Psyllid ID: psy3080

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY
cHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHHcc
cHHHHHHHHHHHHHHccHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHc
MRRLLIGKIAAHIadftprlrgnnravyqfcgipavrypqleqEMFVNIFYLRHlcdtakfpdwpinqpiMLLKDVLEAWKAEverkppemsvDDAYEALgltrgshheeNIVRKAYY
MRRLLIGKIAahiadftprlrgnnRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEverkppemsvDDAYEAlgltrgshheenivrkayy
MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY
***LLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAE***********************************
*******KIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVE******SV*DAYEALGLTRGS****NIVRKAYY
MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY
*RRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVR*AYY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query118 2.2.26 [Sep-21-2011]
O75165 2243 DnaJ homolog subfamily C yes N/A 1.0 0.052 0.647 8e-44
F4IVL6 2554 DnaJ homolog subfamily C yes N/A 0.949 0.043 0.321 2e-15
>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5 Back     alignment and function desciption
 Score =  175 bits (443), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 1/119 (0%)

Query: 1    MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAK 60
            MRRL+I KIAAH+ADFTPRL+ N RA+YQ+C IP + YPQLE E+F NI+YL+ LCDT +
Sbjct: 1207 MRRLMIEKIAAHLADFTPRLQSNTRALYQYCPIPIINYPQLENELFCNIYYLKQLCDTLR 1266

Query: 61   FPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSH-HEENIVRKAYY 118
            FPDWPI  P+ LLKD L+AWK EVE+KPP MS+DDAYE L L +G   H+E+ +RKAY+
Sbjct: 1267 FPDWPIKDPVKLLKDTLDAWKKEVEKKPPMMSIDDAYEVLNLPQGQGPHDESKIRKAYF 1325

Homo sapiens (taxid: 9606)
>sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query118
328707311 2227 PREDICTED: dnaJ homolog subfamily C memb 1.0 0.052 0.745 1e-49
328707309 2223 PREDICTED: dnaJ homolog subfamily C memb 1.0 0.053 0.745 1e-49
242015466 1533 conserved hypothetical protein [Pediculu 1.0 0.076 0.694 3e-46
326922089 2240 PREDICTED: dnaJ homolog subfamily C memb 1.0 0.052 0.689 4e-45
322789534 894 hypothetical protein SINV_15055 [Solenop 1.0 0.131 0.686 7e-45
118085986 2240 PREDICTED: dnaJ homolog subfamily C memb 1.0 0.052 0.680 9e-45
301616683 2246 PREDICTED: LOW QUALITY PROTEIN: dnaJ hom 1.0 0.052 0.663 1e-44
332016527 2230 DnaJ-like protein subfamily C member 13 1.0 0.052 0.686 3e-44
345495329 2094 PREDICTED: LOW QUALITY PROTEIN: dnaJ hom 1.0 0.056 0.694 4e-44
224045481 2240 PREDICTED: dnaJ homolog subfamily C memb 1.0 0.052 0.663 9e-44
>gi|328707311|ref|XP_003243359.1| PREDICTED: dnaJ homolog subfamily C member 13 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 99/118 (83%)

Query: 1    MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAK 60
            MRR+LI KIA HIADFTP+LRGNNRA YQ+C IP VRYPQL+ E+F NIFYLRHLCD  +
Sbjct: 1214 MRRMLIEKIACHIADFTPKLRGNNRAYYQYCAIPVVRYPQLQSELFCNIFYLRHLCDVQR 1273

Query: 61   FPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALGLTRGSHHEENIVRKAYY 118
            FPDWPIN PI LLKDVLEAWK EVE+KPP MS+DDAY +LGL RG H++E   RKAYY
Sbjct: 1274 FPDWPINDPITLLKDVLEAWKNEVEKKPPVMSIDDAYMSLGLERGHHYDEATTRKAYY 1331

