAITGRADL-LD-AV--HPGGLGG-------------------------------------------T-YGGNPVACAAA  335 (456)
T ss_dssp             EEEEEEHHH-HT-TS--CTTSSCC-------------------------------------------S-SSSCHHHHHHH
T ss_pred             eeeEecHHH-Hh-cc--cccCCCC-------------------------------------------C-CCCChHHHHhh
Confidence            888876432 11 11  0100000                                           0 01122233444


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CC--eEEeCC-CCc-eeEEEEEcCC------chHHHHHHHHHh
Q psy3048         240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DR--FELVCP-PSM-GLVCFRLKGD------NDLTNQLYERLM  305 (367)
Q Consensus       240 ~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g--~~~~~~-~~~-~~v~f~~~~~------~~~~~~l~~~L~  305 (367)
                      .+.|+.+..+++   .++..++.+++.++|+++    +.  -.++.+ ... .++.+.+..+      ......+.+.+.
T Consensus       336 la~L~~i~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~  412 (456)
T 4atq_A          336 LAAIDTMEQHDL---NGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACL  412 (456)
T ss_dssp             HHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHH
Confidence            555665555543   445566666666666542    11  111111 111 2334444221      234567888899


Q ss_pred             ccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         306 SHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       306 ~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++|.+. .+.. .....+|+.+ ....|++|+|++++.|++.++.
T Consensus       413 ~~Gvl~-~~~g-~~~~~irl~P-pL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          413 KEGVII-LTCG-TYGNVIRLLP-PLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             HTTEEC-EEEC-TTSCEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCEE-EecC-CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence            999543 2221 1235899954 4567899999999999999875

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.85  E-value=6.2e-08  Score=100.71  Aligned_cols=229  Identities=13%  Similarity=0.062  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHh--hCCCccEEEEEecC-CCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          68 DALLTAVKEDL--AKGLIPCCLVATLG-TTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        68 ~~L~~~l~~~~--~~~~~~~~vv~~~~-~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      ++|++.+++..  .......+|++.-. ....|.+.+    +++|.++|++||+++++|+++.++......+.....++ 
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-  655 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-  655 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-
Confidence            56676665321  11122334444432 355566644    89999999999999999998876533222111111234 


Q ss_pred             CcceeeeccccccccC-CcceeEEEecchhhhhhccCCc---cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCC
Q psy3048         141 YVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDR---VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSK  216 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~---~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (367)
                      ..|+++  .-|.+.+. ..+|+++.+++ .. ..+....   .++..                                 
T Consensus       656 ~PDiit--lsK~L~gG~~Plgav~~~~~-i~-~~~~~~~~~~~~~hg---------------------------------  698 (831)
T 4a0g_A          656 KPDIAC--FAKLLTGGMVPLAVTLATDA-VF-DSFSGDSKLKALLHG---------------------------------  698 (831)
T ss_dssp             CCSEEE--ECGGGGTTSSCCEEEEECHH-HH-HTTCSSCGGGSCCCC---------------------------------
T ss_pred             CCcEEE--EecccccCccCcEEEEECHH-HH-HHHhcccccccceee---------------------------------
Confidence            358765  56888764 35688887543 22 2111100   00000                                 


Q ss_pred             CCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHH-HHHH----HHHHHHHhcCCCCeEEeCCCCceeEEEEEc
Q psy3048         217 GPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRK-HISL----AKKFADLVEKDDRFELVCPPSMGLVCFRLK  291 (367)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-~~~l----a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~  291 (367)
                               ++. .+....+.+..++|+.+..+.+.+.+++ ...+    .+.+.+.+++++.+.-+.. .-.++.+.+.
T Consensus       699 ---------~T~-~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~  767 (831)
T 4a0g_A          699 ---------HSY-SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-IGTLFALELK  767 (831)
T ss_dssp             ---------CTT-TTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC
T ss_pred             ---------cCC-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-cccEEEEEEe
Confidence                     011 1111222334445554433332211100 0111    1223444555555433211 1123334443


Q ss_pred             CC-------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         292 GD-------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       292 ~~-------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..       .....++.+++.++|. ++.+.   + ..+|+++ ...++++||++++++|+++++++
T Consensus       768 ~~~~~~~~~~~~a~~~~~~l~e~Gv-~v~p~---g-~~lrl~p-p~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          768 ADASNSGYASLYAKSLLIMLREDGI-FTRPL---G-NVIYLMC-GPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             ---------CHHHHHHHHHHHHTTE-ECCCB---T-TEEEEEC-CTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             cCccccccchHHHHHHHHHHHHCCc-EEEec---C-CEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence            21       2345678888999984 33322   2 5899964 56678999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	1e-81
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	5e-26
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	5e-19
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	6e-19
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	0.001
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	0.001

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  255 bits (651), Expect = 1e-81
 Identities = 156/351 (44%), Positives = 214/351 (60%), Gaps = 29/351 (8%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           +V++LAA+ K +  L +A P +++  +  +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212

Query: 61  DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
               +R  AL  A++ D A GLIP  +VATLGTT  C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272

Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
           AYAGSA + PE+ HL  G+E+ DSF FN HKWLL N DCSAMWVK    LT  F  D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332

Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
           LKH+            ++                          HWQ PL RRFR+LK+W
Sbjct: 333 LKHSHQ-------GSGLITDYR----------------------HWQLPLGRRFRSLKMW 363

Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
              R YG+KGLQAY+RKH+ L+ +F   V +D RFE+    ++GLVCFRLKG + L   L
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEAL 423

Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
            ER+ S ++I+++    +G+  LRF + S +     V  AW  I   ++E+
Sbjct: 424 LERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (264), Expect = 5e-26
 Identities = 54/350 (15%), Positives = 97/350 (27%), Gaps = 68/350 (19%)

Query: 1   MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
           M+  +A K +    + +AG                         K A   DV +R++   
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPT-------DKPNLVCGPVQICWHKFARYWDVELREIPMR 181

Query: 61  D-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE------ELGPICQEYN 113
                +    ++ A  E+         +V T G T T  ++  +      +        +
Sbjct: 182 PGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 235

Query: 114 IWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN 172
           I +H+DAA  G     +         L  V S + + HK+ L    C  +  ++   L  
Sbjct: 236 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 295

Query: 173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR 232
               +  YL                                     GG +          
Sbjct: 296 ELVFNVDYL-------------------------------------GGQIGTFAINFSRP 318

Query: 233 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCF 288
             + +  +      G +G          +A   AD + K   +E +C       +  VCF
Sbjct: 319 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF 378

Query: 289 RLKGDNDL---TNQLYERLMSHKQI---YIIKASFQGRPFLRFVVTSPET 332
           +LK   D       L ERL         + +         +R +      
Sbjct: 379 KLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 428

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 85.7 bits (211), Expect = 5e-19
 Identities = 47/329 (14%), Positives = 102/329 (31%), Gaps = 67/329 (20%)

Query: 30  RLVAYASDQSNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTAVKEDLAKGLIPCC 86
             V      S+ S  K+     + +R +      D   +  + +  A+K+++  G  PC 
Sbjct: 156 SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC- 214

Query: 87  LVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA 146
           +++TL        D++ E+  IC+ Y+I   ++ AYA       E    K     VD+  
Sbjct: 215 VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRVDAVV 273

Query: 147 FNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALG 206
            ++ K LLT      ++  +A  +                                    
Sbjct: 274 SSSDKNLLTPIGGGLVYSTDAEFIKE---------------------------------- 299

Query: 207 LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA 266
                           I       +     +   ++L S G K     ++   +  K   
Sbjct: 300 ----------------ISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD 343

Query: 267 DLVEK---DDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPF 322
           +L+         + +   S    C  +  D  ++  +LY   ++  +       F G  +
Sbjct: 344 ELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHF-GNCY 402

Query: 323 LRF-------VVTSPETNQCDVAFAWNEI 344
           L         +  +      D+  + +++
Sbjct: 403 LGTYTHDYIVMNAAIGVRTEDIVNSVSKL 431

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.4 bits (210), Expect = 6e-19
 Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 5/165 (3%)

Query: 34  YASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT 90
                   S  KS +      V +  +   D       A+   ++E         CL +T
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQEL--GPEHILCLHST 201

Query: 91  LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH 150
                    D LEEL  IC  Y+I   V+ AY   +            +  +D+F  +  
Sbjct: 202 TACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLD 261

Query: 151 KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDY 195
           K  +     + +   N   + +           + +     +   
Sbjct: 262 KNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS 306

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 21/128 (16%)

Query: 68  DALLTAVKEDLAKGLIPCCLVATLGTTG--TCAFDNLEELGPICQEYNIWLHVDAA---- 121
           + L   ++E     +       T  + G    +  NL+ +  I ++Y+I + +D+A    
Sbjct: 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE 229

Query: 122 -YAGSALLLPEYAH------LKRGLEYVDSFAFNAHK--------WLLTNHDCSAMWVKN 166
                     EY         +   +Y D  A +A K         L    D        
Sbjct: 230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTE 289

Query: 167 ANHLTNTF 174
              L    
Sbjct: 290 CRTLCVVQ 297

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 20/156 (12%), Positives = 38/156 (24%), Gaps = 23/156 (14%)

Query: 68  DALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAA-YA 123
           + L T +KE      I    +A              N+  +  +   Y I +  DA    
Sbjct: 161 NKLATLIKEK-GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219

Query: 124 GSALLLPEYAHLKRGL----------EYVDSFAFNAHK--------WLLTNHDCSAMWVK 165
            +A  + E       +           Y D    +  K        +L  N +      K
Sbjct: 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAK 279

Query: 166 NANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWL 201
               +     +           M     +     ++
Sbjct: 280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	100.0
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.96
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.96
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.96
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.95
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.94
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.92
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.92
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.91
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.91
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.89
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.87
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.85
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.84
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.84
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.83
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.83
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.82
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.81
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.76
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.75
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.75
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.74
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.72
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.7
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.69
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.69
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.69
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.68
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.67
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.66
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.66
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.65
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.64
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.64
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.63
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.62
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.6
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.6
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.58
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.58
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.58
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.57
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.57
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.55
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.55
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.54
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.53
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.53
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.51
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.51
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.51
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.51
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.5
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.49
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.49
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.47
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.47
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.46
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.45
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.45
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.43
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.42
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.41
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.41
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.38
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.37
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.36
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.36
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.35
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.32
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.32
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.31
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.26
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.21
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.21
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.19
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.18
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.12
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.09
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.98
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.91
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.91
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.85
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.7

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.6e-52  Score=405.35  Aligned_cols=323  Identities=49%  Similarity=0.880  Sum_probs=286.2

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhC
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK   80 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~   80 (367)
                      ++||++||++++++.+..++.+.+.+..++++||+|+.+|||+.+++.+.|..++.|+++++++||+++|+++|++++++
T Consensus       153 l~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~  232 (476)
T d1js3a_         153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA  232 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhc
Confidence            47999999999998877766666655567999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          81 GLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        81 ~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      |..|.+|+.+.|+|.+|.+||+++|+++|++||+|+|||||+|++..+.++++..+.+++.+|++++++|||++.|+++|
T Consensus       233 g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g  312 (476)
T d1js3a_         233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCS  312 (476)
T ss_dssp             TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCE
T ss_pred             CCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcce
Confidence            99999999999999999999999999999999999999999999999999989899999999999999999999999999


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++++++..+...+...+.|+...... .....++                            .++++++++++.++++|
T Consensus       313 ~~l~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------------~~~~~~~sr~~~al~lw  363 (476)
T d1js3a_         313 AMWVKRRTDLTGAFKLDPVYLKHSHQG-SGLITDY----------------------------RHWQLPLGRRFRSLKMW  363 (476)
T ss_dssp             EEEESCHHHHHGGGC-------------CCSCCCG----------------------------GGSSSCSCCCCTHHHHH
T ss_pred             eecccchHHHHHHHhcChhhhcccccc-ccccccc----------------------------cccccccchhhHHHHHH
Confidence            999999877766666666676554321 0112233                            66888999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCe
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGR  320 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~  320 (367)
                      .+++.+|.+|+++++++..++++|+.++|++.|+|+++.+|.+++|+|++.+.+..++++.++|.++|.+++.++.+.++
T Consensus       364 ~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~  443 (476)
T d1js3a_         364 FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQ  443 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTE
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCE
Confidence            99999999999999999999999999999999999999999999999999876777889999999999989999999999


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .++|++++++.++++||+.+++.|+++.+++.
T Consensus       444 ~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         444 FVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999888899999999999999999998864

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-40  Score=316.91  Aligned_cols=302  Identities=18%  Similarity=0.178  Sum_probs=240.8

Q ss_pred             CchHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhh
Q psy3048           1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLA   79 (367)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~   79 (367)
                      |+|+++||+++..+....+.       .....++++..+|+|+.+++++.|++++.|++++ ++++|+++|++++++++ 
T Consensus       129 ~~a~~aar~~~~~~~~~~g~-------~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t-  200 (450)
T d1pmma_         129 MLGGMAMKWRWRKRMEAAGK-------PTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENT-  200 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-------CCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTE-
T ss_pred             HHHHHHHHHHHHHHhhhcCC-------CCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhCc-
Confidence            57999999999988765543       2344566778899999999999999999999875 69999999999998876 


Q ss_pred             CCCccEEEEEecCCCcccccCChhhHHHHH------hhcCcEEEEecccccccccC-hhhhhhhCCCCCcceeeeccccc
Q psy3048          80 KGLIPCCLVATLGTTGTCAFDNLEELGPIC------QEYNIWLHVDAAYAGSALLL-PEYAHLKRGLEYVDSFAFNAHKW  152 (367)
Q Consensus        80 ~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~------~~~gi~l~vD~a~~~~~~~~-~~~~~~~~~~~~~D~~~~~~hK~  152 (367)
                           ++|+.++++|.+|.++|+++|.++|      +++|+|+|||||+|++..+. ........+++.+|++++++|||
T Consensus       201 -----~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~  275 (450)
T d1pmma_         201 -----IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF  275 (450)
T ss_dssp             -----EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTT
T ss_pred             -----eEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhc
Confidence                 6899999999999999999998885      56899999999998876532 22222334677899999999999


Q ss_pred             cccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccc
Q psy3048         153 LLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR  232 (367)
Q Consensus       153 l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (367)
                      +++|+|+|+++++++..+...+...+.|+....                                      ..++..+++
T Consensus       276 ~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~--------------------------------------~~~~~~~sr  317 (450)
T d1pmma_         276 GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI--------------------------------------GTFAINFSR  317 (450)
T ss_dssp             TCCCSSCEEEEESSGGGSCGGGCEEEEETTEEE--------------------------------------EECCSCCSC
T ss_pred             cCCCCCeeEEEecChhhhhhhcccccCcCCCCc--------------------------------------CCCcccCcc
Confidence            999999999999988766555544556653321                                      223445555


Q ss_pred             cc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC----CCceeEEEEEcCCc---hHHHHHHHHH
Q psy3048         233 RF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCFRLKGDN---DLTNQLYERL  304 (367)
Q Consensus       233 ~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~----~~~~~v~f~~~~~~---~~~~~l~~~L  304 (367)
                      +. ..+++|..++.+|.+|++++.++..++++|+.++|+++++++++.+    +..++|+|++.+..   ....++.++|
T Consensus       318 ~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L  397 (450)
T d1pmma_         318 PAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERL  397 (450)
T ss_dssp             BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHH
Confidence            53 4567899999999999999999999999999999999999998753    35788999996531   2345789999


Q ss_pred             hccCcEEEEEe---EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy3048         305 MSHKQIYIIKA---SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLP  354 (367)
Q Consensus       305 ~~~g~~~~~~~---~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~  354 (367)
                      .++|++.....   ...+..++|+++ ..++|++++|+|++.|+++++++.++
T Consensus       398 ~~~Gw~v~~~~~p~~~~~~~~lRvvv-~~~~t~e~~d~lv~dl~~~v~~l~~~  449 (450)
T d1pmma_         398 RLRGWQVPAFTLGGEATDIVVMRIMC-RRGFEMDFAELLLEDYKASLKYLSDH  449 (450)
T ss_dssp             HTTTCBCCEEECCTTCTTCEEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCeeeccCcCCCcCCcEEEEEEc-cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            99997543322   223466899955 67889999999999999999988654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-28  Score=237.82  Aligned_cols=274  Identities=16%  Similarity=0.131  Sum_probs=198.9

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      ++.+|++|+.+|+|+.+++++.|++++.|++   ++++.+|+++|++++++....+  +.+|+++++++++|.++|+++|
T Consensus       139 ~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i  216 (445)
T d3bc8a1         139 KAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEEL  216 (445)
T ss_dssp             TCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHH
T ss_pred             CCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHH
Confidence            3567889999999999999999999888864   4679999999999998764322  4688899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +++||+||+|+|+|+||+++..+.........+++.+|++++++||++++|.|+|++++++...+....   ..|.... 
T Consensus       217 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~---~~~~~~~-  292 (445)
T d3bc8a1         217 AVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---KMYPGRA-  292 (445)
T ss_dssp             HHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH---HHSCSCB-
T ss_pred             HHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHH---HHHhhcc-
Confidence            999999999999999999876554433322223456699999999999999999999998766554321   1111110 


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                    .....+.+|+++..++.+++.+..++..++++|+
T Consensus       293 ----------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  326 (445)
T d3bc8a1         293 ----------------------------------------------SASPSLDVLITLLSLGCSGYRKLLKERKEMFVYL  326 (445)
T ss_dssp             ----------------------------------------------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------cCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence                                                          1123467888899999999999999999999999


Q ss_pred             HHHhcCCC---CeEEeCCCC-ceeEEEEEcCC----chHHHHHHHHHhccCcE---EEEE--------eEE---------
Q psy3048         266 ADLVEKDD---RFELVCPPS-MGLVCFRLKGD----NDLTNQLYERLMSHKQI---YIIK--------ASF---------  317 (367)
Q Consensus       266 ~~~L~~~~---g~~~~~~~~-~~~v~f~~~~~----~~~~~~l~~~L~~~g~~---~~~~--------~~~---------  317 (367)
                      .++|.++.   +..++..+. ....++.+...    .....++...|.+.++-   ...+        ...         
T Consensus       327 ~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~  406 (445)
T d3bc8a1         327 STQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADN  406 (445)
T ss_dssp             HHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSC
T ss_pred             HHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCcc
Confidence            99987643   555554332 23333333221    22344666677766531   0000        000         


Q ss_pred             CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy3048         318 QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPR  355 (367)
Q Consensus       318 ~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~~~  355 (367)
                      ....++|+++ ..++|++|||+++++|++++++++++.
T Consensus       407 ~~~~~i~i~~-~~~~T~eDID~~v~~L~kilk~~rk~~  443 (445)
T d3bc8a1         407 YPCAYLNAAA-AIGMKMQDVDLFIKRLDKCLNIVRKEQ  443 (445)
T ss_dssp             CSSCEEEEEC-CTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeC-cCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            0134689854 688999999999999999999987653

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.96  E-value=3.1e-28  Score=234.61  Aligned_cols=262  Identities=16%  Similarity=0.141  Sum_probs=197.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +.+|++|+..|+|+.+++.+.|++++.|++   ++++.+|+++|++++++..+.+.. .+|+++++++++|.++|+++|+
T Consensus       156 ~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~-~~v~~~~~~~~~g~~~~l~~i~  234 (434)
T d2z67a1         156 SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR-PCVLSTLTFFPPRNSDDIVEIA  234 (434)
T ss_dssp             CCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCC-EEEEEESSCCTTBCCCCHHHHH
T ss_pred             CceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCc-eEEEeccCcCCCccccCHHHHH
Confidence            567899999999999999999999888764   456899999999999987765443 4788999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++||+||+|+|||+|||++....+...... +...+|++++++||++++|.|+|+++++++..+++...   .+..    
T Consensus       235 ~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~-~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~---~~~~----  306 (434)
T d2z67a1         235 KICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPG----  306 (434)
T ss_dssp             HHHHHHTCCEEEECTTTTTCHHHHHHHHHH-HTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCS----
T ss_pred             HHHHHhCCeEEEeccchhhhhhcccccccc-ccCCcceEEEcCccccccCCCccccccCcHHHHHHHHh---hccc----
Confidence            999999999999999987654433332222 12257999999999999999999999988766543210   0000    


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                 .+....+..+|+++..++.+|+++..++..++++|++
T Consensus       307 -------------------------------------------~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~  343 (434)
T d2z67a1         307 -------------------------------------------RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD  343 (434)
T ss_dssp             -------------------------------------------CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------ccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                                                       0111235677888999999999999999999999999


Q ss_pred             HHhcCC---CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEE--E-EE--------eEECCeeEEEEEecCCCC
Q psy3048         267 DLVEKD---DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIY--I-IK--------ASFQGRPFLRFVVTSPET  332 (367)
Q Consensus       267 ~~L~~~---~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~--~-~~--------~~~~~~~~lRi~~~~~~~  332 (367)
                      ++|+++   .++.++.++....+.+....   ...++...|.++|+..  + .+        .......++|++ .+.++
T Consensus       344 ~~L~~l~~~~g~~ll~~~~~~~~~~~~~~---~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~-~s~~~  419 (434)
T d2z67a1         344 ELLNDLSKKTGGKFLDVESPIASCISVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN-AAIGV  419 (434)
T ss_dssp             HHHHHHHHHSSCCBCCCCCSSEEEEECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE-CCTTC
T ss_pred             HHHHHhhhhcCceecCCCCCceeeeecCC---CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEe-cCCCC
Confidence            998775   36666666655666665533   2567888888887321  0 00        001124689995 47889


Q ss_pred             CHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQ  347 (367)
Q Consensus       333 ~~edid~li~~l~~~  347 (367)
                      |+||||+++++|+++
T Consensus       420 T~edID~~i~~L~kI  434 (434)
T d2z67a1         420 RTEDIVNSVSKLEKI  434 (434)
T ss_dssp             CHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999999863

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.8e-27  Score=225.92  Aligned_cols=281  Identities=14%  Similarity=0.087  Sum_probs=202.5

Q ss_pred             cCceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChh
Q psy3048          28 KSRLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE  103 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~  103 (367)
                      .+.-.|++++.+|.|...+.    +..|++++.+|+++++.+|++.+++++++.|      .+|++++.+|.+|.+.|++
T Consensus       110 ~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t------~lv~~~~v~~~tG~~~pi~  183 (405)
T d1jf9a_         110 RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKT------RLLAITHVSNVLGTENPLA  183 (405)
T ss_dssp             CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTE------EEEEEESBCTTTCCBCCHH
T ss_pred             CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCc------EEEEEecCCCcccccCchH
Confidence            44567888899999965554    4569999999999999999999999988877      4999999999999999999


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|+++||++|++++||++|+.+.++.+....   +   +|++++++|||+ +|+|+|++|+++.. +...    ++....
T Consensus       184 ~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~---~---~D~~~~s~hK~~-Gp~G~g~l~v~~~~-~~~~----~~~~~~  251 (405)
T d1jf9a_         184 EMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---D---CDFYVFSGHKLY-GPTGIGILYVKEAL-LQEM----PPWEGG  251 (405)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---T---CSEEEEEGGGTT-SCSSCEEEEECHHH-HTTC----CCSSCS
T ss_pred             HhhhHHHHcCCeeecccceeccccccchhhc---C---Cceeeccccccc-cCCCceeeeechhh-hccc----Cccccc
Confidence            9999999999999999999999887653322   3   499999999995 79999999997542 2221    111111


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      ..........+.  ..|    ...+               ..+.....+....+++..+++.+...|++.+.++...+.+
T Consensus       252 ~~~~~~~~~~~~--~~~----~~~~---------------~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~  310 (405)
T d1jf9a_         252 GSMIATVSLSEG--TTW----TKAP---------------WRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMH  310 (405)
T ss_dssp             SSSEEECCTTTC--CEE----CCTT---------------GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccccCccccccc--ccc----ccch---------------hhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            100000000000  000    0000               1111111111234666777887777899999999999999


Q ss_pred             HHHHHhcCCCCeEEeCCC-CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---------CCeeEEEEEecCCCCC
Q psy3048         264 KFADLVEKDDRFELVCPP-SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---------QGRPFLRFVVTSPETN  333 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---------~~~~~lRi~~~~~~~~  333 (367)
                      ++.+.++..+.+.+..+. ..++++|.+++..  ..++.+.|.+.|+ .+..+..         ..++++|+|+ +++||
T Consensus       311 ~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~--~~~~~~~L~~~gI-~v~~G~~c~~~~~~~~~~~g~iRiS~-~~ynt  386 (405)
T d1jf9a_         311 YALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--AYDVGSFLDNYGI-AVRTGHHCAMPLMAYYNVPAMCRASL-AMYNT  386 (405)
T ss_dssp             HHHHHHTTSTTEEEESCTTCCSEEEEEETTCC--HHHHHHHHHHTTE-ECEEECTTCHHHHHHTTCSCEEEEEC-CTTCC
T ss_pred             HHHhhhhcCCcccccCCcCcCcEEEEEcCCCC--HHHHHHHHHHCCc-EEEccchhhhhHHHhcCCCCEEEEEC-CCCCC
Confidence            999999999888777653 5789999987533  5677788877774 4432211         2246899976 79999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy3048         334 QCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~  351 (367)
                      ++|||+++++|+++.+-+
T Consensus       387 ~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         387 HEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999997754

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.95  E-value=1.3e-26  Score=221.61  Aligned_cols=278  Identities=10%  Similarity=0.042  Sum_probs=201.6

Q ss_pred             CceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|++++.+|.+...+.    ...|++++.++.+.++..+.++|++++++++      .+|++++.++.+|.+.|+++
T Consensus       111 ~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t------~lv~i~~~~~~tG~~~p~~~  184 (408)
T d1t3ia_         111 AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKT------KLVTVVHISNTLGCVNPAEE  184 (408)
T ss_dssp             TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTE------EEEEEESBCTTTCBBCCHHH
T ss_pred             CCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCc------eEEEEecccccccccCcHHH
Confidence            4567888999999865554    4469999999998889999999999998877      49999999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |+++||++|++++||++|+.+.++.+....   +   +|++++++|||+ +|+|+|++++++.. +..    .+++....
T Consensus       185 i~~~~~~~g~~~ivDa~q~~g~~~id~~~~---~---~D~~~~s~hK~~-gp~G~g~l~v~~~~-~~~----~~p~~~g~  252 (408)
T d1t3ia_         185 IAQLAHQAGAKVLVDACQSAPHYPLDVQLI---D---CDWLVASGHKMC-APTGIGFLYGKEEI-LEA----MPPFFGGG  252 (408)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSCCCHHHH---T---CSEEEEEGGGTT-SCTTCEEEEECHHH-HHH----SCCCSCST
T ss_pred             HhhhhhccCceeeeccceeccccccccccc---C---CceEEecccccc-CCCCccccccchhh-hhc----CCceecCC
Confidence            999999999999999999999887754322   3   499999999994 79999999997653 221    12222221


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..........+        .+..++.-++    .|+          ..-...+++..+++.+...|++++.++...+.++
T Consensus       253 ~~~~~~~~~~~--------~~~~~~~r~e----~Gt----------~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~  310 (408)
T d1t3ia_         253 EMIAEVFFDHF--------TTGELPHKFE----AGT----------PAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY  310 (408)
T ss_dssp             TSEEEECSSCE--------EECCTTGGGC----CSS----------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccccccccccc--------ccCCchhhhc----CCc----------HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence            11000000000        0000000011    111          1112235566777777778999999999999999


Q ss_pred             HHHHhcCCCCeEEeCCC-----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE---------ECCeeEEEEEecCC
Q psy3048         265 FADLVEKDDRFELVCPP-----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS---------FQGRPFLRFVVTSP  330 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~-----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------~~~~~~lRi~~~~~  330 (367)
                      +.+.+.+.+++.++.++     ..++++|.+++.  ...++...|.++|+ .+..+.         ...++.+|||+ ++
T Consensus       311 l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~--~~~~v~~~L~~~gI-~v~~G~~c~~~~~~~~~~~g~vRiS~-~~  386 (408)
T d1t3ia_         311 LWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL--HASDVATMVDQDGI-AIRSGHHCTQPLHRLFDASGSARASL-YF  386 (408)
T ss_dssp             HHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB--CHHHHHHHHHTTTE-ECBCSCTTCHHHHHHTTCCCCEEEEC-CT
T ss_pred             HhhhhccCccccccCCCccccCcceEEEEEeCCC--CHHHHHHHHhhCCc-EEecCcccccHHHHhhcCCccEEEEC-CC
Confidence            99999999999988642     457899988753  35678888888874 343211         12245799976 79


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~  350 (367)
                      +||++|||+++++|+++++.
T Consensus       387 ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         387 YNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.94  E-value=1.1e-25  Score=212.73  Aligned_cols=277  Identities=13%  Similarity=0.128  Sum_probs=187.6

Q ss_pred             cCceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCc--CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC
Q psy3048          28 KSRLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVL--RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN  101 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~--d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d  101 (367)
                      .+.-.|++++.+|.++..+++    ..|++++.++.+.+...  ..+.+++++++.+      .++++++++|++|.+.|
T Consensus        90 ~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t------~~v~i~~~~n~tG~~~~  163 (381)
T d1elua_          90 HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT------RLVILSHLLWNTGQVLP  163 (381)
T ss_dssp             CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE------EEEEEESBCTTTCCBCC
T ss_pred             cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccc------cccccccccccccccch
Confidence            345667778899998766543    46999999987543322  2455666555554      58999999999999999


Q ss_pred             hhhHHHHHhh----cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCC
Q psy3048         102 LEELGPICQE----YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD  177 (367)
Q Consensus       102 l~~I~~l~~~----~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~  177 (367)
                      +++|.++||+    +++++++|++|+.+..+.+..     . -.+|++++++|||+++|.|+|++++++.. ....   .
T Consensus       164 ~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~-----~-~~~D~~~~s~~K~~~~p~G~g~l~~~~~~-~~~~---~  233 (381)
T d1elua_         164 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS-----R-LEVDYYAFTGHKWFAGPAGVGGLYIHGDC-LGEI---N  233 (381)
T ss_dssp             HHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTT-----T-SCCSEEEEESSSTTCCCTTCEEEEECTTT-GGGC---C
T ss_pred             hhHHHHHHhhccccccccccccccccccccccccc-----c-cccccccccccccccccchhhHHHhhHHH-HHhc---C
Confidence            9999999998    469999999999876654321     1 14699999999999999999999997653 2221   1


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHH-HHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGL-QAYLR  256 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~  256 (367)
                      +.+.......  .....     +.. .+....              ..+..........+.+.++++.+...|. +.+.+
T Consensus       234 p~~~~~~~~~--~~~~~-----~~~-~~~~~~--------------~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~  291 (381)
T d1elua_         234 PTYVGWRSIT--YGAKG-----EPT-GWAEGG--------------KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQ  291 (381)
T ss_dssp             CCSCCTTTEE--ECTTS-----CEE-EECSGG--------------GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccccccc--ccccc-----ccc-cccccc--------------cccccccccchhhhhhhhhhhhHHHhcccccchh
Confidence            2221111000  00000     000 000000              0011111111233556677777666664 55578


Q ss_pred             HHHHHHHHHHHHhcCCCCeEEeCC--CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCH
Q psy3048         257 KHISLAKKFADLVEKDDRFELVCP--PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQ  334 (367)
Q Consensus       257 ~~~~la~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~  334 (367)
                      +..++++++.++|++++|++++.+  +..++++|.+.+ ....+++.+.|.++|+ .+  .....++++|+|+ +.+||+
T Consensus       292 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~-~~~~~~i~~~L~~~gi-~v--~~~~~~~~lRis~-~~~nt~  366 (381)
T d1elua_         292 AICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDS-PLGHRAIVQKLEEQRI-YL--RTIADPDCIRACC-HYITDE  366 (381)
T ss_dssp             HHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECS-SSCHHHHHHHHHHTTE-EC--EEETTTTEEEEEC-CTTCCH
T ss_pred             hhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCC-CCCHHHHHHHHHhCCc-EE--EecCCCCEEEEec-CCCCCH
Confidence            889999999999999999999864  567899998865 2335678888998884 33  2345567999976 689999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         335 CDVAFAWNEISHQ  347 (367)
Q Consensus       335 edid~li~~l~~~  347 (367)
                      +|||+++++|+++
T Consensus       367 edid~ll~~l~e~  379 (381)
T d1elua_         367 EEINHLLARLADF  379 (381)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.92  E-value=1.9e-24  Score=205.62  Aligned_cols=276  Identities=15%  Similarity=0.051  Sum_probs=173.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +.+|+ ++..|++........+.++..++.+.++..+++++++++++.|+      +|++++.+|.+|.+.|+++|+++|
T Consensus       118 ~~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~------lV~i~~v~~~tG~~~pv~~i~~~~  190 (404)
T d1qz9a_         118 RRVIV-TETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTA------VVMLTHVNYKTGYMHDMQALTALS  190 (404)
T ss_dssp             CCEEE-EETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTTEE------EEEEESBCTTTCBBCCHHHHHHHH
T ss_pred             cEEEE-eccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCCCce------EEEEecccccccceecHHHHhccc
Confidence            34444 45566665554443344444444444566788999999988874      999999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      |++|++++||++|+.+.+..+....   +   +|++++++|||+++|+|.+++++.+...+... ............. .
T Consensus       191 ~~~~~~~~vD~~q~~g~~~~~~~~~---~---~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~  262 (404)
T d1qz9a_         191 HECGALAIWDLAHSAGAVPVDLHQA---G---ADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLV-PQPLSGWFGHSRQ-F  262 (404)
T ss_dssp             HHHTCEEEEECTTTTTTSCCCHHHH---T---CSEEEECSSSTTCCCTTCCCEEEECTTTTTTS-CCSCCCGGGBCTT-S
T ss_pred             cccccceeEEeeccccccccccccc---c---ceEEEEechhhcccCCceEEEEEechhhhhhC-CccccccCCcccc-c
Confidence            9999999999999998887654332   3   49999999999988877555444444333221 1111111110000 0


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY---GLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~g~~~~~~~~~~la~~l~  266 (367)
                      .....+                   ....+.   ..+............+..++..+   +...+++...........+.
T Consensus       263 ~~~~~~-------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  320 (404)
T d1qz9a_         263 AMEPRY-------------------EPSNGI---ARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV  320 (404)
T ss_dssp             CCCSSC-------------------CBCSSG---GGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-------------------cccccc---hhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence            000000                   000000   00111111111223333344443   44445554455555555566


Q ss_pred             HHhcCCCCeEEeCCC----CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPP----SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      ..+...+|++++.|.    ..++++|..++    ..++.+.|.++|++ +   ..+.++++|||+.+.|||++|||++++
T Consensus       321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~----~~~v~~~L~~~gi~-~---~~r~~~~lRiS~~h~ynt~~did~~~~  392 (404)
T d1qz9a_         321 EQRCAAHELTLVTPREHAKRGSHVSFEHPE----GYAVIQALIDRGVI-G---DYREPRIMRFGFTPLYTTFTEVWDAVQ  392 (404)
T ss_dssp             HHHHTTSCCEECSCSSGGGBCSEEEEECTT----HHHHHHHHHTTTEE-C---EEETTTEEEEECCTTTCCHHHHHHHHH
T ss_pred             HhhccCCCEEEECCCCccceeeEEEEecCC----HHHHHHHHHHCCCE-E---eecCCCeEEEECCCCCCCHHHHHHHHH
Confidence            666777899998753    35788998764    66899999988843 2   233446899987667899999999999


Q ss_pred             HHHHHHHH
Q psy3048         343 EISHQSSE  350 (367)
Q Consensus       343 ~l~~~~~~  350 (367)
                      +|++++++
T Consensus       393 ~L~~vl~~  400 (404)
T d1qz9a_         393 ILGEILDR  400 (404)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.3e-23  Score=197.44  Aligned_cols=267  Identities=13%  Similarity=0.152  Sum_probs=181.2