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328707309|ref|XP_001949942.2| PREDICTED: dnaJ homolog subfamily C member 13 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242015466|ref|XP_002428374.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512986|gb|EEB15636.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|326922089|ref|XP_003207284.1| PREDICTED: dnaJ homolog subfamily C member 13-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|322789534|gb|EFZ14801.1| hypothetical protein SINV_15055 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|118085986|ref|XP_418787.2| PREDICTED: dnaJ homolog subfamily C member 13 [Gallus gallus] Back     alignment and taxonomy information
>gi|301616683|ref|XP_002937780.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 13-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|332016527|gb|EGI57408.1| DnaJ-like protein subfamily C member 13 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345495329|ref|XP_003427483.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 13-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|224045481|ref|XP_002198696.1| PREDICTED: dnaJ homolog subfamily C member 13 [Taeniopygia guttata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query118
FB|FBgn0015477 2408 Rme-8 "Receptor mediated endoc 1.0 0.049 0.6 8.1e-36
WB|WBGene00004378 2279 rme-8 [Caenorhabditis elegans 1.0 0.051 0.508 6.4e-27
DICTYBASE|DDB_G0286293 2592 dnajc13 "DnaJ (Hsp40) homolog, 1.0 0.045 0.408 1.1e-20
TAIR|locus:2039543 2554 GRV2 "GRAVITROPISM DEFECTIVE 2 0.949 0.043 0.321 1.6e-14
FB|FBgn0015477 Rme-8 "Receptor mediated endocytosis 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 403 (146.9 bits), Expect = 8.1e-36, P = 8.1e-36
 Identities = 72/120 (60%), Positives = 94/120 (78%)

Query:     1 MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAK 60
             MRRLLI KIAAHIADFTPRLRG+  A Y +  IP + YPQLE E+F +I+YLRHLCDT K
Sbjct:  1208 MRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHLCDTQK 1267

Query:    61 FPDWPINQPIMLLKDVLEAWKAEVERKPPEMSVDDAYEALG--LTRGSHHEENIVRKAYY 118
             FP+WPI+ P+ LLK  L+AW+ EVE+KPP+M++  AY+ LG  LT+    +E+++RK+YY
Sbjct:  1268 FPNWPISDPVQLLKHTLDAWRKEVEKKPPQMTIQQAYQDLGIDLTKTPKPDESMIRKSYY 1327
GO:0006897 "endocytosis" evidence=NAS
GO:0006898 "receptor-mediated endocytosis" evidence=IMP
GO:0007298 "border follicle cell migration" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0031201 "SNARE complex" evidence=IDA
WB|WBGene00004378 rme-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286293 dnajc13 "DnaJ (Hsp40) homolog, subfamily C, member 13" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2039543 GRV2 "GRAVITROPISM DEFECTIVE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O75165DJC13_HUMANNo assigned EC number0.64701.00.0526yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 118
KOG1789|consensus 2235 100.0
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.53
PTZ00100116 DnaJ chaperone protein; Provisional 97.55
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 96.81
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 96.71
PF1344662 RPT: A repeated domain in UCH-protein 96.49
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 96.4
KOG0721|consensus 230 96.36
PTZ00037 421 DnaJ_C chaperone protein; Provisional 96.04
KOG1789|consensus 2235 95.82
KOG0715|consensus 288 95.39
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 95.3
KOG0723|consensus112 93.84
KOG0722|consensus 329 92.96
KOG3442|consensus132 92.96
KOG0720|consensus 490 91.4
KOG0716|consensus 279 91.3
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 90.42
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 87.14
>KOG1789|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-50  Score=370.08  Aligned_cols=118  Identities=50%  Similarity=0.994  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHhHhhccchhhccCccccccccccCccCccccccchhhhHHHHHHHhccCCCCCCCCccHHHHHHHHHHHH
Q psy3080           1 MRRLLIGKIAAHIADFTPRLRGNNRAVYQFCGIPAVRYPQLEQEMFVNIFYLRHLCDTAKFPDWPINQPIMLLKDVLEAW   80 (118)
Q Consensus         1 MR~~li~~i~~Hl~df~~rL~~~~~a~y~y~pip~i~YpeL~~elfC~~yYLr~lcd~~rfp~wpI~dpv~lL~~lL~~W   80 (118)
                      |||+||++|++||+||++||.+|++|+|||||||+|.||||++|||||+||||||||++|||||||+|||.||+++|.+|
T Consensus      1188 MRr~lIe~ia~HLaDf~~rL~sn~raLYqYcPiP~i~YPeL~~ElfCh~YYLr~LCD~~rFPdWPI~dpV~fL~~~L~~W 1267 (2235)
T KOG1789|consen 1188 MRRHLIERIAVHLADFSHRLTSNVRALYQYCPIPLIDYPELAQELFCHVYYLRHLCDKQRFPDWPIRDPVPFLRCCLATW 1267 (2235)
T ss_pred             HHHHHHHHHHHHHhccCHhHHHhHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHhccccCCCCcccCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHcCCCCCCC-CCh-HHHHhhcC
Q psy3080          81 KAEVERKPPEMSVDDAYEALGLTRGSH-HEE-NIVRKAYY  118 (118)
Q Consensus        81 r~E~~kkp~~mS~edAy~vLGL~~~a~-~se-~~IRrAY~  118 (118)
                      ++|++|||+.||+++||+||.++-+.. +|+ +.|||+||
T Consensus      1268 ~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~ 1307 (2235)
T KOG1789|consen 1268 YNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYY 1307 (2235)
T ss_pred             HHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHH
Confidence            999999999999999999999998774 355 99999997