Q ss_pred             cCceEEEecCCcchhHHHHHH---hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          28 KSRLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~---~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .+.-.|++++..|.+.....+   ..|++++.++.++++.+|+++++++++++|+      +|++++++|++|.+.|+++
T Consensus        91 ~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~------lv~is~~~n~tG~~~~~~~  164 (391)
T d1p3wa_          91 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTI------LVSIMHVNNEIGVVQDIAA  164 (391)
T ss_dssp             GGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEE------EEECCSBCTTTCCBCCHHH
T ss_pred             CCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcE------EEEEECCCCCCeeECCHHH
Confidence            345678888999999766554   4699999999988899999999999988874      8999999999999999999


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      |+++||+||+++++|++|+.+..+.+...   .   .+|++++++|||+ +|+|+|+++++... +..   ..+.+.+..
T Consensus       165 I~~~~~~~~~~~ivD~~~~~g~~~~d~~~---~---~~D~~~~s~~k~~-g~~g~g~~~~~~~~-~~~---~~~~~~gg~  233 (391)
T d1p3wa_         165 IGEMCRARGIIYHVDATQSVGKLPIDLSQ---L---KVDLMSFSGHKIY-GPKGIGALYVRRKP-RVR---IEAQMHGGG  233 (391)
T ss_dssp             HHHHHHHHTCEEEEECTTTBTTBCCCTTT---S---CCSEEEEESTTTT-SCSSCEEEEECBTT-BCC---CCCSSCSSC
T ss_pred             HHHHhccCCcEEEEeeccccCCccccchh---c---ccccccccccccc-CCCceEEEEEecch-hcc---cCCcccCCc
Confidence            99999999999999999998877654311   1   3599999999995 78899999997643 211   111111111


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..      ..+                     ..+       .   .......++...+... .+...+..++..++..+
T Consensus       234 ~~------~~~---------------------~~~-------~---~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  275 (391)
T d1p3wa_         234 HE------RGM---------------------RSG-------T---LPVHQIVGMGEAYRIA-KEEMATEMERLRGLRNR  275 (391)
T ss_dssp             TT------TTT---------------------SCS-------C---CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             cc------cCc---------------------ccC-------c---chhhhhhhhhhhhhHH-HHHhhHHHHHHHHHHHH
Confidence            00      000                     000       0   0000112222222222 33445556788899999


Q ss_pred             HHHHhcCCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhc----cCcEEEEEeEEC--------------CeeEE
Q psy3048         265 FADLVEKDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMS----HKQIYIIKASFQ--------------GRPFL  323 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~----~g~~~~~~~~~~--------------~~~~l  323 (367)
                      +.+.|.++++..+....   ...+++|..+...  ...+...|..    .|.. +......              ..+++
T Consensus       276 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~i~v~~G~~-c~~~~~~~~~~l~~~g~~~~~~~g~i  352 (391)
T d1p3wa_         276 LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVE--GESLIMALKDLAVSSGSA-CTSASLEPSYVLRALGLNDELAHSSI  352 (391)
T ss_dssp             HHHTTTTSTTEEECSCTTTSCTTEEEEEETTSC--HHHHHHHTTTEECBCCCC-------CCCHHHHHHTCCHHHHHTEE
T ss_pred             HHHHHHhhcCeeecccccccCceEEEEEeCCCC--hHHHHHHhCCCEEEcccc-ccCCccchhHHHHHcCCCccccCCEE
Confidence            99999999887765432   3456667665432  4556666542    2211 1111111              12479


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                      |+|+ +.+||++|||+++++|++++++++.
T Consensus       353 RiS~-~~~nt~edid~l~~~l~~~l~~lr~  381 (391)
T d1p3wa_         353 RFSL-GRFTTEEEIDYTIELVRKSIGRLRD  381 (391)
T ss_dssp             EEEC-CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEec-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9975 7899999999999999999988753

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=8.2e-23  Score=191.13  Aligned_cols=267  Identities=15%  Similarity=0.162  Sum_probs=171.4

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      +.-.|++++.+|+|...+++..|++++.+|++  .++.+|+++|++++++.++.. .+.+|++++++|++|.+.|+++|+
T Consensus        85 ~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~  163 (364)
T d2e7ja1          85 KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIA  163 (364)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             CCcEEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhhe
Confidence            34567789999999999999999999999986  368999999999999887643 346788999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      ++|++||+++|+|+||+.+.++.+....   +   +|++++++||++++|.++|+++.++. ...........+......
T Consensus       164 ~ia~~~~i~livD~a~~~g~~~~~~~~~---g---~D~~~~S~~K~~~~~g~~g~l~~~~~-~~~~~~~~~~~~~~~~~~  236 (364)
T d2e7ja1         164 KVCSEYDVPLLVNGAYAIGRMPVSLKEI---G---ADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVE  236 (364)
T ss_dssp             HHHHTTTCCEEEECTTTBTTBCCCHHHH---T---CSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSBGG
T ss_pred             eccccccchhhccccchhhhhhhccccc---c---cceeeeccccccCCCCCEEEEEECHH-HHHHHHhhccccCccccc
Confidence            9999999999999999887765543221   3   49999999999998888898888653 222221111111111000


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                              +     .+                        ....+  .....+.+++... .+.++ ...+..+.++++.
T Consensus       237 --------~-----~~------------------------~~~~~--~~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~  275 (364)
T d2e7ja1         237 --------L-----LG------------------------CTARG--ATIITLMASFPHV-RERIK-RWDEEVEKARRFA  275 (364)
T ss_dssp             --------G-----TT------------------------CCCCS--HHHHHHHHHHHHH-HHHGG-GHHHHHHHHHHHH
T ss_pred             --------c-----cc------------------------cccch--hHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHH
Confidence                    0     00                        00000  1112222333322 11222 2334457788899


Q ss_pred             HHhcCCCCeEEeCC-C-CceeEEEEEcCCch-------HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         267 DLVEKDDRFELVCP-P-SMGLVCFRLKGDND-------LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       267 ~~L~~~~g~~~~~~-~-~~~~v~f~~~~~~~-------~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      ++|.++ |+.++.+ + ....+.+..+....       ....+...|...+...+   .......+|++  ...++++||
T Consensus       276 ~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~~~~~~~~--~~~~t~edi  349 (364)
T d2e7ja1         276 AEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGI---KPGLTRYFKLS--TYGLSDEEV  349 (364)
T ss_dssp             HHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECS---CTTCCSEEEEE--CTTCCHHHH
T ss_pred             HHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCcee---cCCCcceEEEe--ccCCCHHHH
Confidence            999887 7777653 3 33333333221000       01123333444442211   11223366763  456789999


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         338 AFAWNEISHQSSE  350 (367)
Q Consensus       338 d~li~~l~~~~~~  350 (367)
                      |+++++|++++++
T Consensus       350 d~~~~~l~ei~~~  362 (364)
T d2e7ja1         350 DYVLNAFKEIIEK  362 (364)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-23  Score=198.01  Aligned_cols=287  Identities=14%  Similarity=0.113  Sum_probs=188.5

Q ss_pred             ceEEEecCCcchhHHHH--HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          30 RLVAYASDQSNSSVEKS--AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~--~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +-.+++....|.+....  +...+..+..+..+....+|.+++++.+....     +.+|++++.+|.+|.+.|+++|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~n~tG~i~pi~~i~~  168 (388)
T d1h0ca_          94 GDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-----PVLLFLTHGESSTGVLQPLDGFGE  168 (388)
T ss_dssp             SCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHH
T ss_pred             CCceeeecccceeeeeccccccccccccccccCCccccchHHHHHHhccCC-----cceEEEeeeeeccccccCHHHHHH
Confidence            33444455666664333  33456677777777788899999988876643     358999999999999999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +||+||++++||++|+.+.++.+...   .   .+|++++++|||+++|.|+|+++++... ++..........      
T Consensus       169 ~~~~~g~~~~vD~~qs~g~~~~d~~~---~---~~D~~~~s~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~------  235 (388)
T d1h0ca_         169 LCHRYKCLLLVDSVASLGGTPLYMDR---Q---GIDILYSGSQKALNAPPGTSLISFSDKA-KKKMYSRKTKPF------  235 (388)
T ss_dssp             HHHTTTCEEEEECTTTTTTSCCCTTT---T---TCSEEEEESSSTTCCCTTCEEEEECHHH-HHHHTTCSSCCS------
T ss_pred             Hhhcccccceeccccccccccccccc---c---ccceecccccccccCCCceEEEeecHHH-HHhhhhcccccc------
Confidence            99999999999999998877654321   2   4599999999999999999999986542 222211110000      


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                        ....++   .+......       ....      ..+............+.++++.+...|++.+.++..++.+++++
T Consensus       236 --~~~~~~---~~~~~~~~-------~~~~------~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~  297 (388)
T d1h0ca_         236 --SFYLDI---KWLANFWG-------CDDQ------PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHG  297 (388)
T ss_dssp             --CSTTCH---HHHHHHTT-------CSSS------CCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             --cccccc---chhhhhhh-------hccc------cccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHH
Confidence              000000   00000000       0000      00011111112234566677777778899999999999999999


Q ss_pred             HhcCCCCeEEeCC-C---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCP-P---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       268 ~L~~~~g~~~~~~-~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      .+... |+.++.+ +   ..++++|.++. .....++.++|.+++.+.+..+.. .....+||+...++++++|||++++
T Consensus       298 ~~~~~-g~~~~~~~~~~rs~~i~~~~~p~-~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~  375 (388)
T d1h0ca_         298 RLQAL-GLQLFVKDPALRLPTVTTVAVPA-GYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTE  375 (388)
T ss_dssp             HHHHH-TCCBSSCSGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred             HHhhc-CcccccCCHHHcCCeEEEEECCC-CCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHH
Confidence            99886 5555442 2   23577888854 334678888887774455543321 1234899973457789999999999


Q ss_pred             HHHHHHHHhhCC
Q psy3048         343 EISHQSSEMNLP  354 (367)
Q Consensus       343 ~l~~~~~~~~~~  354 (367)
                      +|+++++++.++
T Consensus       376 aL~~~L~~l~k~  387 (388)
T d1h0ca_         376 ALRAALQHCPKK  387 (388)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHHHHhccc
Confidence            999999998764

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2e-21  Score=182.94  Aligned_cols=261  Identities=12%  Similarity=0.102  Sum_probs=174.8

Q ss_pred             cCceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          28 KSRLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      .++-+|+++...|.+.....   +..|++++.||+++++.+|++++++++++++      .+|+++++++.+|.+.|+++
T Consensus        87 ~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t------~lv~is~v~~~tG~~~~~~~  160 (376)
T d1eg5a_          87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDT------FLVSIMAANNEVGTIQPVED  160 (376)
T ss_dssp             TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTE------EEEEEESBCTTTCBBCCHHH
T ss_pred             ccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCc------eEEEEECCccccceeeeehh
Confidence            34456666666776655544   4469999999999899999999999998877      49999999999999999999


Q ss_pred             HHHHHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         105 LGPICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       105 I~~l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      |.++|+.+  |+.++||++|+.+.++.+...      ..+|++++++|||+ +|+|+|++|+++...+      .+.+..
T Consensus       161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~------~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~~------~p~~~g  227 (376)
T d1eg5a_         161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEK------LEVDYASFSAHKFH-GPKGVGITYIRKGVPI------RPLIHG  227 (376)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTTTTSCCCCTT------TCCSEEEEEGGGGT-SCTTCEEEEECTTSCC------CCSBCS
T ss_pred             hhhhhhhcccCceeEEEeeeccccccccccc------cCccceecccceee-cCCCceeEEeccCccc------CCcccC
Confidence            99998665  899999999999887664311      14699999999995 7999999999764322      122211


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ....      ..+                               .. ...............................+.
T Consensus       228 ~~~~------~~~-------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (376)
T d1eg5a_         228 GGQE------RGL-------------------------------RS-GTQNVPGIVGAARAMEIAVEELSEAAKHMEKLR  269 (376)
T ss_dssp             SCTT------TTT-------------------------------BC-SCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCCc------ccc-------------------------------cC-CcccchhhhhHHHHhhccccchhhhhhhhhhhh
Confidence            1110      000                               00 000001111111112222334555666777788


Q ss_pred             HHHHHHhcCCCCeEEeCC--CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEe------EEC--------------Ce
Q psy3048         263 KKFADLVEKDDRFELVCP--PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKA------SFQ--------------GR  320 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~------~~~--------------~~  320 (367)
                      +++.+.|.......+...  .....+.+.+++.  ....+...|.++|+. +..+      ...              ..
T Consensus       270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~gI~-vr~G~~c~~~~~~~~~~l~~~gi~~~~~~  346 (376)
T d1eg5a_         270 SKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI--RGSTLQNLLSGYGIY-VSTSSACTSKDERLRHVLDAMGVDRRIAQ  346 (376)
T ss_dssp             HHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC--CHHHHHHHHHHTTEE-CBC------------CHHHHTTCCHHHHH
T ss_pred             hhhccccccccccccccccccccceeeeccCCC--CHHHHHHHHhhCCeE-EeCcchhcCCccchhHHHHHcCCCcccCC
Confidence            889998888744433222  2456677777653  256777777777742 2111      110              12


Q ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         321 PFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       321 ~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +++|+|+ +.|||++|||+++++|++++.
T Consensus       347 ~~iRiS~-~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         347 GAIRISL-CKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             HEEEEEC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEec-CCCCCHHHHHHHHHHHHHHHh
Confidence            4799976 689999999999999999976

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=2e-21  Score=181.57  Aligned_cols=276  Identities=14%  Similarity=0.092  Sum_probs=169.1

Q ss_pred             ceEEEecCCcchhHH-HHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          30 RLVAYASDQSNSSVE-KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~-~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.+++++...+.+.. ......+.....+....+...+.+..+.+.....+    +.++.+++.+|.+|.+.|+++|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~tG~~~~i~~i~~~  152 (361)
T d1m32a_          77 DKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPT----ISHIAMVHSETTTGMLNPIDEVGAL  152 (361)
T ss_dssp             CCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTT----CCEEEEESEETTTTEECCHHHHHHH
T ss_pred             cccceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccC----ccceEEEeeecccccchhhhhhhhh
Confidence            344444433333322 22333455666666554444444443333322221    3589999999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      ||+||+++++|++|+.+..+.+..+   .   .+|++++++|||+++|+|.|+++++++. ..+.   .+... ....  
T Consensus       153 ~~~~g~~~~vDa~qs~G~~~~d~~~---~---~~D~~~~s~~K~l~gp~G~g~l~~~~~~-~~~~---~~~~~-~~~~--  219 (361)
T d1m32a_         153 AHRYGKTYIVDAMSSFGGIPMDIAA---L---HIDYLISSANKCIQGVPGFAFVIAREQK-LAAC---KGHSR-SLSL--  219 (361)
T ss_dssp             HHHHTCEEEEECTTTTTTSCCCTTT---T---TCSEEEEESSSTTCCCSSEEEEEEEHHH-HTTC---TTCCS-CSTT--
T ss_pred             hcccceeeEeecccccCcccccccc---c---ccceEEeeecccccCCCCceEEEechhh-hhhh---ccccc-cccc--
Confidence            9999999999999998887664321   2   4599999999999999999999997643 2211   11111 0000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFAD  267 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~la~~l~~  267 (367)
                          ...  ..+..       .......          .......+....+..++.....+| .....++...+++.+.+
T Consensus       220 ----~~~--~~~~~-------~~~~~~~----------~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  276 (361)
T d1m32a_         220 ----DLY--AQWRC-------MEDNHGK----------WRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVA  276 (361)
T ss_dssp             ----CHH--HHHHH-------HHHTTTC----------CSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ----cch--hhhcc-------ccccccc----------cCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence                000  00000       0000000          001111123345555565555554 55666777888888988


Q ss_pred             HhcCCCCeEEeCCC--C-ceeEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPP--S-MGLVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~--~-~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .+... |+.+..++  + ..+++|.++.. .....++.+.|.++|.+ +..+.....+.+||+ +.++++++||++++++
T Consensus       277 ~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~-i~~G~~~~~~~~Ris-~~g~~~~~di~~lv~a  353 (361)
T d1m32a_         277 GMRAL-GFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFV-IYPGKVSQSDCFRIG-NIGEVYAADITALLTA  353 (361)
T ss_dssp             HHHHT-TCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEE-CEECCCSSSCEEEEE-CCSSCCHHHHHHHHHH
T ss_pred             HHhhc-CCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcE-EECCCcCCCCEEEEe-CCCCCCHHHHHHHHHH
Confidence            88876 66655443  2 34567877542 23356889999999954 444444456689996 4567899999999999


Q ss_pred             HHHHH
Q psy3048         344 ISHQS  348 (367)
Q Consensus       344 l~~~~  348 (367)
                      |++++
T Consensus       354 l~~~L  358 (361)
T d1m32a_         354 IRTAM  358 (361)
T ss_dssp             HHHHC
T ss_pred             HHHHc
Confidence            99873

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.85  E-value=2.5e-20  Score=175.54  Aligned_cols=259  Identities=14%  Similarity=0.063  Sum_probs=183.8

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +..+|+.++..|.|+..+++..+++++.++++     |+++|++.++...+  ..+.+|++....++.|.+.|+++|.+|
T Consensus       130 ~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~apl~~l~~L  202 (396)
T d2bwna1         130 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDI  202 (396)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred             CCCceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhcc--cCceeEEEEeeccCcccccccHhHHHH
Confidence            45688999999999999999999999999876     88899888765433  234688888999999999999999999


Q ss_pred             HhhcCcEEEEecccccccccCh-hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLP-EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~-~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||++++||+|||.+.+... ..-....+ ....|+++.+..|.+++   .|.++..+............+|+++...
T Consensus       203 ~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~~~~~~~ifStal  279 (396)
T d2bwna1         203 AEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFSTSL  279 (396)
T ss_dssp             HHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTSBCC
T ss_pred             hhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc---cccccchhHHHHHHHHhhcchhhhcccC
Confidence            9999999999999998776321 00000011 13469999999999975   3444555555444433445566655422


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  .+ ..+.....+++.+..+..++..++...+.++++
T Consensus       280 --------------------------------------------pp-~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~  314 (396)
T d2bwna1         280 --------------------------------------------PP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLK  314 (396)
T ss_dssp             --------------------------------------------CH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cH-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence                                                        00 112333444555444445556677788999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEE----EeEECCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYII----KASFQGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~----~~~~~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      +.|.+. |+.+. +..++++.+.+.. +..+.++.++|.+ +|+ ++.    |+...+...+|+++ +..+|++|||+++
T Consensus       315 ~~l~~~-g~~~~-~~~spIvpv~ig~-~~~~~~~a~~lL~e~Gi-~v~~i~~PtVp~g~~rlRi~l-sa~ht~edId~l~  389 (396)
T d2bwna1         315 MRLKAL-GMPII-DHGSHIVPVVIGD-PVHTKAVSDMLLSDYGV-YVQPINFPTVPRGTERLRFTP-SPVHDLKQIDGLV  389 (396)
T ss_dssp             HHHHHH-TCCBC-CCSSSCEEEECCC-HHHHHHHHHHHHHHHCE-ECCEECTTTSCTTCCEEEECC-CTTSCHHHHHHHH
T ss_pred             HHHHhc-CCCcC-CCCCCEEEEEeCC-HHHHHHHHHHHHHhCCE-EEEEECCCcCCCCCeeEEEEe-CccCCHHHHHHHH
Confidence            999886 77664 3567777777644 5566788888664 574 443    34446677899976 5677899999999


Q ss_pred             HHHHHH
Q psy3048         342 NEISHQ  347 (367)
Q Consensus       342 ~~l~~~  347 (367)
                      ++|+++
T Consensus       390 ~~L~~i  395 (396)
T d2bwna1         390 HAMDLL  395 (396)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999986

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-19  Score=172.03  Aligned_cols=265  Identities=11%  Similarity=0.054  Sum_probs=185.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +..+|+++...|.|+..++...++++..++..     |++++++++++..+++....+|++....++.|.+.||++|.+|
T Consensus       128 ~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L  202 (401)
T d1fc4a_         128 AEDAIISDALNHASIIDGVRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDL  202 (401)
T ss_dssp             TTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHH
T ss_pred             CCcEEEeCCcchHHHHccccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHH
Confidence            35678889999999999999999998888764     8889998888766655555678878888889999999999999


Q ss_pred             HhhcCcEEEEecccccccccCh-h-hhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLP-E-YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDA  186 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~  186 (367)
                      |++||+++++|+||+.+.+... . ...........|+++.+..|.+.++.  |.++..+.+.........++|++....
T Consensus       203 ~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~--Gg~v~g~~~~~~~l~~~~~~~~~s~~l  280 (401)
T d1fc4a_         203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSL  280 (401)
T ss_dssp             HHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCC
T ss_pred             HhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC--cccccCCHHHHHHHHcCChhhhhcCCC
Confidence            9999999999999998765421 1 01111123457999999999996543  344444444333222233444433321


Q ss_pred             CCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3048         187 PMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA  266 (367)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~  266 (367)
                                                                  ++ ..+.+...+++..  ....++.++..++.++++
T Consensus       281 --------------------------------------------~p-~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~  313 (401)
T d1fc4a_         281 --------------------------------------------AP-AIVAASIKVLEMV--EAGSELRDRLWANARQFR  313 (401)
T ss_dssp             --------------------------------------------CH-HHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------CH-HHHHHHHhhhccc--ccCHHHHHHHHHHHHHHH
Confidence                                                        00 0112222333322  223567788999999999


Q ss_pred             HHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE----eEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         267 DLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK----ASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       267 ~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~----~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.+.+. |+.+.. ..++++.+.+.. +....++.++|.++|+ ++.+    +...+...+|+++ +...|++|||++++
T Consensus       314 ~~l~~~-g~~~~~-~~~pIv~v~~~~-~~~a~~~~~~L~~~Gi-~v~~i~~PtVp~g~~~lRi~~-~a~hT~edId~~v~  388 (401)
T d1fc4a_         314 EQMSAA-GFTLAG-ADHAIIPVMLGD-AVVAQKFARELQKEGI-YVTGFFYPVVPKGQARIRTQM-SAAHTPEQITRAVE  388 (401)
T ss_dssp             HHHHHT-TCCBCC-SSSSEEEEEEEC-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEEEEEC-CTTCCHHHHHHHHH
T ss_pred             hhhccc-CCccCC-CCCCEEEEEECC-HHHHHHHHHHHHHCCc-eEEeECCCCCCCCCceEEEEE-CCCCCHHHHHHHHH
Confidence            999886 665543 455677666654 5556789999999985 4432    3345677899966 56778999999999


Q ss_pred             HHHHHHHHhh
Q psy3048         343 EISHQSSEMN  352 (367)
Q Consensus       343 ~l~~~~~~~~  352 (367)
                      +|+++.+++.
T Consensus       389 al~ev~~~lg  398 (401)
T d1fc4a_         389 AFTRIGKQLG  398 (401)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999988764

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.4e-20  Score=173.89  Aligned_cols=280  Identities=13%  Similarity=0.058  Sum_probs=185.9

Q ss_pred             eEEEecCCcchhHH--HHHHhCCcceEEEec-CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          31 LVAYASDQSNSSVE--KSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        31 ~~v~~s~~~H~s~~--~~~~~~g~~v~~v~~-~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      -.|++....|++..  ..++..|..++.+.. +.+...+.+.+++++.+..     +.++++++.++.+|...|++++.+
T Consensus        85 d~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~~~~~~~  159 (382)
T d2bkwa1          85 KNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNS-----YGAVTVTHVDTSTAVLSDLKAISQ  159 (382)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSC-----CSEEEEESEETTTTEECCHHHHHH
T ss_pred             CceEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhhcc-----chheeeeeccccccccccchhhhh
Confidence            35555667777743  334557777776654 3456788899998886543     358999999999999999999999


Q ss_pred             HHhhcC--cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhcc-----CCccc
Q psy3048         108 ICQEYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFF-----TDRVY  180 (367)
Q Consensus       108 l~~~~g--i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~-----~~~~y  180 (367)
                      +|++++  ++++||++++.+.++.+...   .+   +|++++++|||+++|+|+|+++++++. +.+...     ....|
T Consensus       160 ~~~~~~~~~~~~vDa~qs~g~~pid~~~---~g---iD~~~~s~~K~l~gP~G~g~l~vs~~~-~~~~~~~~~~~~~~~~  232 (382)
T d2bkwa1         160 AIKQTSPETFFVVDAVCSIGCEEFEFDE---WG---VDFALTASQKAIGAPAGLSISLCSSRF-MDYALNDSKNGHVHGY  232 (382)
T ss_dssp             HHHHHCTTSEEEEECTTTTTTSCCCTTT---TT---CSEEEEESSSTTCCCSCEEEEEECHHH-HHHHTCHHHHCCCSCS
T ss_pred             hccccccceeeeeecccccccccccccc---cC---eeEEeecccccCcCCCchhhhhccHHH-HhhhhhcccCCCcccc
Confidence            988765  99999999999888765322   23   499999999999999999999997643 222110     00111


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      ....             ..|....    + ......        ..+....+-....++..+|+.+..+|++++.+++.+
T Consensus       233 ~~~~-------------~~~~~~~----~-~~~~~~--------~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~  286 (382)
T d2bkwa1         233 FSSL-------------RRWTPIM----E-NYEAGK--------GAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE  286 (382)
T ss_dssp             TTCH-------------HHHHHHH----H-HHHTTC--------CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhh-------------hhhhhhh----h-cccccc--------cccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            1000             0000000    0 000000        000001111233667788888889999999999999


Q ss_pred             HHHHHHHHhcCCCCeEEeCC--C---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE--CCeeEEEEEecCCCCC
Q psy3048         261 LAKKFADLVEKDDRFELVCP--P---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF--QGRPFLRFVVTSPETN  333 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~--~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--~~~~~lRi~~~~~~~~  333 (367)
                      +++++++.+.+.+++..+.+  +   ...+++|..+.    ..++.+.|.++|+ .+..+..  .+...+||+.....++
T Consensus       287 l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~----~~~~~~~L~~~gi-~i~~G~~~~~~~~~~Ri~~~G~~~~  361 (382)
T d2bkwa1         287 MSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGV-VIAGGIHKDIGPKYIRIGHMGVTAC  361 (382)
T ss_dssp             HHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTE-ECBCCCCTTTGGGEEEECCCGGGTS
T ss_pred             HHHHHHHHhhhcccccccccCchhccCCcEEEEcCCC----HHHHHHHHHHCCe-EEECCCChhhcCCEEEEeCCcCCCC
Confidence            99999999988777766542  2   23556777653    4578888887874 4443322  2356899963334556


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q psy3048         334 QCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~~  353 (367)
                      ++||++++++|+.+.+.+++
T Consensus       362 ~e~i~~l~~~l~~i~~~L~~  381 (382)
T d2bkwa1         362 NKNLPYMKNCFDLIKLALQR  381 (382)
T ss_dssp             STTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHCc
Confidence            88999999999888777664

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.83  E-value=2.8e-20  Score=174.64  Aligned_cols=274  Identities=15%  Similarity=0.031  Sum_probs=171.7

Q ss_pred             EecCCcchhHHH--HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhh
Q psy3048          34 YASDQSNSSVEK--SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE  111 (367)
Q Consensus        34 ~~s~~~H~s~~~--~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~  111 (367)
                      ++....|.+...  .+...+.....+....+...+.+..+....+..     +.++++++.+|.+|.+.|+++|.++||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~tg~~~~i~~i~~~~~~  171 (377)
T d1vjoa_          97 LIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHR-----PAILALVHAETSTGARQPLEGVGELCRE  171 (377)
T ss_dssp             EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred             ceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhcCc-----ceeeeeeeeeccceeeechhhhhhhhhh
Confidence            333445554322  223345555666655555566666665554432     2488889999999999999999999999


Q ss_pred             cCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCC
Q psy3048         112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       112 ~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                      +|+.+++|++|+.+.+..+...   .   .+|++++++|||+++|+|+|+++.+... ++.......+....        
T Consensus       172 ~g~~~~vDa~~~~g~~~~~~~~---~---~~d~~~~s~~K~~~gp~g~~~~~~~~~~-~~~~~~~~~~~~~~--------  236 (377)
T d1vjoa_         172 FGTLLLVDTVTSLGGVPIFLDA---W---GVDLAYSCSQKGLGCSPGASPFTMSSRA-IEKLQRRRTKVANW--------  236 (377)
T ss_dssp             HTCEEEEECTTTTTTSCCCTTT---T---TCSEEECCSSSTTCSCSSCEEEEECHHH-HHHHHTCSSCCSCS--------
T ss_pred             ccceEEEecchhhhhhhhcccc---c---ccceeeecccccccCCCEEEEecchhhH-HhhhhccCCCCcce--------
Confidence            9999999999988776554211   1   4599999999999999999998886543 32221111111000        


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVE  270 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~  270 (367)
                      ...+  ..+...       ...           .........+ ....+..+.......|.+.+.++..++.+++.+.+.
T Consensus       237 ~~~~--~~~~~~-------~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~  296 (377)
T d1vjoa_         237 YLDM--NLLGKY-------WGS-----------ERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLE  296 (377)
T ss_dssp             TTCH--HHHHHH-------HST-----------TCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecc--chhhhc-------cCc-----------ccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhh
Confidence            0000  000000       000           0000011111 113334455556777899999999999999999998


Q ss_pred             CCCCeEEeCCC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         271 KDDRFELVCPP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       271 ~~~g~~~~~~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      +. ++.++.++   ..++++|.+++ +....++.+.|.++..+.+..+.. .+...+||+....++++||||+++++|++
T Consensus       297 ~~-~~~~~~~~~~rs~~v~~~~~p~-~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~  374 (377)
T d1vjoa_         297 DI-GLSLHVEKEYRLPTLTTVCIPD-GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ  374 (377)
T ss_dssp             HT-TCCBSSCGGGBCSSEEEEECCT-TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             cc-CceeecChHhcCCeEEEEECCC-CCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence            86 66655443   33566787754 344678888887664454433221 13358999754567889999999999999


Q ss_pred             HHH
Q psy3048         347 QSS  349 (367)
Q Consensus       347 ~~~  349 (367)
                      +++
T Consensus       375 ~l~  377 (377)
T d1vjoa_         375 VLR  377 (377)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            863

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.83  E-value=1.3e-19  Score=170.89  Aligned_cols=285  Identities=13%  Similarity=0.061  Sum_probs=180.0

Q ss_pred             EEEecCCcchhHHH--HHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          32 VAYASDQSNSSVEK--SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        32 ~v~~s~~~H~s~~~--~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      .+++....|++...  .+...+..++.+...++...+.+.++++.....     +.++++++.+|.+|...|+++|+++|
T Consensus        94 ~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~t~tG~~~~~~~i~~~~  168 (388)
T d2ch1a1          94 RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQ-----PKCLFLTHGDSSSGLLQPLEGVGQIC  168 (388)
T ss_dssp             EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHH
T ss_pred             cccccccccccccchhhhhhhcccccccccccccccchhhhhhhhccCC-----cceeeeeecccccccccchhhhcchh
Confidence            34444566666433  344567778888877777788888888765443     35889999999999999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      |++|++++||++++.+..+.+..+   .   .+|++++++|||+.+|+|+|+++++... ++.......+...       
T Consensus       169 ~~~~~~~~vD~~ss~g~~pid~~~---~---~~d~~~~s~~K~~~gp~G~g~~~~~~~~-~~~~~~~~~~~~~-------  234 (388)
T d2ch1a1         169 HQHDCLLIVDAVASLCGVPFYMDK---W---EIDAVYTGAQKVLGAPPGITPISISPKA-LDVIRNRRTKSKV-------  234 (388)
T ss_dssp             HHTTCEEEEECTTTBTTBCCCTTT---T---TCCEEECCCC-CCCCCSSCEEEEECHHH-HHHHHTCSSCCSC-------
T ss_pred             ccccceeeeeeeecccccccchhc---c---CceEEEEccccccCCCCeEEEEeccHHH-HHhhhcccCcccc-------
Confidence            999999999999998877665322   1   3599999999999999999999997543 3222111100000       


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                       ...++  ..+...        .......+      .............+..+++.+...+.....++......+....+
T Consensus       235 -~~~~~--~~~~~~--------~~~~~~~~------~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (388)
T d2ch1a1         235 -FYWDL--LLLGNY--------WGCYDEPK------RYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGL  297 (388)
T ss_dssp             -GGGCH--HHHHHH--------TTCSSSCC------CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             -ccccc--hhhhhh--------hccccccc------ccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence             00000  000000        00000000      00000111122445556666667788888888888888877777


Q ss_pred             cCCCCeEEeC-CC--C-ceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHH
Q psy3048         270 EKDDRFELVC-PP--S-MGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFAWNEI  344 (367)
Q Consensus       270 ~~~~g~~~~~-~~--~-~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l  344 (367)
                      ... ++.++. ++  . .++++|+++. +....++.+.|.+++.+.+..+.. .....+||+....++++|||++++++|
T Consensus       298 ~~~-~~~~~~~~~~~rs~~v~~~~~p~-g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~al  375 (388)
T d2ch1a1         298 GKM-GLDIFVKDPRHRLPTVTGIMIPK-GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGF  375 (388)
T ss_dssp             HHH-TCCBSSCSGGGBCTTEEEEECCT-TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred             hhc-ccccccCCHHHhCCeEEEEECCC-CCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHH
Confidence            664 333332 22  2 3567888864 333568888887764344433221 123489997434577899999999999


Q ss_pred             HHHHHHhhCC
Q psy3048         345 SHQSSEMNLP  354 (367)
Q Consensus       345 ~~~~~~~~~~  354 (367)
                      +++++.+...
T Consensus       376 ke~L~~~~~~  385 (388)
T d2ch1a1         376 KESLKATHPD  385 (388)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHhhCCc
Confidence            9999986543

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.1e-19  Score=168.27  Aligned_cols=257  Identities=15%  Similarity=0.081  Sum_probs=180.6

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.-.|+++...|.++..+++..+.+++.++.+     |+++|++.+.+..+.   ..+|++....++.|.+.|+++|.++
T Consensus       121 ~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~~~---~~~vv~e~v~s~~G~i~pl~~l~~l  192 (383)
T d1bs0a_         121 KEDRIAADRLSHASLLEAASLSPSQLRRFAHN-----DVTHLARLLASPCPG---QQMVVTEGVFSMDGDSAPLAEIQQV  192 (383)
T ss_dssp             TTCEEEEETTCCHHHHHHHHTSSSEEEEECTT-----CHHHHHHHHHSCCSS---CEEEEEESBCTTTCCBCCHHHHHHH
T ss_pred             CCceEEeeccccHHHhhccccCCCcceEecch-----HHHHHHHHhcccCCC---ceEEEecCCCCCCCcccchhHHHHH
Confidence            45778899999999999999999999988875     999999999765432   3578888889999999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhh-hhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~-~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      |++||++++||+||+.+.+...-. .....++ ..|++..+.-|.++.+  .|++.. ............++|++.... 
T Consensus       193 ~~~~~~~livDeah~~gv~G~~g~G~~~~~~~-~~~~~~~t~~ka~g~~--Gg~v~~-~~~~~~~l~~~~~~~~~s~~~-  267 (383)
T d1bs0a_         193 TQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV-KPELLVVTFGKGFGVS--GAAVLC-SSTVADYLLQFARHLIYSTSM-  267 (383)
T ss_dssp             HHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC-CCSEEEEESSSTTSSC--CEEEEE-CHHHHHHHHHHCHHHHSSBCC-
T ss_pred             HHhcCcEEEeecceeeeecCCcccchHHHcCC-cccccccccccccccc--cccccc-chhHHHHHHhhchhhhhcccc-
Confidence            999999999999999876543210 0111222 3366777777887754  333333 333333222334444433321 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                                                                 ++ ..+.++..+++.+.....+.+.++..++..++.+
T Consensus       268 -------------------------------------------~p-~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~  303 (383)
T d1bs0a_         268 -------------------------------------------PP-AQAQALRASLAVIRSDEGDARREKLAALITRFRA  303 (383)
T ss_dssp             -------------------------------------------CH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------cc-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                                                       00 1122334455555555667788889999999999


Q ss_pred             HhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEE----EeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         268 LVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYII----KASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~----~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      .|.++ |+.+.. ..++++.+.+.+ +..+.++.++|.++|+ ++.    |+...+...+|+++ +..+|++|||+++++
T Consensus       304 ~l~~~-g~~~~~-~~s~Ii~v~~g~-~~~a~~~~~~L~~~Gi-~v~~~~~PtVp~g~~~lRi~~-~a~ht~edid~l~~~  378 (383)
T d1bs0a_         304 GVQDL-PFTLAD-SCSAIQPLIVGD-NSRALQLAEKLRQQGC-WVTAIRPPTVPAGTARLRLTL-TAAHEMQDIDRLLEV  378 (383)
T ss_dssp             HHTTS-SCEECS-CCSSBCCEEEES-HHHHHHHHHHHHHTTE-ECCEECTTSSCTTCEEECCBC-CTTCCHHHHHHHHHH
T ss_pred             HHHhc-CCccCC-CCCCEEEEEECC-HHHHHHHHHHHHHCCc-eEEEEcCCCCCCCCceEEEEe-CCCCCHHHHHHHHHH
Confidence            99997 777653 345666555544 4556789999999985 433    23446778899965 677889999999999


Q ss_pred             HHHH
Q psy3048         344 ISHQ  347 (367)
Q Consensus       344 l~~~  347 (367)
                      |+.+
T Consensus       379 L~~~  382 (383)
T d1bs0a_         379 LHGN  382 (383)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.81  E-value=3.9e-19  Score=171.78  Aligned_cols=281  Identities=11%  Similarity=-0.002  Sum_probs=169.0

Q ss_pred             CceEEEecCCcchhHHHHHHhC-CcceEEE--ecCCCC--------CcCHHHHHHHHHH---HhhCCCccEEEEEecCCC
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIG-DVPVRQL--RSDDNG--------VLRGDALLTAVKE---DLAKGLIPCCLVATLGTT   94 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~-g~~v~~v--~~~~~~--------~~d~~~L~~~l~~---~~~~~~~~~~vv~~~~~t   94 (367)
                      +.-.|++++.+|.|+..++... +..++++  +.++.+        .++.+.+++.+.+   .......+..+++.+.+|
T Consensus       105 ~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~  184 (462)
T d1c4ka2         105 NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT  184 (462)
T ss_dssp             TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC
T ss_pred             CCCeEEecccchHHHHHHHHHHhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeee
Confidence            4568889999999999877654 4444443  334332        3344444433221   111233345666677789


Q ss_pred             cccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhC--C-----CCCcceeeeccccccccCCcceeEEEecc
Q psy3048          95 GTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--G-----LEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus        95 ~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~--~-----~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                      +.|.+.|+++|+++||+||+++|||+||+++..+.+.......  +     ...+|+++++.||+++++.|++++..++.
T Consensus       185 ~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~  264 (462)
T d1c4ka2         185 YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDS  264 (462)
T ss_dssp             TTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECG
T ss_pred             eccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccc
Confidence            9999999999999999999999999999998877665433211  1     12359999999999998888777776653


Q ss_pred             hhhhhhcc-CCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh
Q psy3048         168 NHLTNTFF-TDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY  246 (367)
Q Consensus       168 ~~~~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (367)
                      . +..... .....+....                                      ..++...........+-++...+
T Consensus       265 ~-~~~~~~~~~~~~~~~~~--------------------------------------~~~~t~sp~~~~~asl~~a~~~~  305 (462)
T d1c4ka2         265 H-IKGQLRYCDHKHFNNSF--------------------------------------NLFMSTSPFYPMYAALDVNAAMQ  305 (462)
T ss_dssp             G-GTTSTTCCCHHHHHHHH--------------------------------------HHHSCSSCCHHHHHHHHHHHHHH
T ss_pred             c-ccccchhhhHHHHHHhh--------------------------------------hhcccCCchHHHHHHHHHHHHHH
Confidence            2 211100 0000000000                                      00000001111123334444555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC-CC-------------------------------------------C
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDRFELVC-PP-------------------------------------------S  282 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~-~~-------------------------------------------~  282 (367)
                      ..+..+++.++..++++++++++.+++++.... ++                                           .
T Consensus       306 ~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  385 (462)
T d1c4ka2         306 EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVD  385 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEEC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCccceecc
Confidence            566667788889999999999998876532211 00                                           0


Q ss_pred             ceeEEEEEcCC----------chHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         283 MGLVCFRLKGD----------NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       283 ~~~v~f~~~~~----------~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ..-+.+..++.          .....++.+.|.+.|+ .+.   ..+...+|++ .++++|++|||+++++|+++.+...
T Consensus       386 p~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI-~~e---~~~~~~i~~~-~s~~~T~edid~li~aL~ei~r~~~  460 (462)
T d1c4ka2         386 PNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGI-IPE---KSDLNSILFL-MTPAETPAKMNNLITQLLQLQRLIE  460 (462)
T ss_dssp             TTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTC-CCS---EECSSEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEecCCccccccchhhcCCcHHHHHHHHHHcCC-eee---ccCCCeEEEE-ecCCCCHHHHHHHHHHHHHHHHHHh
Confidence            00123332211          1123567777777774 221   1244579995 5789999999999999999988765


Q ss_pred             C
Q psy3048         353 L  353 (367)
Q Consensus       353 ~  353 (367)
                      .
T Consensus       461 ~  461 (462)
T d1c4ka2         461 E  461 (462)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.1e-17  Score=153.53  Aligned_cols=265  Identities=14%  Similarity=0.009  Sum_probs=166.5

Q ss_pred             EEecCCcchh--HHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHh
Q psy3048          33 AYASDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQ  110 (367)
Q Consensus        33 v~~s~~~H~s--~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~  110 (367)
                      |++..+++++  +.+.++..|.++..++.+.+...++++++         ...+..|+++|.+|++|.+.|+++|+++||
T Consensus        77 vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~---------~~~~~~v~~~h~eTstG~~~~i~~i~~~~~  147 (348)
T d1iuga_          77 VLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVA---------KEGYAGLLLVHSETSTGALADLPALARAFK  147 (348)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSC---------CSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             ceeecchHHHHHHHHHHHhcCcccccccccCCCcccccccc---------ccCCCeeEEEecchhhhhhccHHHHHHHHH
Confidence            3444456666  44445567777777776554444543321         122458899999999999999999999999


Q ss_pred             hcC--cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         111 EYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       111 ~~g--i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      +++  .++++|+.++.+..+.+...   .++   |++++++|||+++|+|+|+++++++ .+++. .....|+.      
T Consensus       148 ~~~~~~l~~vDavss~g~~~i~~d~---~~i---D~~~~~sqK~l~gppG~~~v~~s~~-~le~~-~~~~~~~d------  213 (348)
T d1iuga_         148 EKNPEGLVGADMVTSLLVGEVALEA---MGV---DAAASGSQKGLMCPPGLGFVALSPR-ALERL-KPRGYYLD------  213 (348)
T ss_dssp             HHCTTCEEEEECTTTBTTBCCCSGG---GTC---SEEEEESSSTTCCCSCEEEEEECHH-HHHTC-CCCSSTTC------
T ss_pred             hhhccceeechhhhccccccccccc---ccC---CEEEeccccceecCCceeeeeechH-HHhhh-cccccccc------
Confidence            985  78999998877665443221   234   9999999999999999999999754 34332 11112211      


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                            +  ..|...        .+.+.       ..++.   +-...+++..+|+.+..++. +..++.....+.++..
T Consensus       214 ------l--~~~~~~--------~~~~~-------~~~Tp---~v~~i~~l~~aL~~~~~~~~-~~~~~~~~~~~~~~~~  266 (348)
T d1iuga_         214 ------L--ARELKA--------QKEGE-------SAWTP---AINLVLAVAAVLEEVLPRLE-EHLALKAWQNALLYGV  266 (348)
T ss_dssp             ------H--HHHHHH--------HTTTC-------CSSCC---CHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHH
T ss_pred             ------h--hhhhhh--------hccCc-------ccccc---cchHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhh
Confidence                  1  111110        00000       11111   11223566677776655553 3344444445555555


Q ss_pred             hcCCCCeEEeCCCCc-eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-CeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         269 VEKDDRFELVCPPSM-GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-GRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       269 L~~~~g~~~~~~~~~-~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      +... |+++.....+ .+++|+++. +....++.+.|.++|. .+.++... ....+||+ +..+++.+|+++++++|++
T Consensus       267 ~~~~-gl~~~~~~~s~~v~~~~~P~-g~~~~~~~~~l~~~gi-~i~~G~~~l~~~~~RIg-~mG~~~~~d~~~~~~~l~~  342 (348)
T d1iuga_         267 GEEG-GLRPVPKRFSPAVAAFYLPE-GVPYARVKEAFAQRGA-VIAGGQGPLKGKVFRLS-LMGAYDRYEALGVAGMFRE  342 (348)
T ss_dssp             HHHT-TCEESCSSBCTTCEEEECCT-TCCHHHHHHHHHTTTE-ECEECCGGGTTTEEEEC-CCSSCCHHHHHHHHHHHHH
T ss_pred             hhhh-hhccChhhcCCeEEEEECCC-CCCHHHHHHHHHHCCe-EEEcCccccCCCEEEEe-CCCCCCHHHHHHHHHHHHH
Confidence            5554 8887654333 467888864 3345788888988884 44433211 12489995 5678899999999999999


Q ss_pred             HHHHh
Q psy3048         347 QSSEM  351 (367)
Q Consensus       347 ~~~~~  351 (367)
                      +++++
T Consensus       343 ~l~~~  347 (348)
T d1iuga_         343 VLEEI  347 (348)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=6.2e-17  Score=153.15  Aligned_cols=272  Identities=14%  Similarity=0.079  Sum_probs=169.7

Q ss_pred             EEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          33 AYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        33 v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      ++++...|.+.+..    +...|.+++.++.++++..+ ++    +++++      ..|++++|++ .|.++|+++|.++
T Consensus       153 ~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~~-~~----~~~~~------Aavmi~~Pnt-~G~~ed~~~i~~~  220 (437)
T d1wyua1         153 VLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPL-PE----VGEEV------GAVVVQNPNF-LGALEDLGPFAEA  220 (437)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCC-CC----CCTTE------EEEEEESSCT-TSBCCCHHHHHHH
T ss_pred             cccccccChHHhhhhhhhcccceeeEEeeecccccchh-hh----hccce------eEEEEccccc-cccccchHHHHHH
Confidence            56688889886554    44579999999986544332 22    33444      5788888865 8999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCC-----cceeEEEecchhhhhhccCCcccccc
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNH-----DCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +|+.|..+++|+..-+.....++...   |.   |+++.+ ||-|+.|.     +.|++.+++.  +.+.+   |+.+-.
T Consensus       221 ~h~~G~l~~~~ad~~al~~l~~Pg~~---Ga---Di~~g~-~q~fg~p~g~GGP~~G~~a~~~~--l~r~l---Pgrivg  288 (437)
T d1wyua1         221 AHGAGALFVAVADPLSLGVLKPPGAY---GA---DIAVGD-GQSLGLPMGFGGPHFGFLATKKA--FVRQL---PGRLVS  288 (437)
T ss_dssp             HHHTTCEEEEECCTTGGGTBCCHHHH---TC---SEEEEE-CTTTTCCCGGGCSCCEEEEECGG--GGGGC---CSCCEE
T ss_pred             hhhccceEEeeechhhhhcccccccc---cc---ceEeec-cceeccccCCCcCccccccccch--hhccc---cccccc
Confidence            99999998888754332232222222   44   999999 66555554     4588888643  22211   222211


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-ccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-FRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...+. .....|.+.      +.+++......        +.....++.. ..++..++++..+|.+|++++.++...++
T Consensus       289 ~s~d~-~G~~~~~l~------lqtreqhIrRe--------katsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A  353 (437)
T d1wyua1         289 ETVDV-EGRRGFILT------LQAREQYIRRA--------KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMA  353 (437)
T ss_dssp             EEEBT-TSCEEEEEC------CGGGSHHHHGG--------GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccc-CCcccceee------ccccccccccc--------ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHH
Confidence            10000 011111000      00011000000        0001111111 23456677888899999999999999999


Q ss_pred             HHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEE-eEECCeeEEEEEecCCCCCHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIK-ASFQGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      +|+.++|.+++|++++.+ +.+..+.+.+..   ...++.++|.+.|...... ..+.+...+.+++ .-..|++|||+|
T Consensus       354 ~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~---~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~-TE~~tkeeiD~~  429 (437)
T d1wyua1         354 HKLHALLLEVPGVRPFTPKPFFNEFALALPK---DPEAVRRALAERGFHGATPVPREYGENLALFAA-TELHEEEDLLAL  429 (437)
T ss_dssp             HHHHHHHTTSTTCEECSCSSBCSEEEEECSS---CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEEC-CTTCCHHHHHHH
T ss_pred             HHHHHHhhhcCCeeccCCCCeeeEEEEECCC---CHHHHHHHHHhCCCCCCcccccCCCCCeEEEec-CCCCCHHHHHHH
Confidence            999999999999997654 466777766543   3678999999999532111 1112345788866 466789999999


Q ss_pred             HHHHHHH
Q psy3048         341 WNEISHQ  347 (367)
Q Consensus       341 i~~l~~~  347 (367)
                      +++|+++
T Consensus       430 v~al~ei  436 (437)
T d1wyua1         430 REALKEV  436 (437)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.75  E-value=5.8e-18  Score=159.81  Aligned_cols=262  Identities=8%  Similarity=0.001  Sum_probs=173.2

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++..+...++..|.+++.++.+  +++.+|+++|++++++.+      .++++++++||||.+   +.+++
T Consensus       114 gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~------~~~~~~~P~NPTG~~~~~~~~~~  187 (388)
T d1j32a_         114 GDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT------KLLVFNTPSNPTGMVYTPDEVRA  187 (388)
T ss_dssp             TCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCC------eEEEECCCCCCCCcccchhhhhh
Confidence            3466777889999999999999999888875  457899999999987655      478899999999998   45788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCC---CcceeeeccccccccC-CcceeEEEecchhhhhhccCCccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~---~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      |+++|+++|+++++|++|+...+..+..........   .-.++..+..|.++.| ..+|+++... ..+...... ..+
T Consensus       188 l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~-~~~~~~~~~-~~~  265 (388)
T d1j32a_         188 IAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPV-PLVKAATKI-QGH  265 (388)
T ss_dssp             HHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCH-HHHHHHHHH-HHT
T ss_pred             hhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECH-HHHHHHHHh-hhh
Confidence            888899999999999999765553222111100000   1146777889998754 6688877643 323221100 000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hhHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YGLKGLQAYLRKH  258 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~g~~~~~~~~  258 (367)
                      ...                                              ..   ......++...  .+.+.+++..++.
T Consensus       266 ~~~----------------------------------------------~~---~~~~q~a~~~~~~~~~~~~~~~~~~~  296 (388)
T d1j32a_         266 STS----------------------------------------------NV---CTFAQYGAIAAYENSQDCVQEMLAAF  296 (388)
T ss_dssp             TTC----------------------------------------------SC---CHHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred             ccc----------------------------------------------cc---cHHHHHHHhhcccchHHHHHHHHHHH
Confidence            000                                              00   01122222222  2456678888888


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEECCeeEEEEEecCCCCCHHHH
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASFQGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+..+++.+.|++++|+++..|.....++.+++.......++.++|.++ |+....+..+..++++|++++   ++++++
T Consensus       297 ~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~---~~~e~l  373 (388)
T d1j32a_         297 AERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTI  373 (388)
T ss_dssp             HHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe---CCHHHH
Confidence            8999999999999988887654433444445543222345777777655 643333344445679999764   478999


Q ss_pred             HHHHHHHHHHHHHh
Q psy3048         338 AFAWNEISHQSSEM  351 (367)
Q Consensus       338 d~li~~l~~~~~~~  351 (367)
                      +..++.|+++++.+
T Consensus       374 ~~al~rl~~~l~~l  387 (388)
T d1j32a_         374 KRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998875

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.74  E-value=8.8e-18  Score=157.49  Aligned_cols=276  Identities=12%  Similarity=0.042  Sum_probs=175.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.-.|+++..+|.+...++...|+++++++++. ++.+|+++|++++.+.|+      +|+++   +..|...|+++|.+
T Consensus        70 ~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tk------aIi~~---h~~G~~~~~~~i~~  140 (376)
T d1mdoa_          70 EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTK------AIIPV---HYAGAPADLDAIYA  140 (376)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEE------EECCB---CGGGCCCCHHHHHH
T ss_pred             CCCEEEEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCCCe------EEEEe---CCCCCccchhHHHH
Confidence            445788889999999999999999999999974 689999999999987763      56555   36899999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +|++||+++++|+||+.+....+..    .|.....+++++++|.+.++ +.|++++.+.....+.............. 
T Consensus       141 i~~~~~i~vIeD~a~a~g~~~~~~~----~g~~g~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~-  214 (376)
T d1mdoa_         141 LGERYGIPVIEDAAHATGTSYKGRH----IGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW-  214 (376)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEE----TTSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred             HHHhcCceEEeccchhccCeeCCee----cccccCccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCccccc-
Confidence            9999999999999998765432211    12222367778889999764 45777777665443331111000000000 


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                        .....+     ..     .               .......+..+.+..+.+++...+...++++.++.+++++++.+
T Consensus       215 --~~~~~~-----~~-----~---------------~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~  267 (376)
T d1mdoa_         215 --DRQSGG-----RA-----P---------------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQ  267 (376)
T ss_dssp             ------------------------------------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             --cccccc-----cc-----c---------------cccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhhhh
Confidence              000000     00     0               00001111223333445555555567788899999999999999


Q ss_pred             HhcCCCCeEEeCCCC-----ceeEEEEEcCC--chHHHHHHHHHhccCcEEEEEeE------------E-CC--------
Q psy3048         268 LVEKDDRFELVCPPS-----MGLVCFRLKGD--NDLTNQLYERLMSHKQIYIIKAS------------F-QG--------  319 (367)
Q Consensus       268 ~L~~~~g~~~~~~~~-----~~~v~f~~~~~--~~~~~~l~~~L~~~g~~~~~~~~------------~-~~--------  319 (367)
                      .|+++++..+...+.     .....+.+...  ....+++.+.|.++|+- +....            . .+        
T Consensus       268 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~-~~~~y~~~~~~~~~~~~~~~~~~p~a~~~  346 (376)
T d1mdoa_         268 AMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIG-TGLHFRAAHTQKYYRERFPTLTLPDTEWN  346 (376)
T ss_dssp             HHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBC-CBCCCCCGGGSHHHHHHSTTCCCHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCC-eeeECcchhcCHHHHhhCCCCCCHHHHHH
Confidence            999987665543321     12222222110  01124788899888842 21000            0 00        


Q ss_pred             -eeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         320 -RPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       320 -~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                       ...+.+ ++++..+++||+++++.|++++
T Consensus       347 ~~~~i~L-P~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         347 SERICSL-PLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HTTEEEE-CCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HhCEEEc-cCCCCCCHHHHHHHHHHHHHHh
Confidence             234777 6788889999999999999874

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.8e-17  Score=154.81  Aligned_cols=264  Identities=12%  Similarity=0.052  Sum_probs=166.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.+|..+...++..|++++.++++  +++.+|+++|++++++.+      .++++++++||||.+   +++++
T Consensus       110 gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~P~NPtG~~~s~~~~~~  183 (388)
T d1gdea_         110 GEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT------RALIINSPCNPTGAVLTKKDLEE  183 (388)
T ss_dssp             TCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccCC------eEEEECCCcCCCCCcCCHHHHHH
Confidence            3456667789999999999999999999985  467999999999887654      478899999999999   46788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeecccccccc-CCcceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      |+++|++||+++++|++|+...+........  +.+...-.++..+..|.++. +..+|+++..+. .+.....    ..
T Consensus       184 l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~-~~~~~~~----~~  258 (388)
T d1gdea_         184 IADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVK----FQ  258 (388)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHH----HH
T ss_pred             HHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeecc-chhhhhh----cc
Confidence            9999999999999999998654432211111  11111124667788998874 478998887543 2221110    00


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHIS  260 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~  260 (367)
                      .....                                           ............++... ..+.+.+..++..+
T Consensus       259 ~~~~~-------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  295 (388)
T d1gdea_         259 MYNAT-------------------------------------------CPVTFIQYAAAKALKDERSWKAVEEMRKEYDR  295 (388)
T ss_dssp             HTTTC-------------------------------------------SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccccc-------------------------------------------cccccchhhHHHHHhhccchhHHHHHHHHHHH
Confidence            00000                                           00000111111222110 12234455555666


Q ss_pred             HHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHHH
Q psy3048         261 LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       261 la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~edi  337 (367)
                      ....+.+.|... +++...|.....+++++++......+++++|.++..+.+.|+..   .+++++|++++   ++++++
T Consensus       296 ~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~---~~~e~l  371 (388)
T d1gdea_         296 RRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA---TAYEKL  371 (388)
T ss_dssp             HHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC---SCHHHH
T ss_pred             hhhhhhhhhhhc-cccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec---CCHHHH
Confidence            777777887775 55544444444555555432234568888876654355554432   23568999764   368999


Q ss_pred             HHHHHHHHHHHHHh
Q psy3048         338 AFAWNEISHQSSEM  351 (367)
Q Consensus       338 d~li~~l~~~~~~~  351 (367)
                      +.++++|++++++.
T Consensus       372 ~~al~rL~~~l~e~  385 (388)
T d1gdea_         372 EEAMDRMERVLKER  385 (388)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998874

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=6.3e-17  Score=152.21  Aligned_cols=258  Identities=11%  Similarity=-0.016  Sum_probs=163.8

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++.+..+..+...++..|++++.++.+  +++.+|++++++++++.+      .+++++.++||||.+   +.+++|
T Consensus       116 d~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~P~NPTG~~~s~~~~~~l  189 (382)
T d1b5pa_         116 DEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRT------KALVVNSPNNPTGAVYPKEVLEAL  189 (382)
T ss_dssp             CEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCCC------eEEEECCCCCCcchhCCHHHHHHH
Confidence            356667788889989999999999999875  457899999999886654      478889999999998   567889


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++|++||++++.|++|+...+......... ....-.++..+..|.++.| ..+|+++..+ +.++...... .   ..
T Consensus       190 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~-~~i~~~~~~~-~---~~  263 (382)
T d1b5pa_         190 ARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR-VAPEHTLTVNGAAKAFAMTGWRIGYACGPK-EVIKAMASVS-R---QS  263 (382)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBSSSCCCCGGG-TCTTTEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHH-H---TT
T ss_pred             HHHHHHcCeEEEEEccccceecCCCCCCHHH-cCCCCEEEEecchhhccCcHhheEEEEECH-HHHHHHHHHH-H---hc
Confidence            9999999999999999986555332221111 1112246667789998744 7789987643 3332211000 0   00


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH--hhHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS--YGLKGLQAYLRKHISLA  262 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~g~~~~~~~~~~la  262 (367)
                      .     ..                                      ............+..  .....+....+...+..
T Consensus       264 ~-----~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T d1b5pa_         264 T-----TS--------------------------------------PDTIAQWATLEALTNQEASRAFVEMAREAYRRRR  300 (382)
T ss_dssp             T-----CS--------------------------------------CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             c-----cC--------------------------------------cccccccccccccccccchhHHHHHHHHHHHhhh
Confidence            0     00                                      000001111111111  11223344444555666


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWN  342 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~  342 (367)
                      +.+.+.+... |+++..|.....+++++.+.......+.+.|.++|+....+..+.+.+++|+++.   +++++++..++
T Consensus       301 ~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~---~~~e~l~~al~  376 (382)
T d1b5pa_         301 DLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALE  376 (382)
T ss_dssp             HHHHHHHHHH-TCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHH
T ss_pred             hHHHHHHhhc-CCeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc---CCHHHHHHHHH
Confidence            6777777765 6776545455556667754333456788888888865444444455679999763   36888988888


Q ss_pred             HHHHH
Q psy3048         343 EISHQ  347 (367)
Q Consensus       343 ~l~~~  347 (367)
                      +|.++
T Consensus       377 rl~~~  381 (382)
T d1b5pa_         377 RFARV  381 (382)
T ss_dssp             HGGGG
T ss_pred             HHHHh
Confidence            88764

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.69  E-value=2.5e-16  Score=150.29  Aligned_cols=268  Identities=12%  Similarity=0.059  Sum_probs=169.1

Q ss_pred             eEEEecCCcchhHHHHHHh-CCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhh
Q psy3048          31 LVAYASDQSNSSVEKSAII-GDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~-~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~  104 (367)
                      -.|++++..|.++...+.. .|++++.++++  +++.+|+++++++++...+.+..+.+++++.++|+||.+-+   +++
T Consensus       133 d~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~  212 (428)
T d1iaya_         133 DAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKS  212 (428)
T ss_dssp             CEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             CEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccch
Confidence            4566677889888887765 58999999886  46899999999998877666666778999999999999854   788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh---hhC----CC--CCcceeeeccccccccC-CcceeEEEecchhhhhhc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH---LKR----GL--EYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTF  174 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~---~~~----~~--~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~  174 (367)
                      |+++|++||+++++|++|+...+..+.+..   ...    ..  ..-.++..+..|.+..| ..+|+++..++.... ..
T Consensus       213 i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~-~~  291 (428)
T d1iaya_         213 VLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN-CA  291 (428)
T ss_dssp             HHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH-HH
T ss_pred             hheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhh-hh
Confidence            999999999999999999865543221100   000    00  01135677889977644 678888775543322 11


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH--HHhhHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL--RSYGLKGLQ  252 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~g~~  252 (367)
                      .....+.  .        .                                    .+  .....+.+.+  .....+.++
T Consensus       292 ~~~~~~~--~--------~------------------------------------~~--~~~~~~~a~l~~~~~~~~~~~  323 (428)
T d1iaya_         292 RKMSSFG--L--------V------------------------------------ST--QTQYFLAAMLSDEKFVDNFLR  323 (428)
T ss_dssp             HHHHTTS--C--------C------------------------------------CH--HHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhccc--c--------c------------------------------------cc--ccccchhhhhhhhcccccccc
Confidence            0000000  0        0                                    00  0001111111  111123345


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-----chHHHHHHHHHhccCcEEEEEeEE---CCeeEEE
Q psy3048         253 AYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-----NDLTNQLYERLMSHKQIYIIKASF---QGRPFLR  324 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lR  324 (367)
                      +..++..+..+.+.+.|+.. |+++..+.....++++++..     .....++.++|.++..+.+.|+..   .+++++|
T Consensus       324 ~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~R  402 (428)
T d1iaya_         324 ESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFR  402 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEE
T ss_pred             ccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEE
Confidence            55666677778888888764 88876554444556666431     112346788887664455555432   3578999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         325 FVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       325 i~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +++.  ..++++++..+++|++++..
T Consensus       403 is~a--~~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         403 VCFA--NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             EECS--SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEeC--CCCHHHHHHHHHHHHHHHhh
Confidence            9763  34678899999999988753

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.69  E-value=7.8e-16  Score=146.98  Aligned_cols=268  Identities=12%  Similarity=0.080  Sum_probs=171.3

Q ss_pred             EEEecCCcchhHHHHHHh-CCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          32 VAYASDQSNSSVEKSAII-GDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~-~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .|++.+..|..+...+.. .|++++.++++  +++.+|++.+++++++..+.+....+++++.++|+||.+-   .+++|
T Consensus       135 ~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i  214 (431)
T d1m7ya_         135 AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLL  214 (431)
T ss_dssp             EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             EEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccc
Confidence            456667788888877765 58899999886  3578999999999998877777778899999999999984   58888


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhh---hCCC------C--CcceeeeccccccccC-CcceeEEEecchhhhhh
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHL---KRGL------E--YVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNT  173 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~---~~~~------~--~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~  173 (367)
                      +++|++||+++++|++|+...+..+.+...   ....      .  .--++..+..|.++.| ..+|+++..+.. +...
T Consensus       215 ~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~-i~~~  293 (431)
T d1m7ya_         215 LSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDM-VVAA  293 (431)
T ss_dssp             HHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHH-HHHH
T ss_pred             cccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhh-hHHH
Confidence            999999999999999998755432211100   0000      0  0125666789998754 678888875432 2111


Q ss_pred             ccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH--HhhHHHH
Q psy3048         174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR--SYGLKGL  251 (367)
Q Consensus       174 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~  251 (367)
                      ......+. .                                              .+. .....+.+.+.  ....+.+
T Consensus       294 ~~~~~~~~-~----------------------------------------------~~~-~~~~~~~a~l~~~~~~~~~~  325 (431)
T d1m7ya_         294 ATKMSSFG-L----------------------------------------------VSS-QTQHLLSAMLSDKKLTKNYI  325 (431)
T ss_dssp             HHHHGGGS-C----------------------------------------------CCH-HHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHhccc-c----------------------------------------------ccc-cccchhhhhhccchhhhhhh
Confidence            10000000 0                                              000 00011111111  1123345


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-----chHHHHHHHHHhccCcEEEEEeEE---CCeeEE
Q psy3048         252 QAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-----NDLTNQLYERLMSHKQIYIIKASF---QGRPFL  323 (367)
Q Consensus       252 ~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~l  323 (367)
                      ++..++..+..+.+.+.|++. |+++..+.....++++++..     .....++.++|.++..+.+.|+..   .+++++
T Consensus       326 ~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~  404 (431)
T d1m7ya_         326 AENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWF  404 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEE
T ss_pred             hhhhhhhhhhhhhhhhhhhcC-CcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEE
Confidence            666666777888888889874 89887655444556665431     123347788877654455555422   346799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      |+++.  ..++++++..+++|++++++.
T Consensus       405 Ri~~a--~~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         405 RVCFA--NLPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             EEECS--SSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC--cCCHHHHHHHHHHHHHHHHHh
Confidence            99763  236789999999999988763

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.69  E-value=3.4e-16  Score=148.54  Aligned_cols=270  Identities=12%  Similarity=0.025  Sum_probs=172.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++.+.++......++..|++++.++++  .++..++++|+++..+.+      .+++++.++|+||.+   +.+++
T Consensus       125 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~------~~~~l~np~NPtG~~~~~~~~~~  198 (412)
T d1bw0a_         125 GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT------KLLIVTNPSNPCGSNFSRKHVED  198 (412)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHH
T ss_pred             ccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccc------cccccccccccccccchhhhccc
Confidence            3455667788888889999999999999985  467899999998876655      478889999999998   56788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh---hCCCCCc--ceeeecccccccc-CCcceeEEEecchhhhhhccCCc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL---KRGLEYV--DSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~---~~~~~~~--D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~  178 (367)
                      |+++|++|++++++|++|+...+........   ....+..  -++..+..|.++. +..+|+++..+......      
T Consensus       199 i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~------  272 (412)
T d1bw0a_         199 IVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGP------  272 (412)
T ss_dssp             HHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCH------
T ss_pred             cccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcch------
Confidence            8889999999999999997655432111110   0111111  1334456787664 48899988864321100      


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      ..+.....          +                          ..... .........+...+.....+.+.+..++.
T Consensus       273 ~~~~~~~~----------~--------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (412)
T d1bw0a_         273 SFLEGLKR----------V--------------------------GMLVC-GPCTVVQAALGEALLNTPQEHLDQIVAKI  315 (412)
T ss_dssp             HHHHHHHH----------H--------------------------HHHHT-CSCHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hhhhhhcc----------c--------------------------ccccc-CCchhhhhhcccccccccccccccccchh
Confidence            00000000          0                          00000 00000011112222223455678888888


Q ss_pred             HHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC----chHHHHHHHHHhcc-CcEEEEEeEECCeeEEEEEecCCCCC
Q psy3048         259 ISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLMSH-KQIYIIKASFQGRPFLRFVVTSPETN  333 (367)
Q Consensus       259 ~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~----~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~lRi~~~~~~~~  333 (367)
                      .+.++++.+.|.+.+|+.+..|.....+..+++..    .....+++++|.++ |++.+.++.+.+++++|++++   .+
T Consensus       316 ~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~---~~  392 (412)
T d1bw0a_         316 EESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RP  392 (412)
T ss_dssp             HHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SC
T ss_pred             HHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEc---CC
Confidence            99999999999988899876655545555555421    12356788887765 644443344455679999764   36


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy3048         334 QCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~  351 (367)
                      +++++..++.|++++++.
T Consensus       393 ~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         393 VEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            889999999999988764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=8e-16  Score=143.29  Aligned_cols=266  Identities=13%  Similarity=0.020  Sum_probs=160.9

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---Chhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~  104 (367)
                      -.|++.+..|..+...++..|.+++.++.+   +++.+|++.+++.+.+..     +.++++++++|+||.+-   .+++
T Consensus        83 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~-----~~~i~l~~p~NPTG~~~s~~~~~~  157 (361)
T d1d2fa_          83 EGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPE-----CKIMLLCSPQNPTGKVWTCDELEI  157 (361)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTT-----EEEEEEESSCTTTCCCCCTTHHHH
T ss_pred             cccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCC-----ceeEEecccccccccccchhhhhh
Confidence            356667789999999998999999888774   456799999999885432     35888899999999884   4778


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      |+++|+++|+++++|++|+.+.+..............-.++..+..|.++.| .++|++++...........   . +..
T Consensus       158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~---~-~~~  233 (361)
T d1d2fa_         158 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---A-LKG  233 (361)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---H-HHT
T ss_pred             hhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhh---h-ccc
Confidence            9999999999999999997654432111111111111135666677866543 6788877755432222110   0 000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH--HhhHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR--SYGLKGLQAYLRKHISL  261 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~~~~~~~~~~l  261 (367)
                      ...     .                                     .+.  ....+.+++.  ....+..++......+.
T Consensus       234 ~~~-----~-------------------------------------~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~r  269 (361)
T d1d2fa_         234 RDG-----L-------------------------------------SSP--SVLALTAHIAAYQQGAPWLDALRIYLKDN  269 (361)
T ss_dssp             TSC-----C-------------------------------------CSC--CHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccc-----c-------------------------------------ccc--hhhhHHHHHHHhhccchhhhcccccchhh
Confidence            000     0                                     000  0011111111  12233445555555566


Q ss_pred             HHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE---CCeeEEEEEecCCCCCHHHH
Q psy3048         262 AKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF---QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       262 a~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~lRi~~~~~~~~~edi  337 (367)
                      .+.+.+.+.+ .+++.+..|.....+++++.+......++.++|.++..+.+.|+..   .+++++|+|+.   ++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~---~~~e~l  346 (361)
T d1d2fa_         270 LTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG---CPRSKL  346 (361)
T ss_dssp             HHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHH
T ss_pred             HHHHHHHhhhhcccccccccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc---CCHHHH
Confidence            6666655543 3455554443334455566432334678898887663344544322   24568999763   468999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy3048         338 AFAWNEISHQSSEMN  352 (367)
Q Consensus       338 d~li~~l~~~~~~~~  352 (367)
                      ++.++.|.+++++++
T Consensus       347 ~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         347 EKGVAGLINAIRAVR  361 (361)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=6.4e-16  Score=141.00  Aligned_cols=259  Identities=16%  Similarity=0.096  Sum_probs=161.4

Q ss_pred             ceEEEecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccE-EEEEecCCCcccc---cCCh
Q psy3048          30 RLVAYASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPC-CLVATLGTTGTCA---FDNL  102 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~-~vv~~~~~t~~G~---i~dl  102 (367)
                      .-.+++....|.+.....   ...+..+..++.+.++.++++.+++.+.+.......+. .++.....+..|.   ++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (345)
T d1v72a1          78 WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEI  157 (345)
T ss_dssp             TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred             CCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhh
Confidence            344556777888875543   33567777777667899999999999987654322232 2333333344443   4678


Q ss_pred             hhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC-CCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccc
Q psy3048         103 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       103 ~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~-~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      .++.++|++||+++|+|++++++.............. ...+.++.+.+|.+  +...+.+............   ....
T Consensus       158 ~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~  232 (345)
T d1v72a1         158 EAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNTSLATEMS---YRRK  232 (345)
T ss_dssp             HHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSGGGHHHHH---HHHH
T ss_pred             hhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--cccccccccchhhhhhhcc---cccc
Confidence            8899999999999999999976544322111110011 11244444445444  3334444443322111100   0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ...                                             .+.....................+..++...+
T Consensus       233 ~~~---------------------------------------------~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~  267 (345)
T d1v72a1         233 RAG---------------------------------------------HLSSKMRFLSAQIDAYLTDDLWLRNARKANAA  267 (345)
T ss_dssp             HTT---------------------------------------------CCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             ccc---------------------------------------------cccchhhHHhhhhHHHHHHhhhhhhccchhhH
Confidence            000                                             00001123344455556666777888888899


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAW  341 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li  341 (367)
                      .+++.+.+.+++|+.+..|...+++.++++      .++.++|.++|+.+.  ....++..+|+++ +.++|+||||+++
T Consensus       268 ~~~~~~~l~~~~g~~~~~p~~~niv~~~~~------~~~~~~L~~~gi~v~--~~~~~~~~lR~~~-~~~~T~edid~~l  338 (345)
T d1v72a1         268 AQRLAQGLEGLGGVEVLGGTEANILFCRLD------SAMIDALLKAGFGFY--HDRWGPNVVRFVT-SFATTAEDVDHLL  338 (345)
T ss_dssp             HHHHHHHHTTCTTEEEESCCCSSEEEEEEC------HHHHHHHHHTTCBCB--CSSSSTTEEEEEC-CTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcEeccCCCccEEEEEcC------HHHHHHHHHcCCCcc--ccCCCCCEEEEEC-CCCCCHHHHHHHH
Confidence            999999999999999988888899988774      357788998986432  2223567999965 7899999999999


Q ss_pred             HHHHHH
Q psy3048         342 NEISHQ  347 (367)
Q Consensus       342 ~~l~~~  347 (367)
                      ++|+++
T Consensus       339 e~lr~a  344 (345)
T d1v72a1         339 NQVRLA  344 (345)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999874

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.66  E-value=3.3e-15  Score=140.41  Aligned_cols=272  Identities=14%  Similarity=0.093  Sum_probs=179.7

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.-.|+++..++.+...++...|+++++++.++ ++.+|++.+++.+.+.++      .|++   .+..|...|+++|.+
T Consensus        73 ~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk------~i~~---~~~~g~~~d~~~i~~  143 (384)
T d1b9ha_          73 PGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTK------VIMP---VHMAGLMADMDALAK  143 (384)
T ss_dssp             TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEE------EECC---BCGGGCCCCHHHHHH
T ss_pred             CCCEEEEeccccccccccccccccccccccccccccccchhhhccccccccc------cccc---ccccccccccccchh
Confidence            344678899999999999999999999999874 699999999999877764      4433   467899999999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +|+++|++++.|+||+.+.........   ..+.+.+++++..|.+.++ +.|++++.+++..++..    .+...+...
T Consensus       144 ~~~~~~i~lieD~a~a~ga~~~g~~~g---~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~----~~~~~g~~~  215 (384)
T d1b9ha_         144 ISADTGVPLLQDAAHAHGARWQGKRVG---ELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYET----AFLRHSCGR  215 (384)
T ss_dssp             HHHHHTCCBCEECTTCTTCEETTEEGG---GSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHH----HHHHTBTTC
T ss_pred             hhhhhhhhhhhhhceecccccCCEecC---cccccceeccccccccccc-ccchhhhhhHHHHHHHH----HHHhcCCCC
Confidence            999999999999999876654322211   1334577888899998754 45667777665443321    111111000


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD  267 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~  267 (367)
                       ......|                              +....|..+++-.+.+++...+.+.++++.++.+++++++.+
T Consensus       216 -~~~~~~~------------------------------~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~  264 (384)
T d1b9ha_         216 -PRDDRRY------------------------------FHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSR  264 (384)
T ss_dssp             -CTTCSSC------------------------------CCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             -ccccccc------------------------------cccccccccccccchhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence             0001111                              000112223333445555555567788999999999999999


Q ss_pred             HhcCCCCeEEeCCC------CceeEEEEEcCCchH-HHHHHHHHhccCcEEEEEeEE-------------C---------
Q psy3048         268 LVEKDDRFELVCPP------SMGLVCFRLKGDNDL-TNQLYERLMSHKQIYIIKASF-------------Q---------  318 (367)
Q Consensus       268 ~L~~~~g~~~~~~~------~~~~v~f~~~~~~~~-~~~l~~~L~~~g~~~~~~~~~-------------~---------  318 (367)
                      .|++++++.+...+      ......|.++..... -+++.+.|.++|+- +.....             .         
T Consensus       265 ~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~-~~~~y~plh~~~~~~~~~~~~~~~~~~~~  343 (384)
T d1b9ha_         265 LLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLP-AFAAFRAIYRTDAFWELGAPDESVDAIAR  343 (384)
T ss_dssp             HHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCC-EEECCCCGGGSHHHHHSSCCSSCHHHHHH
T ss_pred             hhhcccccccccccccccccccccccceecccccccHHHHHHHHHHCCCC-eeeeCcchhcCHHHHhcCCCccccccccc
Confidence            99999887654321      123445555433322 24789999988853 221100             0         


Q ss_pred             --------CeeEEEEEecCCCCC-HHHHHHHHHHHHHHHHH
Q psy3048         319 --------GRPFLRFVVTSPETN-QCDVAFAWNEISHQSSE  350 (367)
Q Consensus       319 --------~~~~lRi~~~~~~~~-~edid~li~~l~~~~~~  350 (367)
                              ....+.+ ++++..+ ++|++++++.|++++++
T Consensus       344 ~~Pna~~l~~~~l~L-P~~~~Lt~e~ei~~I~~~i~~~l~~  383 (384)
T d1b9ha_         344 RCPNTDAISSDCVWL-HHRVLLAGEPELHATAEIIADAVAR  383 (384)
T ss_dssp             TCHHHHHHHHHEEEE-EGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCEEEc-cCCCCCCCHHHHHHHHHHHHHHHhh
Confidence                    0135777 6667666 68999999999998775

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=8.2e-15  Score=140.05  Aligned_cols=295  Identities=15%  Similarity=0.131  Sum_probs=190.3

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG   81 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~   81 (367)
                      +||++|+++..++...          ....+++.+...|..........+..++.++.+.++..+.+.++++..+.+   
T Consensus       137 eA~~ma~r~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  203 (471)
T d1wyub1         137 TGILIIRAYHEDRGEG----------RTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHV---  203 (471)
T ss_dssp             HHHHHHHHHHHHTTCT----------TTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTE---
T ss_pred             HHHHHHHHHhhhcccc----------cccccccCCcccccceeeeeecccceeecccccccccccchhhhhhhhccc---
Confidence            4677787776654321          124455666666666666666778888888887889999999998876665   


Q ss_pred             CccEEEEEecCCCcccccC-ChhhHHHHHhhcCcEEEEecccccccc-cChhhhhhhCCCCCcceeeeccccccccC---
Q psy3048          82 LIPCCLVATLGTTGTCAFD-NLEELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTN---  156 (367)
Q Consensus        82 ~~~~~vv~~~~~t~~G~i~-dl~~I~~l~~~~gi~l~vD~a~~~~~~-~~~~~~~~~~~~~~~D~~~~~~hK~l~~p---  156 (367)
                         ..++++.+++ .|.++ +++++.+++|+.|..+++|++.....+ ......   .   ..|.++.+.|+.|+.|   
T Consensus       204 ---a~v~v~~p~~-~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~---~---g~div~vg~~q~~G~P~~~  273 (471)
T d1wyub1         204 ---AALMLTNPNT-LGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGD---M---GFDVVHLNLHKTFTVPHGG  273 (471)
T ss_dssp             ---EEEEECSSCT-TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH---H---TCSEEECCTTTTTCCCCTT
T ss_pred             ---cceeeccCCC-cccccchhhhhHHHHHhccccccccccchhhhhhccccCc---c---ccccccccccccccccccc
Confidence               4677777655 56664 699999999999999999987543322 111111   1   2388889999987665   


Q ss_pred             --CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccc-
Q psy3048         157 --HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR-  233 (367)
Q Consensus       157 --~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  233 (367)
                        +++|++.+++.  +.+.+.  ...+..+..       .+ +.             ..    ...++++.-. .+++. 
T Consensus       274 GGP~~G~~a~~~~--~~R~~P--GRiV~~~~~-------~~-~~-------------~~----~REqhIrRe~-actnqa  323 (471)
T d1wyub1         274 GGPGSGPVGVKAH--LAPYLP--VPLVERGEE-------GF-YL-------------DF----DRPKSIGRVR-SFYGNF  323 (471)
T ss_dssp             SCCCCCCEEECGG--GGGGCC--SCEEEECSS-------CE-EE-------------EC----CCTTCCCCSS-STTSCH
T ss_pred             ccccccceeehhh--hhccCC--CceecCCCc-------cc-cc-------------cC----CCcccccchh-hhhhhH
Confidence              56777777543  222221  111211110       00 00             00    0011111111 12222 


Q ss_pred             ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEE
Q psy3048         234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYI  312 (367)
Q Consensus       234 ~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~  312 (367)
                      ..++..+.++..+|.+|++++.+++..+++|+.++|+. +|+++..+ +.++.+.++++. +....++.++|.+.|.+..
T Consensus       324 L~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~~-~~~~~~i~k~L~~~G~~~~  401 (471)
T d1wyub1         324 LALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPPE-GFRALDLAKGLLELGFHPP  401 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCST-TCCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCCC-CCCHHHHHHHHHHcCCCCC
Confidence            34566777888999999999999999999999999976 69998653 566776666543 2235678999999995432


Q ss_pred             EEeEE-CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         313 IKASF-QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       313 ~~~~~-~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      ..... .+.+.+-|++ .-.+|++|||+|+++|+++++++.
T Consensus       402 ~~~~p~~~~~~llv~v-TE~~tkedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         402 TVYFPLIVKEALMVEP-TETEAKETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             EESCSTTSTTCEEECC-CTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             cccCcCCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHhhH
Confidence            11111 1344676755 456789999999999999988764

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=7.5e-16  Score=145.43  Aligned_cols=264  Identities=11%  Similarity=-0.013  Sum_probs=168.3

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      -.|++.+.++......++..|++++.++..  +++.+|++++++++.+.+      .+++++.|+||||.+   +.+++|
T Consensus       118 d~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~------~~v~l~~P~NPTG~~~s~~~~~~l  191 (395)
T d1xi9a_         118 DEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT------KAIAVINPNNPTGALYDKKTLEEI  191 (395)
T ss_dssp             CEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhcccc------cEEEecCCCCCccchhhHHHHHHH
Confidence            356667789999999999999999998864  468899999999887655      488899999999998   456888


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccccC-CcceeEEEecchh-hhhhccCCccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANH-LTNTFFTDRVYLK  182 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~-~~~~~~~~~~yl~  182 (367)
                      +++|++||++++.|.+|....+....... ....-.+ -++..+..|.++.| ..+|++++.+... +..... ....+.
T Consensus       192 ~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~-~~~~~~  269 (395)
T d1xi9a_         192 LNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVP-VIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVRE-AIDRLA  269 (395)
T ss_dssp             HHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSC-EEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHH-HHHHHH
T ss_pred             HhhhhhcCeeEEeccccccccccccccchhhcCCCCC-EEEEeCcchhcccchhhcEeeEecCHHHHHHHHHH-HHHHhh
Confidence            88999999999999999765443211111 1111111 25566789987754 6688887754321 111000 000000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA  262 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la  262 (367)
                      ...                                           .+...+.+..+..++. -+.+.+++..++..+.+
T Consensus       270 ~~~-------------------------------------------~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~  305 (395)
T d1xi9a_         270 RIR-------------------------------------------LCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERR  305 (395)
T ss_dssp             HHT-------------------------------------------CCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHH
T ss_pred             cCC-------------------------------------------CCcCHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            000                                           0000011122222222 23456777788888999


Q ss_pred             HHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCCCCCHHHH
Q psy3048         263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSPETNQCDV  337 (367)
Q Consensus       263 ~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~~~~~edi  337 (367)
                      +++.+.|++++++.+..|.....++.+++.. .....+++..|.++ |+ .+.|+..   .+.+++||++.   ++++++
T Consensus       306 ~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV-~v~PG~~Fg~~~~~~~Ris~~---~~~e~l  381 (395)
T d1xi9a_         306 DYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHV-LFVHGSGFGEYGAGHFRAVFL---PPIEIL  381 (395)
T ss_dssp             HHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCE-ECEEGGGGCGGGTTBEEEECC---SCHHHH
T ss_pred             HHHHHHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCE-EEEcChhhCCCCCCEEEEEec---CCHHHH
Confidence            9999999998777665444445555566432 12345666665544 64 4444322   23568999763   368899


Q ss_pred             HHHHHHHHHHHHH
Q psy3048         338 AFAWNEISHQSSE  350 (367)
Q Consensus       338 d~li~~l~~~~~~  350 (367)
                      +..++.|++++++
T Consensus       382 ~eal~rl~~~l~e  394 (395)
T d1xi9a_         382 EEAMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998775

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.64  E-value=1.9e-15  Score=141.46  Aligned_cols=270  Identities=13%  Similarity=0.061  Sum_probs=181.1

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPIC  109 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~  109 (367)
                      +-.|+++..++.+...++...|+++++++++.+..++++++++++.+.+      .+|+++   +..|...|+++|.++|
T Consensus        73 ~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t------~avi~v---h~~G~~~~~~~i~~~~  143 (371)
T d2fnua1          73 RNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERT------KAIVSV---DYAGKSVEVESVQKLC  143 (371)
T ss_dssp             SCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE------EEEEEE---CGGGCCCCHHHHHHHH
T ss_pred             CCeeecccccccccceeeeccCcccccccccccccccchhhhhhccchh------hccccc---cccccccccccccccc
Confidence            3468889999999999999999999999998887888888888776665      356655   4579999999999999


Q ss_pred             hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCC
Q psy3048         110 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN  189 (367)
Q Consensus       110 ~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~  189 (367)
                      +++|++++.|+||+.+.........   ..+.+.++++...|.+.+. +.|++++.+.+..++.....-.......    
T Consensus       144 ~~~~i~lIEDaaqa~Ga~~~~~~~G---~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~----  215 (371)
T d2fnua1         144 KKHSLSFLSDSSHALGSEYQNKKVG---GFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGMLKKD----  215 (371)
T ss_dssp             HHHTCEEEEECTTCTTCEETTEETT---SSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEEESS----
T ss_pred             cccchhhccchhhccCceeccccCC---ccccccccccccccccccc-cceEEEeechhhhhhccccccccccccc----
Confidence            9999999999999887654332211   2345678888889998875 5677777776655443211100000000    


Q ss_pred             CCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3048         190 TQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV  269 (367)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L  269 (367)
                        ...+                              .....+-.+++..+.+++.....+.++++.++.+++++++.+.|
T Consensus       216 --~~~~------------------------------~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l  263 (371)
T d2fnua1         216 --FFEG------------------------------EVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIF  263 (371)
T ss_dssp             --SSCE------------------------------EESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccc------------------------------ccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhcccc
Confidence              0000                              00011222333444555555566778999999999999999999


Q ss_pred             cCCCCeEEeCCC-----CceeEEEEEcCCc-hHHHHHHHHHhccCcEEEEEeEE-------------CC---------ee
Q psy3048         270 EKDDRFELVCPP-----SMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASF-------------QG---------RP  321 (367)
Q Consensus       270 ~~~~g~~~~~~~-----~~~~v~f~~~~~~-~~~~~l~~~L~~~g~~~~~~~~~-------------~~---------~~  321 (367)
                      ++++++.++.++     ......+.+.... ..-+++.+.|.++|+ .+.....             .+         ..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI-~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~  342 (371)
T d2fnua1         264 KDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGI-LAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHA  342 (371)
T ss_dssp             TTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTE-ECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhHHHHHHHHHHHCCC-CcceeCcccccCHHHHhccccCCCHHHHHHHhC
Confidence            999888876431     1222333333211 123578888888883 2211100             11         23


Q ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         322 FLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       322 ~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      .+.+ ++++..+++|++++++.|++..++
T Consensus       343 ~l~L-P~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         343 EISL-PCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             EEEE-CCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEC-cCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5666 678899999999999999998775

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.64  E-value=3.2e-15  Score=138.88  Aligned_cols=242  Identities=13%  Similarity=0.098  Sum_probs=153.4

Q ss_pred             cchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hhhHHHHHhhcC
Q psy3048          39 SNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LEELGPICQEYN  113 (367)
Q Consensus        39 ~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~~I~~l~~~~g  113 (367)
                      .+..........+++++.++++  +++.++ +++++++.+.+      .+|+++.++|+||.+.+   +.+|+++|++|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~------~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~  177 (355)
T d1lc5a_         105 GFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDL------DCLFLCTPNNPTGLLPERPLLQAIADRCKSLN  177 (355)
T ss_dssp             CCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTC------CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             ccceeccccccccccceeeeeeccCCccce-eeeeecccccc------ceeeeecccCcccccchhhhhhhhhhhccccc
Confidence            3334444555678888888875  345544 45555554444      47888999999999855   778888899999


Q ss_pred             cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCCCCCCC
Q psy3048         114 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQS  192 (367)
Q Consensus       114 i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  192 (367)
                      +++++|.+|..+.............. .-.++..+..|+++ .+..+|+++..+............+             
T Consensus       178 ~~li~De~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~-------------  243 (355)
T d1lc5a_         178 INLILDEAFIDFIPHETGFIPALKDN-PHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMP-------------  243 (355)
T ss_dssp             CEEEEECTTGGGSTTCCCSGGGCTTC-TTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCT-------------
T ss_pred             cccccccceeeeeeeccccccccccc-ccceeecccccccccccccccceeccchhhhHHHHhhcCC-------------
Confidence            99999999975433221111111111 12477788999987 4467898887544322211000000             


Q ss_pred             CCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         193 PDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                        +                               .      ...+...++...+ ..+.+.+.+++.++..+++.+.|.+
T Consensus       244 --~-------------------------------~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  284 (355)
T d1lc5a_         244 --W-------------------------------S------VNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ  284 (355)
T ss_dssp             --T-------------------------------C------SCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --c-------------------------------c------ccccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence              0                               0      0112233333333 2345677777888888999999999


Q ss_pred             CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC--CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         272 DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ--GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       272 ~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      ++++++. |...+.+++.++.   ...++.++|.++|++....+.+.  +..++||++.    +++|+++++++|++++
T Consensus       285 ~~~~~~~-p~~~~f~~~~~~~---~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         285 LPLLTVY-PGRANYLLLRCER---EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVL  355 (355)
T ss_dssp             STTEEEC-CCSSSEEEEEESC---TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC
T ss_pred             cCCcEEC-CCCCEEEEEECCC---CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHhC
Confidence            9898864 5566667777754   23578888998985443333332  3569999763    6899999999999873

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.2e-15  Score=142.57  Aligned_cols=253  Identities=12%  Similarity=0.010  Sum_probs=158.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC---hh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN---LE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d---l~  103 (367)
                      .-.|+++...|......+...|.+++.++.+   +++.+|++.|++++++.+      .++++++++|+||.+-+   ++
T Consensus       102 ~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~p~NPtG~~~~~~~l~  175 (368)
T d1v2da_         102 GDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRT------RALLLNTPMNPTGLVFGERELE  175 (368)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHH
T ss_pred             cccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhccCc------eEEEEcCCCCcccccCCHHHHH
Confidence            3456666778888888888899988887763   458899999999987765      47888999999999965   88


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccc-cccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH-KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~h-K~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|+++|++||+++++|++++................+. ..+..+.. |+......+|++...+ +......... ....
T Consensus       176 ~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sk~~~~~G~R~g~~~~~~-~~~~~~~~~~-~~~~  252 (368)
T d1v2da_         176 AIARLARAHDLFLISDEVYDELYYGERPRRLREFAPER-TFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMR-QWTS  252 (368)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTT-EEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHH-HHHT
T ss_pred             HHHHHHHHcCCeeeechhhhhhcccccccccccccccc-cceeecccccccccccccccccccc-cccchhhhhh-hccc
Confidence            89999999999999999987544432211111111112 33344444 4444446677766543 2222110000 0000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-hHHHHHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-GLKGLQAYLRKHISL  261 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~~~~~~~~l  261 (367)
                                                                    ..........+..++... ..+.+++..+...+.
T Consensus       253 ----------------------------------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  286 (368)
T d1v2da_         253 ----------------------------------------------FSAPTPLQAGVAEALKLARREGFYEALREGYRRR  286 (368)
T ss_dssp             ----------------------------------------------SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             ----------------------------------------------cccccccccccccccccccchhhHHHHHHHHHHh
Confidence                                                          000001111222223222 123567777777888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeE-E----CCeeEEEEEecCCCCCHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS-F----QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~----~~~~~lRi~~~~~~~~~ed  336 (367)
                      .+++.+.|+++ |+++..+.....+++++++.+  ..+   .|.+.|+ .+.++. +    .+++++|+++.   +++++
T Consensus       287 ~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~~--~~~---ll~~~gI-~v~pg~~F~~~~~~~~~iRis~~---~~~e~  356 (368)
T d1v2da_         287 RDLLAGGLRAM-GLRVYVPEGTYFLMAELPGWD--AFR---LVEEARV-ALIPASAFYLEDPPKDLFRFAFC---KTEEE  356 (368)
T ss_dssp             HHHHHHHHHHT-TCCEECCSBSSEEEEECTTCC--HHH---HHHHTCE-ECEEGGGGCSSSCCTTEEEEECC---SCHHH
T ss_pred             hhhhhhhHHhc-CcEEecCCceeEEEEeCCccH--HHH---HHHhCCE-EEEechhhCCCCCCCCEEEEEec---CCHHH
Confidence            89999999987 888877665666777776422  223   3555774 444432 2    24579999763   36899


Q ss_pred             HHHHHHHHHHH
Q psy3048         337 VAFAWNEISHQ  347 (367)
Q Consensus       337 id~li~~l~~~  347 (367)
                      ++++++.|+++
T Consensus       357 i~~ai~rL~~~  367 (368)
T d1v2da_         357 LHLALERLGRV  367 (368)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999886

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=5.9e-15  Score=140.23  Aligned_cols=272  Identities=11%  Similarity=0.029  Sum_probs=168.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCC---CccEEEEEecCCCccccc---CChh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG---LIPCCLVATLGTTGTCAF---DNLE  103 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~---~~~~~vv~~~~~t~~G~i---~dl~  103 (367)
                      .-.|++.+..+......++..|++++.++.++ ..++++.++..+.+..+..   ....+++++.++|+||.+   +.++
T Consensus       128 Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~  206 (420)
T d1vp4a_         128 ESYCVLDDPAYLGAINAFRQYLANFVVVPLED-DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRK  206 (420)
T ss_dssp             TCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHH
T ss_pred             ccccccccccccchhHHHHHHhhhcccccccc-cccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhh
Confidence            34556677889999999999999999999864 4579999988876543321   112456677889999997   5778


Q ss_pred             hHHHHHhhcCcEEEEecccccccccChhhhhh-hCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccc
Q psy3048         104 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLK  182 (367)
Q Consensus       104 ~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~-~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~  182 (367)
                      +|+++|++|++++++|++|+...+..+..... ..+....-++..++.|++..+..+|+++.. ++.+...... .....
T Consensus       207 ~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~-~~~i~~l~~~-~~~~~  284 (420)
T d1vp4a_         207 ALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGS-KEFIRKIVQA-KQSAD  284 (420)
T ss_dssp             HHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECC-HHHHHHHHHH-HHHHH
T ss_pred             hhhhhhhcccccccccchhhhccccCcccccccccccccceeEEecccccccccccccccccc-chhhhhhhhh-hhhcc
Confidence            99999999999999999997655432211100 001112256667789998877888987763 3333221100 00000


Q ss_pred             cCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh-----hHHHHHHHHHH
Q psy3048         183 HTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY-----GLKGLQAYLRK  257 (367)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~g~~~~~~~  257 (367)
                      .                                              .+..+........+...     -.+-.+...++
T Consensus       285 ~----------------------------------------------~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~  318 (420)
T d1vp4a_         285 L----------------------------------------------CSPAITHRLAARYLERYDLLEQLKPTIELYRRK  318 (420)
T ss_dssp             S----------------------------------------------SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHH
T ss_pred             c----------------------------------------------cCchhhhhhhhhhcccccccccchhHHHHhhhh
Confidence            0                                              00001111111112111     11223344445


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCC
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETN  333 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~  333 (367)
                      ...+.+.+.+.+.+++|+++..|.....++++++. .....++.+.|.+.|+...+++.+    .+.+++|++++  ..+
T Consensus       319 ~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~-~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~--~~~  395 (420)
T d1vp4a_         319 RTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC--LPP  395 (420)
T ss_dssp             HHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS--SSC
T ss_pred             cccchhhhhhhhccCCCcEEecCCceEEEEEECCC-CCCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC--cCC
Confidence            55666666777777889988766555566777754 223456778888888544333222    13569999764  246


Q ss_pred             HHHHHHHHHHHHHHHHHhhC
Q psy3048         334 QCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       334 ~edid~li~~l~~~~~~~~~  353 (367)
                      +++++..++.|++++++..+
T Consensus       396 ~e~l~~a~~rL~~~l~~~~~  415 (420)
T d1vp4a_         396 DEKIVEGIKRLREVVLEYGK  415 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhH
Confidence            89999999999999988754

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.60  E-value=7.3e-15  Score=138.44  Aligned_cols=266  Identities=9%  Similarity=-0.047  Sum_probs=160.7

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecC---CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~---~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      -.|++....++.....+...|.+.+.++..   ..+.+|.+.++.++....     +.++++++++||||.+   +.+++
T Consensus       114 d~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~i~l~~P~NPTG~v~s~~~l~~  188 (394)
T d1c7na_         114 DGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKN-----NKALLFCSPHNPVGRVWKKDELQK  188 (394)
T ss_dssp             CEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTT-----EEEEEEESSBTTTTBCCCHHHHHH
T ss_pred             cccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhcccc-----ceEEEecccccccceeccHHHhhh
Confidence            344456678888888888889888877653   346789888888764321     2588899999999999   45777


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhCCC---CCcceeeecccccccc-CCcceeEEEecchhhhhhccCCccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL---EYVDSFAFNAHKWLLT-NHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~---~~~D~~~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      |+++|++||+++++|++|+...+............   ...-+.+.+..|.++. +..+|++++.+....+ .+.....+
T Consensus       189 l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~-~~~~~~~~  267 (394)
T d1c7na_         189 IKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRE-RFTKSRDA  267 (394)
T ss_dssp             HHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH-HHHHHHHH
T ss_pred             hhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhh-hhhhhhhh
Confidence            89999999999999999976544321111100000   1123556677888764 4777887776543322 11000000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHIS  260 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  260 (367)
                      ....                                              ........+.........+..++..+...+
T Consensus       268 ~~~~----------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  301 (394)
T d1c7na_         268 TSGM----------------------------------------------PFTTLGYKACEICYKECGKWLDGCIKVIDK  301 (394)
T ss_dssp             TTCC----------------------------------------------CCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccc----------------------------------------------ccccccchhhhhhhcchhhhhcccccccch
Confidence            0000                                              000000111111112234455555555566


Q ss_pred             HHHHHHHHhcC-CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhcc-CcEEEEEeEE---CCeeEEEEEecCCCCCHH
Q psy3048         261 LAKKFADLVEK-DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSH-KQIYIIKASF---QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       261 la~~l~~~L~~-~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~---~~~~~lRi~~~~~~~~~e  335 (367)
                      ..+.+.+.++. .+++.+..|.....++++++.......++++.|.++ |+ .+.|+..   .+++++|+++.   ++++
T Consensus       302 ~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV-~v~pG~~Fg~~~~~~iRis~~---~~~e  377 (394)
T d1c7na_         302 NQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQI-FFDEGYIFGDGGIGFERINLA---APSS  377 (394)
T ss_dssp             HHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCC-CCEEGGGGCGGGTTEEEEECC---SCHH
T ss_pred             hhhhhhhhhhccccceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCE-EEEcchhhCCCCCCEEEEEEe---CCHH
Confidence            66666666654 356665444445556666653223467888888766 64 4444332   23569999763   3688


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy3048         336 DVAFAWNEISHQSSEMN  352 (367)
Q Consensus       336 did~li~~l~~~~~~~~  352 (367)
                      +++..+++|++++++++
T Consensus       378 ~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         378 VIQESLERLNKALKDLK  394 (394)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999998863

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.60  E-value=1.3e-14  Score=136.87  Aligned_cols=271  Identities=12%  Similarity=0.054  Sum_probs=162.4

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhh-CCCccEEEEEecCCCccccc---CChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLA-KGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~-~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      .-.|++.+.++..+...+...|++++.|+.++++. +...+........+ ......+++.+.++|+||.+   +.+++|
T Consensus       118 gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i  196 (403)
T d1wsta1         118 GDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKL  196 (403)
T ss_dssp             TCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred             CCccccCCCcchhhhHHHhhccccceeEeecccCC-ccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHH
Confidence            34566677899999999999999999999865432 34444433332222 22334678888899999988   456788


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhh--hCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~--~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++|++||+++++|++|+...+........  .... ...+++.+.+|+++.+..+|+++... ..+...... ......
T Consensus       197 ~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~G~RiG~~i~~~-~~i~~~~~~-~~~~~~  273 (403)
T d1wsta1         197 LELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY-GRVIYLGTFSKILAPGFRIGWVAAHP-HLIRKMEIA-KQSIDL  273 (403)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS-SCEEEEEESTTTTCGGGCCEEEEECH-HHHHHHHHH-HHHHHS
T ss_pred             HHHHHhcCceeccccchhheecCCCCCCcccccCCC-CcEEEEccccceecCcccccccccch-HHHHHHHHH-Hhhhcc
Confidence            889999999999999997654432211110  1111 23577788999997668888888743 222211100 000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS-YGLKGLQAYLRKHISLA  262 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~la  262 (367)
                                                                    ...........+.+.. .....+.+..+...+..
T Consensus       274 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (403)
T d1wsta1         274 ----------------------------------------------CTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRR  307 (403)
T ss_dssp             ----------------------------------------------SCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------ccccchhhhHHhhhhccccchhHHHHHHHHHHHH
Confidence                                                          0000001111111111 12233455555566666


Q ss_pred             HHHHHHhcCC--CCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE----CCeeEEEEEecCCCCCHHH
Q psy3048         263 KKFADLVEKD--DRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF----QGRPFLRFVVTSPETNQCD  336 (367)
Q Consensus       263 ~~l~~~L~~~--~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----~~~~~lRi~~~~~~~~~ed  336 (367)
                      +.+.+.|.+.  .++....|.....++++++. ......+.+.|.++|+....++.+    .+++++|++++  ..++++
T Consensus       308 ~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~-~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~--~~~~~~  384 (403)
T d1wsta1         308 DAMLEALEEYMPEGVEWTKPEGGMFVRVTLPE-GIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFT--YVPEET  384 (403)
T ss_dssp             HHHHHHHHHHCCTTCEECCCSBSSEEEEECCT-TCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECS--SSCHHH
T ss_pred             HHHHHHHHhhccCCeEEeCCCceeEEEEECCC-CCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEec--CCCHHH
Confidence            6666666553  36666555555666677764 333567888888888543332222    23579999763  347899


Q ss_pred             HHHHHHHHHHHHHHhhC
Q psy3048         337 VAFAWNEISHQSSEMNL  353 (367)
Q Consensus       337 id~li~~l~~~~~~~~~  353 (367)
                      ++..++.|++++++..+
T Consensus       385 l~~al~rl~~~l~~~~k  401 (403)
T d1wsta1         385 IREGVRRLAETIKEEMK  401 (403)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999886543

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=4.2e-15  Score=138.78  Aligned_cols=120  Identities=18%  Similarity=0.209  Sum_probs=90.1

Q ss_pred             ceEEEec-CCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCc-ccccCChhhHHH
Q psy3048          30 RLVAYAS-DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTG-TCAFDNLEELGP  107 (367)
Q Consensus        30 ~~~v~~s-~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~-~G~i~dl~~I~~  107 (367)
                      +-+|+.+ ..+|.+...+++..|+++  ++.+     |+++|++++++.++      +|++++++|+ ++.+.|+++|++
T Consensus        92 ~~vi~~~~~~~~~~~~~~~~l~g~~~--v~~~-----d~e~l~~~i~~~tk------~i~~~~p~n~~~~~~~~l~~i~~  158 (366)
T d2aeua1          92 KVIHYLPELPGHPSIERSCKIVNAKY--FESD-----KVGEILNKIDKDTL------VIITGSTMDLKVIELENFKKVIN  158 (366)
T ss_dssp             EEEEECSSSSCCTHHHHHHHHTTCEE--EEES-----CHHHHHTTCCTTEE------EEEECBCTTSCBCCHHHHHHHHH
T ss_pred             CEEEEecCCCcchhHHHHHHhcCCeE--ECCC-----CHHHHHHhcCCCce------EEEEEecCCCCcCCHHHHHHHHH
Confidence            4455544 579999999999999875  4544     89999999988774      7778887775 456789999999


Q ss_pred             HHhhcCcEEEEecccccccccChhh-hhhhCCCCCcceeeeccccccccCCcceeEEEec
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~-~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      +||+||+++++|++|+.+.+..... .....+   +|++++|.||++.+ ++.|+++.++
T Consensus       159 ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~---~di~~~S~sK~~~g-~~~G~i~~~~  214 (366)
T d2aeua1         159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLG---ADLVVTSTDKLMEG-PRGGLLAGKK  214 (366)
T ss_dssp             HHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT---CSEEEEETTSSSSS-CSCEEEEEEH
T ss_pred             HhccCcEEEEEecCccccccccccCCCHhhcC---ceEEEecccccccc-cceeEEEecH
Confidence            9999999999999998654421110 111123   49999999998875 4778888754

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=5.5e-14  Score=130.40  Aligned_cols=248  Identities=10%  Similarity=-0.005  Sum_probs=160.1

Q ss_pred             cCceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          28 KSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        28 ~~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .++.+|+++...+......++..|.+++.++.++++.+|++++++++. .      +.+|+++.++|++|.+.+-+++..
T Consensus        96 pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~-~------~~~v~~~~pnNPtG~~~~~~~~~~  168 (354)
T d1fg7a_          96 PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRT  168 (354)
T ss_dssp             TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhccCceeeccccccccccchhhhhhccc-c------cceeeccCCCccceeEeeeccccc
Confidence            346678888899999999999999999999988899999999988763 2      358899999999999966544443


Q ss_pred             HHh--hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         108 ICQ--EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       108 l~~--~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++.  +++.++++|.++.-+....  ..........--++..+..|.++ ++..+|+++.. ++.+........++    
T Consensus       169 ~~~~~~~~~~~iidd~~~~f~~~~--~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~-~~~i~~l~~~~~~~----  241 (354)
T d1fg7a_         169 LLELTRGKAIVVADEAYIEFCPQA--SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLAN-EEVINLLMKVIAPY----  241 (354)
T ss_dssp             HHHHHTTTCEEEEECTTGGGSGGG--CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEEC-HHHHHHHHHHSCSS----
T ss_pred             ccccccccccccccccchhhcccc--ccchhhcccccceEEeCCccccCCCcccccccccc-chhhhhhhhhcCcc----
Confidence            322  3677788888775432211  11111111112355678999987 45788988763 33333221100000    


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhH---HHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGL---KGLQAYLRKHISL  261 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~~l  261 (367)
                                                                ..      .......+...+..   .......++..+.
T Consensus       242 ------------------------------------------~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  273 (354)
T d1fg7a_         242 ------------------------------------------PL------STPVADIAAQALSPQGIVAMRERVAQIIAE  273 (354)
T ss_dssp             ------------------------------------------CS------CHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------ch------hhHHHHHHHHHHhhhccccccccchhhhhH
Confidence                                                      00      01111112222222   2344445566777


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-CCeeEEEEEecCCCCCHHHHHHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-QGRPFLRFVVTSPETNQCDVAFA  340 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~lRi~~~~~~~~~edid~l  340 (367)
                      .+++.+.+.+++++....|+..+.++++++.    +.++.+.|.++|++...++.. ..++++||++.    +++|.+++
T Consensus       274 r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~----~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig----t~ee~~~~  345 (354)
T d1fg7a_         274 REYLIAALKEIPCVEQVFDSETNYILARFKA----SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG----TREESQRV  345 (354)
T ss_dssp             HHHHHHHHHHSTTEEEECCCSSSEEEEEETT----HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC----CHHHHHHH
T ss_pred             HHHHHHHHHhCCCcceeCCCCceEEEEeCCC----HHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC----CHHHHHHH
Confidence            8888899999988876667777778888753    567889999998654333322 22579999763    68899999


Q ss_pred             HHHHH
Q psy3048         341 WNEIS  345 (367)
Q Consensus       341 i~~l~  345 (367)
                      +++|+
T Consensus       346 l~aLk  350 (354)
T d1fg7a_         346 IDALR  350 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99886

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=7.9e-16  Score=142.47  Aligned_cols=248  Identities=9%  Similarity=-0.126  Sum_probs=150.2

Q ss_pred             HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEeccccccc
Q psy3048          47 AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSA  126 (367)
Q Consensus        47 ~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~  126 (367)
                      ++..|..++.+..+.+...+.+.+++.+...+      .++++++.+|.||+..|+.++.  ++.+++.+++|++++.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~  179 (360)
T d1bjna_         108 AKKYCTPNVFDAKVTVDGLRAVKPMREWQLSD------NAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILS  179 (360)
T ss_dssp             HTTTSEEEEEECEEEETTEEEECCGGGCCCCS------SCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTS
T ss_pred             HhhcCccceeeccccCCCcchhhhhhhhccCC------ceeEEEecccccccCcccccee--cccccceeeeeeeccccc
Confidence            34456555555554445556666665554444      3666777889999998888775  577899999999998877


Q ss_pred             ccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCC
Q psy3048         127 LLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALG  206 (367)
Q Consensus       127 ~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~  206 (367)
                      ...+..        .+|+..+++||+++.|+|.+++++....... . .....+....              .+      
T Consensus       180 ~~vd~~--------~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--------------~~------  229 (360)
T d1bjna_         180 RPIDVS--------RYGVIYAGAQKNIGPAGLTIVIVREDLLGKA-N-IACPSILDYS--------------IL------  229 (360)
T ss_dssp             SCCCGG--------GCSEEEEETTTTTSSTTCEEEEEEGGGCSCC-C-TTSCGGGCHH--------------HH------
T ss_pred             eeeeec--------cceeEEEEcccccccCCCceeEeeehhhhhc-c-ccCCcchhhH--------------HH------
Confidence            665432        3499999999999999998888875432111 0 0000000000              00      


Q ss_pred             CcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCC---Cc
Q psy3048         207 LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPP---SM  283 (367)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~---~~  283 (367)
                           ......       ....  ..........+.+......+.+...++....+.++...+..........++   ..
T Consensus       230 -----~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~  295 (360)
T d1bjna_         230 -----NDNGSM-------FNTP--PTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSR  295 (360)
T ss_dssp             -----HHTTTC-------SSCC--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCS
T ss_pred             -----Hhhhhh-------cccc--ccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccc
Confidence                 000000       0000  000111222233333344566677777777777777777776444333322   34


Q ss_pred             eeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         284 GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       284 ~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++++|.+++ +...+++.+.|.++|++...+  ++.-+.+|||. ..++|+|||++|+++|+++.++
T Consensus       296 ~v~~f~~~~-~~~~~~~~~~l~~~Gi~~~~G--~~~~g~~Ris~-~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         296 MNVPFQLAD-SALDKLFLEESFAAGLHALKG--HRVVGGMRASI-YNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             SEEEEEESS-GGGHHHHHHHHHHTTEECCBC--CTTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCC-cccHHHHHHHHHHCCCEeecC--CCccCeEEEEe-cCCCCHHHHHHHHHHHHHHHHH
Confidence            678899875 455678888999998532221  11112489975 7899999999999999998764

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.57  E-value=1.4e-15  Score=141.46  Aligned_cols=248  Identities=11%  Similarity=-0.044  Sum_probs=144.6

Q ss_pred             HHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccc
Q psy3048          44 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA  123 (367)
Q Consensus        44 ~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~  123 (367)
                      ...+...|..++.++.+.+...+++.+++.+...+       .   ++.++.+|...|+.+|.++|+++|++++||++++
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss  176 (361)
T d2c0ra1         107 LKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN-------A---AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSD  176 (361)
T ss_dssp             HHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT-------E---EEEEEESEETTTTEECSSCCCCTTSCEEEECTTT
T ss_pred             hhhhhhcCceeeeeccccccccchhhhhhhcccCc-------c---eEEEEecccceecceEEEeeccCCceEEEEeecc
Confidence            33445567788888877777778888876654432       2   2334678999999999999999999999999999


Q ss_pred             cccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcc
Q psy3048         124 GSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK  203 (367)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~  203 (367)
                      .+..+.+..        .+|+..+++||+++.|++.++++. ...... .......+.            .|  ..+...
T Consensus       177 ~g~~~id~~--------~~di~~~s~~k~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~------------~~--~~~~~~  232 (361)
T d2c0ra1         177 ILSRPFDLN--------QFGLVYAGAQKNLGPSGVTVVIVR-EDLVAE-SPKHLPTML------------RY--DTYVKN  232 (361)
T ss_dssp             TTSSCCCGG--------GCSEEEEETTTTTCCSSCEEEEEE-GGGSSS-CCTTSCGGG------------CH--HHHHHT
T ss_pred             ccccccccc--------cceeEEEecccccccccCcEEEEE-hHHhhh-Ccccccccc------------cc--cccccc
Confidence            887766432        237777788999886665555444 332111 100000000            00  000000


Q ss_pred             cCCCcchhccCCCCCCCCccccccccccccccHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeE-EeCCC
Q psy3048         204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW-MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFE-LVCPP  281 (367)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~-~~~~~  281 (367)
                                 ...        ..  .........+. +........+.....++.+..+..+.+......... ...++
T Consensus       233 -----------~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (361)
T d2c0ra1         233 -----------NSL--------YN--TPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV  291 (361)
T ss_dssp             -----------TTC--------SS--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG
T ss_pred             -----------ccc--------cc--cccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCCh
Confidence                       000        00  00000111111 222222334455555566666666666655543332 33222


Q ss_pred             ---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         282 ---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       282 ---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                         ...+++|++++ .....++.+.|.++|++ +..+ +..-+.+||+. ..+++.|||++|+++|+++.++
T Consensus       292 ~~rS~~~~~~~~~~-~~~~~~~~~~L~~~GI~-~~~G-~~~~g~~RIs~-~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         292 DSRSDMNITFRLAS-EELEKEFVKASEQEGFV-GLKG-HRSVGGLRASI-YNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             GGBCSSEEEEECSC-HHHHHHHHHHHHHTTEE-SCBC-CTTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccceEEEEECCC-cccHHHHHHHHHHCCCE-EecC-CCcCCeEEEEe-cCCCCHHHHHHHHHHHHHHHHh
Confidence               23567888865 45567888999988843 2222 22112499975 7889999999999999998765

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.7e-14  Score=132.36  Aligned_cols=255  Identities=11%  Similarity=0.045  Sum_probs=170.1

Q ss_pred             cCCcchhHHHHHHhCC--cceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcC
Q psy3048          36 SDQSNSSVEKSAIIGD--VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN  113 (367)
Q Consensus        36 s~~~H~s~~~~~~~~g--~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~g  113 (367)
                      +.-+|.+....+...|  .+.+..++++++.+|.+++++..++..     |.+|++.  .+......|++++.+||++.|
T Consensus       121 ~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~k-----PklIi~G--~S~y~r~~d~~~~reiad~vg  193 (416)
T d1dfoa_         121 AHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHK-----PKMIIGG--FSAYSGVVDWAKMREIADSIG  193 (416)
T ss_dssp             TTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHC-----CSEEEEE--CSSCCSCCCHHHHHHHHHHTT
T ss_pred             cccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhc-----cceEEec--ccccccccCHHHHHHHHHhcC
Confidence            4456666544333333  355556667788899999999987764     6676655  455677789999999999999


Q ss_pred             cEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecc--hhhhhhccCCccccccCCCCCCCC
Q psy3048         114 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNA--NHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       114 i~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~--~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                      +++++|.||-.|.+....+..   .+..+|+++.+.||.|.+| ..|+++++++  +..++. .   ..++++.+     
T Consensus       194 a~l~~D~aH~~GLIa~g~~~s---P~~~aDvvt~tThKtlrGP-rggiI~~~~~~~~~~~~i-~---~avfPg~q-----  260 (416)
T d1dfoa_         194 AYLFVDMAHVAGLVAAGVYPN---PVPHAHVVTTTTHKTLAGP-RGGLILAKGGSEELYKKL-N---SAVFPGGQ-----  260 (416)
T ss_dssp             CEEEEECTTTHHHHHHTSSCC---CTTTSSEEEEESSSTTCCC-SCEEEEESSCCHHHHHHH-H---HHHTTTTC-----
T ss_pred             ceEEcchhhhhcceeccccCC---cccccceeeeehhhcccCC-CceEEEeccchHhHHHHH-H---hhhCcccc-----
Confidence            999999999887765544432   3556899999999999988 4567777532  222211 0   00111111     


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVE  270 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~  270 (367)
                                                            ++.... ..+...++.......+.+..++..++++.|.+.|.
T Consensus       261 --------------------------------------ggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~  302 (416)
T d1dfoa_         261 --------------------------------------GGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFL  302 (416)
T ss_dssp             --------------------------------------SSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------cCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                  111111 13344556665556778888999999999999999


Q ss_pred             CCCCeEEeC-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-------CCeeEEEEEe---cCCCCCHHHHHH
Q psy3048         271 KDDRFELVC-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-------QGRPFLRFVV---TSPETNQCDVAF  339 (367)
Q Consensus       271 ~~~g~~~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------~~~~~lRi~~---~~~~~~~edid~  339 (367)
                      +. |++++. ..+.+++.+.+.+.+....+..+.|.+.|+ .+-....       ..+..+|+..   +.....++|+++
T Consensus       303 ~~-G~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~  380 (416)
T d1dfoa_         303 ER-GYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANI-TVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKE  380 (416)
T ss_dssp             HT-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred             hC-CcccccCCCCCceeEEEecccCCCHHHHHHHHHHcCe-EEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHH
Confidence            86 999985 346778888775433234566666777774 3322111       1245799954   345567899999


Q ss_pred             HHHHHHHHHHH
Q psy3048         340 AWNEISHQSSE  350 (367)
Q Consensus       340 li~~l~~~~~~  350 (367)
                      +.+.|.++++.
T Consensus       381 iA~~I~~~l~~  391 (416)
T d1dfoa_         381 LAGWMCDVLDS  391 (416)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999888764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.4e-14  Score=134.42  Aligned_cols=258  Identities=10%  Similarity=0.013  Sum_probs=161.4

Q ss_pred             eEEEecCCcchhHHHHHHhCCcceEEEecCC-CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~-~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~  106 (367)
                      -.|++....+......+...|+.++.++.+. ++..+.+.+.+...+.+      .+++++.++|+||.+   +++++|+
T Consensus       112 d~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~nP~NPtG~~~s~~~~~~i~  185 (389)
T d2gb3a1         112 DEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT------KGIVLSNPCNPTGVVYGKDEMRYLV  185 (389)
T ss_dssp             CEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccCc------cEEEeCCCCccccccchHHHHHHHH
Confidence            4566667788888888888999999888864 35555555555544443      578889999999988   5688999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      ++|++||++++.|++|+...+....... ......-.++..+..|.+..| ..+|+++..+...............    
T Consensus       186 ~~a~~~~~~iI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~----  260 (389)
T d2gb3a1         186 EIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL----  260 (389)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC----
T ss_pred             hhcccCCEEEEEeccccccccccccccc-cccccccccccccccccccCcccceeeeeccchhHHHHHhhhhhccc----
Confidence            9999999999999999765543321111 111112234555666666555 7789888755432221100000000    


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHH--HHHhhHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMT--LRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                  ..   ..+...++  +.....+.+++..++.++..+
T Consensus       261 --------------------------------------------~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (389)
T d2gb3a1         261 --------------------------------------------AP---PLLEQIGSVGLLNLDDSFFDFVRETYRERVE  293 (389)
T ss_dssp             --------------------------------------------CC---CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cc---cccccccccccccccchhcccccccccccch
Confidence                                                        00   01111111  222234567777888889999


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccC-----cEEEEEeE-E-----CCeeEEEEEecCCCC
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHK-----QIYIIKAS-F-----QGRPFLRFVVTSPET  332 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~-~-----~~~~~lRi~~~~~~~  332 (367)
                      ++.+.|+++++.....|.....++++++..  .+.++.++|.++.     .+.+.|.. +     .+++++|+++.   .
T Consensus       294 ~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~--~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~---~  368 (389)
T d2gb3a1         294 TVLKKLEEHGLKRFTKPSGAFYITAELPVE--DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---L  368 (389)
T ss_dssp             HHHHHHHHTTCCCBCCCSBSSEEEEECSSS--CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---S
T ss_pred             hhhhhhhhhccccccCCCceEEEEEeCCCC--CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc---C
Confidence            999999998544434445556677777643  3567777776542     12233321 1     13579999753   4


Q ss_pred             CHHHHHHHHHHHHHHHHHh
Q psy3048         333 NQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       333 ~~edid~li~~l~~~~~~~  351 (367)
                      +++++++.++.|++.+++.
T Consensus       369 ~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         369 EKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            6889999999999888763

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=4.7e-15  Score=135.31  Aligned_cols=256  Identities=13%  Similarity=0.042  Sum_probs=143.6

Q ss_pred             ecCCcchhHHHHH---HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEec-CCCccccc---CChhhHHH
Q psy3048          35 ASDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATL-GTTGTCAF---DNLEELGP  107 (367)
Q Consensus        35 ~s~~~H~s~~~~~---~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~-~~t~~G~i---~dl~~I~~  107 (367)
                      +....|++.....   ...+..++.++. ..+..|++.+++.+...+++...+..++.+. +++..|.+   +++.+|.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  156 (343)
T d1m6sa_          78 LEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICT  156 (343)
T ss_dssp             EETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred             ccccccceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHH
Confidence            3445665543322   223344444543 4577899999999988776655454444444 44555554   46667788


Q ss_pred             HHhhcCcEEEEecccccccccChh--hhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCC
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPE--YAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD  185 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~--~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~  185 (367)
                      +|++||+++++|++++.+......  ......   ..+..+++.+|...+..+.+.+..  ........... .+.....
T Consensus       157 ~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~-~~~~~~~  230 (343)
T d1m6sa_         157 IAKEHGINVHIDGARIFNASIASGVPVKEYAG---YADSVMFCLSKGLCAPVGSVVVGD--RDFIERARKAR-KMLGGGM  230 (343)
T ss_dssp             HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH---TCSEEEEESSSTTCCSSCEEEEEC--HHHHHHHHHHH-HHHTCCC
T ss_pred             HHHhcCeEEEeccccccccccccccchhhhcc---cccccccccccccccccccccccc--HHHHhhhHhhC-ccccccc
Confidence            889999999999998765432110  011111   236667777777665544333322  22221110000 0000000


Q ss_pred             CCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3048         186 APMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKF  265 (367)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l  265 (367)
                                                                 ...  ....+.........    ....+...+...++
T Consensus       231 -------------------------------------------~~~--~~~~a~~~~~~~~~----~~~~~~~~~~~~~~  261 (343)
T d1m6sa_         231 -------------------------------------------RQA--GVLAAAGIIALTKM----VDRLKEDHENARFL  261 (343)
T ss_dssp             -------------------------------------------SST--HHHHHHHHHHHHHS----STTHHHHHHHHHHH
T ss_pred             -------------------------------------------chh--HHHHHhhhhhhhhh----HHHHHHHHHHHHHh
Confidence                                                       000  00011111111111    12223344555556


Q ss_pred             HHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHH
Q psy3048         266 ADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEIS  345 (367)
Q Consensus       266 ~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~  345 (367)
                      .+.+..+.+.....+...+.+.+.+++......++.++|.++|++ +.+.   +...+|+++ +..+|+||||+++++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~-v~~~---~~~~iRi~~-~~~~t~edid~~v~~l~  336 (343)
T d1m6sa_         262 ALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVL-ANAV---SDTEIRLVT-HKDVSRNDIEEALNIFE  336 (343)
T ss_dssp             HHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEE-CEEE---ETTEEEEEC-CTTSCHHHHHHHHHHHH
T ss_pred             hhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCE-EecC---CCCEEEEEC-CCCCCHHHHHHHHHHHH
Confidence            666655555544455677888888876444567899999999954 3332   335799954 68889999999999999


Q ss_pred             HHHHHh
Q psy3048         346 HQSSEM  351 (367)
Q Consensus       346 ~~~~~~  351 (367)
                      ++++++
T Consensus       337 ~v~~~~  342 (343)
T d1m6sa_         337 KLFRKF  342 (343)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.54  E-value=1.8e-13  Score=127.40  Aligned_cols=248  Identities=16%  Similarity=0.171  Sum_probs=163.4

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..+......+.    ..|+++.+++..     |+++++++++++++      +|.+..++|++..+.||++|
T Consensus        98 Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~~~t~------lv~~Esp~NP~l~v~Di~~i  166 (392)
T d1gc0a_          98 GDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATR------VIYFESPANPNMHMADIAGV  166 (392)
T ss_dssp             TCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHH
T ss_pred             CCeeecccccchhhhhhhhhhhccCCcccccCCcc-----CHHHHHHhCCCCCe------EEEecccccceeeecchHHH
Confidence            3355556666666655544    368999998765     89999999998884      88899999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++||++|+.++||.+++...+.- +.+   .|   +|++..|..|++++-.. .|..++.+...+.+...   ..+.. 
T Consensus       167 ~~ia~~~g~~~vvDnT~atP~~~~-Pl~---~G---aDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~---~~~~~-  235 (392)
T d1gc0a_         167 AKIARKHGATVVVDNTYCTPYLQR-PLE---LG---ADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRL---QGLKD-  235 (392)
T ss_dssp             HHHHGGGTCEEEEECTTTHHHHCC-GGG---GT---CSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHH---THHHH-
T ss_pred             HHHHHhcCCEEEEecCccCccccC-hHH---hC---CCEEEEecceeecCCcccccccccchhHHHHHHHH---HHHHH-
Confidence            999999999999999997665532 222   24   49999999999986432 33333333333322100   00000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                  ..|....+...|..+  .|.+-+..++++..+++..
T Consensus       236 --------------------------------------------~~G~~~~p~da~ll~--rgl~TL~lRm~~~~~nA~~  269 (392)
T d1gc0a_         236 --------------------------------------------MTGAVLSPHDAALLM--RGIKTLNLRMDRHCANAQV  269 (392)
T ss_dssp             --------------------------------------------HTCCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccCCcCChhhHHHHH--hccccHHHHHHHHHHHHHH
Confidence                                                        000011224444433  4677888999999999999


Q ss_pred             HHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEeE--
Q psy3048         265 FADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKAS--  316 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~~--  316 (367)
                      +.+.|+++|.++ |..|     |           ..++++|.+.+..+....+++.|.-  .+       ...+.|..  
T Consensus       270 lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~t  349 (392)
T d1gc0a_         270 LAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT  349 (392)
T ss_dssp             HHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTT
T ss_pred             HHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccccc
Confidence            999999999876 4443     1           2578899987533334566776542  11       11111100  


Q ss_pred             ---E-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         317 ---F-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       317 ---~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                         .       .  .++.+|+|+.     -||++.+++.|++.++.
T Consensus       350 h~~~~~e~r~~~Gi~~~liRlSVG-----lEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         350 HSSYTPEERAHYGISEGLVRLSVG-----LEDIDDLLADVQQALKA  390 (392)
T ss_dssp             TSSSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHcCCCcCeEEEEee-----eCCHHHHHHHHHHHHHh
Confidence               0       0  2458999764     26788888988888764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.53  E-value=8.7e-14  Score=128.29  Aligned_cols=254  Identities=13%  Similarity=0.052  Sum_probs=167.3

Q ss_pred             cCCcchhHHHHHHhC--CcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhc
Q psy3048          36 SDQSNSSVEKSAIIG--DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEY  112 (367)
Q Consensus        36 s~~~H~s~~~~~~~~--g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~  112 (367)
                      +.-+|.+........  ..+++..+.+ +++.+|.+++++..++..     |.+|++..  +..-...|++++.+||++.
T Consensus       118 ~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k-----PklIi~G~--S~y~r~~d~~~~reIad~v  190 (405)
T d1kl1a_         118 SHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVAAA--SAYPRIIDFAKFREIADEV  190 (405)
T ss_dssp             GGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEECC--SSCCSCCCHHHHHHHHHHH
T ss_pred             ccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhC-----cceEEecc--cccccccChHHHHHHHhhh
Confidence            456777754433332  2456666676 568999999999998765     66665543  3344556899999999999


Q ss_pred             CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQS  192 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~  192 (367)
                      |+++++|.||-.|.+....++.   .++.+|+++.+.||.|.+|.| |++++++ +..++.-.    -++++.+      
T Consensus       191 ga~l~~D~aH~~GLIa~g~~~~---P~~~aDvvt~tThKtlrGPrg-g~I~~~~-~~~~~i~~----avfPg~q------  255 (405)
T d1kl1a_         191 GAYLMVDMAHIAGLVAAGLHPN---PVPYAHFVTTTTHKTLRGPRG-GMILCQE-QFAKQIDK----AIFPGIQ------  255 (405)
T ss_dssp             TCEEEEECTTTHHHHHTTSSCC---STTTCSEEEEESSSTTCCCSC-EEEEECH-HHHHHHHH----HHTTTTC------
T ss_pred             CCEEecchhhHhhhhhhhhcCC---hhhhhhheeccccccccCCCC-ceEEecc-hhHHHHHh----hhCcccc------
Confidence            9999999999888776655443   356789999999999999855 5666654 33322111    1111111      


Q ss_pred             CCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         193 PDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                                                           ++.... ..+...++.......+.+..++..++++.|.+.|.+
T Consensus       256 -------------------------------------ggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~  298 (405)
T d1kl1a_         256 -------------------------------------GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN  298 (405)
T ss_dssp             -------------------------------------SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence                                                 111111 133444555544556788888999999999999988


Q ss_pred             CCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE-------CCeeEEEEEe---cCCCCCHHHHHHH
Q psy3048         272 DDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF-------QGRPFLRFVV---TSPETNQCDVAFA  340 (367)
Q Consensus       272 ~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------~~~~~lRi~~---~~~~~~~edid~l  340 (367)
                      . |+.++.. ...+++...+........+..+.|.+.|+ .+-....       ..+..+|+..   +.....++|++++
T Consensus       299 ~-G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~i  376 (405)
T d1kl1a_         299 E-GFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGI-TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEI  376 (405)
T ss_dssp             T-TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred             C-CceeecCCCccceeeccccccCCcHHHHHHHHHHcCe-EEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHH
Confidence            6 9999853 46778888775422233444555666674 3332211       1235799954   3455679999999


Q ss_pred             HHHHHHHHHH
Q psy3048         341 WNEISHQSSE  350 (367)
Q Consensus       341 i~~l~~~~~~  350 (367)
                      .+.|.++++.
T Consensus       377 a~~I~~~l~~  386 (405)
T d1kl1a_         377 AAIIGLVLKN  386 (405)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            9999888753

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=5.4e-14  Score=131.36  Aligned_cols=253  Identities=12%  Similarity=0.029  Sum_probs=158.9

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhHH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELG  106 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I~  106 (367)
                      .|++.+..+......+...|..+..++++  .++.++.+.++....+.+      .+++++.++||||.+   +.+++|+
T Consensus       114 ~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~nP~NPTG~~~s~~~~~~i~  187 (375)
T d1o4sa_         114 EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKT------KAVLINSPNNPTGVVYRREFLEGLV  187 (375)
T ss_dssp             EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             EEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccCc------cEEEEeCCCCCccCCCCHHHHHHHH
Confidence            45556678888888888888888887775  468888888887665554      588899999999998   5677888


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhh-hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~-~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++|++|+++++.|++|+........... ...+...--++..+..|.++ ....+|+++..+. ........... ... 
T Consensus       188 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~-~~~~~~~~~~~-~~~-  264 (375)
T d1o4sa_         188 RLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK-VATAVSKIQSH-TTS-  264 (375)
T ss_dssp             HHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHH-HTC-
T ss_pred             HhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccccc-chhhhhhhhcc-ccc-
Confidence            8999999999999988765443221111 11111112467788999887 4588898887543 22211100000 000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                   .   ............ .........+...+..+.
T Consensus       265 ---------------------------------------------~---~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~  295 (375)
T d1o4sa_         265 ---------------------------------------------C---INTVAQYAALKA-LEVDNSYMVQTFKERKNF  295 (375)
T ss_dssp             ---------------------------------------------S---CCHHHHHHHHHH-TTCCCHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------c---ccccchhhhhhh-cccchhhhHHHHHHHHHH
Confidence                                                         0   001111111221 122334445556667777


Q ss_pred             HHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhc-cCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         265 FADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMS-HKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       265 l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      +.+.|++. |+++..|.....++++++. +  ..++..+|.+ .|++...+..+..++++|+++.   +++++++..++.
T Consensus       296 ~~~~l~~~-g~~~~~p~gg~f~~~~~~~-~--~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~---~~~e~l~~al~r  368 (375)
T d1o4sa_         296 VVERLKKM-GVKFVEPEGAFYLFFKVRG-D--DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDR  368 (375)
T ss_dssp             HHHHHHHT-TCCCCCCSBSSEEEEECSS-C--HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHH
T ss_pred             HHHHHHhc-CceEecCCccEEEEEECCC-C--HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc---CCHHHHHHHHHH
Confidence            88888876 7877655444556677754 2  4566666554 5754444444445679999763   378999999999


Q ss_pred             HHHHHH
Q psy3048         344 ISHQSS  349 (367)
Q Consensus       344 l~~~~~  349 (367)
                      |+++++
T Consensus       369 l~~~l~  374 (375)
T d1o4sa_         369 IEDFLN  374 (375)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998864

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.51  E-value=7e-13  Score=123.40  Aligned_cols=249  Identities=16%  Similarity=0.227  Sum_probs=165.0

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..+......+.    -.|+++.+++..     |++.++++++++++      +|.+..++|++..+.||++|
T Consensus       102 Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~~~Tk------lv~~Esp~NP~l~v~Di~~i  170 (397)
T d1y4ia1         102 GDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMRPETK------VVYIETPANPTLSLVDIETV  170 (397)
T ss_dssp             TCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHH
T ss_pred             CCeeeeecccccccchhhhcccCCCceEeeccCCC-----CHHHHHHhcCCCCc------EEEecCCcccceeecccHHH
Confidence            3355566677777665543    369999999865     88999999988774      88999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++||++|++++||.+.+...+.-+ .+   .|   +|+++.+..|++++-.. .|..++.+.+.+.+..-  .. +...
T Consensus       171 ~~iA~~~gi~~vvDnT~atP~~~~P-l~---~G---aDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~--~~-~~~~  240 (397)
T d1y4ia1         171 AGIAHQQGALLVVDNTFMSPYCQQP-LQ---LG---ADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF--VG-LKDI  240 (397)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTTCCG-GG---GT---CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH--TH-HHHT
T ss_pred             HHHhhcCCceEEecCcccCcccCcc-hh---cC---CCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHH--HH-HHhC
Confidence            9999999999999999876544322 22   24   49999999999987533 33334434433322100  00 0000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                   .|....+...|..+  .|.+-+.-++++..+++..
T Consensus       241 ---------------------------------------------~G~~l~p~~a~l~~--rgl~TL~lRm~~~~~nA~~  273 (397)
T d1y4ia1         241 ---------------------------------------------TGGCMSPFNAWLTL--RGVKTLGIRMERHCENALK  273 (397)
T ss_dssp             ---------------------------------------------TCCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------cCCcCCHHHHHHHH--cCcCcHHHHHHHHHHHHHH
Confidence                                                         01112234455444  3566788899999999999


Q ss_pred             HHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe---
Q psy3048         265 FADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA---  315 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~---  315 (367)
                      +.+.|+++|.++ |..|     |           ..++++|.+.+..+...++.++|.--  +       .....|.   
T Consensus       274 lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~t  353 (397)
T d1y4ia1         274 IARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMT  353 (397)
T ss_dssp             HHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTT
T ss_pred             HHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccccc
Confidence            999999999985 4544     1           35789999876333345666654311  1       1111110   


Q ss_pred             --EE-------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 --SF-------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 --~~-------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                        ..       .  .++.+|+|+.     -||++.+++.|++.+++.
T Consensus       354 h~~~~~e~r~~~Gi~~~liRlsvG-----lEd~~DLi~Dl~~AL~~a  395 (397)
T d1y4ia1         354 HSPVAPEERLKAGITDGLIRLSVG-----LEDPEDIINDLEHAIRKA  395 (397)
T ss_dssp             TSSSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHcCCCcCEEEEEec-----cCCHHHHHHHHHHHHHHh
Confidence              00       0  2458999764     367888899998887753

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1e-12  Score=121.95  Aligned_cols=249  Identities=16%  Similarity=0.146  Sum_probs=165.7

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..+........    ..|.++.+++..     |.++++++++++++      +|.+-.++|++..+.||++|
T Consensus        89 gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~-----d~~~~~~~~~~~t~------~v~~EspsNP~l~v~Di~~i  157 (384)
T d1cs1a_          89 GDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-----DEQALRAALAEKPK------LVLVESPSNPLLRVVDIAKI  157 (384)
T ss_dssp             TCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHHTCCS------EEEEECSCTTTCCCCCHHHH
T ss_pred             cceecccccccchhhhhhhhhhcccccccccccCC-----CHHHHHhhcccccc------EEEEeccccccceeccHHHH
Confidence            4456666667766544433    357777777653     88999999998885      89999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +++||++|++++||.+.+...+.- +..   .|   +|+++.|..|++.+-..  .|.++.+++....+..    .+.  
T Consensus       158 ~~ia~~~g~~~vVDNT~atP~~~~-Pl~---~G---aDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~----~~~--  224 (384)
T d1cs1a_         158 CHLAREVGAVSVVDNTFLSPALQN-PLA---LG---ADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELA----WWA--  224 (384)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTTCC-GGG---GT---CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHH----HHH--
T ss_pred             hhhhhhcCcEEEEeccccCccccc-ccc---cC---CCEEEEccccccccCCCcccccccCCchhhhhhhh----hhh--
Confidence            999999999999999986654432 222   24   59999999999987633  3444444433222110    000  


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                              .    ..+........|..++  |.+-+.-++++..+++.
T Consensus       225 ----------------------------------------~----~~G~~~~p~~a~ll~r--gL~TL~lRm~~~~~nA~  258 (384)
T d1cs1a_         225 ----------------------------------------N----NIGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQ  258 (384)
T ss_dssp             ----------------------------------------H----HHTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred             ----------------------------------------h----hhhhccccccHHHHhh--ccchhHHHHHHHHHHHH
Confidence                                                    0    0001112244454443  67778889999999999


Q ss_pred             HHHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhccC---------cEEEEEeEE
Q psy3048         264 KFADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMSHK---------QIYIIKASF  317 (367)
Q Consensus       264 ~l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~  317 (367)
                      .+.+.|+++|.++ +..|     |           ..++++|.+.+..+...++.+.|.--.         .+.+.|...
T Consensus       259 ~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~  338 (384)
T d1cs1a_         259 AIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATM  338 (384)
T ss_dssp             HHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGT
T ss_pred             HHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceecccccc
Confidence            9999999999885 4444     1           256888988764444456666653211         111221100


Q ss_pred             --------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy3048         318 --------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNL  353 (367)
Q Consensus       318 --------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~~  353 (367)
                                    -.++.+|+|+.     -||++.+++.|++.++.+.+
T Consensus       339 th~~~~~e~r~~~Gi~~~lvRlSvG-----lEd~eDLi~Dl~~AL~aa~~  383 (384)
T d1cs1a_         339 THAGMAPEARAAAGISETLLRISTG-----IEDGEDLIADLENGFRAANK  383 (384)
T ss_dssp             TTTTSCHHHHHHHTCCTTEEEEECC-----SSCHHHHHHHHHHHHHHHTC
T ss_pred             ccccCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHHHHHhcC
Confidence                          02458999764     37899999999999887654

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.51  E-value=7.2e-13  Score=127.24  Aligned_cols=271  Identities=11%  Similarity=0.087  Sum_probs=147.7

Q ss_pred             EEecCCcchhHHHHHHhCCcceEEEec----------CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc-cc--
Q psy3048          33 AYASDQSNSSVEKSAIIGDVPVRQLRS----------DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-AF--   99 (367)
Q Consensus        33 v~~s~~~H~s~~~~~~~~g~~v~~v~~----------~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-~i--   99 (367)
                      ++.+..-|.+....+...|..++.+..          +..+.+|+++|++++++..+.  .+.++++...++..| .+  
T Consensus       124 ~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~  201 (465)
T d1ax4a_         124 VFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVS  201 (465)
T ss_dssp             EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCC
T ss_pred             EEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceecCC
Confidence            334444555565566677877766532          246889999999999876532  123444444444333 32  


Q ss_pred             -CChhhHHHHHhhcCcEEEEecccccccccCh----------hhhhhhCC-CCCcceeeeccccccccCCcceeEEEecc
Q psy3048         100 -DNLEELGPICQEYNIWLHVDAAYAGSALLLP----------EYAHLKRG-LEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus       100 -~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~----------~~~~~~~~-~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                       +++++|.++|++||+++|+|+||..+.....          ........ ...+|+++++.||.+.+| +.|+++.++.
T Consensus       202 ~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~-~~g~l~~~~~  280 (465)
T d1ax4a_         202 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN-IGGLVAIRDN  280 (465)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS-SCEEEEESSC
T ss_pred             HHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccc-cceeEeecch
Confidence             4678999999999999999999864322100          00000000 123699999999998866 5578887654


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG  247 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (367)
                      ..+.....  .........      ..+                                  .+  ..+.. .+++....
T Consensus       281 ~~~~~~~~--~~~~~~~~~------~~~----------------------------------~~--~~~~~-~~a~~~~~  315 (465)
T d1ax4a_         281 EEIFTLAR--QRCVPMEGF------VTY----------------------------------GG--LAGRD-MAAMVQGL  315 (465)
T ss_dssp             HHHHHHHH--HHHHHHTCS------TTT----------------------------------TT--CCHHH-HHHHHHHH
T ss_pred             HHHHHhhh--ccccccccC------CCc----------------------------------ch--hhHHH-HHHHhhhh
Confidence            32211100  000000000      000                                  00  00111 11111111


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-------chHHHH-HHHHHhccCcEEEEEe---
Q psy3048         248 LK-GLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-------NDLTNQ-LYERLMSHKQIYIIKA---  315 (367)
Q Consensus       248 ~~-g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~~~~~~-l~~~L~~~g~~~~~~~---  315 (367)
                      .+ ..++..++..+.++++.++|+++ |+.++.++....+.+.....       ...... ..+.+.+.|+..+...   
T Consensus       316 ~e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~  394 (465)
T d1ax4a_         316 EEGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFL  394 (465)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccc
Confidence            11 12445566777889999999886 67766665555554443210       111222 3333445553222111   


Q ss_pred             ----------EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 ----------SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 ----------~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                                .......+|+++.....|+||||+++++|+++.++..
T Consensus       395 ~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~  441 (465)
T d1ax4a_         395 LGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA  441 (465)
T ss_dssp             HCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred             cccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                      0012347999754344589999999999999988754

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.2e-13  Score=129.88  Aligned_cols=272  Identities=14%  Similarity=0.071  Sum_probs=149.9

Q ss_pred             EEecCCcchhHHHHHHhCCcceEEEecCC----------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcc-ccc--
Q psy3048          33 AYASDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGT-CAF--   99 (367)
Q Consensus        33 v~~s~~~H~s~~~~~~~~g~~v~~v~~~~----------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~-G~i--   99 (367)
                      +..+...|.....++...|+.++.++.+.          .+.+|+++|++++++..+..  ..++++...++.. |.+  
T Consensus       125 i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~--~~~i~~e~~~~~~gg~~~~  202 (467)
T d2v1pa1         125 VAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN--VPYIVATITSNSAGGQPVS  202 (467)
T ss_dssp             EEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG--CCCEEEESSBCGGGCBCCC
T ss_pred             EEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccc--cceeeecceeeccccccCC
Confidence            44566778888888889999999887652          46899999999998765321  1234444434433 333  


Q ss_pred             -CChhhHHHHHhhcCcEEEEecccccccccChhhh----------hhhC-CCCCcceeeeccccccccCCcceeEEEecc
Q psy3048         100 -DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA----------HLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWVKNA  167 (367)
Q Consensus       100 -~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~----------~~~~-~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~  167 (367)
                       +++++|.++||+||+++|+|+||.++........          .... -...+|+++++.||.+.+| ..|++..++.
T Consensus       203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~-~gg~i~~~~~  281 (467)
T d2v1pa1         203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP-MGGLLCMKDD  281 (467)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS-SCEEEEECSG
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC-CceeEEecch
Confidence             5788999999999999999999865432110000          0000 0235699999999999876 4456666554


Q ss_pred             hhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhh
Q psy3048         168 NHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYG  247 (367)
Q Consensus       168 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (367)
                      ....... ...........     ...+                                  .+  .....+.+....+.
T Consensus       282 ~~~~~~~-~~~~~~~~~~~-----~~~~----------------------------------~~--~~~~~~~a~~~~~~  319 (467)
T d2v1pa1         282 SFFDVYT-ECRTLCVVQEG-----FPTY----------------------------------GG--LEGGAMERLAVGLY  319 (467)
T ss_dssp             GGHHHHH-HHHHHHHHTTS-----SCCC----------------------------------CC--CCHHHHHHHHHHHH
T ss_pred             hhhhHHH-hhccccccccc-----Ccch----------------------------------hh--hHHHHHHHHHHHhH
Confidence            3221110 00000000000     0000                                  00  00112222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEE----EcCC---chHHHH-HHHHHhccCcEEEEEe----
Q psy3048         248 LKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFR----LKGD---NDLTNQ-LYERLMSHKQIYIIKA----  315 (367)
Q Consensus       248 ~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~----~~~~---~~~~~~-l~~~L~~~g~~~~~~~----  315 (367)
                      .....+..++..++++|+.++|.+. ++.+..+. .+.+...    ++..   ...... ..+.+.+.|+..+..+    
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~  397 (467)
T d2v1pa1         320 DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAG-GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL  397 (467)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEEEEC-SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhc-CCcccCCC-ccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeeccccccc
Confidence            2223456667788999999999886 44443222 1222211    1110   111222 3333344553221110    


Q ss_pred             ---------EECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 ---------SFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 ---------~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                               .......+|+++.....|+||||+++++|+++.++.
T Consensus       398 ~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~  442 (467)
T d2v1pa1         398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA  442 (467)
T ss_dssp             CBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred             ccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                     112345799976555568999999999999998754

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.50  E-value=1.1e-12  Score=122.32  Aligned_cols=269  Identities=14%  Similarity=0.085  Sum_probs=164.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.-.|+++..++.+...++...|+++++++++++........+......++.   ..+|+++   +..|...|+++|.++
T Consensus        60 ~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~---~~aii~~---~~~G~~~d~~~i~~~  133 (374)
T d1o69a_          60 QDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKK---PKALILT---HLYGNAAKMDEIVEI  133 (374)
T ss_dssp             TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSC---CCEEEEE---CGGGCCCCHHHHHHH
T ss_pred             CcCEEEeCCcchHhhHHHHhhccceeEecccccccccccccccccchhcccc---ccccccc---ccccchhhhHHHHHH
Confidence            3446788899999999999999999999999865444444433333322211   2355555   347999999999999


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPM  188 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~  188 (367)
                      |+++|++++.|+||+.+...-...   ....+.+.++++...|.+.+. |.|++++.+.+...+.....    ..+..  
T Consensus       134 ~~~~~i~vIED~a~a~g~~~~~~~---~G~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~----~~g~~--  203 (374)
T d1o69a_         134 CKENDIVLIEDAAEALGSFYKNKA---LGTFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYS----TQARE--  203 (374)
T ss_dssp             HHHTTCEEEEECTTCTTCEETTEE---TTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHT----BTCCC--
T ss_pred             hhccCcchhhhhhhhhcceECCee---cCCCCceEEEeccCccccccc-cceeehhhhHHHHHhhcccc----ccccc--
Confidence            999999999999998765432221   111233456666667999875 55888887776554432111    00000  


Q ss_pred             CCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy3048         189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL  268 (367)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~  268 (367)
                        ....+                              .....+-.+++..+.+++...+.+.+.++.++.+++++++.+.
T Consensus       204 --~~~~~------------------------------~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~  251 (374)
T d1o69a_         204 --NCLHY------------------------------EHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEF  251 (374)
T ss_dssp             --SSSSC------------------------------CCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             --ccccc------------------------------ccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhh
Confidence              00000                              0111222344455666666666777888899999999999999


Q ss_pred             hcCCCCeEEeCCC-----C--ceeEEEE--------------Ec----CCchHHHHHHHHHhccCcEEEEEe--------
Q psy3048         269 VEKDDRFELVCPP-----S--MGLVCFR--------------LK----GDNDLTNQLYERLMSHKQIYIIKA--------  315 (367)
Q Consensus       269 L~~~~g~~~~~~~-----~--~~~v~f~--------------~~----~~~~~~~~l~~~L~~~g~~~~~~~--------  315 (367)
                      |.+...+  ..++     .  ...+.+.              +.    .......++.+.|.++|+- +.+.        
T Consensus       252 L~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~-~r~~y~pl~~~~  328 (374)
T d1o69a_         252 LGEYFSF--LDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIE-TRPLWKAMHTQE  328 (374)
T ss_dssp             HTTTEEC--CCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCC-CBCCCCCGGGCG
T ss_pred             ccccccc--cccccCCCCChhheeeeeccccccccccccccccchhhccchhhHHHHHHHHHHCCCC-EEEeCcchhhCh
Confidence            9875321  1111     0  1111110              00    0012345788888888742 1100        


Q ss_pred             --------EEC-----CeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         316 --------SFQ-----GRPFLRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       316 --------~~~-----~~~~lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                              ...     ....+.+ +.++..|++||+++++.|.++++
T Consensus       329 ~~~~~~~~~~pna~~~~~~~i~L-P~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         329 VFKGAKAYLNGNSELFFQKGICL-PSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             GGTTCEEEECSHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             hhhcCCCCCCHHHHHHHhCEEEC-cCCCCCCHHHHHHHHHHHHHHHC
Confidence                    000     0224666 67888999999999999998763

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.49  E-value=4.4e-13  Score=128.32  Aligned_cols=272  Identities=11%  Similarity=0.080  Sum_probs=151.6

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC----------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc-c
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-A   98 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~----------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-~   98 (367)
                      .-+|++... .++....+...|+..+.+..+          .++.+|+++|++++++.++.  ...++++..++|..| .
T Consensus       114 Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~  190 (456)
T d1c7ga_         114 GQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLAGGQ  190 (456)
T ss_dssp             TEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSB
T ss_pred             CCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeecccccccc
Confidence            345555432 344444556678777665432          35889999999999987642  123666666666655 3


Q ss_pred             c---CChhhHHHHHhhcCcEEEEecccccccccC-----hh-----hhhhhC-CCCCcceeeeccccccccCCcceeEEE
Q psy3048          99 F---DNLEELGPICQEYNIWLHVDAAYAGSALLL-----PE-----YAHLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWV  164 (367)
Q Consensus        99 i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~-----~~-----~~~~~~-~~~~~D~~~~~~hK~l~~p~g~g~l~~  164 (367)
                      +   +++++|.++|++||+.+|+|+|+..+....     ..     ...... -.+.+|+++++.||.+.+|.| |+++.
T Consensus       191 ~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~  269 (456)
T d1c7ga_         191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCM  269 (456)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEE
T ss_pred             eecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEc
Confidence            3   578889999999999999999986532110     00     000000 013579999999999997644 77777


Q ss_pred             ecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH
Q psy3048         165 KNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR  244 (367)
Q Consensus       165 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (367)
                      ++...+++......  ...+..       .+                       ++       . .+  ....++...+.
T Consensus       270 ~~~~l~~~~r~~~~--~~~g~~-------~~-----------------------g~-------~-~~--~~~~a~a~~l~  307 (456)
T d1c7ga_         270 NDEEMFSAAKELVV--VYEGMP-------SY-----------------------GG-------L-AG--RDMEAMAIGLR  307 (456)
T ss_dssp             SCHHHHHHHHHHHH--HHTCCT-------TT-----------------------TT-------C-CH--HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcc--ccCCCc-------cc-----------------------ch-------h-hH--HHHHHHHHHHH
Confidence            76654443211000  001000       00                       00       0 00  01122222222


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEE----cC--Cch-HHHHHHHHH-hccCcEEEEEeE
Q psy3048         245 SYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRL----KG--DND-LTNQLYERL-MSHKQIYIIKAS  316 (367)
Q Consensus       245 ~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~----~~--~~~-~~~~l~~~L-~~~g~~~~~~~~  316 (367)
                      ...  + .+..++..+.++||.++|.+. |+.++.++..+.+....    +.  ... ....+...| .+.|+..+..+.
T Consensus       308 e~~--~-~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~  383 (456)
T d1c7ga_         308 EAM--Q-YEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGI  383 (456)
T ss_dssp             HHT--C-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESH
T ss_pred             Hhc--C-HHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCc
Confidence            211  1 234456677788999999887 77766665544444321    10  011 223444444 444532222110


Q ss_pred             -------------ECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 -------------FQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 -------------~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                                   ......+|+++.....|++|||+++++|+++.++.
T Consensus       384 ~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~  431 (456)
T d1c7ga_         384 VSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK  431 (456)
T ss_dssp             HHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTG
T ss_pred             cccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhh
Confidence                         01233699987544448999999999999997753

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=5.9e-13  Score=123.54  Aligned_cols=245  Identities=15%  Similarity=0.200  Sum_probs=163.2

Q ss_pred             eEEEecCCcchhHHHHHHh----CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~~----~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..+.......+.    .|+++.+++..     +++++++++++.++      +|.+..++|++..+.||++|+
T Consensus        88 d~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~t~------li~~EtpsNP~l~v~Di~~i~  156 (380)
T d1ibja_          88 EEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQTK------LVWLESPTNPRQQISDIRKIS  156 (380)
T ss_dssp             CEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSSEE------EEEECSSCTTTCCCCCHHHHH
T ss_pred             CEEEEEecccccccchhhhhhccccccccccCcc-----hHHHHHHHhccCcc------EEEeccccccccccccHHHHH
Confidence            3455667778777666543    58888888754     88999999988774      899999999999999999999


Q ss_pred             HHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       107 ~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++||++|++++||.+++...+.- +.+   .|   +|+++.|..|++.+-..  .|.+..++.....+...    +. . 
T Consensus       157 ~iA~~~g~~~vVDnT~atP~~~~-Pl~---~G---aDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~----~~-~-  223 (380)
T d1ibja_         157 EMAHAQGALVLVDNSIMSPVLSR-PLE---LG---ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF----LQ-N-  223 (380)
T ss_dssp             HHHHTTTCEEEEECTTTCTTTCC-GGG---TT---CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH----HH-H-
T ss_pred             HHHHHcCCeEEeecccccccccc-ccc---cC---CCEEEecccceeccccCccccccccchhhHHHHHHh----hc-c-
Confidence            99999999999999987654432 222   23   59999999999987643  34444443332222100    00 0 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                  ..+....+...|..+  .|.+-+..+++++.+++..
T Consensus       224 --------------------------------------------~~G~~l~p~~a~ll~--rgl~Tl~lRm~~~~~nA~~  257 (380)
T d1ibja_         224 --------------------------------------------SEGSGLAPFDCWLCL--RGIKTMALRIEKQQENARK  257 (380)
T ss_dssp             --------------------------------------------HTTCBCCHHHHHHHH--HHHTTHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccCCcCCHHHHHHHH--hcchhhhhhHHHHHHHHHH
Confidence                                                        001111234444444  3677888999999999999


Q ss_pred             HHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEe---
Q psy3048         265 FADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKA---  315 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~---  315 (367)
                      +.+.|+++|.++ +..|     |           ..++++|.+.+ .....++.+.|.-  .+       ...+.|.   
T Consensus       258 lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~-~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~t  336 (380)
T d1ibja_         258 IAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS-VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMS  336 (380)
T ss_dssp             HHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC-HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTT
T ss_pred             HHHHHHhCCCeeEEeccccccCccccccccccccccccccccccH-HHHHHHHHHhCCcCeEeeccCCccccccCchhhh
Confidence            999999999875 4443     1           24677776553 4445567776631  11       1111111   


Q ss_pred             --EE----C-----CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 --SF----Q-----GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 --~~----~-----~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                        ..    +     .++.+|+|+.     -||.+.+++.|++.++.+
T Consensus       337 h~~~~~e~r~~~Gi~~~lvRlSvG-----lE~~eDLi~Dl~qAl~~l  378 (380)
T d1ibja_         337 HASIPAEVREARGLTEDLVRISAG-----IEDVDDLISDLDIAFKTF  378 (380)
T ss_dssp             TCSCCSSSSSSSSCCTTCEEEECC-----SSCHHHHHHHHHHHHHSC
T ss_pred             hhcCCHHHHHHcCCCcCeEEEEec-----cCCHHHHHHHHHHHHHhc
Confidence              00    0     2458999764     267888999999988753

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.4e-13  Score=127.04  Aligned_cols=261  Identities=8%  Similarity=0.014  Sum_probs=159.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC------------CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccc
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD------------DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC   97 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~------------~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G   97 (367)
                      .-.|++.+..+......+...|++++.++.+            .++.+|.+++.....+.+      .+++++.++|+||
T Consensus       112 g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~i~~~~p~NPtG  185 (418)
T d1w7la_         112 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRT------KALVLNTPNNPLG  185 (418)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTE------EEEEEESSCTTTC
T ss_pred             CceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhccccccc------cceeccCcCCccc
Confidence            4556666778888888888899988887753            245677777776655544      5888999999999


Q ss_pred             cc---CChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccccC-CcceeEEEecchhhh
Q psy3048          98 AF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLT  171 (367)
Q Consensus        98 ~i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~  171 (367)
                      .+   +.+++|+++|++|+++++.|++|....+.......  .+.+...-.++..+..|.+..| ..+|+++..+. .+.
T Consensus       186 ~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~-~~~  264 (418)
T d1w7la_         186 KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDH-IMK  264 (418)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHH-HHH
T ss_pred             ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchh-hhh
Confidence            88   57788999999999999999999775543221111  0111111146677788977654 78898887432 222


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH------
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS------  245 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------  245 (367)
                      ....    ......         +                                  .........+..++..      
T Consensus       265 ~l~~----~~~~~~---------~----------------------------------~~~~~~q~~~~~~l~~~~~~~~  297 (418)
T d1w7la_         265 HLRT----VHQNSV---------F----------------------------------HCPTQSQAAVAESFEREQLLFR  297 (418)
T ss_dssp             HHHH----HHHTTT---------S----------------------------------CCCHHHHHHHHHHHHHHHHTTT
T ss_pred             hhcc----cccccc---------c----------------------------------cccchhhHHHHHHhhhcccccc
Confidence            1100    000000         0                                  0000011111111211      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcC------------CchHHHHHHHHHhccCcEEEE
Q psy3048         246 YGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKG------------DNDLTNQLYERLMSHKQIYII  313 (367)
Q Consensus       246 ~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~  313 (367)
                      ...+.+....++..+.++++.+.|+++ |+++..|.....+.++++.            ......+++++|.++..+.+.
T Consensus       298 ~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~  376 (418)
T d1w7la_         298 QPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAI  376 (418)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECE
T ss_pred             ccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEE
Confidence            112345666677788888899999987 8887766555555555531            022345677776655334444


Q ss_pred             EeEE--------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         314 KASF--------QGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       314 ~~~~--------~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      |+..        .+.+++|||+.   +++++++.++++|+++.
T Consensus       377 PG~~F~~~~~~~~~~~~iRis~~---~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         377 PVSIFYSVPHQKHFDHYIRFCFV---KDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             EGGGGSCHHHHTTSCSEEEEECC---CCHHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCccCCCCCEEEEEEc---CCHHHHHHHHHHHHHHh
Confidence            4322        23579999763   37889999999998874

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.47  E-value=3.1e-14  Score=131.99  Aligned_cols=212  Identities=9%  Similarity=-0.066  Sum_probs=114.4

Q ss_pred             EecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecch
Q psy3048          89 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNAN  168 (367)
Q Consensus        89 ~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~  168 (367)
                      .++.+|.+|.+.|+++|+++||++|++++||++++.+..+.+..++      .+|+++++.||+  .|++.|+++.+. .
T Consensus       142 ~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~------~vd~~~~~~~k~--~~~~~~~~~~~~-~  212 (360)
T d1w23a_         142 DAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF------GMIYAGAQKNLG--PSGVTVVIVKKD-L  212 (360)
T ss_dssp             EEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC------SEEEEETTTTTS--CTTCEEEEEEHH-H
T ss_pred             cceeEecCCccccceeeeeccccceeeEEeeccccccccccccccc------cceEEeeccccc--cCCcceeeEech-h
Confidence            3455678999999999999999999999999999988876654222      337777777765  455566655532 2


Q ss_pred             hhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccH--HHHHHHHHHh
Q psy3048         169 HLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA--LKLWMTLRSY  246 (367)
Q Consensus       169 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~  246 (367)
                      ..+.. .....+.....              +           .....       ...+.. ...+..  ......+...
T Consensus       213 ~~~~~-~~~~~~~~~~~--------------~-----------~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~  258 (360)
T d1w23a_         213 LNTKV-EQVPTMLQYAT--------------H-----------IKSDS-------LYNTPP-TFSIYMLRNVLDWIKDLG  258 (360)
T ss_dssp             HCSCC-TTCCGGGCHHH--------------H-----------HHTTT-------CSSCCC-HHHHHHHHHHHHHHHHTT
T ss_pred             hhccc-ccCCcchhhhh--------------h-----------hhhhh-------hccccc-ceeeechhHHHHHHhhhh
Confidence            11111 11111100000              0           00000       000000 000011  1111112222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeC-CC---CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeE
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDRFELVC-PP---SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPF  322 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~-~~---~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~  322 (367)
                      +.....   ++....+............+..+. .+   ..++++|++++ ....+++.+.|.++|+.... + +..-+.
T Consensus       259 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~-~~~~~~~~~~l~~~GI~~~~-G-~~~~gg  332 (360)
T d1w23a_         259 GAEAIA---KQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLN-G-HRSVGG  332 (360)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEESCB-C-CTTTCS
T ss_pred             hhHHHH---HHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCC-CccHHHHHHHHHHCCCeeee-C-CCccCc
Confidence            222333   333333344333333333333332 22   24578998875 45567888889989854222 1 111124


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +|+|+ ..++|.|||++|++.++++.|+
T Consensus       333 iRiS~-~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         333 CRASI-YNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             EEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEe-eCCCCHHHHHHHHHHHHHHHhc
Confidence            89974 6778999999999999999775

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.46  E-value=2.8e-13  Score=128.44  Aligned_cols=262  Identities=12%  Similarity=0.040  Sum_probs=162.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCC----------CCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccc
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA   98 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~----------~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~   98 (367)
                      +.-.|++.+..+..+...+...|.+++.|+++.          .+..++++++++....+      .+++++.++|+||.
T Consensus       113 ~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~p~NPtG~  186 (418)
T d2r5ea1         113 EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT------KMIIINTPHNPLGK  186 (418)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTE------EEEEEESSCTTTCC
T ss_pred             cccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccc------cceecCCcCccccc
Confidence            345566777899999999999999999988742          24677888887765544      58888999999999


Q ss_pred             c---CChhhHHHHHhhcCcEEEEecccccccccChhhhh--hhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhh
Q psy3048          99 F---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTN  172 (367)
Q Consensus        99 i---~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~--~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~  172 (367)
                      +   +.+++|+++|++||++++.|++|....+.......  .+.+...--++..+..|.++ .+..+|+++..+. .+..
T Consensus       187 ~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~-~i~~  265 (418)
T d2r5ea1         187 VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKN  265 (418)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHH-HHHH
T ss_pred             cccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccch-hhhh
Confidence            8   45677888999999999999999765442211111  11111111355567788886 4578898777432 2221


Q ss_pred             hccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHH------h
Q psy3048         173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRS------Y  246 (367)
Q Consensus       173 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~  246 (367)
                      .... .....            +                               .  .+. ..+..+...+..      .
T Consensus       266 ~~~~-~~~~~------------~-------------------------------~--~~~-~~q~a~~~~l~~~~~~~~~  298 (418)
T d2r5ea1         266 LQMV-HQNCV------------Y-------------------------------T--CAT-PIQEAIAVGFETELKRLKS  298 (418)
T ss_dssp             HHHH-HTTTT------------C-------------------------------S--CCH-HHHHHHHHHHHHHHTTTTS
T ss_pred             hhhc-ccccc------------c-------------------------------c--ccc-chhhhcccccccccccccc
Confidence            1000 00000            0                               0  000 001111111111      1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcC-----------CchHHHHHHHHHhccCcEEEEEe
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKG-----------DNDLTNQLYERLMSHKQIYIIKA  315 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~-----------~~~~~~~l~~~L~~~g~~~~~~~  315 (367)
                      ..+.+++..++....++++.+.|+++ |+.+..|.....++.++..           ......++++.|.++..+.+.|+
T Consensus       299 ~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG  377 (418)
T d2r5ea1         299 PECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPP  377 (418)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCG
T ss_pred             chhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCc
Confidence            13346677777888889999999987 8887666555555555532           12245678887776633444443


Q ss_pred             E-EC-------CeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         316 S-FQ-------GRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       316 ~-~~-------~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      . +.       +++++|+++.   .++++++..+++|++++
T Consensus       378 ~~F~~~~~~~~g~~~iRis~~---~~~e~l~~a~~rl~~~l  415 (418)
T d2r5ea1         378 SAFYSEPNKHLGEDFVRYCFF---KKDENLQKAAEILRKWK  415 (418)
T ss_dssp             GGGSCGGGHHHHTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCccCCCCEEEEEec---CCHHHHHHHHHHHHHHH
Confidence            2 11       2468999763   36899999999998874

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.45  E-value=3.4e-13  Score=121.30  Aligned_cols=259  Identities=17%  Similarity=0.079  Sum_probs=146.3

Q ss_pred             ceEEEecCCcchhHHHHHHh--CCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAII--GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~--~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.++.....|.+.......  .+.....+. ......+.+...++..........+..++++...+..|.+   +++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (340)
T d1svva_          76 WEAVIATQLGHISTHETGAIEATGHKVVTAP-CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELED  154 (340)
T ss_dssp             TEEEEEETTSHHHHSSTTHHHHTTCCEEEEC-CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHH
T ss_pred             ccccccccccceeeeecccccccceeeeecc-cccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhh
Confidence            33444555566665443322  222333333 2345556666666665544433334455555555666665   45677


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhhhC-CCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCcccccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~-~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      +.++|+++|.++++|++++++.+..+....... .....+...+.+.|....+  .+..............   ......
T Consensus       155 ~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~  229 (340)
T d1svva_         155 ISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF--GEALIILNDALKPNAR---HLIKQR  229 (340)
T ss_dssp             HHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS--CEEEEECSGGGCTTHH---HHHHHT
T ss_pred             hhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc--cccccccchhhhhhhh---hhcccc
Confidence            789999999999999999765543321110000 0001245555556554432  1222221111110000   000000


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                      .                                             ...........+++..+...+.....++...+++
T Consensus       230 ~---------------------------------------------~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~  264 (340)
T d1svva_         230 G---------------------------------------------ALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAA  264 (340)
T ss_dssp             T---------------------------------------------CCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             c---------------------------------------------CccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            0                                             0000001122233334455667778888899999


Q ss_pred             HHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHH
Q psy3048         264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNE  343 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~  343 (367)
                      ++.+.|+.. |++++.|++.+++.+.++      .+..++|.+++.+...+....+++++|+++ ++++|++|||+++++
T Consensus       265 ~~~~~l~~~-g~~~~~p~~~~~v~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~-~~~~t~edid~~l~~  336 (340)
T d1svva_         265 ILKAGLEAC-GIRLAWPSASNQLFPILE------NTMIAELNNDFDMYTVEPLKDGTCIMRLCT-SWATEEKECHRFVEV  336 (340)
T ss_dssp             HHHHHHHHT-TCCBSSCCSSSEECBEEE------HHHHHHHTTTEECEEEEEETTTEEEEEEEC-CTTCCHHHHHHHHHH
T ss_pred             hhHHHHhcC-CCeeecCCCceEEEEeCC------HHHHHHHHHhhhhhcccccCCCCcEEEEEC-CCCCCHHHHHHHHHH
Confidence            999999986 899888888888887764      245666777765544455567789999964 789999999999999


Q ss_pred             HHHH
Q psy3048         344 ISHQ  347 (367)
Q Consensus       344 l~~~  347 (367)
                      |+++
T Consensus       337 l~~l  340 (340)
T d1svva_         337 LKRL  340 (340)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            9874

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.45  E-value=3.2e-12  Score=119.66  Aligned_cols=255  Identities=13%  Similarity=0.073  Sum_probs=155.4

Q ss_pred             cCCcchhHHH-----HHHhCCc--ceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          36 SDQSNSSVEK-----SAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        36 s~~~H~s~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      +.-+|.|.-.     .....|.  ++..+.++ +++.+|.+++++..++..     |.+|++.  .+..-...|++++.+
T Consensus       126 ~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~k-----PklIi~G--~S~y~r~~d~~~~re  198 (463)
T d2a7va1         126 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIAG--TSAYARLIDYARMRE  198 (463)
T ss_dssp             ----------------------------CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEEC--CSSCCSCCCHHHHHH
T ss_pred             CcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcC-----CceEEec--ccccccccCHHHHHH
Confidence            4556766542     2223333  34444555 569999999999988765     6666555  344455568999999


Q ss_pred             HHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchh-------------hhhhc
Q psy3048         108 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH-------------LTNTF  174 (367)
Q Consensus       108 l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~-------------~~~~~  174 (367)
                      ||++.|+++++|.||-++.+....+..   .++.+|+++.+.||.|.+|. .|+++++++..             +.+.+
T Consensus       199 Iad~vga~l~~D~aH~aGLIA~g~~~s---P~~~aDvvt~tTHKTlrGPr-gGiIl~~~~~~~~~~~~~~~~~~~~~~~i  274 (463)
T d2a7va1         199 VCDEVKAHLLADMAHISGLVAAKVIPS---PFKHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRI  274 (463)
T ss_dssp             HHHHTTCEEEEECGGGHHHHHTTSSCC---GGGTCSEEEEESSGGGCSCS-CEEEEEECSEEEEETTTEEEEECCCHHHH
T ss_pred             HhhcccceEEechhhhhHHhhhhhhcC---hhhhhhhhhchhhhhhcCCC-ceEEEEcccccccccccCccchhHHHHHh
Confidence            999999999999999888776554443   24567999999999999885 56777765310             00000


Q ss_pred             cCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCcccccccccccccc-HHHHHHHHHHhhHHHHHH
Q psy3048         175 FTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFR-ALKLWMTLRSYGLKGLQA  253 (367)
Q Consensus       175 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~g~~~  253 (367)
                      .   .-++++.                                           ++++... ..++..+++......+++
T Consensus       275 ~---~avFPg~-------------------------------------------qggph~h~iAa~Ava~~ea~~~~fk~  308 (463)
T d2a7va1         275 N---FAVFPSL-------------------------------------------QGGPHNHAIAAVAVALKQACTPMFRE  308 (463)
T ss_dssp             H---HHHTTTT-------------------------------------------CCSCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred             h---hhcCccc-------------------------------------------chhhhhhhHHHHHHHHHHhcCchHHH
Confidence            0   0011111                                           1112111 133444555544556788


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEeCC-CCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE------CCeeEEEEE
Q psy3048         254 YLRKHISLAKKFADLVEKDDRFELVCP-PSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF------QGRPFLRFV  326 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------~~~~~lRi~  326 (367)
                      ..++..++++.|.+.|.+. |++++.. .+.+++.+.+.+......+..+.|...|+ .+-....      ..+..+||.
T Consensus       309 Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI-~~Nkn~iP~D~~~~~~sGiRiG  386 (463)
T d2a7va1         309 YSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSI-TANKNTCPGDRSAITPGGLRLG  386 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTE-ECEEECCTTCCCSSSCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccC-ccCCccCCCCCCCCCCCceEeC
Confidence            8889999999999999886 9999753 46778888876533334566667777773 3332211      123469995


Q ss_pred             e---cCCCCCHHHHHHHHHHHHHHHH
Q psy3048         327 V---TSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       327 ~---~~~~~~~edid~li~~l~~~~~  349 (367)
                      .   +.....++|+.++.+.|.++++
T Consensus       387 T~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         387 APALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             SHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4   3345668999999999887665

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.43  E-value=3.5e-12  Score=119.79  Aligned_cols=239  Identities=14%  Similarity=0.071  Sum_probs=157.7

Q ss_pred             cceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhcCcEEEEecccccccccCh
Q psy3048          52 VPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLP  130 (367)
Q Consensus        52 ~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~  130 (367)
                      .+....+++ +++.+|.+++++..++..     |.+|++.  .+..-...|++++.+||++.|+++++|.||-+|.+...
T Consensus       153 ~~~~~y~v~~~~~~IDyd~l~~~a~~~k-----PklIi~G--~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g  225 (470)
T d1rv3a_         153 FESMAYKVNPDTGYIDYDRLEENARLFH-----PKLIIAG--TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAG  225 (470)
T ss_dssp             SEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEEC--CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHT
T ss_pred             eEeeEEEEecccCcccHHHHHHHHHhhC-----cceEeec--hhhccccCCHHHHHHHHhccCCeEEecchhhhhhcccc
Confidence            356667776 459999999999987654     6666555  34444556899999999999999999999987776554


Q ss_pred             hhhhhhCCCCCcceeeeccccccccCCcceeEEEecchh-------------hhhhccCCccccccCCCCCCCCCCCchh
Q psy3048         131 EYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH-------------LTNTFFTDRVYLKHTDAPMNTQSPDYTV  197 (367)
Q Consensus       131 ~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~-------------~~~~~~~~~~yl~~~~~~~~~~~~~~~~  197 (367)
                      .+..   .++.+|+++.+.||.|.+|.| |+++++++..             +.+.+.   .-++++             
T Consensus       226 ~~~s---Pl~~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~~~~~~~i~---~avFPg-------------  285 (470)
T d1rv3a_         226 VVPS---PFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEILYNLESLIN---SAVFPG-------------  285 (470)
T ss_dssp             SSCC---GGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCBCCHHHHHH---HHHTTT-------------
T ss_pred             ccCC---hhheeeeeeeehhhhccCCcc-eEEEEccccccccccccchhHHHHHHHHh---hhcCcc-------------
Confidence            4433   245679999999999999866 7778765410             000000   001111             


Q ss_pred             hhhhcccCCCcchhccCCCCCCCCccccccccccccccH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeE
Q psy3048         198 MNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFE  276 (367)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~  276 (367)
                                                    ++++..... .++..++.......+.+..++..++++.|.+.|.+. |+.
T Consensus       286 ------------------------------~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~-G~~  334 (470)
T d1rv3a_         286 ------------------------------LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYK  334 (470)
T ss_dssp             ------------------------------TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ------------------------------ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence                                          112222222 334445555545556888889999999999999886 999


Q ss_pred             EeC-CCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEE------CCeeEEEEEe---cCCCCCHHHHHHHHHHHHH
Q psy3048         277 LVC-PPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASF------QGRPFLRFVV---TSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       277 ~~~-~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~------~~~~~lRi~~---~~~~~~~edid~li~~l~~  346 (367)
                      ++. ....+++.+.+...+....+..+.|.+.|+. +-....      ..+..+||..   +.....++|++++.+.|.+
T Consensus       335 v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~-~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~  413 (470)
T d1rv3a_         335 IVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIA-CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR  413 (470)
T ss_dssp             EGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEE-CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             eccCCCCCceEEEeecccCCcHHHHHHHHHHcCcE-ECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHH
Confidence            975 3466777777654222344566667777743 322111      1145799954   3456678999999999988


Q ss_pred             HHH
Q psy3048         347 QSS  349 (367)
Q Consensus       347 ~~~  349 (367)
                      +++
T Consensus       414 ~l~  416 (470)
T d1rv3a_         414 GIE  416 (470)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=5.1e-12  Score=115.95  Aligned_cols=234  Identities=9%  Similarity=-0.022  Sum_probs=149.7

Q ss_pred             EEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHHHhhc
Q psy3048          33 AYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEY  112 (367)
Q Consensus        33 v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l~~~~  112 (367)
                      |++.+.++..+...++..|++++.|+.++++..+-     +..+.      ..++++++++|++|.+.+.++|.+++ ++
T Consensus        99 v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~-----~~~~~------~~~l~l~nP~NPtG~~~s~~~l~~~~-~~  166 (334)
T d2f8ja1          99 SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE-----VNVGE------GDVVFIPNPNNPTGHVFEREEIERIL-KT  166 (334)
T ss_dssp             EEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCC-----CCCCT------TEEEEEESSCTTTCCCCCHHHHHHHH-TT
T ss_pred             cccccccccccccchhccCCccccccccccccccc-----ccccc------ceEEEecccccccceeecHHHhhccc-cc
Confidence            45567788888899999999999999986655431     11112      35788899999999999988888865 57


Q ss_pred             CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCC
Q psy3048         113 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQ  191 (367)
Q Consensus       113 gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~  191 (367)
                      ++++++|.++.............  .. .--+++.+..|.++.| ..+|+++.. +.......... .   .  .     
T Consensus       167 ~~~ii~Dd~~~~~~~~~~~~~~~--~~-~~~i~~~S~SK~~~~~G~R~G~~~~~-~~~i~~l~~~~-~---~--~-----  231 (334)
T d2f8ja1         167 GAFVALDEAYYEFHGESYVDFLK--KY-ENLAVIRTFSKAFSLAAQRVGYVVAS-EKFIDAYNRVR-L---P--F-----  231 (334)
T ss_dssp             TCEEEEECTTGGGTCCCCGGGGG--TC-SSEEEEEESTTTSSCTTTCEEEEEEC-HHHHHHHHHHS-C---T--T-----
T ss_pred             eeEEeecccchhhcccccccccc--cC-ceEEEEecCccccchhhhhhhhcccc-hHHHHHHHHhh-c---c--c-----
Confidence            89999999875433322111111  11 1246777889987755 688888874 33232211000 0   0  0     


Q ss_pred             CCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3048         192 SPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK  271 (367)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~  271 (367)
                                                         .  .+ .+....+.+.+.  ..+.+++..++..+.++++.+.|++
T Consensus       232 -----------------------------------~--~s-~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~  271 (334)
T d2f8ja1         232 -----------------------------------N--VS-YVSQMFAKVALD--HREIFEERTKFIVEERERMKSALRE  271 (334)
T ss_dssp             -----------------------------------C--SC-HHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------c--cc-hhhhhhcccccc--cccchhhHHHHHHHHHHHHHHHHHH
Confidence                                               0  00 011111222222  3455677777888888899999998


Q ss_pred             CCCeEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHH
Q psy3048         272 DDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISH  346 (367)
Q Consensus       272 ~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~  346 (367)
                      + |+++. +++.+.+.+.++  .....++.+.|.++|+ .+.+  .  +.++|+++.    +.+|+++++++|++
T Consensus       272 ~-g~~~~-~~~g~f~~~~~~--~~~~~~~~~~L~~~GI-~vr~--~--~~~vRis~g----~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         272 M-GYRIT-DSRGNFVFVFME--KEEKERLLEHLRTKNV-AVRS--F--REGVRITIG----KREENDMILRELEV  333 (334)
T ss_dssp             H-TCEEC-CCCSSEEEEECC--HHHHHHHHHHHHHTTE-ECEE--E--TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred             C-CCeEC-CCCceEEEEECC--CCCHHHHHHHHHHCCC-EECC--C--CCeEEEEcC----CHHHHHHHHHHHhc
Confidence            8 88876 444455555554  3456789999999984 3322  2  358999763    57889999999876

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.41  E-value=1.8e-11  Score=113.82  Aligned_cols=245  Identities=16%  Similarity=0.142  Sum_probs=158.0

Q ss_pred             eEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHH-HHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          31 LVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLT-AVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~-~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      -.|++++..+........    ..|+++.+++..     +.++.++ .+++.+      .+|.+..++|++..+.||++|
T Consensus       107 d~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~~~t------~~v~~EspsNP~l~v~Di~~i  175 (398)
T d1qgna_         107 GHIVTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKKV------NLFFTESPTNPFLRCVDIELV  175 (398)
T ss_dssp             CEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSCE------EEEEEESSCTTTCCCCCHHHH
T ss_pred             ccccccccccchhhhhhccccccccccccccccc-----chhhhhhhhccccc------eEEEccCccccccccchHHHH
Confidence            344555556655544433    368888888643     4454444 445555      488889999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcc-eeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDC-SAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++||++|++++||.+.+...+.- +.+   .|   +|+++.|..|++++.... |..+..+.........    +..  
T Consensus       176 a~ia~~~g~~~vVDnT~atP~~~~-Pl~---~G---aDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~----~~~--  242 (398)
T d1qgna_         176 SKLCHEKGALVCIDGTFATPLNQK-ALA---LG---ADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN----LHH--  242 (398)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTTCC-TTT---TT---CSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH----HHH--
T ss_pred             HHHHhhcCCEEEecceeeccccCC-chh---hC---CCEEEEechhhcCcccceeehhhcchhhhhhhhhh----hcc--
Confidence            999999999999999987654432 211   13   599999999999877442 3334444433322110    000  


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                  ..+....+...|..++  |.+-+.-+++++.+++..
T Consensus       243 --------------------------------------------~~G~~l~p~~a~ll~r--gl~TL~lRm~~~~~nA~~  276 (398)
T d1qgna_         243 --------------------------------------------ILGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALR  276 (398)
T ss_dssp             --------------------------------------------HHCCCCCHHHHHHHHH--HGGGHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------cCCCcCCHHHHHHHHh--cchHHHHHHHHHHHHHHH
Confidence                                                        0011122344454443  667888899999999999


Q ss_pred             HHHHhcCCCCeE-EeCCC----------------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEe--E
Q psy3048         265 FADLVEKDDRFE-LVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKA--S  316 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~--~  316 (367)
                      +.+.|+++|.++ |..|.                ..++++|.+.+..+...++++.|.-  .+       .+.+.|.  .
T Consensus       277 lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~t  356 (398)
T d1qgna_         277 MAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMS  356 (398)
T ss_dssp             HHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHH
T ss_pred             HHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcchhc
Confidence            999999999986 55541                2578889887644455677777642  11       1111110  0


Q ss_pred             E----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         317 F----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       317 ~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      +          .  .++.+|+|+.     -||++.+++.|++.+++
T Consensus       357 h~~~~~~~~~~~Gi~~~liRlSvG-----lEd~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         357 YWDLSQSDRAKYGIMDNLVRFSFG-----VEDFDDLKADILQALDS  397 (398)
T ss_dssp             STTSCHHHHHTTTCCSSEEEEECC-----SSCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHhc
Confidence            0          0  2468999764     36788889999988775

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.3e-12  Score=120.47  Aligned_cols=257  Identities=11%  Similarity=-0.005  Sum_probs=160.3

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC-CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccC---ChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFD---NLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~-~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~---dl~~I  105 (367)
                      .-.|++.+..++.........|+.+..++.+ +++.+|++++++++.+.+      .+++++.++|++|.+.   .+++|
T Consensus       111 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~l~~P~NPtG~v~~~~~~~~l  184 (382)
T d1u08a_         111 GDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT------RLVILNTPHNPSATVWQQADFAAL  184 (382)
T ss_dssp             TCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             cceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhccCc------cEEEECCCCcccccccccccchhh
Confidence            3456666778888888888899888888775 458889999998877665      4788899999999995   45677


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhC---CCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCcccc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKR---GLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~---~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      .++|++++++++.|..+.-..+..........   ..++ -++..+..|.+. .+..+|+++..+ ..+.... ......
T Consensus       185 ~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~SK~~~~pG~RiG~~v~~~-~~~~~~~-~~~~~~  261 (382)
T d1u08a_         185 WQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER-AVAVSSFGKTYHMTGWKVGYCVAPA-PISAEIR-KVHQYL  261 (382)
T ss_dssp             HHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT-EEEEEEHHHHTTCGGGCCEEEECCH-HHHHHHH-HHHHHH
T ss_pred             hhhhccccceeeeecchhhccccccccccccccccccCc-EEEEeeccccccCCcccchhhhccc-hhHHHHH-hhhccc
Confidence            77888999999999987654332211000000   0011 355666677665 448899988743 2222110 000000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                                                                    ..+...+....+..++.. +.+.+.+..++..+.
T Consensus       262 ----------------------------------------------~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~  294 (382)
T d1u08a_         262 ----------------------------------------------TFSVNTPAQLALADMLRA-EPEHYLALPDFYRQK  294 (382)
T ss_dssp             ----------------------------------------------TSSCCHHHHHHHHHHHHH-CTHHHHTHHHHHHHH
T ss_pred             ----------------------------------------------cccccccccccccccccc-chHHHHHHHHHHHhh
Confidence                                                          000111122333333332 345677777778888


Q ss_pred             HHHHHHHhcCCCCeEEeCCCCceeEEEEEcCC-chHHHHHHHHHhccCcEEEEEeEE-----CCeeEEEEEecCCCCCHH
Q psy3048         262 AKKFADLVEKDDRFELVCPPSMGLVCFRLKGD-NDLTNQLYERLMSHKQIYIIKASF-----QGRPFLRFVVTSPETNQC  335 (367)
Q Consensus       262 a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-~~~~~~l~~~L~~~g~~~~~~~~~-----~~~~~lRi~~~~~~~~~e  335 (367)
                      .+.+.+.+... |+++..|.....++++++.. .....++.++|.++..+.+.|+..     .+++++|++++   ++++
T Consensus       295 ~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~---~~~e  370 (382)
T d1u08a_         295 RDILVNALNES-RLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA---KKES  370 (382)
T ss_dssp             HHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC---SCHH
T ss_pred             hhhhhhhhccC-CcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe---CCHH
Confidence            88888888764 88876554444556666532 234567888876553344544322     24568999763   3688


Q ss_pred             HHHHHHHHHHH
Q psy3048         336 DVAFAWNEISH  346 (367)
Q Consensus       336 did~li~~l~~  346 (367)
                      +++..+++|++
T Consensus       371 ~l~~al~RL~~  381 (382)
T d1u08a_         371 TLLAAAERLRQ  381 (382)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            88888887765

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.38  E-value=5.4e-13  Score=125.69  Aligned_cols=259  Identities=15%  Similarity=0.069  Sum_probs=152.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++..+......++..|++++.+++.  +++..+++.+++.+....+   ..++++++.++||||.+   +.+++
T Consensus       123 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iii~~p~NPTG~~~s~e~~~~  199 (401)
T d7aata_         123 SRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLHACAHNPTGVDPRQEQWKE  199 (401)
T ss_dssp             CCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCT---TCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred             CceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCC---ceEEEEecCCCCCccccCCHHHHHH
Confidence            3355667788999999999999999999983  5688899999888764332   23688899999999998   57889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh-----hCCCCCcceeeeccccccccCCcceeEEEecchh--hhhhccCC
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL-----KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH--LTNTFFTD  177 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~--~~~~~~~~  177 (367)
                      |+++|++|+++++.|++|....+........     ........++...+.|+......+|++.......  ..+..   
T Consensus       200 l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~---  276 (401)
T d7aata_         200 LASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVE---  276 (401)
T ss_dssp             HHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHH---
T ss_pred             HHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHH---
Confidence            9999999999999999998766533211110     0111122333334455555668899988865421  11000   


Q ss_pred             ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH-----HhhHHHHH
Q psy3048         178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR-----SYGLKGLQ  252 (367)
Q Consensus       178 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~g~~  252 (367)
                       ..+.....                                       ....+.....+......+.     ......++
T Consensus       277 -~~~~~~~~---------------------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  316 (401)
T d7aata_         277 -SQLKILIR---------------------------------------PMYSNPPMNGARIASLILNTPELRKEWLVEVK  316 (401)
T ss_dssp             -HHHHHHHH---------------------------------------HHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -HHHHHHhh---------------------------------------ccccccchHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             00000000                                       0000000000111111111     11123345


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecC
Q psy3048         253 AYLRKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTS  329 (367)
Q Consensus       253 ~~~~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  329 (367)
                      +..++....++.+.+.|+++..   +..+ ++..+++.+ ++-    +.+++++|.++..+++.++       .||+++ 
T Consensus       317 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~G~F~~-~~l----s~e~~~~L~~e~gV~~~pg-------~Ris~a-  382 (401)
T d7aata_         317 GMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMFCF-TGL----KPEQVERLTKEFSIYMTKD-------GRISVA-  382 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSEEE-CCC----CHHHHHHHHHHHCEECCTT-------CEEEGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcceE-CCCCeEEEe-cCC----CHHHHHHHHHhCCEEECCC-------cEEEec-
Confidence            5666677778888888877632   2222 234444433 221    3456777766654655432       499764 


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy3048         330 PETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       330 ~~~~~edid~li~~l~~~~~  349 (367)
                       ..++++|++++++|.++++
T Consensus       383 -~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         383 -GVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             -GCCTTTHHHHHHHHHHHHC
T ss_pred             -cCCHHHHHHHHHHHHHHhC
Confidence             2467889999999998753

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.37  E-value=3.5e-11  Score=111.97  Aligned_cols=250  Identities=14%  Similarity=0.128  Sum_probs=162.4

Q ss_pred             CceEEEecCCcchhHHHHH----HhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~----~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      +.-.|++++..+.......    .-.|+++.+++..     |++++++++++.++      +|.+..++|++..+.|+++
T Consensus        97 ~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~~~t~------lv~~Etp~NP~l~v~Di~~  165 (394)
T d1e5ea_          97 AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNTK------IVYFETPANPTLKIIDMER  165 (394)
T ss_dssp             TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTEE------EEEEESSCTTTCCCCCHHH
T ss_pred             cccccccccceeehhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhccccc------EEEEeccCCcceeeehhhh
Confidence            3445666777776655443    3479999999875     77899999988874      8889999999999999999


Q ss_pred             HHHHHh-hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCcccc
Q psy3048         105 LGPICQ-EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYL  181 (367)
Q Consensus       105 I~~l~~-~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl  181 (367)
                      ++++++ ++|+.++||.+.+...+. .+.+.   |   +|+++.|..|++++-..  .|.++.+ ........   ..++
T Consensus       166 ~~~~~~~~~g~~vvvDnT~atP~~~-~Pl~~---G---aDiVvhS~TKy~~GhsDv~~G~v~~~-~~~~~~~~---~~~~  234 (394)
T d1e5ea_         166 VCKDAHSQEGVLVIADNTFCSPMIT-NPVDF---G---VDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIR---MVGI  234 (394)
T ss_dssp             HHHHHHTSTTCEEEEECTTTCTTTC-CGGGG---T---CSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHH---HTCC
T ss_pred             hhhccccccCeEEEecCcccCcccC-Cchhc---C---CCEEEechhhhcCCCcccccccccch-hhHHHHHH---HHHH
Confidence            998766 578999999998665443 22222   4   49999999999987533  4444443 33222110   0000


Q ss_pred             ccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3048         182 KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISL  261 (367)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~l  261 (367)
                      ..                                             ..|....+...|.  ...|.+-+.-++++..++
T Consensus       235 ~~---------------------------------------------~~G~~lsp~~a~l--l~rgl~TL~lRm~r~~~n  267 (394)
T d1e5ea_         235 KD---------------------------------------------ITGSVISPHDAWL--ITRGLSTLNIRMKAESEN  267 (394)
T ss_dssp             CC---------------------------------------------CCCCCCCHHHHHH--HHHHHTTHHHHHHHHHHH
T ss_pred             HH---------------------------------------------hhCCCCChHHHHH--HHhhchhHHHHHHHHHHH
Confidence            00                                             0011112244443  344677889999999999


Q ss_pred             HHHHHHHhcCCCCeE-EeCC-----C-----------CceeEEEEEcCCchHHHHHHHHHhc--cC-------cEEEEEe
Q psy3048         262 AKKFADLVEKDDRFE-LVCP-----P-----------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------QIYIIKA  315 (367)
Q Consensus       262 a~~l~~~L~~~~g~~-~~~~-----~-----------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~~~~~~~  315 (367)
                      +..+.+.|+++|.++ |..|     |           ..++++|.+.+..+...++.+.|.-  .+       ...+.|.
T Consensus       268 A~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~  347 (394)
T d1e5ea_         268 AMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPA  347 (394)
T ss_dssp             HHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGG
T ss_pred             HHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECcc
Confidence            999999999999985 5544     1           2467888876532334456665431  11       1111111


Q ss_pred             E--E------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         316 S--F------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       316 ~--~------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .  +            -.++.+|+|+.     -||++.+++.|++.++.+.
T Consensus       348 ~~th~~~~~~~r~~~Gi~~~liRlSVG-----lEd~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         348 SMTHAVVPKEEREAAGITDGMIRLSVG-----IEDADELIADFKQGLDALL  393 (394)
T ss_dssp             GTTTTTSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHHHhh
Confidence            0  0            02458999764     2788888999988887764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.36  E-value=1.6e-11  Score=111.87  Aligned_cols=245  Identities=14%  Similarity=0.154  Sum_probs=159.4

Q ss_pred             EEEecCCcchhHHHH----HHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHH
Q psy3048          32 VAYASDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGP  107 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~----~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~  107 (367)
                      .|++++..+......    ..-.|+++.+++..     |++.+++++++.++      +|.+..++|++..+.|++++.+
T Consensus        39 ~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-----d~~~~~~~i~~~t~------~i~~Es~~np~~~v~d~~~~~~  107 (331)
T d1pffa_          39 HLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-----VPGNIEKHLKPNTR------IVYFETPANPTLKVIDIEDAVK  107 (331)
T ss_dssp             EEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHTCCTTEE------EEEEESSCTTTCCCCCHHHHHH
T ss_pred             EEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----chhhHhhhcccccc------eeeeecccccccccccchhhhh
Confidence            455566666554444    33479999999875     88999999988774      8888999999999999999999


Q ss_pred             HH-hhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCccccccC
Q psy3048         108 IC-QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       108 l~-~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      ++ |++|+.++||.+.+...+.-+ .+   .|   +|+++.|..|++.+-..  .|.++. ++....+....   ++.. 
T Consensus       108 ~~a~~~~~~~vVDnT~atp~~~~p-l~---~G---aDiVv~S~TKy~~Gh~d~~~G~v~~-~~~~~~~~~~~---~~~~-  175 (331)
T d1pffa_         108 QARKQKDILVIVDNTFASPILTNP-LD---LG---VDIVVHSATKYINGHTDVVAGLVCS-RADIIAKVKSQ---GIKD-  175 (331)
T ss_dssp             HHTTSSSCEEEEECTTTHHHHCCG-GG---GT---CSEEEEETTTTTSSSSSCCCEEEEE-CHHHHHHHHHT---CCCC-
T ss_pred             hhhcccCceEEeeccccccccccc-cc---cC---CCEEEecchhhcCCCCccccccccc-cccchhhhhhh---hhhh-
Confidence            85 679999999999876554322 22   23   59999999999987533  344444 33322211100   0000 


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                                                                  ..+....+...|..++  |.+-+..+++++.+++..
T Consensus       176 --------------------------------------------~~G~~l~p~~a~ll~r--gl~Tl~~Rm~~~~~nA~~  209 (331)
T d1pffa_         176 --------------------------------------------ITGAIISPHDAWLITR--GTLTLDMRVKRAAENAQK  209 (331)
T ss_dssp             --------------------------------------------CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------ccCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence                                                        0011122344454443  677788899999999999


Q ss_pred             HHHHhcCCCCe-EEeCCC----------------CceeEEEEEcCCchHHHHHHHHHhcc--C-------cEEEEEe--E
Q psy3048         265 FADLVEKDDRF-ELVCPP----------------SMGLVCFRLKGDNDLTNQLYERLMSH--K-------QIYIIKA--S  316 (367)
Q Consensus       265 l~~~L~~~~g~-~~~~~~----------------~~~~v~f~~~~~~~~~~~l~~~L~~~--g-------~~~~~~~--~  316 (367)
                      +.+.|+++|.+ ++..|.                ..++++|.+.+ .+...++++.|.--  +       ...++|.  .
T Consensus       210 lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~-~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~  288 (331)
T d1pffa_         210 VAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG-LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMT  288 (331)
T ss_dssp             HHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHT
T ss_pred             HHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc-HHHHHHHHHhCCcceecccCCCCceeEeCccccc
Confidence            99999999987 455441                35788898865 44455666665321  1       0111110  0


Q ss_pred             E----------C--CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         317 F----------Q--GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       317 ~----------~--~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +          .  .++.+|+|+.     -||.+.+++.|++.++.+
T Consensus       289 h~~~~~e~~~~~Gi~~~liRlsvG-----lE~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         289 HAGVPKEEREAAGLTDNLIRLSVG-----CENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             STTSCHHHHHHTTCCTTEEEEECC-----SSCHHHHHHHHHHHHHTC
T ss_pred             cccCCHHHHHhcCCCcCeEEEEee-----eCCHHHHHHHHHHHHHHh
Confidence            0          0  2458999764     267888888888887753

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.36  E-value=2.6e-12  Score=121.40  Aligned_cols=260  Identities=12%  Similarity=0.094  Sum_probs=149.6

Q ss_pred             EEEecCCcchhHHHHHHhCCcceEEEec---CCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhhH
Q psy3048          32 VAYASDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEEL  105 (367)
Q Consensus        32 ~v~~s~~~H~s~~~~~~~~g~~v~~v~~---~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~I  105 (367)
                      .|++++..+......++..|++++.++.   +..+..|.+.+++.+....+   ..++++++.++|+||.+   +.+++|
T Consensus       132 ~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~il~~~P~NPTG~v~s~e~~~~i  208 (412)
T d1ajsa_         132 PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE---FSIFVLHACAHNPTGTDPTPEQWKQI  208 (412)
T ss_dssp             CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred             EEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccC---CcEEEEecCCCCCcCCCCCHHHHHHH
Confidence            4566778889999999999998766544   24567888888877765432   23688889999999998   568999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhh----hhCCCCCcceeeec-cccccccCCcceeEEEecchh--hhhhccCCc
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAH----LKRGLEYVDSFAFN-AHKWLLTNHDCSAMWVKNANH--LTNTFFTDR  178 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~----~~~~~~~~D~~~~~-~hK~l~~p~g~g~l~~~~~~~--~~~~~~~~~  178 (367)
                      +++|++||++++.|++|....+.......    .........++..+ +.|+......+|+++......  ..+..... 
T Consensus       209 ~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-  287 (412)
T d1ajsa_         209 ASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQM-  287 (412)
T ss_dssp             HHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHH-
T ss_pred             HHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHH-
Confidence            99999999999999999876553321110    00111111334444 455555557889888865321  11100000 


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH-----HHhhHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL-----RSYGLKGLQA  253 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~g~~~  253 (367)
                      ........                                          .....+.+..+...+     .......++.
T Consensus       288 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (412)
T d1ajsa_         288 QKIVRVTW------------------------------------------SNPPAQGARIVARTLSDPELFHEWTGNVKT  325 (412)
T ss_dssp             HHHHHTTT------------------------------------------SSCCSHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHhhccc------------------------------------------cccchHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            00000000                                          000001111111111     1112233555


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      ..++..++++.+.+.|+++..   +..+ +++.+.+.+ + +.   +.+.+++|.++..+++.++       .||+++. 
T Consensus       326 ~~~~l~~~r~~l~~~L~~~~~~~~~~~i-~~~~G~F~~-~-~l---s~~~v~~L~~e~gV~~vpg-------~Ri~~ag-  391 (412)
T d1ajsa_         326 MADRILSMRSELRARLEALKTPGTWNHI-TDQIGMFSF-T-GL---NPKQVEYLINQKHIYLLPS-------GRINMCG-  391 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCHHH-HHCCSSEEE-C-CC---CHHHHHHHHHTTCEECCTT-------SEEEGGG-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeeee-cCCCeEEEe-c-CC---CHHHHHHHHHhCCEEEeCC-------CeEEecc-
Confidence            666677778888888877631   2222 223344433 2 21   3355566765554655432       2887642 


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhh
Q psy3048         331 ETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       331 ~~~~edid~li~~l~~~~~~~~  352 (367)
                       .++++|++++++|++++++++
T Consensus       392 -~~~~~i~~~a~aI~~av~~~~  412 (412)
T d1ajsa_         392 -LTTKNLDYVATSIHEAVTKIQ  412 (412)
T ss_dssp             -CCTTTHHHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHHHHHHHhcC
Confidence             357889999999999988753

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.9e-11  Score=113.67  Aligned_cols=246  Identities=15%  Similarity=0.167  Sum_probs=161.0

Q ss_pred             eEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHH
Q psy3048          31 LVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELG  106 (367)
Q Consensus        31 ~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~  106 (367)
                      -.|++++..+-.......    -.|+++.+++..     |.+++++++++.++      +|.+..++|++..+.||++|+
T Consensus        98 d~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~t~------~i~~EtpsNP~l~v~Di~~i~  166 (391)
T d1cl1a_          98 DHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPNTK------IVFLESPGSITMEVHDVPAIV  166 (391)
T ss_dssp             CEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCCTTEE------EEEEESSCTTTCCCCCHHHHH
T ss_pred             CeEEEecccccchhhhhhhcccccccccccccCc-----cccccccccccccc------eeeecccCcccccccccHHHH
Confidence            346667777777666544    368888888754     67889988888774      888999999999999999999


Q ss_pred             HHHhhc--CcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCcccccc
Q psy3048         107 PICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKH  183 (367)
Q Consensus       107 ~l~~~~--gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~  183 (367)
                      ++|+++  |+.++||.+.+...+. .+.+.   |   +|+++.|..|++++-.. .|.+++.+.....+.... ...   
T Consensus       167 ~~a~~~~~g~~~vVDnT~atP~~~-~Pl~~---G---aDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~-~~~---  235 (391)
T d1cl1a_         167 AAVRSVVPDAIIMIDNTWAAGVLF-KALDF---G---IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYL---  235 (391)
T ss_dssp             HHHHHHCTTCEEEEECTTTTTTSS-CGGGG---T---CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH-HHH---
T ss_pred             HHHHhccCCcEEEEeccccchhhh-ccccc---c---cceEEeecchhccccccccccceeccccccccchhh-hhc---
Confidence            999875  9999999999765443 22222   3   49999999999997643 344445444333221100 000   


Q ss_pred             CCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3048         184 TDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK  263 (367)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~  263 (367)
                                                                    .+....+...|..+  .|.+-+.-+++++.+++.
T Consensus       236 ----------------------------------------------~G~~~~p~~a~ll~--rgl~TL~lR~~~~~~nA~  267 (391)
T d1cl1a_         236 ----------------------------------------------MGQMVDADTAYITS--RGLRTLGVRLRQHHESSL  267 (391)
T ss_dssp             ----------------------------------------------TTCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------ccccCCchhhhhhh--ccchhHHHHHHHHHHHHH
Confidence                                                          00111223444333  367778889999999999


Q ss_pred             HHHHHhcCCCCeEEe-CCC----------------CceeEEEEEcCCc--hHHHHHHHHHh--ccC-------cEEEEEe
Q psy3048         264 KFADLVEKDDRFELV-CPP----------------SMGLVCFRLKGDN--DLTNQLYERLM--SHK-------QIYIIKA  315 (367)
Q Consensus       264 ~l~~~L~~~~g~~~~-~~~----------------~~~~v~f~~~~~~--~~~~~l~~~L~--~~g-------~~~~~~~  315 (367)
                      .+.+.|+++|.+.-+ .|.                ..++++|.+.+..  +....+++.|.  ..+       ...+.+.
T Consensus       268 ~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~  347 (391)
T d1cl1a_         268 KVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQ  347 (391)
T ss_dssp             HHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCSCCCSSSCEEEEEC
T ss_pred             HHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEeeCCCCCccceeCCc
Confidence            999999999988744 331                2357888887531  22234444432  111       1112211


Q ss_pred             E-------EC-----CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         316 S-------FQ-----GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       316 ~-------~~-----~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .       ..     .++.+|+|+.     -||++.+++.|++.++++
T Consensus       348 ~~~~~~~~~~~~~gi~~~liRlSVG-----lEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         348 PEHIAAIRPQGEIDFSGTLIRLHIG-----LEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHHHTSTTCCCCCCSCEEEEECC-----SSCHHHHHHHHHHHHHHT
T ss_pred             ccccccCCchHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHHhh
Confidence            0       00     2458999764     378999999999988764

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.32  E-value=3.5e-12  Score=120.52  Aligned_cols=261  Identities=12%  Similarity=0.038  Sum_probs=155.9

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++..+......++..|++++.++..  .++..+.+.+++.+...++   ...+++++.++||||.+   +.+++
T Consensus       124 gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~i~~P~NPTG~~~s~~~~~~  200 (412)
T d1yaaa_         124 DKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE---GSIFVLHSCAHNPTGLDPTSEQWVQ  200 (412)
T ss_dssp             TCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT---TCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             CCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCC---ceEEEEecCCCCCccccCCHHHHHH
Confidence            3455556778888888999999999999873  5678899999888876543   24688999999999998   46899


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhh-------hhCCCCCcceeeeccccccc-cCCcceeEEEecchh--hh---
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAH-------LKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANH--LT---  171 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~--~~---  171 (367)
                      |+++|++++++++.|++|....+.......       .......--++..+..|.++ .+..+|+++......  ..   
T Consensus       201 i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~  280 (412)
T d1yaaa_         201 IVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIK  280 (412)
T ss_dssp             HHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHH
T ss_pred             HHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHH
Confidence            999999999999999999876553321110       00111111255667777655 568899998865321  00   


Q ss_pred             hhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHH-----Hh
Q psy3048         172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLR-----SY  246 (367)
Q Consensus       172 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~  246 (367)
                      ..+.........                                          .+..+...+.+......+.     ..
T Consensus       281 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~  318 (412)
T d1yaaa_         281 PAVTSQLAKIIR------------------------------------------SEVSNPPAYGAKIVAKLLETPELTEQ  318 (412)
T ss_dssp             HHHHHHHHHHHH------------------------------------------TTTSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHHHHHH------------------------------------------HHhcCCChHHHHHHHHHhcChHHHHH
Confidence            000000000000                                          0000011111111111111     11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEE
Q psy3048         247 GLKGLQAYLRKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFL  323 (367)
Q Consensus       247 ~~~g~~~~~~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~l  323 (367)
                      ..+.++...++..+.++.+.+.|+++..   +..+ +++.++..+ + +.   +.+++++|.++..+++.+    |   .
T Consensus       319 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~-~~~gG~F~~-~-~l---s~e~~~~L~~e~~V~~~~----g---~  385 (412)
T d1yaaa_         319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSF-T-GL---TPQMVKRLEETHAVYLVA----S---G  385 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEE-C-CC---CHHHHHHHHHHHCEECCT----T---S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcee-CCCceEEEe-c-Cc---CHHHHHHHHHhCCEEECC----C---C
Confidence            2334566666777788888888877521   2211 234454433 2 21   345677776665566543    2   3


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         324 RFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       324 Ri~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ||+++.  ++++.|+++.++|.++++.
T Consensus       386 Ris~~g--~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         386 RASIAG--LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             EEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred             EEEecc--CCHHHHHHHHHHHHHHHHh
Confidence            887643  3567899999999998764

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=7.1e-11  Score=109.78  Aligned_cols=246  Identities=16%  Similarity=0.181  Sum_probs=157.8

Q ss_pred             CceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhh
Q psy3048          29 SRLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEE  104 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~  104 (367)
                      ++. |+++...+........    ..|.++.+++.      +.++++++++++++      +|.+-.++|++..+.||++
T Consensus        93 gd~-iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~------~~~~~~~~i~~~t~------lv~~EspsNP~l~v~Di~~  159 (393)
T d1n8pa_          93 GSH-AVSIGDVYGGTHRYFTKVANAHGVETSFTND------LLNDLPQLIKENTK------LVWIETPTNPTLKVTDIQK  159 (393)
T ss_dssp             SCE-EEEESSCCHHHHHHHHHTSTTTCSCCEEESS------HHHHHHHHSCSSEE------EEEECSSCTTTCCCCCHHH
T ss_pred             CCe-eeeeeeecccchhhhhhhhhcccceeEEeec------chHHHHHHhhhhcc------eeEecCcchhhhhccchhh
Confidence            344 4455556666555543    35778777752      56789999888774      8999999999999999999


Q ss_pred             HHHHHh----hcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc--ceeEEEecchhhhhhccCCc
Q psy3048         105 LGPICQ----EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD--CSAMWVKNANHLTNTFFTDR  178 (367)
Q Consensus       105 I~~l~~----~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~  178 (367)
                      |+++||    ++|++++||.+.+...+.-+ .+   .|   +|+++.|..|++++-..  .|.+..++.....+.. ...
T Consensus       160 ia~~a~~~~~~~g~~lvVDnT~atP~~~~P-l~---~G---ADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~-~~~  231 (393)
T d1n8pa_         160 VADLIKKHAAGQDVILVVDNTFLSPYISNP-LN---FG---ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ-FLQ  231 (393)
T ss_dssp             HHHHHHHHTTTTTCEEEEECTTTHHHHCCG-GG---GT---CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH-HHH
T ss_pred             hhhhhhhhcccCCceEEEecCccCcccCCc-hh---hC---CCEEEEccccccCCCCccccceeeecchhHHHHHH-HHH
Confidence            999999    78899999999876554322 22   23   59999999999987643  3444444332222110 000


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKH  258 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~  258 (367)
                      ..+                                                 |........|..+  .|.+-+..++++.
T Consensus       232 ~~~-------------------------------------------------G~~~~p~~a~ll~--rgl~Tl~lR~~~~  260 (393)
T d1n8pa_         232 NAI-------------------------------------------------GAIPSPFDAWLTH--RGLKTLHLRVRQA  260 (393)
T ss_dssp             HHH-------------------------------------------------CCCCCHHHHHHHH--HHHTTHHHHHHHH
T ss_pred             hhc-------------------------------------------------CCCCChHHHHHHH--hCCcchhhHHHHH
Confidence            000                                                 1111224444443  4677788899999


Q ss_pred             HHHHHHHHHHhcCC-CCeEE-eCCC------------------CceeEEEEEcCCchHHHHHHHHHhc--cC-------c
Q psy3048         259 ISLAKKFADLVEKD-DRFEL-VCPP------------------SMGLVCFRLKGDNDLTNQLYERLMS--HK-------Q  309 (367)
Q Consensus       259 ~~la~~l~~~L~~~-~g~~~-~~~~------------------~~~~v~f~~~~~~~~~~~l~~~L~~--~g-------~  309 (367)
                      .+++..+.+.|+++ +.++- ..|.                  ..++++|.+.+..+...++.+.|.-  .+       .
T Consensus       261 ~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~S  340 (393)
T d1n8pa_         261 ALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES  340 (393)
T ss_dssp             HHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCc
Confidence            99999999999875 66654 3331                  1358999997644445567776532  11       1


Q ss_pred             EEEEEeE--E-----C-------CeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         310 IYIIKAS--F-----Q-------GRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       310 ~~~~~~~--~-----~-------~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ..+.|..  +     .       .++.+|+|+.     -||++.+++.|++.+++.
T Consensus       341 Li~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG-----lE~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         341 LLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-----IEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-----SSCHHHHHHHHHHHHHHH
T ss_pred             eEeCchhhccccCCHHHHHhcCCCcCEEEEEec-----cCCHHHHHHHHHHHHHHh
Confidence            1111100  0     0       1358999764     268889999999888764

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=1e-10  Score=109.36  Aligned_cols=278  Identities=15%  Similarity=0.145  Sum_probs=160.6

Q ss_pred             ceEEEecCCcchhHHHHHH----hCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhH
Q psy3048          30 RLVAYASDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEEL  105 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~----~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I  105 (367)
                      .-.|++++..+........    ..|+++.+++.++    ..+..++.++++++      +|.+..++|++..+.||++|
T Consensus        97 gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~~~t~------li~~EtpsNP~l~v~Di~~i  166 (421)
T d2ctza1          97 GDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTDEKTR------AWWVESIGNPALNIPDLEAL  166 (421)
T ss_dssp             TCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHH
T ss_pred             ccceeecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccCCCce------EEEEcCCCcceeEecchHHH
Confidence            4466667777766555443    4788888886532    45666777777774      89999999999999999999


Q ss_pred             HHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCc-ceeEEEecchhhhhhccCCccccccC
Q psy3048         106 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD-CSAMWVKNANHLTNTFFTDRVYLKHT  184 (367)
Q Consensus       106 ~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~  184 (367)
                      +++||++|+.++||.+.+...+...+..   .|   +|+++.|..|++++-.. .|.+++.++....... ..+.+-...
T Consensus       167 ~~iA~~~g~~~vvDnT~a~tP~~~~Pl~---~G---aDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~-r~~~~~~~~  239 (421)
T d2ctza1         167 AQAAREKGVALIVDNTFGMGGYLLRPLA---WG---AALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGG-RYPLLTEPQ  239 (421)
T ss_dssp             HHHHHHHTCEEEEECGGGGGGTSCCGGG---GT---CSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTT-TCHHHHSCB
T ss_pred             HHHHHhcCCceEecccccccceeccccc---cC---CcEEEEechhhccCCCCeEEEEEEcCCcchhhhc-ccccccCCc
Confidence            9999999999999999975444433332   24   49999999999987533 3333333322111000 000000000


Q ss_pred             CCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3048         185 DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKK  264 (367)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~  264 (367)
                      ..   .....+  ..+.+..    .......        ....-..|....+...|..+  .|.+-+.-+++++.+++..
T Consensus       240 ~~---~~~~~~--~~~~~~~----~~~~~~~--------~~~~~~~G~~~sP~~a~l~~--rgl~TL~lRm~~~~~nA~~  300 (421)
T d2ctza1         240 PG---YHGLRL--TEAFGEL----AFIVKAR--------VDGLRDQGQALGPFEAWVVL--LGMETLSLRAERHVENTLH  300 (421)
T ss_dssp             GG---GTTBCH--HHHHGGG----HHHHHHH--------HTHHHHHCCCCCHHHHHHHH--HHHTTHHHHHHHHHHHHHH
T ss_pred             hh---hhhhHH--HHHhccH----HHHHHHH--------HHHHHhccCCCCHHHHHHHh--cCCcchhhHHHHHHHHHHH
Confidence            00   000000  0000000    0000000        00000012223345555444  4677788999999999999


Q ss_pred             HHHHhcCCCCeE-EeCCC----------------C-ceeEEEEEcCCchHHHHHHHHHhcc------C---cEEEEEeE-
Q psy3048         265 FADLVEKDDRFE-LVCPP----------------S-MGLVCFRLKGDNDLTNQLYERLMSH------K---QIYIIKAS-  316 (367)
Q Consensus       265 l~~~L~~~~g~~-~~~~~----------------~-~~~v~f~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~-  316 (367)
                      +.+.|+++|.++ |..|.                . -++++|.+.+..+....+.+.|.--      |   ...+.|.. 
T Consensus       301 vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~  380 (421)
T d2ctza1         301 LAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPAST  380 (421)
T ss_dssp             HHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGT
T ss_pred             HHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccc
Confidence            999999999984 55541                1 3488998876333345666665421      1   11111110 


Q ss_pred             -E------------CCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         317 -F------------QGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       317 -~------------~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                       +            -.++.+|+|+.     -||++.+++.|++.+
T Consensus       381 th~~~~~e~r~~~GI~~~liRlSvG-----lEd~eDLi~DL~qAL  420 (421)
T d2ctza1         381 THSQLSPEEQAQAGVSPEMVRLSVG-----LEHVEDLKAELKEAL  420 (421)
T ss_dssp             TTTTSCHHHHHHHTCCTTEEEEECC-----SSCHHHHHHHHHHHT
T ss_pred             cchhCCHHHHHhcCCCcCeEEEEec-----cCCHHHHHHHHHHhc
Confidence             0            02458999764     267888888888763

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=5.2e-12  Score=118.59  Aligned_cols=259  Identities=18%  Similarity=0.090  Sum_probs=148.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++..+......+...|++++.++..  +++..+...+++.......   ..++++++.++||||.+   +.+++
T Consensus       120 gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~P~NPTG~~~s~e~~~~  196 (396)
T d2q7wa1         120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA---GDVVLFHGCCHNPTGIDPTLEQWQT  196 (396)
T ss_dssp             CCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT---TCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             ceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHhcc---CcEEEEecCCcCCcCeecCHHHHHH
Confidence            4456677888999999999999999999874  4566777777776644332   24688899999999998   56778


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh---hCCCCCcceeeecccccc-ccCCcceeEEEecchhhhhhccCCccc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL---KRGLEYVDSFAFNAHKWL-LTNHDCSAMWVKNANHLTNTFFTDRVY  180 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~---~~~~~~~D~~~~~~hK~l-~~p~g~g~l~~~~~~~~~~~~~~~~~y  180 (367)
                      |+++|++|+++++.|++|....+..+.....   ..+...-.++..+..|.+ .....+|++...... ....... ...
T Consensus       197 l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~-~~~~~~~-~~~  274 (396)
T d2q7wa1         197 LAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAAD-SETVDRA-FSQ  274 (396)
T ss_dssp             HHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS-HHHHHHH-HHH
T ss_pred             HHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhH-HHHHHHh-hhh
Confidence            9999999999999999998765432211111   001111134444555554 445789998886532 1110000 000


Q ss_pred             cccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHH-----HHhhHHHHHHHH
Q psy3048         181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTL-----RSYGLKGLQAYL  255 (367)
Q Consensus       181 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~g~~~~~  255 (367)
                      ......                                       ....++..+.+..+...+     .....+.+++..
T Consensus       275 ~~~~~~---------------------------------------~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  315 (396)
T d2q7wa1         275 MKAAIR---------------------------------------ANYSNPPAHGASVVATILSNDALRAIWEQELTDMR  315 (396)
T ss_dssp             HHHHHH---------------------------------------TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred             hhhhhh---------------------------------------ccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            000000                                       000000001111111111     111234556666


Q ss_pred             HHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCC
Q psy3048         256 RKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPET  332 (367)
Q Consensus       256 ~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~  332 (367)
                      ++..++++.+.+.|+++..   +..+.+ ..+.+.+ + +.   +.+..++|.++..+++.+    +.   ||+++  ..
T Consensus       316 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~-~~G~F~~-~-~l---~~e~~~~L~~e~gV~~~~----g~---Ri~~a--~l  380 (396)
T d2q7wa1         316 QRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSF-S-GL---TKEQVLRLREEFGVYAVA----SG---RVNVA--GM  380 (396)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSCCTHHHH-CCSSEEE-C-CC---CHHHHHHHHHHHCEECCT----TC---EEEGG--GC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceecC-CCeEEEe-e-CC---CHHHHHHHHHhCCEEECC----CC---EEEec--CC
Confidence            7777888888898888621   222222 3344433 2 21   345677777665455543    21   88764  23


Q ss_pred             CHHHHHHHHHHHHHH
Q psy3048         333 NQCDVAFAWNEISHQ  347 (367)
Q Consensus       333 ~~edid~li~~l~~~  347 (367)
                      ++++|++++++|.++
T Consensus       381 ~~~~i~~~~~ai~~v  395 (396)
T d2q7wa1         381 TPDNMAPLCEAIVAV  395 (396)
T ss_dssp             CTTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            578899999999876

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=8.8e-12  Score=116.82  Aligned_cols=257  Identities=16%  Similarity=0.106  Sum_probs=148.8

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++..+......++..|.+++.++..  ..+..+.+++++......+   ..++++++.++||||.+   +.+++
T Consensus       117 gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~p~NPTG~~~s~e~~~~  193 (394)
T d2ay1a_         117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK---GDMVLLHGCCHNPTGANLTLDQWAE  193 (394)
T ss_dssp             TCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT---TCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred             ceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhhccc---CcEEEEeCCCCCCCCCCCCHHHHHH
Confidence            3456677788888888899999999999874  4567788888877655432   23678888999999998   56889


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh----hCCCCCcceeeeccccccccCCcceeEEEecchh--hhhhccCCc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL----KRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH--LTNTFFTDR  178 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~----~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~--~~~~~~~~~  178 (367)
                      |+++|++|+++++.|++|....+..+.....    .........+...+.++......+|++.......  ........ 
T Consensus       194 l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~-  272 (394)
T d2ay1a_         194 IASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAM-  272 (394)
T ss_dssp             HHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHH-
T ss_pred             HHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhh-
Confidence            9999999999999999998765533221111    0001111222233344444557788887765321  11000000 


Q ss_pred             cccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH-----HHHHHhhHHHHHH
Q psy3048         179 VYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW-----MTLRSYGLKGLQA  253 (367)
Q Consensus       179 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~g~~~  253 (367)
                      ........                                          .....+.+....     ..+.....+.++.
T Consensus       273 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  310 (394)
T d2ay1a_         273 AFLNRQTY------------------------------------------SFPPFHGAKIVSTVLTTPELRADWMAELEA  310 (394)
T ss_dssp             HHHHHTTT------------------------------------------SSCCCHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             Hhhhcccc------------------------------------------cchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            00000000                                          000000011111     1111222344556


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC---eEEeCCCCceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCC
Q psy3048         254 YLRKHISLAKKFADLVEKDDR---FELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP  330 (367)
Q Consensus       254 ~~~~~~~la~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~  330 (367)
                      ..++..++++.+.+.|+++.+   |..+ +++.+++++ + +   .+.+..++|.++..+++.+    |   .||+++. 
T Consensus       311 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~G~F~~-~-~---ls~~~~~~L~~~~~V~~~~----g---~Ri~~a~-  376 (394)
T d2ay1a_         311 VRSGMLRLREQLAGELRDLSGSDRFGFV-AEHRGMFSR-L-G---ATPEQVKRIKEEFGIYMVG----D---SRINIAG-  376 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSTTTHH-HHCCSSEEE-C-C---CCHHHHHHHHHHHCEECCT----T---CEEEGGG-
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceeeE-CCCceeEEe-c-C---cCHHHHHHHHHhCCEEecC----C---CEEEecC-
Confidence            666777778888888876521   2211 234455443 2 2   1345677887665566543    2   3887643 


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy3048         331 ETNQCDVAFAWNEISHQ  347 (367)
Q Consensus       331 ~~~~edid~li~~l~~~  347 (367)
                       .++++|+++.++|.++
T Consensus       377 -l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         377 -LNDNTIPILARAIIEV  392 (394)
T ss_dssp             -CCTTTHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHh
Confidence             3578899999999887

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-09  Score=100.03  Aligned_cols=272  Identities=11%  Similarity=-0.033  Sum_probs=155.9

Q ss_pred             chHHHHHHHhHhhhhcCCCCcccccccCceEEEecCCcchhHHHHHHhCC------------cceEEEecCCCCCcCHHH
Q psy3048           2 VSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDA   69 (367)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g------------~~v~~v~~~~~~~~d~~~   69 (367)
                      .||++||++.-.......        ....++......|-....+....+            ..+..+|.+     |+++
T Consensus       113 ~Aik~ar~~~~~~~~~~~--------~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~  179 (404)
T d2byla1         113 TACKLARKWGYTVKGIQK--------YKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPA  179 (404)
T ss_dssp             HHHHHHHHHHHHTTCCCT--------TCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHH
T ss_pred             hHHHHHHHHhhhcccccc--------ccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHH
Confidence            478899987664432111        123455556666765544443221            134555544     8899


Q ss_pred             HHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCccee
Q psy3048          70 LLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF  145 (367)
Q Consensus        70 L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~  145 (367)
                      +++++++..     ..+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.+...++ ..|++
T Consensus       180 l~~~l~~~~-----iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv-~PDi~  253 (404)
T d2byla1         180 LERALQDPN-----VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV  253 (404)
T ss_dssp             HHHHHTSTT-----EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE
T ss_pred             HHHhcCCCC-----eEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCC-CCCEE
Confidence            999986422     234555444445566655    89999999999999999999977544333233323344 35877


Q ss_pred             eeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccc
Q psy3048         146 AFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ  224 (367)
Q Consensus       146 ~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (367)
                      ++  -|.+++. .-.|.++.++.  +...+  .+....                                          
T Consensus       254 ~~--gK~l~gG~~p~~av~~~~~--i~~~~--~~~~~~------------------------------------------  285 (404)
T d2byla1         254 LL--GKALSGGLYPVSAVLCDDD--IMLTI--KPGEHF------------------------------------------  285 (404)
T ss_dssp             EE--CGGGGTTSSCCEEEEECHH--HHTTS--CTTSSC------------------------------------------
T ss_pred             EE--CchhhCCCccceeeeechh--hhhcc--CCCCCC------------------------------------------
Confidence            55  4777665 45677777432  21111  111000                                          


Q ss_pred             cccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCce-eEEEEEcCC-chHHHHHHH
Q psy3048         225 HWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMG-LVCFRLKGD-NDLTNQLYE  302 (367)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~-~v~f~~~~~-~~~~~~l~~  302 (367)
                        .+-.+......+..+.|+.+..+.   +.++..++.+++.+.|+++..=.+..-...+ +..+.+... .....++..
T Consensus       286 --~T~~gnpl~~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~  360 (404)
T d2byla1         286 --STYGGNPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCL  360 (404)
T ss_dssp             --CSSTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHH
T ss_pred             --cCCCcCHHHHHHHHHHHHHHHhcC---chhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCchhHHHHHH
Confidence              001112223344555666665544   4456677788888888775320011001112 334444321 234567888


Q ss_pred             HHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         303 RLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       303 ~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ++.++|.+ +.+.   +...+|+++ ....|++|||.+++.|++.+++
T Consensus       361 ~l~~~Gvl-~~~~---~~~~i~l~P-pL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         361 RLRDNGLL-AKPT---HGDIIRFAP-PLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             HHHHTTEE-CEEE---ETTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCeE-EecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHc
Confidence            99999954 3222   224789954 4556899999999999998764

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.8e-12  Score=119.61  Aligned_cols=135  Identities=16%  Similarity=0.016  Sum_probs=97.5

Q ss_pred             ceEEEecCCcchhHHHHHHhCCcceEEEecC--CCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCccccc---CChhh
Q psy3048          30 RLVAYASDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEE  104 (367)
Q Consensus        30 ~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~--~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i---~dl~~  104 (367)
                      .-.|++++..+......++..|++++.++++  .++..+.+++.+.+....+   ..++++++.++|+||.+   +.+++
T Consensus       121 gd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~  197 (397)
T d3tata_         121 ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPA---RSIVLLHPCCHNPTGADLTNDQWDA  197 (397)
T ss_dssp             SCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCS---SCCCEECSSSCSSSCCCCCHHHHHH
T ss_pred             CCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhccc---ccEEEEecCCCCCCCeeCCHHHHHH
Confidence            4467788999999999999999999999985  3467788888877654332   24678889999999998   57788


Q ss_pred             HHHHHhhcCcEEEEecccccccccChhhhhh---hCCCCCcceeeecccccccc-CCcceeEEEecc
Q psy3048         105 LGPICQEYNIWLHVDAAYAGSALLLPEYAHL---KRGLEYVDSFAFNAHKWLLT-NHDCSAMWVKNA  167 (367)
Q Consensus       105 I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~---~~~~~~~D~~~~~~hK~l~~-p~g~g~l~~~~~  167 (367)
                      |+++|++||++++.|.+|+...+..+.....   ..+...--++..+..|.++. ...+|++.....
T Consensus       198 l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  264 (397)
T d3tata_         198 VIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCE  264 (397)
T ss_dssp             HHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECS
T ss_pred             HHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchh
Confidence            9999999999999999998765532211111   11111112555667787655 477899887653

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.18  E-value=5.9e-09  Score=97.61  Aligned_cols=224  Identities=12%  Similarity=-0.001  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCC
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY  141 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~  141 (367)
                      +.+.++.++.+..     ..+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++......+.+...++ .
T Consensus       174 ~~~~l~~~~~~~~-----iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv-~  247 (404)
T d1z7da1         174 DLEALEEELKDPN-----VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-K  247 (404)
T ss_dssp             CHHHHHHHHTSTT-----EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-C
T ss_pred             hHHHHHHHhcCCC-----EEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCC-C
Confidence            5667766664322     345555555556677766    89999999999999999999976543332222222345 4


Q ss_pred             cceeeeccccccccC-CcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         142 VDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       142 ~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      .|++++  -|.+++. .-+|.++.+++ ... .+  .+.....                                     
T Consensus       248 PDivt~--gK~l~gG~~p~~~v~~~~~-i~~-~~--~~~~~~~-------------------------------------  284 (404)
T d1z7da1         248 PDVILL--GKALSGGHYPISAVLANDD-IML-VI--KPGEHGS-------------------------------------  284 (404)
T ss_dssp             CSEEEE--CGGGGTTSSCCEEEEECHH-HHT-TC--CTTCCCC-------------------------------------
T ss_pred             CCEEEE--cccccCCCCCcccccchHH-HHc-cC--CCCCcCc-------------------------------------
Confidence            688755  4777654 44666666543 221 11  0110000                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCceeEEEEEcCCchHHHH
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQ-AYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQ  299 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~  299 (367)
                            + -.+....+.+..+.|+.+..+.+. ...+....+.+.+.+.+++.+.+.-+.- .-.+..+.+..+.....+
T Consensus       285 ------T-~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-~Gl~~~i~~~~~~~~~~~  356 (404)
T d1z7da1         285 ------T-YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNELVNVLD  356 (404)
T ss_dssp             ------T-TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTTTCCHHH
T ss_pred             ------C-CCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEe-eCcEEEEEEcCCcccHHH
Confidence                  0 011122334445556655554433 3333344555666666666654422111 112344555543333467


Q ss_pred             HHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         300 LYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       300 l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      +..++.++|.+ +.+.   +...+|+++ ....+++|+|++++.|++.++++
T Consensus       357 ~~~~l~~~Gl~-~~~~---~~~~ir~~P-pl~it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         357 ICLKLKENGLI-TRDV---HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             HHHHHHHTTEE-CCEE---TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeE-EecC---CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHhh
Confidence            88889999953 3221   335799954 45578999999999999999875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=3.1e-09  Score=98.99  Aligned_cols=224  Identities=14%  Similarity=0.068  Sum_probs=128.3

Q ss_pred             ceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEeccccccccc
Q psy3048          53 PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALL  128 (367)
Q Consensus        53 ~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~  128 (367)
                      .+..+|.+     |.+.|++.++++.      ..|++.-.....|.+.+    +++|.++|++||+++++|+.+.++...
T Consensus       158 ~~~~~p~~-----d~~~l~~~~~~~i------Aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~  226 (387)
T d1vefa1         158 PVEFIPYN-----DVEALKRAVDEET------AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRT  226 (387)
T ss_dssp             CEEEECTT-----CHHHHHHHCCTTE------EEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             CceEeCCC-----CHHHHHHhcCCCe------EEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCcc
Confidence            34556544     7899998886543      35555444444576656    999999999999999999999775332


Q ss_pred             ChhhhhhhCCCCCcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCc
Q psy3048         129 LPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLP  208 (367)
Q Consensus       129 ~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (367)
                      ...+.+...++ ..|+++++  |.+++..-.+.+..+++. .. .+  .+.+..+                         
T Consensus       227 G~~~~~~~~~v-~PDi~~~g--K~l~gG~~~~~~~~~~~~-~~-~~--~~~~~g~-------------------------  274 (387)
T d1vefa1         227 GKRFAFEHFGI-VPDILTLA--KALGGGVPLGVAVMREEV-AR-SM--PKGGHGT-------------------------  274 (387)
T ss_dssp             SSSSTHHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH-HH-TS--CTTSSCC-------------------------
T ss_pred             CCCcccccCCc-CCceeeec--ccCCCCccccccccceee-ee-cc--ccCCccc-------------------------
Confidence            21111111234 35887775  666665555666654432 11 11  1111100                         


Q ss_pred             chhccCCCCCCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCc-eeEE
Q psy3048         209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM-GLVC  287 (367)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~~~~-~~v~  287 (367)
                                        + -.+....+.+..+.|+.+..   .+..++..++.+++.++|+++..=.+...... .+..
T Consensus       275 ------------------T-~~gnPla~aaa~a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~  332 (387)
T d1vefa1         275 ------------------T-FGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVG  332 (387)
T ss_dssp             ------------------S-STTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEE
T ss_pred             ------------------c-CCCCcchhhhcccchhhccc---ccccchHhhhhHHHHHHHHhcCCCceEEEeecceEEE
Confidence                              0 01111223344444555433   34456677888889888887532001111111 2334


Q ss_pred             EEEcCCchHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy3048         288 FRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQS  348 (367)
Q Consensus       288 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~  348 (367)
                      +.+..  .....+.+.+.++|.+...    .+...+|+++ ....|++|+|.+++++++++
T Consensus       333 ie~~~--~~~~~~~~~~~~~g~l~~~----~g~~~ir~~P-pl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         333 LELKE--KAAPYIARLEKEHRVLALQ----AGPTVIRFLP-PLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             EEESS--CSHHHHHHHHHHHCEECEE----SSTTEEEECC-CTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEeC--CchHHHHHHHHHCCCeEEe----cCCCEEEEEC-CccCCHHHHHHHHHHHHHHh
Confidence            55543  2245566666777754332    3456899954 45678999999999999875

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.09  E-value=4.7e-10  Score=105.74  Aligned_cols=244  Identities=11%  Similarity=0.023  Sum_probs=144.2

Q ss_pred             CceEEEecCCcchhHHHHHHhCCcceEEEecCCCCCcCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCChhhHHHH
Q psy3048          29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPI  108 (367)
Q Consensus        29 ~~~~v~~s~~~H~s~~~~~~~~g~~v~~v~~~~~~~~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~dl~~I~~l  108 (367)
                      +.-.|++....+......+++.+.+...++.      |.+.+++++++.+      .++++++|+||||.+..       
T Consensus       154 pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~------~ii~l~sPnNPtG~l~~-------  214 (425)
T d2hoxa1         154 PESKVVAHAPFYPVFREQTKYFDKKGYVWAG------NAANYVNVSNPEQ------YIEMVTSPNNPEGLLRH-------  214 (425)
T ss_dssp             CCEEEEECSSCCHHHHHHHHHSCBTTEEEEE------EGGGGTTCSCGGG------EEEEEESSCTTTCCCCC-------
T ss_pred             CCCEEEEecCccccHHHHHHHcCCCCCccCC------CHHHHHhhCCCCc------eEEEEECCCCCCcchhh-------
Confidence            3455666778888888888888887666554      5666776666655      58999999999998732       


Q ss_pred             HhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccc-cCCcceeEEEecchhhhhhccCCccccccCCCC
Q psy3048         109 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLL-TNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAP  187 (367)
Q Consensus       109 ~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~-~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~  187 (367)
                      +-.+++++++|++|....+..      ......-+++..+..|.++ ++..+|++++.++...++...    +...    
T Consensus       215 ~v~~~~~~I~DEaY~~~~f~~------~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~----~~~~----  280 (425)
T d2hoxa1         215 AVIKGCKSIYDMVYYWPHYTP------IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN----YMTK----  280 (425)
T ss_dssp             CSSTTCEEEEECTTCSTTTSC------CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH----HHHH----
T ss_pred             hhhhCCEEEEeccccCccccc------hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHH----hhcc----
Confidence            223689999999985432211      0112223788888999988 458899988876654332210    0000    


Q ss_pred             CCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHHHHHHHh----------hHHHHHHHHHH
Q psy3048         188 MNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSY----------GLKGLQAYLRK  257 (367)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~g~~~~~~~  257 (367)
                                                             ...+.....+.+...+++..          ..+-++...++
T Consensus       281 ---------------------------------------~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~  321 (425)
T d2hoxa1         281 ---------------------------------------NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKK  321 (425)
T ss_dssp             ---------------------------------------HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHH
T ss_pred             ---------------------------------------CcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   00000111112222222211          12234445566


Q ss_pred             HHHHHHHHHHHhcCCCCeEEeCCC--------------CceeEEEEEcCCchHHHHHHHHHhccCcEEEEEeEEC-CeeE
Q psy3048         258 HISLAKKFADLVEKDDRFELVCPP--------------SMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQ-GRPF  322 (367)
Q Consensus       258 ~~~la~~l~~~L~~~~g~~~~~~~--------------~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~~~  322 (367)
                      ..+..+++.+.|++.+++.+...|              ....+.+++.. + ....+.+.|.+.|++...+..+. ++++
T Consensus       322 l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~-~-~~~~~~~lL~e~gI~v~pGs~FG~~~~y  399 (425)
T d2hoxa1         322 LRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-E-EDKDCYQTFQNGRINTQNGVGFEASSRY  399 (425)
T ss_dssp             HHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-G-GGCSHHHHHHHTTEECEEGGGGTSCTTE
T ss_pred             HHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCC-C-hHHHHHHHHHhCCEEEEechhcCCCCCE
Confidence            667778888888887655443211              11223444432 1 12234455666775444333332 3579


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy3048         323 LRFVVTSPETNQCDVAFAWNEISHQSS  349 (367)
Q Consensus       323 lRi~~~~~~~~~edid~li~~l~~~~~  349 (367)
                      +|+++..   ++++++.++++|+++++
T Consensus       400 vRisl~~---~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         400 VRLSLIK---TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             EEEECSS---CHHHHHHHHHHHHHHHT
T ss_pred             EEEEecC---CHHHHHHHHHHHHHHHh
Confidence            9997643   68999999999999875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=7e-08  Score=90.79  Aligned_cols=227  Identities=9%  Similarity=0.021  Sum_probs=123.3

Q ss_pred             cCHHHHHHHHHHHhhCCCccEEEEEecCCCccc-ccC-C---hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCC
Q psy3048          65 LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTC-AFD-N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL  139 (367)
Q Consensus        65 ~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G-~i~-d---l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~  139 (367)
                      -+++++++.+.+...   .+..|++.-.....| ... |   +++|.++|++||+.+++|+.+.++.....-+.+...++
T Consensus       189 ~~~~~~~~~~~~~~~---~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v  265 (429)
T d1s0aa_         189 RDMVGFARLMAAHRH---EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI  265 (429)
T ss_dssp             GGGHHHHHHHHHHTT---TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred             hhhhhhhhhhhhcCC---ccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccccccee
Confidence            355666666555432   233444442222233 432 2   89999999999999999999987643332222222233


Q ss_pred             CCcceeeeccccccccC-CcceeEEEecchhhhhhccCC-ccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCC
Q psy3048         140 EYVDSFAFNAHKWLLTN-HDCSAMWVKNANHLTNTFFTD-RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKG  217 (367)
Q Consensus       140 ~~~D~~~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (367)
                       ..|+++++  |.+.+. ...|.++.+++ ......... ..+...                                  
T Consensus       266 -~PDi~~~g--K~l~gG~~p~~av~~~~~-i~~~~~~~~~~~~~~~----------------------------------  307 (429)
T d1s0aa_         266 -APDILCLG--KALTGGTMTLSATLTTRE-VAETISNGEAGCFMHG----------------------------------  307 (429)
T ss_dssp             -CCSEEEEC--GGGGTSSSCCEEEEECHH-HHHHHHTSTTSSCSCC----------------------------------
T ss_pred             -cccccccc--cccccccccccchhhHHH-HHhccCCCCCcceeec----------------------------------
Confidence             35877764  555443 45666666543 221110100 011100                                  


Q ss_pred             CCCCccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCc-eeEEEEEcCCch
Q psy3048         218 PGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP-PSM-GLVCFRLKGDND  295 (367)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~~g~~~~~~-~~~-~~v~f~~~~~~~  295 (367)
                               .+-.+......+..+.|+.+..+   +..++..++.+++.++|+++.....+.. ... .+..+.+.. ..
T Consensus       308 ---------~T~~gnp~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~~-~~  374 (429)
T d1s0aa_         308 ---------PTFMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTH-PV  374 (429)
T ss_dssp             ---------CTTTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESS-CB
T ss_pred             ---------CCCCCCcccchhhhccccccccc---cccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEecC-cc
Confidence                     00111112334445555555443   3456777788888888866421111111 112 234455544 33


Q ss_pred             HHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         296 LTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       296 ~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      ....+.+.+.++|.+ +.+   .+ ..+|+++ ..-.|++|||+++++|++.+++.
T Consensus       375 ~~~~~~~~~~~~Gl~-~~~---~g-~~i~~~P-pl~it~~eid~~~~~l~~al~e~  424 (429)
T d1s0aa_         375 NMAALQKFFVEQGVW-IRP---FG-KLIYLMP-PYIILPQQLQRLTAAVNRAVQDE  424 (429)
T ss_dssp             CHHHHHHHHHHTTEE-CCC---BT-TEEEECC-CTTCCHHHHHHHHHHHHHHTSSG
T ss_pred             cHHHHHHHHHHCCcE-EEe---cC-CEEEEeC-CcCCCHHHHHHHHHHHHHHHHhh
Confidence            456888899999843 322   23 4799954 45678999999999999987764

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.91  E-value=2.3e-08  Score=94.15  Aligned_cols=95  Identities=17%  Similarity=0.008  Sum_probs=62.9

Q ss_pred             cCHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC
Q psy3048          65 LRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE  140 (367)
Q Consensus        65 ~d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~  140 (367)
                      .|+++|++.+++...   ...+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++ ....-+.....++ 
T Consensus       184 ~~~~~le~~~~~~~~---~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi-  258 (427)
T d2gsaa_         184 NDLEAVKALFAENPG---EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGV-  258 (427)
T ss_dssp             TCHHHHHHHHTTSTT---TEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTC-
T ss_pred             chHHHHHHHHHhCCC---CeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCC-
Confidence            389999999976432   2345666555555688877    999999999999999999999765 2222222222344 


Q ss_pred             CcceeeeccccccccCCcceeEEEec
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKN  166 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~  166 (367)
                      ..|+++++  |.+++..-.|+++.++
T Consensus       259 ~PDi~~~g--K~lggG~p~~a~~~~~  282 (427)
T d2gsaa_         259 TPDLTTLG--KIIGGGLPVGAYGGKR  282 (427)
T ss_dssp             CCSEEEEC--GGGGTTSCCEEEEECH
T ss_pred             CHHHHhhh--hccCCCcceeeeeehH
Confidence            45887775  4555554556666643

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.91  E-value=5.6e-08  Score=92.37  Aligned_cols=219  Identities=13%  Similarity=0.088  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHhhCCCccEEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCC-
Q psy3048          66 RGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-  140 (367)
Q Consensus        66 d~~~L~~~l~~~~~~~~~~~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~-  140 (367)
                      +.+++++.+.....+.....+|++.-.....|.+.|    +++|.++|++||+++++|+.+.++.....-+.+...+++ 
T Consensus       231 ~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~  310 (461)
T d1ohwa_         231 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD  310 (461)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSS
T ss_pred             hHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccccccccccccccc
Confidence            356667766554433333445666655555565533    899999999999999999999775433221222223443 


Q ss_pred             CcceeeeccccccccCCcceeEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCC
Q psy3048         141 YVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGG  220 (367)
Q Consensus       141 ~~D~~~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (367)
                      ..|+++++  |.+.    .|.+...  ..+.    ....+...                                     
T Consensus       311 ~PDiv~~g--K~l~----~g~~~~~--~~~~----~~~~~~~~-------------------------------------  341 (461)
T d1ohwa_         311 PADVMTFS--KKMM----TGGFFHK--EEFR----PNAPYRIF-------------------------------------  341 (461)
T ss_dssp             CCSEEEEC--GGGS----SEEEEEC--GGGS----CSSTTSSC-------------------------------------
T ss_pred             Cchhhhhh--hccc----ccccccc--cccc----cccccccc-------------------------------------
Confidence            35888664  5443    3343331  1111    00000000                                     


Q ss_pred             CccccccccccccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC----CC-e-EEeCCCCceeEEEEEcCCc
Q psy3048         221 GVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD----DR-F-ELVCPPSMGLVCFRLKGDN  294 (367)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~la~~l~~~L~~~----~g-~-~~~~~~~~~~v~f~~~~~~  294 (367)
                            .+-.+....+.+..+.|+.+..+.   +.++..++.+++.++|+++    |. + ++-+  .-.++.+.++. .
T Consensus       342 ------~T~~g~p~~~aaa~a~l~~i~~~~---l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG--~Gl~~~ie~~~-~  409 (461)
T d1ohwa_         342 ------NTWLGDPSKNLLLAEVINIIKRED---LLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD-E  409 (461)
T ss_dssp             ------CSCSSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS-H
T ss_pred             ------cccccccccchhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEeee--eeEEEEEEcCC-H
Confidence                  000111122344455566555443   4455666667776666553    32 1 1111  11244566654 5


Q ss_pred             hHHHHHHHHHhccCcEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy3048         295 DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSE  350 (367)
Q Consensus       295 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~  350 (367)
                      ....++.+.+.++|.+ +.+.   +...||+.+ ....|++|+|.+++.|++++.+
T Consensus       410 ~~~~~i~~~~~~~Gll-~~~~---~~~~ir~~P-pL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         410 SIRNKLISIARNKGVM-LGGC---GDKSIRFRP-TLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             HHHHHHHHHHHHTTEE-CEEE---TTTEEECCC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCeE-EeeC---CCCEEEEeC-CcCCCHHHHHHHHHHHHHHHhc
Confidence            5667899999999953 3322   345899954 5677899999999999999875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.7e-07  Score=86.66  Aligned_cols=209  Identities=17%  Similarity=0.176  Sum_probs=116.6

Q ss_pred             EEEEEecCCCcccccC----ChhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~----dl~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      ..|++.-.....|.+.    -+++|.++|++||+.+++|+.+.++......+.+...++ ..|++++  -|.+++...+|
T Consensus       200 aavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv-~PDi~~~--gK~l~gG~P~~  276 (425)
T d1sffa_         200 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLTTF--AKSIAGGFPLA  276 (425)
T ss_dssp             EEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEEEE--CGGGGTSSCCE
T ss_pred             EEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC-Cccceec--ccccCCCcceE
Confidence            4455544344456553    478999999999999999999987443322222222344 4687775  57787766788


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      +++.+++- . ..+  .+.....                                           +. .+....+.+..
T Consensus       277 av~~~~~i-~-~~~--~~~~~~~-------------------------------------------T~-~gnpl~~aaa~  308 (425)
T d1sffa_         277 GVTGRAEV-M-DAV--APGGLGG-------------------------------------------TY-AGNPIACVAAL  308 (425)
T ss_dssp             EEEEEHHH-H-TTS--CTTSBCC-------------------------------------------SS-SSCHHHHHHHH
T ss_pred             EEEEcHHH-H-Hhh--CCCCCCC-------------------------------------------CC-CcCHHHHHHHH
Confidence            88886542 1 111  0000000                                           00 11112234444


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH----hcCCCCeE-EeCCCCceeEEEEEcC-------CchHHHHHHHHHhccC
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADL----VEKDDRFE-LVCPPSMGLVCFRLKG-------DNDLTNQLYERLMSHK  308 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~----L~~~~g~~-~~~~~~~~~v~f~~~~-------~~~~~~~l~~~L~~~g  308 (367)
                      +.|+.+.++.+   .++...+.+++.+.    +++.+-+. +-...  .+..+.+..       +......+.+++.++|
T Consensus       309 a~L~~i~~~~~---~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~G--l~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~G  383 (425)
T d1sffa_         309 EVLKVFEQENL---LQKANDLGQKLKDGLLAIAEKHPEIGDVRGLG--AMIAIELFEDGDHNKPDAKLTAEIVARARDKG  383 (425)
T ss_dssp             HHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEET--TEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhh---hhhhhhhhhhhhhhhhhhHhhCCceEEEEccc--cEEEEEEeccCccCCccHHHHHHHHHHHHHCC
Confidence            55555544443   33444555555544    44444322 11111  223333321       1234567888899999


Q ss_pred             cEEEEEeEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhh
Q psy3048         309 QIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN  352 (367)
Q Consensus       309 ~~~~~~~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~~  352 (367)
                      .+ +.+.. .....+|+++ ....+++|||.++++++++++++.
T Consensus       384 vl-~~~~g-~~~n~i~~~P-pL~it~~eid~~l~~l~~al~eik  424 (425)
T d1sffa_         384 LI-LLSCG-PYYNVLRILV-PLTIEDAQIRQGLEIISQCFDEAK  424 (425)
T ss_dssp             EE-CEEES-TTSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             CE-EeccC-CCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            54 32221 1235799954 456789999999999999999875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.70  E-value=5.2e-07  Score=84.80  Aligned_cols=211  Identities=13%  Similarity=0.083  Sum_probs=110.4

Q ss_pred             EEEEEecCCCcccccCC----hhhHHHHHhhcCcEEEEecccccccccChhhhhhhCCCCCcceeeeccccccccCCcce
Q psy3048          85 CCLVATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCS  160 (367)
Q Consensus        85 ~~vv~~~~~t~~G~i~d----l~~I~~l~~~~gi~l~vD~a~~~~~~~~~~~~~~~~~~~~~D~~~~~~hK~l~~p~g~g  160 (367)
                      .+|++.-....-|.+.|    +++|.++|++||+++++|+.+.++......+.....++ ..|+++++  |.+.+..-.+
T Consensus       203 Aavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv-~PDi~~~g--K~l~gG~p~~  279 (431)
T d1zoda1         203 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTLS--KTLGAGLPLA  279 (431)
T ss_dssp             EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--HHHHTTSSCE
T ss_pred             cceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCC-Ccchhccc--cccccccccc
Confidence            34444433333456554    89999999999999999999987443222222222244 45887774  6666665566


Q ss_pred             eEEEecchhhhhhccCCccccccCCCCCCCCCCCchhhhhhcccCCCcchhccCCCCCCCCccccccccccccccHHHHH
Q psy3048         161 AMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW  240 (367)
Q Consensus       161 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (367)
                      .++.++.. ......  ..+...                                           .+-.+....+.+..
T Consensus       280 av~~~~~~-~~~~~~--~~~~~~-------------------------------------------~T~~g~pl~~aaa~  313 (431)
T d1zoda1         280 AIVTSAAI-EERAHE--LGYLFY-------------------------------------------TTHVSDPLPAAVGL  313 (431)
T ss_dssp             EEEECHHH-HHHHHH--TTCCCC-------------------------------------------CTTTTCHHHHHHHH
T ss_pred             eeeeeecc-hhhhhc--cccccc-------------------------------------------CCCCCCcchHHHHH
Confidence            66665432 111100  000000                                           00011112223344


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH----hcCCCCeEEeCCCCce-eEEEEEc--C-----CchHHHHHHHHHhccC
Q psy3048         241 MTLRSYGLKGLQAYLRKHISLAKKFADL----VEKDDRFELVCPPSMG-LVCFRLK--G-----DNDLTNQLYERLMSHK  308 (367)
Q Consensus       241 ~~l~~~~~~g~~~~~~~~~~la~~l~~~----L~~~~g~~~~~~~~~~-~v~f~~~--~-----~~~~~~~l~~~L~~~g  308 (367)
                      +.++.+..+.   ..++..++.+++.+.    +++.+-+.=  ....+ +..+.+.  .     .+.....+.+.+.++|
T Consensus       314 a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~i~~--vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~G  388 (431)
T d1zoda1         314 RVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGD--VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLG  388 (431)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEE--EEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTT
T ss_pred             HHHHHhhhhh---hhHHHHHHHHHHhhhhhhhhhcCCCeEE--EeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhC
Confidence            4455554444   333444444444444    344432210  11111 2223221  1     1234567888888888


Q ss_pred             cEEEEE-eEECCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q psy3048         309 QIYIIK-ASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM  351 (367)
Q Consensus       309 ~~~~~~-~~~~~~~~lRi~~~~~~~~~edid~li~~l~~~~~~~  351 (367)
                      .. ... ........+|+++ ....|++|||.++++|++.++++
T Consensus       389 l~-~~~~~~~~~~~~i~l~P-pl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         389 LS-MNIVQLPGMGGVFRIAP-PLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             EE-CCEECCTTSCCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cc-cCeeeecCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence            42 111 1112345899954 45678999999999999999875