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>PF13446 RPT: A repeated domain in UCH-protein Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>KOG0721|consensus Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>KOG1789|consensus Back     alignment and domain information
>KOG0715|consensus Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information
>KOG0723|consensus Back     alignment and domain information
>KOG0722|consensus Back     alignment and domain information
>KOG3442|consensus Back     alignment and domain information
>KOG0720|consensus Back     alignment and domain information
>KOG0716|consensus Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query118
2guz_A71 Mitochondrial import inner membrane translocase su 97.95
2guz_B65 Mitochondrial import inner membrane translocase su 97.94
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 97.57
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 97.37
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 97.32
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 97.05
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 97.02
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 97.0
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 96.94
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 96.69
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 96.64
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 96.55
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 96.52
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 96.42
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 96.24
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 96.15
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 95.71
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 94.4
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 91.81
3bvo_A 207 CO-chaperone protein HSCB, mitochondrial precurso; 91.02
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 90.58
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 90.51
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=97.95  E-value=6.1e-06  Score=53.16  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=25.6

Q ss_pred             CCCCCHHHHHHHcCCCC-CCCCChHHHHhhc
Q psy3080          88 PPEMSVDDAYEALGLTR-GSHHEENIVRKAY  117 (118)
Q Consensus        88 p~~mS~edAy~vLGL~~-~a~~se~~IRrAY  117 (118)
                      ...||.++||++|||++ ++  +.++||+||
T Consensus         8 ~~~m~~~~~y~iLgl~~~~a--~~~eIk~ay   36 (71)
T 2guz_A            8 DPKMNSKEALQILNLTENTL--TKKKLKEVH   36 (71)
T ss_dssp             CSSCCHHHHHHHTTCCTTTC--CHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCCCCCC--CHHHHHHHH
Confidence            35799999999999999 68  999999998
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query118
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 96.98
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 96.82
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 96.7
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 96.43
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 90.88
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=96.98  E-value=0.0002  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             HHHHHHHcCCCCCCCCChHHHHhhc
Q psy3080          93 VDDAYEALGLTRGSHHEENIVRKAY  117 (118)
Q Consensus        93 ~edAy~vLGL~~~a~~se~~IRrAY  117 (118)
                      ..++|+||||++++..+.++||+||
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaY   34 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAY   34 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            6789999999998877999999999
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure