Psyllid ID: psy310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MNSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALCR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEEEccEEEEEEccccccHHHHHHHHHcccccccEEEEEEccEEccccccccEEEEEEccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEcccccEEEEccccEEEcccEEEccccccccHHHHHHHHHccEEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEccEEEcccEEEEEccccccHHHHHHHHcccccccccEEEEEccEccccccccccccEEEHHHcccccccHHHHHccccEEcccccccHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHccccEEEEEEEEccEEEcccEEEEEccccccHHHHHHHHccccEccHHHHHHHHcHEEEEcc
Coil and Loop (DISEMBL)
mnsqeyvntnntnntnntnntnntnntntntntnnncepneKTILKSVSgrlrsgeltaimgpsgagkSTLLNILTgyktsgtegsitinghernlsQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFyrsdtnhaqrcflsgpwgtfeSSVLLALAMYNRIHEKTILKSVSgrlrsgeltaimgpsgagkSTLLNILTGYKILRQLWLLEYSHKDLALCR
Flexible Loop (DISEMBL)
mnsqeyvntnntnntnntnntnntnntntntntnnncepnEKTILKSVSGRLRSGELTaimgpsgagksTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKlgkdltkaARKDVVRTLfyrsdtnhaqrcflsgpwGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTaimgpsgagkSTLLNILTGYKILRQLWLLEYSHKDLALCR
Low Complexity Region (SEG)
MNSQEYVntnntnntnntnntnntnntntntntnnnCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALCR
Disordered region (IsUnstruct)
********************************************************************STLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLAL**
Disordered Region (DISOPRED)
*******************NTNNTNNTNTNTNTN****PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD*TKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSH****LC*
Disordered Region (DISEMBL)
********TNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALCR
Disordered Region (DISPRO)
*********************NNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALCR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSQEYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLEYSHKDLALCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q64343	666	ATP-binding cassette sub-	yes	N/A	0.429	0.154	0.552	2e-27
P45844	678	ATP-binding cassette sub-	yes	N/A	0.429	0.151	0.552	3e-27
Q9H172	646	ATP-binding cassette sub-	no	N/A	0.416	0.154	0.539	4e-24
Q9MAG3	1109	ABC transporter G family	yes	N/A	0.445	0.096	0.4	3e-16
Q7PC88	1426	ABC transporter G family	no	N/A	0.416	0.070	0.425	4e-16
Q9M2V6	662	ABC transporter G family	no	N/A	0.437	0.158	0.396	2e-15
Q9SJK6	1082	Putative white-brown comp	no	N/A	0.425	0.094	0.388	3e-15
Q9MAH4	590	ABC transporter G family	no	N/A	0.412	0.167	0.428	4e-15
Q8GU92	1464	Probable pleiotropic drug	no	N/A	0.404	0.066	0.438	8e-15
O80946	740	ABC transporter G family	no	N/A	0.45	0.145	0.376	2e-14

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L  FRK
Sbjct: 98  KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGMPRDLRCFRK 157

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           +SCYIMQD+ L  +LTV+EAM V+  LKL +      R+++V+ +
Sbjct: 158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEI 200

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.
Mus musculus (taxid: 10090)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L  FRK
Sbjct: 98  KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRK 157

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           +SCYIMQD+ L  +LTV+EAM V+  LKL +      R+++V+ +
Sbjct: 158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEI 200

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           KT+LK +SG+    EL  IMGPSGAGKST +NIL GY+ SG +G I +NG  R L  FRK
Sbjct: 82  KTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRK 141

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           +SCYIMQD+ L  +LTV EAM V+  LKL +   +  +K++V
Sbjct: 142 MSCYIMQDDMLLPHLTVLEAMMVSANLKLSEK--QEVKKELV 181

May be involved in macrophage lipid homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q9MAG3|AB24G_ARATH ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE--GSITINGHERNLS 97
           N K +L+ V+G ++ G +TA+MGPSGAGK++LL+ L G K  G +  G I ING + ++ 
Sbjct: 519 NGKQVLRCVTGSMKPGRITAVMGPSGAGKTSLLSALAG-KAVGCKLSGLILINGKQESIH 577

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
            ++K+  ++ QD+ +H NLTVEE +      +L  DL+KA +  VV  + 
Sbjct: 578 SYKKIIGFVPQDDVVHGNLTVEENLWFHAKCRLPADLSKADKVLVVERII 627

Arabidopsis thaliana (taxid: 3702)

>sp|Q7PC88|AB31G_ARATH ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKL 102
           +L +VSG    G LTA++G SGAGK+TL+++L G KT G TEG I I+GH +    F ++
Sbjct: 853 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARI 912

Query: 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           S Y+ Q++     +TVEE++  + +L+L K++TK  +K+ V
Sbjct: 913 SGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFV 953

May be a general defense protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2V6|AB17G_ARATH ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQFR 100
           KT+L  ++G  + GE+ AI+G SGAGKSTL++ L G    G+ +G++T+NG        R
Sbjct: 49  KTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLLR 108

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            +S Y+MQ++ L   LTVEE +  A   +L + L+K+ +++ V TL
Sbjct: 109 VISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJK6|WBC30_ARATH Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=3 SV=3

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGHERNLSQFR 100
           K IL+SV+G++  G ++A+MGPSGAGK+T L+ L G  T  T  G I ING   +++ ++
Sbjct: 498 KHILRSVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKATGCTRTGLILINGRNDSINSYK 557

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           K++ ++ QD+ +H NLTVEE +  +   +L   ++KA +  ++
Sbjct: 558 KITGFVPQDDVVHGNLTVEENLRFSARCRLSAYMSKADKVLII 600

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAH4|AB10G_ARATH ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNL 96
           E  EK ILK VS   RS E+TAI GPSGAGK+TLL IL G  + G   G + +NG   + 
Sbjct: 44  EKEEKVILKDVSCDARSAEITAIAGPSGAGKTTLLEILAGKVSHGKVSGQVLVNGRPMDG 103

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 141
            ++R++S ++ Q++ L   LTV+E +  +  L+L     K  RKD
Sbjct: 104 PEYRRVSGFVPQEDALFPFLTVQETLTYSALLRL-----KTKRKD 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKL 102
           +LK VSG  R G LTA+MG SGAGK+TL+++L G KT G  EG+ITI+G+ +    F ++
Sbjct: 894 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARV 953

Query: 103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
           S Y  Q++     +TV E++  +  L+L KD+    RK
Sbjct: 954 SGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRK 991

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O80946|AB1G_ARATH ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLS 97
           P  KT+L ++SG  R GE+ A++G SG+GKSTL++ L      G+ +G++ +NG      
Sbjct: 104 PKTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSR 163

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             + +S Y+MQD+ L   LTVEE +  A   +L + L K+ +K  V+ L
Sbjct: 164 MLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQAL 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
193636433	707	PREDICTED: ATP-binding cassette sub-fami	0.437	0.148	0.819	3e-43
328718019	684	PREDICTED: ATP-binding cassette sub-fami	0.437	0.153	0.819	3e-43
350403093	703	PREDICTED: ATP-binding cassette sub-fami	0.445	0.152	0.785	1e-41
383861366	704	PREDICTED: ATP-binding cassette sub-fami	0.445	0.151	0.794	1e-41
340728249	703	PREDICTED: ATP-binding cassette sub-fami	0.445	0.152	0.785	1e-41
66506366	703	PREDICTED: ATP-binding cassette sub-fami	0.445	0.152	0.775	5e-41
307197262	643	ATP-binding cassette sub-family G member	0.437	0.163	0.790	1e-40
307184774	704	ATP-binding cassette sub-family G member	0.445	0.151	0.785	1e-40
156550522	698	PREDICTED: ATP-binding cassette sub-fami	0.445	0.153	0.766	3e-40
326371147	689	ATP-binding cassette transporter subfami	0.454	0.158	0.779	5e-40

>gi|193636433|ref|XP_001950956.1| PREDICTED: ATP-binding cassette sub-family G member 4-like isoform 1 [Acyrthosiphon pisum]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/105 (81%), Positives = 96/105 (91%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           K ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK SG +GSITINGHERNLSQFRK
Sbjct: 79  KNILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKCSGVKGSITINGHERNLSQFRK 138

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           LSCYIMQDNQLHANL+VEEAM VAT+LKLG D++K ++  V++ +
Sbjct: 139 LSCYIMQDNQLHANLSVEEAMQVATSLKLGSDISKDSKYQVIQEI 183

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718019|ref|XP_003246360.1| PREDICTED: ATP-binding cassette sub-family G member 4-like isoform 2 [Acyrthosiphon pisum]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/105 (81%), Positives = 96/105 (91%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           K ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK SG +GSITINGHERNLSQFRK
Sbjct: 56  KNILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKCSGVKGSITINGHERNLSQFRK 115

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           LSCYIMQDNQLHANL+VEEAM VAT+LKLG D++K ++  V++ +
Sbjct: 116 LSCYIMQDNQLHANLSVEEAMQVATSLKLGSDISKDSKYQVIQEI 160

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403093|ref|XP_003486698.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Bombus impatiens]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 97/107 (90%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK++GTEGSIT+NGHERN S F
Sbjct: 65  NVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKSTGTEGSITMNGHERNFSAF 124

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQLHANLTV EAM VA+ LKLG  +++A +++V++ +
Sbjct: 125 RKLSCYIMQDNQLHANLTVAEAMKVASNLKLGSHVSQAEKEEVIQEI 171

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861366|ref|XP_003706157.1| PREDICTED: ATP-binding cassette sub-family G member 1-like [Megachile rotundata]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 96/107 (89%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK+ G EGSIT+NGHERNLS F
Sbjct: 65  NVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKSWGVEGSITMNGHERNLSAF 124

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQLHANLTV EAM VA+ LKLG  ++KA +++V++ +
Sbjct: 125 RKLSCYIMQDNQLHANLTVAEAMKVASNLKLGSHVSKAEKEEVIQEI 171

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728249|ref|XP_003402440.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Bombus terrestris]

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 97/107 (90%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK++GTEGSIT+NGHERN S F
Sbjct: 65  NVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKSTGTEGSITMNGHERNFSAF 124

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQLHANLTV EAM VA+ LKLG  +++A +++V++ +
Sbjct: 125 RKLSCYIMQDNQLHANLTVAEAMKVASNLKLGSHVSQAEKEEVIQEI 171

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66506366|ref|XP_397486.2| PREDICTED: ATP-binding cassette sub-family G member 4-like [Apis mellifera]

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 95/107 (88%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK++GTEGS+T+NGHER+LS F
Sbjct: 65  NAKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKSTGTEGSVTMNGHERDLSAF 124

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQLHANLTV EAM VA  LKLG  + K  +++V++ +
Sbjct: 125 RKLSCYIMQDNQLHANLTVAEAMKVAANLKLGSHVNKTEKEEVIQEI 171

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197262|gb|EFN78567.1| ATP-binding cassette sub-family G member 1 [Harpegnathos saltator]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/105 (79%), Positives = 93/105 (88%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG EG ITING ER+LS FRK
Sbjct: 1   KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGMEGLITINGQERDLSAFRK 60

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           LSCYIMQDNQLHANLTV EAM VA +LKLG  ++K  +++V++ +
Sbjct: 61  LSCYIMQDNQLHANLTVTEAMKVAASLKLGSHISKVEKEEVIQEI 105

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184774|gb|EFN71088.1| ATP-binding cassette sub-family G member 1 [Camponotus floridanus]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/107 (78%), Positives = 94/107 (87%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRS ELTAIMGPSGAGKSTLLNILTGYKT+GTEGSITINGHERNLS F
Sbjct: 64  NVKTILKSVSGRLRSNELTAIMGPSGAGKSTLLNILTGYKTTGTEGSITINGHERNLSAF 123

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQL+ NLTV EAM VA +LKL   + KA +++V++ +
Sbjct: 124 RKLSCYIMQDNQLYGNLTVAEAMKVAASLKLSSHIDKAEKEEVIQEI 170

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550522|ref|XP_001602320.1| PREDICTED: ATP-binding cassette sub-family G member 4-like [Nasonia vitripennis]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 96/107 (89%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT+G +GSIT+NG ERNLS F
Sbjct: 65  NVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTTGMQGSITMNGRERNLSAF 124

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           RKLSCYIMQDNQLH NLTV+EAM VA  LKLG+++ +A +++V++ +
Sbjct: 125 RKLSCYIMQDNQLHGNLTVQEAMKVAANLKLGRNVREAEKEEVIQEI 171

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326371147|gb|ADZ56942.1| ATP-binding cassette transporter subfamily G [Bombyx mori]

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 93/109 (85%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG EGSIT+NG ERNLS F
Sbjct: 54  NVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGMEGSITVNGMERNLSSF 113

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFY 148
           RKLSCYIMQDNQLH NLTVEEAM VAT+LKL    T+  ++ +  T+ +
Sbjct: 114 RKLSCYIMQDNQLHGNLTVEEAMGVATSLKLPSSTTRDEKEMLTETILH 162

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
FB|FBgn0025683	699	CG3164 [Drosophila melanogaste	0.433	0.148	0.759	3.3e-37
FB|FBgn0020762	832	Atet "ABC transporter expresse	0.5	0.144	0.6	5e-31
UNIPROTKB|I3LVB3	664	ABCG1 "Uncharacterized protein	0.425	0.153	0.575	1.5e-25
UNIPROTKB|E1BYW4	644	ABCG1 "Uncharacterized protein	0.425	0.158	0.575	4.9e-25
ZFIN|ZDB-GENE-070424-84	673	abcg1 "ATP-binding cassette, s	0.425	0.151	0.575	7e-25
MGI|MGI:107704	666	Abcg1 "ATP-binding cassette, s	0.425	0.153	0.566	1.4e-24
UNIPROTKB|G3V642	666	Abcg1 "ATP-binding cassette, s	0.425	0.153	0.566	1.4e-24
UNIPROTKB|E7ERE5	786	ABCG1 "ATP-binding cassette su	0.441	0.134	0.554	1.6e-24
UNIPROTKB|E9PGV9	824	ABCG1 "ATP-binding cassette su	0.441	0.128	0.554	1.8e-24
RGD|620294	666	Abcg1 "ATP-binding cassette, s	0.429	0.154	0.552	1.8e-24

FB|FBgn0025683 CG3164 [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
 Identities = 79/104 (75%), Positives = 87/104 (83%)

Query:    40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             N KTILK VSGRLRSGELTAIMGPSGAGKSTLLNIL+GYKTS  EGS+T+NG ERNLS F
Sbjct:    63 NAKTILKGVSGRLRSGELTAIMGPSGAGKSTLLNILSGYKTSSIEGSVTMNGAERNLSAF 122

Query:   100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
             RKLS YIMQDNQLH NLTV+EAM VAT LKL K  +K  +  ++
Sbjct:   123 RKLSAYIMQDNQLHGNLTVQEAMTVATNLKLSKKFSKPEKHSMI 166

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0020762 Atet "ABC transporter expressed in trachea" [Drosophila melanogaster (taxid:7227)]

 Score = 351 (128.6 bits), Expect = 5.0e-31, P = 5.0e-31
 Identities = 75/125 (60%), Positives = 92/125 (73%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KTILKSVSG+ R+GE+TAIMGPSGAGKSTL+NIL GYKT+   GS+ IN  ERNL +FRK
Sbjct:   163 KTILKSVSGKFRNGEITAIMGPSGAGKSTLMNILAGYKTAQLSGSVLINSKERNLRRFRK 222

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR----KDVVRTLFYRSDTNHAQR 157
             LSCYIMQD+ L ANLTV EAM VA  LKLGK++   A+    ++++ T+  +   N    
Sbjct:   223 LSCYIMQDDVLIANLTVREAMMVAANLKLGKNMISYAKVVVVEEILETIGLKESVN-TLT 281

Query:   158 CFLSG 162
             C LSG
Sbjct:   282 CNLSG 286

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|I3LVB3 ABCG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 298 (110.0 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 61/106 (57%), Positives = 80/106 (75%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G + INGH R+L  FRK
Sbjct:    98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGEVLINGHPRDLRCFRK 157

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 200

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BYW4 ABCG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 4.9e-25, P = 4.9e-25
 Identities = 61/106 (57%), Positives = 79/106 (74%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G I ING  R+L  FRK
Sbjct:    76 KTLLKGISGKFSSGELVAIMGPSGAGKSTLMNILAGYRETGMKGEILINGQPRDLRSFRK 135

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   136 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 7.0e-25, P = 7.0e-25
 Identities = 61/106 (57%), Positives = 77/106 (72%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG    G L AIMGPSGAGKSTL+NIL GY+ +G +G I INGH R+L  FRK
Sbjct:   105 KTLLKGISGNFTGGALVAIMGPSGAGKSTLMNILAGYRETGMKGEILINGHPRDLRSFRK 164

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++VR +
Sbjct:   165 VSCYIMQDDMLLPHLTVQEAMMVSANLKLQEKD---EGRREMVREI 207

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:107704 Abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Mus musculus (taxid:10090)]

 Score = 289 (106.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 60/106 (56%), Positives = 80/106 (75%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L  FRK
Sbjct:    98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGMPRDLRCFRK 157

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0009897 "external side of plasma membrane" evidence=ISO;IDA

GO:0010033 "response to organic substance" evidence=ISO

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IC

GO:0010872 "regulation of cholesterol esterification" evidence=IMP

GO:0010875 "positive regulation of cholesterol efflux" evidence=IDA

GO:0010888 "negative regulation of lipid storage" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IMP

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0033993 "response to lipid" evidence=ISO

GO:0034041 "sterol-transporting ATPase activity" evidence=ISO

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IMP

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IMP

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0034437 "glycoprotein transporter activity" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042987 "amyloid precursor protein catabolic process" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055037 "recycling endosome" evidence=IDA

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IDA

UNIPROTKB|G3V642 Abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 60/106 (56%), Positives = 80/106 (75%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L  FRK
Sbjct:    98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGMPRDLRCFRK 157

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 200

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

UNIPROTKB|E7ERE5 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 61/110 (55%), Positives = 81/110 (73%)

Query:    38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
             E   KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L 
Sbjct:   202 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR 261

Query:    98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
              FRK+SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   262 CFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 308

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E9PGV9 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 61/110 (55%), Positives = 81/110 (73%)

Query:    38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
             E   KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L 
Sbjct:   240 EEGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLR 299

Query:    98 QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTL 146
              FRK+SCYIMQD+ L  +LTV+EAM V+  LKL  KD     R+++V+ +
Sbjct:   300 CFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKD---EGRREMVKEI 346

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|620294 Abcg1 "ATP-binding cassette, subfamily G (WHITE), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 58/105 (55%), Positives = 79/105 (75%)

Query:    42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             KT+LK +SG+  SGEL AIMGPSGAGKSTL+NIL GY+ +G +G++ ING  R+L  FRK
Sbjct:    98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGMPRDLRCFRK 157

Query:   102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             +SCYIMQD+ L  +LTV+EAM V+  LKL +      R+++V+ +
Sbjct:   158 VSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--RDEGRREMVKEI 200

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0010872 "regulation of cholesterol esterification" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0010888 "negative regulation of lipid storage" evidence=ISO

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO;TAS

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0033993 "response to lipid" evidence=ISO

GO:0034041 "sterol-transporting ATPase activity" evidence=ISO

GO:0034374 "low-density lipoprotein particle remodeling" evidence=ISO

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISO

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0034437 "glycoprotein transporter activity" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042987 "amyloid precursor protein catabolic process" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=ISO

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45844	ABCG1_HUMAN	No assigned EC number	0.5523	0.4291	0.1519	yes	N/A
Q64343	ABCG1_MOUSE	No assigned EC number	0.5523	0.4291	0.1546	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-35
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	5e-31
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	9e-24
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	1e-21
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	2e-21
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-20
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-19
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-19
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	6e-18
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	7e-18
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-17
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	9e-17
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-16
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-16
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-16
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-16
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	5e-16
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-16
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-15
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-15
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-15
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-15
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	5e-15
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	5e-15
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	7e-15
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-14
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-14
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-14
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-14
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	6e-14
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-14
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	6e-14
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-13
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-13
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-13
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-13
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-13
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-13
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-13
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	5e-13
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	7e-13
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	8e-13
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	8e-13
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	9e-13
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-12
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-12
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-12
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-12
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-12
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-12
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-12
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-12
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-12
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-12
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-12
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	4e-12
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-12
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	5e-12
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-12
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	7e-12
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	7e-12
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	7e-12
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	8e-12
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	9e-12
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-12
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-11
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-11
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-11
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-11
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-11
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-11
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-11
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-11
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-11
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	5e-11
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-11
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	6e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	8e-11
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	1e-10
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	1e-10
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-10
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-10
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-10
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-10
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-10
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-10
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-10
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-10
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-10
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	4e-10
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-10
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	5e-10
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	5e-10
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	6e-10
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-10
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	6e-10
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	8e-10
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	9e-10
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-09
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-09
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-09
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-09
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-09
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-09
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-09
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-09
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-09
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	2e-09
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-09
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-09
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-09
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-09
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-09
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-09
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-09
COG4133	209	COG4133, CcmA, ABC-type transport system involved	4e-09
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-09
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	5e-09
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	5e-09
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-09
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	6e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	7e-09
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	8e-09
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-08
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-08
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-08
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-08
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-08
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-08
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	1e-08
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-08
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-08
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-08
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-08
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-08
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-08
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-08
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-08
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	3e-08
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-08
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	3e-08
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-08
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-08
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	4e-08
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	4e-08
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	4e-08
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	5e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	5e-08
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	7e-08
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	8e-08
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	8e-08
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-08
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	9e-08
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	9e-08
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	9e-08
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	9e-08
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-07
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-07
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-07
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	1e-07
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-07
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-07
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-07
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-07
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-07
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-07
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-07
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-07
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	2e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-07
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-07
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-07
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-07
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-07
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-07
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-07
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-07
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	4e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	4e-07
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-07
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	5e-07
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	5e-07
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	5e-07
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	5e-07
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	5e-07
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	6e-07
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	6e-07
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	6e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	7e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	7e-07
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-07
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	7e-07
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	7e-07
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	7e-07
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	7e-07
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	8e-07
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	8e-07
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	9e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	9e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	1e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-06
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-06
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	1e-06
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-06
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-06
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-06
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	1e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-06
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-06
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-06
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	1e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-06
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-06
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	2e-06
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-06
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-06
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-06
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	2e-06
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-06
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-06
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-06
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-06
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-06
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-06
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-06
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-06
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-06
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-06
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-06
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-06
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	3e-06
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	4e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	4e-06
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	4e-06
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	5e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	5e-06
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	5e-06
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	5e-06
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	5e-06
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	5e-06
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	5e-06
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-06
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	6e-06
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-06
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	6e-06
COG5265	497	COG5265, ATM1, ABC-type transport system involved	6e-06
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	6e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	7e-06
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	7e-06
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	7e-06
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	7e-06
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	9e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	9e-06
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	9e-06
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	1e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-05
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-05
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-05
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-05
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-05
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	1e-05
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-05
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-05
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	1e-05
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-05
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-05
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-05
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	2e-05
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-05
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-05
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-05
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-05
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	2e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-05
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	2e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-05
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-05
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-05
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-05
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-05
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-05
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	3e-05
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	3e-05
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-05
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	3e-05
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	3e-05
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	3e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	4e-05
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	4e-05
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	4e-05
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	4e-05
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-05
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	4e-05
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	4e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	4e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	5e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	5e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	5e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	5e-05
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	6e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-05
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	6e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	6e-05
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	6e-05
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	7e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	7e-05
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	7e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	7e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	7e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	7e-05
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	7e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	7e-05
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	8e-05
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	8e-05
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	8e-05
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	8e-05
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	8e-05
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	9e-05
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	9e-05
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	9e-05
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	9e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	9e-05
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	9e-05
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	9e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	9e-05
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-05
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	1e-04
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	1e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-04
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-04
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	1e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-04
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-04
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	1e-04
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-04
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	1e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	1e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	1e-04
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-04
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-04
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-04
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-04
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-04
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-04
PRK13914	481	PRK13914, PRK13914, invasion associated secreted e	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-04
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-04
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-04
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-04
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	3e-04
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	3e-04
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-04
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-04
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-04
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-04
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	4e-04
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	4e-04
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	4e-04
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	4e-04
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	4e-04
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	4e-04
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	4e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	4e-04
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	4e-04
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	4e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	4e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	4e-04
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	4e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	4e-04
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	5e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	5e-04
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	5e-04
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	6e-04
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	6e-04
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-04
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	6e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	6e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	6e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	6e-04
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	7e-04
COG4598	256	COG4598, HisP, ABC-type histidine transport system	7e-04
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	7e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	7e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	7e-04
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	7e-04
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	7e-04
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	7e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-04
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	8e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	8e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	8e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	8e-04
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	9e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	0.001
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	0.001
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	0.001
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.001
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	0.001
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.001
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	0.001
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.001
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.001
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	0.001
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	0.001
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.001
PRK00349	943	PRK00349, uvrA, excinuclease ABC subunit A; Review	0.001
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.001
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	0.001
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	0.001
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.001
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.001
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	0.001
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	0.001
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	0.001
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	0.001
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.001
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	0.001
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	0.002
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	0.002
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	0.002
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.002
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	0.002
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	0.002
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	0.002
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	0.002
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	0.002
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.002
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	0.002
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.002
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.002
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	0.002
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	0.002
PRK00098	298	PRK00098, PRK00098, GTPase RsgA; Reviewed	0.002
PRK00098	298	PRK00098, PRK00098, GTPase RsgA; Reviewed	0.002
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	0.002
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.002
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	0.002
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	0.002
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	0.003
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	0.003
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	0.003
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	0.003
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	0.003
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.003
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	0.003
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	0.003
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.003
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	0.003
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	0.003
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.003
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.003
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.004
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.004
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	0.004
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	0.004
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.004
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	0.004
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	0.004
pfam13207	114	pfam13207, AAA_17, AAA domain	0.004
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.004
cd02019	69	cd02019, NK, Nucleoside/nucleotide kinase (NK) is	0.004
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	0.004
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	0.004
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	0.004
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	0.004

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  124 bits (315), Expect = 1e-35
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFR 100
           K +LK+VSG+ + GELTAIMGPSGAGKSTLLN L G +T  G  G + ING   +   FR
Sbjct: 22  KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALK 129
           K+  Y+ QD+ LH  LTV E +  A  L+
Sbjct: 82  KIIGYVPQDDILHPTLTVRETLMFAAKLR 110

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  119 bits (301), Expect = 5e-31
 Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 2/105 (1%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE--GSITINGHERNLSQ 98
            K +LK+VSG  + GEL A+MG SGAGK+TL+N L      G +  GS+ +NG   +  +
Sbjct: 37  RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
            R +S Y+ QD+     LTV E +     L++ + +TK  +++ V
Sbjct: 97  MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERV 141

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 94.6 bits (236), Expect = 9e-24
 Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLS 97
               IL  VS  + SG++ AI+G SG+GK+TLL+ ++G    G  T G I  NG  R   
Sbjct: 18  KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           QF+K   Y+ QD+ L   LTV E +     L+L +  + A RK  V
Sbjct: 78  QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLS 97
            +KT L  VS  +  GE+  ++GP+GAGK+TLL IL G     T G I + G++  +  +
Sbjct: 16  GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-LKPTSGEILVLGYDVVKEPA 74

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVRTL 146
           + R+   Y+ Q+  L+  LTV E +     L  L K+  +   ++++   
Sbjct: 75  KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF 124

Length = 293

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQF 99
           ++ +L ++SG ++ G LTA+MG SGAGK+TLL++L G KT+G   G I ING   + + F
Sbjct: 19  KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-F 77

Query: 100 RKLSCYIMQDNQLHANLTVEEAM 122
           ++ + Y+ Q +    NLTV EA+
Sbjct: 78  QRSTGYVEQQDVHSPNLTVREAL 100

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 85.6 bits (213), Expect = 3e-20
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
            +   LK V+  + +GE  AI+GPSG+GKSTLLN+L G     T G + ING       E
Sbjct: 16  EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-DKPTSGEVLINGKDLTKLSE 74

Query: 94  RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
           + L++ R+    ++ Q+  L  +LTV E  NV   L +        ++  
Sbjct: 75  KELAKLRRKKIGFVFQNFNLLPDLTVLE--NVELPLLIAGKSAGRRKRAA 122

Length = 226

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 82.5 bits (205), Expect = 3e-19
 Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 36  NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--- 92
                +   LK VS  +  GE  AI+GPSG+GKSTLLNIL G     T G + ++G    
Sbjct: 11  GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDIS 69

Query: 93  ---ERNLSQFR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
              E+ L+ FR   +  ++ Q   L  +LT  E  NV   L L   + K  R++    L 
Sbjct: 70  KLSEKELAAFRRRHIG-FVFQSFNLLPDLTALE--NVELPLLLAG-VPKKERRERAEELL 125

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 85.2 bits (211), Expect = 6e-19
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 15/145 (10%)

Query: 12  TNNTNNTNNTNNTNNTNTNTNTN-----NNC-----EPNEKTILKSVSGRLRSGELTAIM 61
           T+ T+ +++ N+  +    +  +     N       +  ++ IL +V G ++ G LTA+M
Sbjct: 736 TDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM 795

Query: 62  GPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLH-ANLTV 118
           G SGAGK+TLLN+L    T+G  T G   +NG   + S F++   Y+ Q   LH    TV
Sbjct: 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYVQQ-QDLHLPTSTV 853

Query: 119 EEAMNVATALKLGKDLTKAARKDVV 143
            E++  +  L+  K ++K+ + + V
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYV 878

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 77.8 bits (193), Expect = 6e-18
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
           +KT L  +S  +  GE+  ++GP+GAGK+TL+ I+ G       G I + G +  +   +
Sbjct: 12  KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEIKVLGKDIKKEPEE 70

Query: 99  FRKLSCYIMQDNQLHANLTVEE 120
            ++   Y+ ++  L+ NLTV E
Sbjct: 71  VKRRIGYLPEEPSLYENLTVRE 92

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 78.0 bits (193), Expect = 7e-18
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HER 94
            +KT+L  VS  + +GE+ A++GPSG+GKSTLL  + G +     GSI I+G      E 
Sbjct: 11  GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLED 69

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
            L   R+    + QD  L  +LTV E  N+A  L
Sbjct: 70  ELPPLRRRIGMVFQDFALFPHLTVLE--NIALGL 101

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
                L  +S  +  GE  A++GPSG GK+TLL ++ G +     G I I+G        
Sbjct: 11  GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPP 69

Query: 92  HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD 151
             RN+         + QD  L  +LTV E  N+A  LKL        R  V   L     
Sbjct: 70  ERRNIG-------MVFQDYALFPHLTVAE--NIAFGLKLRGVPKAEIRARVRELLELVGL 120

Query: 152 TNHAQR 157
                R
Sbjct: 121 EGLLNR 126

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 77.7 bits (192), Expect = 9e-17
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 18/111 (16%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HE 93
            T +  +S  ++ GE   ++GPSG GK+TLL ++ G++   + G I ++G         +
Sbjct: 18  FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-SSGEILLDGEDITDVPPEK 76

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           R +         + Q   L  ++TVEE  NVA  LK+ K L KA  K  V 
Sbjct: 77  RPI-------GMVFQSYALFPHMTVEE--NVAFGLKVRKKLKKAEIKARVE 118

Length = 352

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
            +  L  +S  ++ GE   I+GP+G+GKSTLL +L G     T G + ++G    + +L 
Sbjct: 13  ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLK 71

Query: 98  QFRKLSCYIMQ--DNQLHANLTVEE 120
           + R+    + Q  D+Q     TVEE
Sbjct: 72  ELRRKVGLVFQNPDDQF-FGPTVEE 95

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 3/95 (3%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKL 102
           +L+ V+G  R G LTA+MG SGAGK+TL+++L G KT G  EG I I+G  +    F ++
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954

Query: 103 SCYIMQDNQLHA-NLTVEEAMNVATALKLGKDLTK 136
           S Y  Q N +H+  +TV E++  +  L+L K+++K
Sbjct: 955 SGYCEQ-NDIHSPQVTVRESLIYSAFLRLPKEVSK 988

Length = 1470

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
             K +LK+VSG+ + GELTAIMGPSGAGKSTLLN L G + 
Sbjct: 20  SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT 60

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKL 102
           IL  VS  +  GE+ A++G +GAGK+TLL  + G       GSI  +G +   L    + 
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERA 73

Query: 103 S---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC- 158
                Y+ +  ++   LTVEE  N+       +   + AR + V  LF R      Q   
Sbjct: 74  RAGIGYVPEGRRIFPELTVEE--NLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAG 131

Query: 159 FLSG 162
            LSG
Sbjct: 132 TLSG 135

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 46/127 (36%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
           PN K  LK VS  +  GE  A++GPSGAGKSTLL  L G     T GS+ I+G + N   
Sbjct: 11  PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLK 69

Query: 96  ---LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT 152
              L Q R+    I Q   L   L+V E  NV +         +  R+   R+LF     
Sbjct: 70  GKALRQLRRQIGMIFQQFNLIERLSVLE--NVLSG--------RLGRRSTWRSLFGLFPK 119

Query: 153 NHAQRCF 159
              QR  
Sbjct: 120 EEKQRAL 126

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 71.9 bits (177), Expect = 7e-16
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL 96
             +T L +VS  L++GE+ A++GP+G+GKSTLL  + G     T G I I+G    +  L
Sbjct: 10  GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPL 68

Query: 97  SQFRKLSCYIMQ 108
            + R+   Y+ Q
Sbjct: 69  EELRRRIGYVPQ 80

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
               K +LK VS  ++ GE  AI+GPSG+GKSTLL +L       T G I I+G    + 
Sbjct: 11  PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDL 69

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEE 120
           +L   RK   Y+ QD  L  + T+ E
Sbjct: 70  DLESLRKNIAYVPQDPFLF-SGTIRE 94

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ-FRKLSCYIMQDNQLH 113
           GE+ AI+GPSGAGKSTLLN++ G++T  + G I ING +   S    +    + Q+N L 
Sbjct: 25  GEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLFQENNLF 83

Query: 114 ANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           A+LTV +  N+   L  G  L    R+ V 
Sbjct: 84  AHLTVAQ--NIGLGLSPGLKLNAEQREKVE 111

Length = 231

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
          +T+L  VS  LR GE+ AI+GP+GAGKSTLL  L+G   S   G + +NG  R L+ +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-LSPDSGEVRLNG--RPLADW 69

Length = 258

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
            +T+LK V   +R GE+ AI+GPSG+GKSTLL ++ G       G + I+G       E 
Sbjct: 12  GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEA 70

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
            L + R+    + Q   L  +LTV E  NVA
Sbjct: 71  ELYRLRRRMGMLFQSGALFDSLTVFE--NVA 99

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQF 99
           E+TIL  V+G    GE+ A++GPSG+GKSTLLN L G  + +   G+I  N   +   Q 
Sbjct: 80  ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN-RKPTKQI 138

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTK 136
            K + ++ QD+ L+ +LTV E +   + L+L K LTK
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175

Length = 659

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNLS 97
            L  VS  +R GE   + GPSGAGK+TLL +L G  T  + G + I G +      R L 
Sbjct: 17  ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLP 75

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             R+    + QD +L  + TV E  NVA  L++     +  ++ V   L
Sbjct: 76  LLRRRIGVVFQDFRLLPDRTVYE--NVALPLEVRGKKEREIQRRVGAAL 122

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 70.6 bits (174), Expect = 7e-15
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RN 95
           +   K  +  +S  +  GE+  ++G +GAGK+T L +LTG +   T G+  ING+    +
Sbjct: 11  KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG-ELRPTSGTAYINGYSIRTD 69

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
               R+   Y  Q + L   LTV E +     LK
Sbjct: 70  RKAARQSLGYCPQFDALFDELTVREHLRFYARLK 103

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQF 99
           K  L  VS  L  G +  ++GP+GAGK+TL+ IL    T  + G+I I+G +  +   + 
Sbjct: 13  KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-TPPSSGTIRIDGQDVLKQPQKL 70

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALK 129
           R+   Y+ Q+  ++ N TV E ++    LK
Sbjct: 71  RRRIGYLPQEFGVYPNFTVREFLDYIAWLK 100

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           PN K  LK+++  +  GE  AI+GPSGAGKSTLL  +       + GSI + G +     
Sbjct: 12  PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLR 70

Query: 94  -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNV 124
            + L + R+    I Q   L   LTV E  NV
Sbjct: 71  GKKLRKLRRRIGMIFQHYNLIERLTVLE--NV 100

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 69.1 bits (170), Expect = 3e-14
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 8/106 (7%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----HERN 95
            +K +LK +S  +  GE+  I+GPSG+GKSTLL  L G +     GSIT++G     +++
Sbjct: 13  GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKD 71

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA-ARK 140
           + + R+    + Q   L  +LTV E  NV  A    K L+KA AR+
Sbjct: 72  ILKLRRKVGMVFQQFNLFPHLTVLE--NVTLAPVKVKKLSKAEARE 115

Length = 240

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 68.7 bits (168), Expect = 4e-14
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 6/90 (6%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF--RKLSCYIMQDNQL 112
           GE+TAI+GPSG+GKSTLLN++ G++T    G + ING +   +    R +S  + Q+N L
Sbjct: 24  GEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVS-MLFQENNL 81

Query: 113 HANLTVEEAMNVATALKLGKDLTKAARKDV 142
            A+LTVE+  NV   L  G  LT   R+ +
Sbjct: 82  FAHLTVEQ--NVGLGLSPGLKLTAEDRQAI 109

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 67.2 bits (165), Expect = 6e-14
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
            E  +L++VS  +  GE  AI+GPSG+GKSTL  ++ G     T G + ++G    + + 
Sbjct: 13  AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDP 71

Query: 97  SQFRKLSCYIMQDNQL 112
           ++      Y+ QD++L
Sbjct: 72  NELGDHVGYLPQDDEL 87

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 68.3 bits (168), Expect = 6e-14
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
             T L+ +S  +  GE  A++GPSG GKSTLL I+ G +   T G + ++G         
Sbjct: 16  AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTGPGPD 74

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
           +   Y+ Q + L   LTV +  NVA  L+L + + KA  ++    L 
Sbjct: 75  RG--YVFQQDALLPWLTVLD--NVALGLEL-QGVPKAEARERAEELL 116

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
               +L+ ++  +  GE  AI+GPSG GKSTLL ++ G     T G + ++G        
Sbjct: 14  GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDGRPVTGPG- 71

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
             +  Y+ Q++ L   LTV +  NVA  L+L +  +KA  ++  + L 
Sbjct: 72  PDIG-YVFQEDALLPWLTVLD--NVALGLEL-RGKSKAEARERAKELL 115

Length = 248

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
                K +LK+VSG  + GEL A+MG SGAGK+TL+N L   
Sbjct: 33  RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR 74

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
             IL  +S  L +GE+ A+ G +GAGK+TL  IL G     + GSI +NG      + RK
Sbjct: 13  TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRK 71

Query: 102 LSCYIMQD 109
              Y+MQD
Sbjct: 72  SIGYVMQD 79

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
           ++ IL  V   +  GE+ AI+G SG+GKSTLL ++ G      +G I I+G       E 
Sbjct: 20  DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGEDIPQLSEE 78

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
            L + RK    + Q   L ++LTV E  NVA  L+    L ++  +++V 
Sbjct: 79  ELYEIRKRMGVLFQQGALFSSLTVFE--NVAFPLREHTKLPESLIRELVL 126

Length = 263

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 41/115 (35%), Positives = 52/115 (45%), Gaps = 17/115 (14%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           P     LK V+  +  GE+ AI+GPSGAGKSTLL  L G     T G I  NG +     
Sbjct: 14  PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLK 72

Query: 94  -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
            + L + R+    I Q   L   L+V E  NV     LG+           R+LF
Sbjct: 73  GKELRKLRRDIGMIFQQFNLVPRLSVLE--NV----LLGRL----GYTSTWRSLF 117

Length = 258

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 21/118 (17%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------- 92
               +LK V+  +  GE   ++GPSG GKSTLL ++ G     T G I I+G        
Sbjct: 14  GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-EEPTSGEILIDGRDVTDLPP 72

Query: 93  -ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG---KDLTKAARKDVVRTL 146
            +R ++        + Q+  L+ ++TV E  N+A  LKL    K       K+V + L
Sbjct: 73  EKRGIA-------MVFQNYALYPHMTVYE--NIAFGLKLRGVPKAEIDKRVKEVAKLL 121

Length = 338

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----RN 95
                L +VS  +  GE   I+G SG+GKSTL  +L G     + GSI ++G      + 
Sbjct: 18  FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-EKPSSGSILLDGKPLAPKKR 76

Query: 96  LSQFRKLSCYIMQD--NQLHANLTVEEAMNVA 125
              F +    + QD  + L+   TV   ++  
Sbjct: 77  AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP 108

Length = 252

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNLSQF 99
           +  VS  LR GE   ++G SG+GKSTL  IL G     + GSI  +G +       L + 
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRL 365

Query: 100 RKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           R+    + QD  + L+  +TV +   +A  L++    + A R+  V  L
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGD--ILAEPLRIHGGGSGAERRARVAEL 412

Length = 539

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 10/108 (9%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HERNLSQF 99
           L  +S  ++SGEL A++GPSGAGKSTLL I+ G +T    G I +NG           + 
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-DAGRIRLNGRVLFDVSNLAVRD 76

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTL 146
           RK+  ++ Q   L  ++TV  A N+A  LK+ K+  ++A  +  V  L
Sbjct: 77  RKVG-FVFQHYALFPHMTV--ADNIAFGLKVRKERPSEAEIRARVEEL 121

Length = 345

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 66.3 bits (163), Expect = 5e-13
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           R+  +T+L  VS  LR GE+ AI+GP+GAGKSTLL  L+G 
Sbjct: 11  RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51

Length = 258

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----HER 94
           P  K  LK VS  +  GE   ++GP+G+GKSTLL +L G     T G + ++G     E+
Sbjct: 14  PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEK 72

Query: 95  NLSQFRKLSCYIMQ--DNQLHANLTVEE 120
           +L + R+    + Q  D+QL    TVE+
Sbjct: 73  SLLELRQKVGLVFQNPDDQL-FGPTVED 99

Length = 235

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
           P++  +L+ +S  +  GE  AI+G SG+GKSTLL +L G      +G I ++G + N   
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDID 541

Query: 96  LSQFRKLSCYIMQDNQL------------HANLTVEEAMNVA 125
           L+  R+   Y++QD  L            +   T EE +  A
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAA 583

Length = 709

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 51  RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HERNLSQFRKLSCYIMQ 108
            +  GE  AI+GPSGAGKSTLLN++ G+ T    GS+T+NG  H       R +S  + Q
Sbjct: 21  TVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVS-MLFQ 78

Query: 109 DNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
           +N L ++LTV +  N+   L  G  L  A R+
Sbjct: 79  ENNLFSHLTVAQ--NIGLGLNPGLKLNAAQRE 108

Length = 232

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 64.6 bits (158), Expect = 9e-13
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHE--RN 95
           ++  ILK  SG ++ GE+  ++G  G+G STLL  L          EG I  NG      
Sbjct: 18  SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
             ++     Y+ +++     LTV E ++ A   K
Sbjct: 78  AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 4/80 (5%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS 97
           P+ K  L  ++  +++G+LTA++G SGAGKSTLLN+L G+  + T+G I +NG + R+LS
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-LAPTQGEIRVNGIDLRDLS 389

Query: 98  --QFRKLSCYIMQDNQLHAN 115
              +RK   ++ Q+  L A 
Sbjct: 390 PEAWRKQISWVSQNPYLFAG 409

Length = 559

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
             K IL  +S  +  GE+T I+GP+G+GKSTLL  L G       G + ++G      + 
Sbjct: 13  GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSP 71

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEA 121
            +  K   Y+ Q       LTV E 
Sbjct: 72  KELAKKLAYVPQSPSAPFGLTVYEL 96

Length = 258

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 13/131 (9%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
               +L+ VS  ++ GE  AI+GP+GAGKSTLL  + G     T GSI + G  + L + 
Sbjct: 10  GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-TSGSIRVFG--KPLEKE 66

Query: 100 RKLSCYIMQDNQLHAN----LTVEE--AMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
           RK   Y+ Q  +   +    ++V +   M +     L + L+KA +  V   L     + 
Sbjct: 67  RKRIGYVPQ--RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE 124

Query: 154 HAQRCF--LSG 162
            A R    LSG
Sbjct: 125 LADRQIGELSG 135

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           P  +  L+ VS  +  GE   + GPSGAGKSTLL ++ G +   T G I +NGH+     
Sbjct: 12  PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG-EERPTRGKILVNGHDLSRLK 70

Query: 94  -RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            R +   R+    + QD +L  + TV E  NVA  L++     +  R+ V   L
Sbjct: 71  GREIPFLRRQIGVVFQDFRLLPDRTVYE--NVALPLRVIGKPPREIRRRVSEVL 122

Length = 223

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HERNLSQFRKLSCYIMQDNQL 112
           GE+ AIMGPSGAGKSTLLN++ G+      GSI +N   H       R +S  + Q+N L
Sbjct: 24  GEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVS-MLFQENNL 81

Query: 113 HANLTVEEAMNVATALKLGKDLTKAARKDVV 143
            A+LTV +  N+   L  G  L    ++ VV
Sbjct: 82  FAHLTVRQ--NIGLGLHPGLKLNAEQQEKVV 110

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             +T+L  +S  + +GE+  I+GP+GAGKSTLL  L G     + G I ++G +      
Sbjct: 10  GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-LKPSSGEILLDGKDLASLSP 68

Query: 100 RKLSCYI 106
           ++L+  I
Sbjct: 69  KELARKI 75

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 37  CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
           C    + +   +S  L +GE   + GP+G+GK+TLL ++ G       G+I ++G + + 
Sbjct: 10  CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDD 68

Query: 97  SQFRKLSCYIMQDNQLHANLTVEE 120
               +   Y+   N +   LTV E
Sbjct: 69  PDVAEACHYLGHRNAMKPALTVAE 92

Length = 207

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HER 94
             L+ VS  +  GE+ A++G +GAGK+TLL  + G       G I  +G        HER
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-VRPRSGRIIFDGEDITGLPPHER 75

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK-DVVRTLF 147
                R    Y+ +  ++   LTVEE  N+       +D     R  + V  LF
Sbjct: 76  ----ARLGIAYVPEGRRIFPRLTVEE--NLLLGAYARRDKEAQERDLEEVYELF 123

Length = 237

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNL 96
           +ILK V   ++ GE  AI+GPSG+GKSTLL +L G     + G + + G       E   
Sbjct: 24  SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDAR 82

Query: 97  SQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           +  R     ++ Q   L  NLT  E  NVA  L+L  + +  +R      L
Sbjct: 83  AALRARHVGFVFQSFHLIPNLTALE--NVALPLELRGESSADSRAGAKALL 131

Length = 228

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
           +K ILK V+  ++ GE+ AIMGP+G+GKSTL   + G      T G+I   G 
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQ 64

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK-- 101
           L  VS  +R GE+ A++G +GAGKSTL+ IL+G Y      G I I+G     S  R   
Sbjct: 24  LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDAL 81

Query: 102 ---LSCYIMQDNQLHANLTVEE 120
              ++  + Q+  L  NL+V E
Sbjct: 82  AAGIAT-VHQELSLVPNLSVAE 102

Length = 500

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           + +L  VS  LR GE+ AI+GP+GAGKSTLL  L+G   S   G +T+NG    L+ + 
Sbjct: 14  RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGV--PLNSWP 69

Length = 259

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 14/106 (13%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITING-----H 92
           +  +LK +   ++ GE+  I+GPSG+GKSTLL   N+L         G+I I+G      
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP----DSGTIIIDGLKLTDD 67

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA 138
           ++N+++ R+    + Q   L  +LTV E  N+  A    K ++KA 
Sbjct: 68  KKNINELRQKVGMVFQQFNLFPHLTVLE--NITLAPIKVKGMSKAE 111

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNL 96
           T L  VS  +  GE+  I+G SGAGKSTLL ++   +   T GS+ ++G +        L
Sbjct: 20  TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSGSVFVDGQDLTALSEAEL 78

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            Q R+    I Q   L ++ TV E  NVA  L+L   + KA  K  V  L
Sbjct: 79  RQLRQKIGMIFQHFNLLSSRTVFE--NVAFPLELAG-VPKAEIKQRVAEL 125

Length = 339

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------H 92
             + T LK VS  +  GE+  I+G SGAGKSTL+  + G +   T GS+ ++G       
Sbjct: 15  GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLS 73

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            + L + R+    I Q   L ++ TV E  NVA  L++   + KA  ++ V  L
Sbjct: 74  GKELRKARRRIGMIFQHFNLLSSRTVFE--NVALPLEIAG-VPKAEIEERVLEL 124

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING------H 92
            +K IL  ++  +  G++ AI+G SG+GKSTLLNI+    K     G + +NG      +
Sbjct: 9   GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS--GQVYLNGQETPPLN 66

Query: 93  ERNLSQFR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            +  S+FR  KL  Y+ Q+  L  N TVEE  N+   LK  K   K  R+     L
Sbjct: 67  SKKASKFRREKLG-YLFQNFALIENETVEE--NLDLGLKYKKLSKKEKREKKKEAL 119

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 64.1 bits (157), Expect = 7e-12
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 14/87 (16%)

Query: 35  NNCE---PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSIT 88
            + E   P+ KT+   ++  L +G+  A++GPSGAGK++LLN L G   Y     +GS+ 
Sbjct: 353 EDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-----QGSLK 407

Query: 89  INGHER---NLSQFRKLSCYIMQDNQL 112
           ING E    +   +RK   ++ Q+ QL
Sbjct: 408 INGIELRELDPESWRKHLSWVGQNPQL 434

Length = 588

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
            K ILK V+  ++ GE+ A+MGP+G+GKSTL   + G  K   TEG I   G 
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGE 64

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 9/111 (8%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
             K +L  ++  +  GE+  + GPSG+GK+TLL ++ G + S  EGS+ + G E      
Sbjct: 16  LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASE 74

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           + L Q R+   YI Q + L   LT  +  NV  AL+L  +L+    ++  R
Sbjct: 75  KELVQLRRNIGYIFQAHNLLGFLTARQ--NVQMALELQPNLSYQEARERAR 123

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 62.5 bits (153), Expect = 8e-12
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 11/112 (9%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNL 96
             L  VS  ++ GE   ++G SG+GKSTL   + G     T GSI  +G +      R  
Sbjct: 19  KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLR 77

Query: 97  SQFRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
              RK    + QD  + L+  +T+ E   +A  L++   L+K   +     L
Sbjct: 78  KIRRKEIQMVFQDPMSSLNPRMTIGEQ--IAEPLRIHGKLSKKEARKEAVLL 127

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 15/102 (14%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---R 94
            P+   IL  VS ++  GE  AI+GPSG+GKSTLL +L G++T  + GS+  +G +    
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES-GSVFYDGQDLAGL 520

Query: 95  NLSQFRKLSCYIMQDNQL-----------HANLTVEEAMNVA 125
           ++   R+    ++Q+ +L            A LT++EA   A
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAA 562

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 60.9 bits (149), Expect = 9e-12
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
            L  VS  +R GE+ A++G +GAGKSTL+ IL+G       G I ++G E +
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-YKPDSGEILVDGKEVS 65

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------H 92
           PN    L  ++  + +GE   ++GPSGAGKSTLL ++   +   T G+I +NG       
Sbjct: 11  PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLR 69

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT 152
            R +   R+    + QD +L  +  V E  NVA AL++     +  RK V   L      
Sbjct: 70  GRAIPYLRRKIGVVFQDFRLLPDRNVYE--NVAFALEVTGVPPREIRKRVPAAL-ELVGL 126

Query: 153 NHAQRCFLSGPWGTFESSVLLALAMYNR 180
           +H  R   +   G  +  V +A A+ N 
Sbjct: 127 SHKHRALPAELSGGEQQRVAIARAIVNS 154

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
           L  VS  +R GE+  ++GP+GAGK+TL N+++G+    T GS+  +G +   L       
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-LRPTSGSVLFDGEDITGLPPHEIAR 74

Query: 104 CYI---MQDNQLHANLTVEEAMNVATAL 128
             I    Q  +L   LTV E  NV  A 
Sbjct: 75  LGIGRTFQIPRLFPELTVLE--NVMVAA 100

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
          K ILK V+  ++ GE+ AIMGP+G+GKSTL   + G   Y+   TEG I  +G
Sbjct: 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV--TEGEILFDG 67

Length = 251

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFR 100
              L  VS  ++ GE   ++GPSG GK+TLL ++ G++T  T G I ++G +  NL   +
Sbjct: 13  FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-TSGEILLDGKDITNLPPHK 71

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           +    + Q+  L  +LTV E  N+A  L+L K      ++ V   L
Sbjct: 72  RPVNTVFQNYALFPHLTVFE--NIAFGLRLKKLPKAEIKERVAEAL 115

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
           P  +  L+ VS  +  GE  A++GPSGAGKSTLLN+L G+    TEGSI +NG    + +
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADAD 390

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEE----AMNVATALKLGKDLTKAARKDVVRTL 146
              +R    ++ Q   L A  T+ E    A   A+  ++ + L +A   + V  L
Sbjct: 391 ADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAAL 444

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +KT L  VS  +  GE+  ++GP+GAGK+TLL IL G
Sbjct: 17  DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG 53

Length = 293

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRK 101
           T LK +S  ++ GE   ++GPSG GK+TLL I+ G +   T G+I   G +   L   ++
Sbjct: 18  TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-TAGTIYQGGRDITRLPPQKR 76

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
               + Q   L  NLTV +  N+A  LK  + + +A   + V  L
Sbjct: 77  DYGIVFQSYALFPNLTVAD--NIAYGLK-NRGMGRAEVAERVAEL 118

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
            L+ VS  + SGEL  ++GPSG GK+TLLN++ G+ T  + GSI +NG  R +       
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNG--RRIEGPGAER 76

Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCFL 160
             + Q+  L   L V +  NVA  L+L + + KA R+++   +          H     L
Sbjct: 77  GVVFQNEALLPWLNVID--NVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133

Query: 161 SG 162
           SG
Sbjct: 134 SG 135

Length = 259

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL 96
             K  +  V+  +  GE   ++GPSG+GK+T L ++       T G I I+G    + + 
Sbjct: 12  GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TSGEILIDGEDISDLDP 70

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            + R+   Y++Q   L  +LTV E  N+AT  KL     K   K     L
Sbjct: 71  VELRRKIGYVIQQIGLFPHLTVAE--NIATVPKL-LGWDKERIKKRADEL 117

Length = 309

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 10/87 (11%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
             K +L  VS  +  G +T+I+GP+GAGKSTLL+++         G ITI+G E      
Sbjct: 12  GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGEITIDGLELTSTPS 70

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEE 120
           + L++  KLS  + Q+N +++ LTV +
Sbjct: 71  KELAK--KLSI-LKQENHINSRLTVRD 94

Length = 252

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +   LK V+  + +GE  AI+GPSG+GKSTLLN+L G
Sbjct: 17  KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53

Length = 226

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS 97
           P +K +LK +S  +  GE  AI+GPSG+GKSTL+ +L       T G I I+G + R++S
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDIS 397

Query: 98  QF--RKLSCYIMQDNQL 112
               RK    + QD  L
Sbjct: 398 LDSLRKRIGIVSQDPLL 414

Length = 567

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 58.4 bits (142), Expect = 8e-11
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           R   +T L +VS  L++GE+ A++GP+G+GKSTLL  + G
Sbjct: 8   RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 20/40 (50%), Positives = 31/40 (77%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
           ++ +L ++SG ++ G LTA+MG SGAGK+TLL++L G K 
Sbjct: 19  KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT 58

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHE 93
           +     ILK + G ++ GELT ++G  G+G STLL  +    T G     EG IT +G  
Sbjct: 70  DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGIT 128

Query: 94  RN--LSQFRKLSCYIMQDNQLH-ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS 150
                  +R    Y  +   +H  +LTV E ++ A   K     T   R D V    Y  
Sbjct: 129 PEEIKKHYRGDVVYNAE-TDVHFPHLTVGETLDFAARCK-----TPQNRPDGVSREEYAK 182

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFR 100
             L  V+  + +G L A++GPSG+GKSTLL I+ G +     G I +NG +  R  ++ R
Sbjct: 14  QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDR 72

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           K+  ++ Q   L  +LTV +  N+A  L++ K   KA  K  V  L
Sbjct: 73  KIG-FVFQHYALFKHLTVRD--NIAFGLEIRK-HPKAKIKARVEEL 114

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
               +T+L  +S  + +GE+  I+GP+GAGKSTLL  L G 
Sbjct: 8   GYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 18/117 (15%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGHERN 95
            +K  LK +S  +  GE+TA++GPSG GKSTLL +L         +  EG + ++G +  
Sbjct: 11  GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70

Query: 96  LSQFRKLS--CYI-M--QDNQLHANL---TVEEAMNVATALKLGKDLTKAARKDVVR 144
                 L     + M  Q      N    ++ +  NVA  L+L     K    + V 
Sbjct: 71  DLDVDVLELRRRVGMVFQ----KPNPFPGSIYD--NVAYGLRLHGIKLKEELDERVE 121

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 18/96 (18%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HERNL 96
           L  VS  + SGEL A++GPSG+GK+TLL ++ G +     G+I   G         ERN+
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNV 76

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
                   ++ Q   L  ++TV +  NVA  L++  
Sbjct: 77  G-------FVFQHYALFRHMTVFD--NVAFGLRVKP 103

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHERNLSQFR 100
           TILK  SG ++   +T ++GP  +GK+TLL  L G    +    G IT NG+  N    R
Sbjct: 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPR 238

Query: 101 KLSCYIMQDNQLHAN-LTVEEAMN 123
           K S YI Q N +H   +TV+E ++
Sbjct: 239 KTSAYISQ-NDVHVGVMTVKETLD 261

Length = 1470

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 19/96 (19%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING--------HE 93
           T +  VS  +R GE+  ++GP+GAGK+TL N++TG YK   + G++   G        H 
Sbjct: 18  TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHR 75

Query: 94  RN-LSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
              L   R       Q  +L   LTV E  NVA   
Sbjct: 76  IARLGIARTF-----QITRLFPGLTVLE--NVAVGA 104

Length = 250

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             + +L+ +S  +  GE+TA++GP+GAGKSTLL  + G     + G I I G  + + + 
Sbjct: 15  GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-SSGEIKIFG--KPVRKR 71

Query: 100 RKLSC--YIMQDNQLHAN----LTVEE--AMNVATALKLGKDLTKAARKDVVRTL 146
           RK     Y+ Q  +   +    +TV++   +         + L K  ++ V   L
Sbjct: 72  RKRLRIGYVPQ--KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEAL 124

Length = 254

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
             +   +L+ +S  + +GE  A++GPSG+GKSTL+N++  +      G I I+GH   + 
Sbjct: 11  PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDY 69

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
            L+  R+    + QD  L  N TV E  N+A
Sbjct: 70  TLASLRRQIGLVSQDVFLF-NDTVAE--NIA 97

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           Y     +  L  +S  ++ GE   I+GP+G+GKSTLL +L G 
Sbjct: 9   YPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG---TEGSITINGH----- 92
               ++ VS  +  GE+  I+G SG+GKSTL   L G    G   T G + ++G      
Sbjct: 21  RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80

Query: 93  -ERNLSQFR-KLSCYIMQDNQLHAN--LTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            ER + + R K    I QD     N  +T+ + +  A  L  GK     ARK  V  L
Sbjct: 81  SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-GKGSRAEARKRAVELL 137

Length = 539

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 3/46 (6%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
            + +K ILK V+  ++ GE+ AIMGP+G+GKSTL   + G   Y++
Sbjct: 9   SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV 54

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
           +  L  VS  +R G   A++GP+GAGKSTL ++LT    +  EG I++ GH
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGH 63

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 178 YNRIHEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           Y    EK   LK VS  +  GE  AI+GPSG+GKSTLLNIL G
Sbjct: 10  YGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 25/122 (20%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQF---- 99
           L  +S  +  GEL  I+GP+GAGK+T+++++TG KT   EGS+   G +   L +     
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQIAR 76

Query: 100 ----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
               RK      Q   +  NLTV E +          +L     K V  +LF+R      
Sbjct: 77  AGIGRKF-----QKPTVFENLTVFENL----------ELALPRDKSVFASLFFRLSAEEK 121

Query: 156 QR 157
            R
Sbjct: 122 DR 123

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
            +  K ILK V+  ++ GE+ A+MGP+G+GKSTL   + G   Y++
Sbjct: 9   SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV 54

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITIN 90
           N +   N K IL  +S ++  GE  AI+GP+GAGK+TLL++LTG    +SG    +T+ 
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD---VTLL 91

Query: 91 GHER 94
          G   
Sbjct: 92 GRRF 95

Length = 257

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           ++T + ++S  +    +  ++GP+GAGKSTLL ++TG     T G I  +GH        
Sbjct: 12  KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-LRPTSGEIIFDGHPWTRKDLH 70

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATAL 128
           K+   I +   L+ NLT  E + V T L
Sbjct: 71  KIGSLI-ESPPLYENLTARENLKVHTTL 97

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITIN 90
                E  E   LK VS  +  GE   ++G +GAGKSTLL +L G Y      G++T+ 
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVR 82

Query: 91 G 91
          G
Sbjct: 83 G 83

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 57.8 bits (140), Expect = 9e-10
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 5/81 (6%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-NLS--QFR 100
           +LK +   L +GE+ A++G +GAGKSTL+ I+ G     + G++ I G+    L+  +  
Sbjct: 26  VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAH 84

Query: 101 KLSCYIM-QDNQLHANLTVEE 120
           +L  Y++ Q+  L  NL+V+E
Sbjct: 85  QLGIYLVPQEPLLFPNLSVKE 105

Length = 510

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              IL  VS  + SG++ AI+G SG+GK+TLL+ ++G
Sbjct: 19  YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            K +LK VS  ++ GE  AI+GPSG+GKSTLL +L   
Sbjct: 14  PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +T+LK V   +R GE+ AI+GPSG+GKSTLL ++ G
Sbjct: 12  GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            +  + +L  VS  LR GE+ AI+GP+GAGKSTLL  L+G 
Sbjct: 10  SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50

Length = 259

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
           K ILK V+  ++ GE+ AIMGP+G+GKSTL   + G   Y++
Sbjct: 17  KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58

Length = 251

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLS- 97
            +   LK+ +  L  GE  AI+G SG+GKSTLL +L G      +GSIT+NG E  +L  
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-QQGSITLNGVEIASLDE 407

Query: 98  -QFRKLSCYIMQDNQL 112
              R+    + Q   L
Sbjct: 408 QALRETISVLTQRVHL 423

Length = 573

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ- 98
            + +LK VS  + +G+  AI+GPSG+GKST+L +L  +    + GSI I+G + R ++  
Sbjct: 13  GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLD 71

Query: 99  -FRKLSCYIMQDNQL 112
             R+    + QD  L
Sbjct: 72  SLRRAIGVVPQDTVL 86

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 20/40 (50%), Positives = 29/40 (72%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           R  +KT+L  VS  + +GE+ A++GPSG+GKSTLL  + G
Sbjct: 9   RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------ 93
            +  +LK VS  +  GE+ AI+G SG+GKSTLL++L G     T G +  NG        
Sbjct: 16  LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSS 74

Query: 94  RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGK 132
              ++ R     +I Q + L  + T  E  NVA  L +GK
Sbjct: 75  NERAKLRNKKLGFIYQFHHLLPDFTALE--NVAMPLLIGK 112

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNL---SQFRKLSCY 105
           + E+T I G SGAGKSTLL  + G +     G+I +NG       + +    Q RK+   
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIG-L 79

Query: 106 IMQDNQLHANLTVEEAMNVATALK 129
           + Q   L  +L V E  N+A  LK
Sbjct: 80  VFQQYALFPHLNVRE--NLAFGLK 101

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
            +K +LK ++  ++ GE  AI+GP+GAGK+TL+N+L  +     +G I I+G    + + 
Sbjct: 14  EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISR 72

Query: 97  SQFRKLSCYIMQD 109
              R +   ++QD
Sbjct: 73  KSLRSMIGVVLQD 85

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 18/97 (18%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING--------H 92
            T+L  +S  + +GEL A++G SG GK+TLL  + G+ K +G  G I I          H
Sbjct: 18  NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
           +R L+        + Q+  L  +L VE+  NVA  L+
Sbjct: 78  KRGLA-------LLFQNYALFPHLKVED--NVAFGLR 105

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 22/133 (16%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFR 100
           ILK +S  +  G+  A++G SG GKST++++L  +    T G I ++G    + NL   R
Sbjct: 18  ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-YDPTSGEILLDGVDIRDLNLRWLR 76

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGK-DLT-----KAARK----DVVRTLFYRS 150
                + Q+  L    T+ E  N+    + GK D T     +AA+K    D + +L    
Sbjct: 77  SQIGLVSQEPVLFDG-TIAE--NI----RYGKPDATDEEVEEAAKKANIHDFIMSLPDGY 129

Query: 151 DTNHAQR-CFLSG 162
           DT   +R   LSG
Sbjct: 130 DTLVGERGSQLSG 142

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 21/86 (24%)

Query: 39  PNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE--- 93
           P ++T  L +VS  +R GE  AI+G  G+GKSTLL +L G Y+   TEGS+ ++G +   
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDIRQ 531

Query: 94  -------RNLSQFRKLSCYIMQDNQL 112
                  RN+        Y+ QD +L
Sbjct: 532 IDPADLRRNIG-------YVPQDPRL 550

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
             E+ +LK++S  L+ GE  A++G SG+GKSTLL +LTG  K    +G IT++G  
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP 65

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 15/109 (13%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
            ++ ++  VS  ++ GE+  ++GP+GAGK+T   ++ G       G I ++G        
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-VKPDSGKILLDGQDITKLPM 69

Query: 92  HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
           H+R     R    Y+ Q+  +   LTVEE  N+   L++     K   +
Sbjct: 70  HKRA----RLGIGYLPQEASIFRKLTVEE--NILAVLEIRGLSKKEREE 112

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 23/107 (21%)

Query: 39  PNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL 96
           PN++   L +VS  +R+GE  AI+G  G+GKSTLL +L G YK   T GS+ ++G   ++
Sbjct: 13  PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGT--DI 68

Query: 97  SQF-----RKLSCYIMQDNQLHA-----NLTV-------EEAMNVAT 126
            Q      R+   Y+ QD  L       N+T+       E  +  A 
Sbjct: 69  RQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAE 115

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 24/139 (17%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
           P    +L  VS  L  GE  AI+GPSG+GKSTLL  L G      +G +T++G      +
Sbjct: 345 PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL-LDPLQGEVTLDGVPVSSLD 403

Query: 96  LSQFRKLSCYIMQDNQLHA-----NLTV-------EEAMNVATALKLGKDLTKAARKDVV 143
             + R+      QD  L       NL +       EE       + L   L   A  D +
Sbjct: 404 QDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWL--RALPDGL 461

Query: 144 RTLFYRSDTNHAQRCFLSG 162
            T+          R  LSG
Sbjct: 462 DTVL----GEGGAR--LSG 474

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 37  CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
           CE  E+T+   +S  L +GE   I GP+GAGK+TLL IL G       G +   G    +
Sbjct: 10  CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-DAGEVYWQGE--PI 66

Query: 97  SQFRK---LSC-YIMQDNQLHANLTVEE 120
              R+    +  Y+     +   LT  E
Sbjct: 67  QNVRESYHQALLYLGHQPGIKTELTALE 94

Length = 209

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +     ++ IL  V   +  GE+ AI+G SG+GKSTLL ++ G
Sbjct: 14  VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG 56

Length = 263

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             + +LK +S R+  G+  AI+GP+GAGKSTLL +L G +     G++ + G    +  F
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGPLSGTVKV-GETVKIGYF 390

Query: 100 RKLSCYIMQD-NQLHANLTVEEAM 122
                   Q  ++L  + TV E +
Sbjct: 391 D-------QHRDELDPDKTVLEEL 407

Length = 530

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERN 95
              K  + +++  +  GE   ++GPSG+GK+T + ++       T G I I+G    E++
Sbjct: 11  GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQD 69

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             + R+   Y++Q   L  ++TVEE  N+A   KL K   K   ++    L
Sbjct: 70  PVELRRKIGYVIQQIGLFPHMTVEE--NIALVPKLLK-WPKEKIRERADEL 117

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 54.0 bits (131), Expect = 6e-09
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             T L+ +S  +  GE  A++GPSG GKSTLL I+ G
Sbjct: 16  AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 21/117 (17%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------H 92
             T L  ++  +  GE   ++GPSG GK+T L ++ G +   T G I I G         
Sbjct: 12  NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPK 70

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL---GKDLTKAARKDVVRTL 146
           +R+++        + Q+  L+ ++TV +  N+A  LKL    KD      ++V   L
Sbjct: 71  DRDIAM-------VFQNYALYPHMTVYD--NIAFGLKLRKVPKDEIDERVREVAELL 118

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-------ILRQLWLLEYSHK 234
             K IL  +S  +  GE+T I+GP+G+GKSTLL  L G         +L    +   S K
Sbjct: 13  GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72

Query: 235 DLA 237
           +LA
Sbjct: 73  ELA 75

Length = 258

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           +K  + ++S  +  GE+  ++GP+GAGK+T   ++ G     TEG IT NG   +     
Sbjct: 14  DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQEIKN 72

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
           ++  Y+ ++  L+  +TVE+ +     LK G    +  +K
Sbjct: 73  RIG-YLPEERGLYPKMTVEDQLKYLAELK-GMPKAEIQKK 110

Length = 300

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +KT L  +S  +  GE+  ++GP+GAGK+TL+ I+ G 
Sbjct: 12  KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +L+ ++  +  GE  AI+GPSG GKSTLL ++ G
Sbjct: 15  GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51

Length = 248

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
               IL  +S  L +GE+ A+ G +GAGK+TL  IL G
Sbjct: 11  KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
                 +L+ VS  ++ GE  AI+GP+GAGKSTLL  + G
Sbjct: 8   SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
           +K +L  +S  ++ GE+   +GP+GAGK+T + I+ G       G IT +G    +N+  
Sbjct: 12  KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-IKPDSGEITFDGKSYQKNIEA 70

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD 133
            R++   +++    + NLT  E + +   L   + 
Sbjct: 71  LRRIGA-LIEAPGFYPNLTARENLRLLARLLGIRK 104

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 16/118 (13%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
           L  +S  +  GEL  ++GP+GAGK+TL++++TG KT   EG +  +G      L + R  
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLFDGDTDLTKLPEHRIA 79

Query: 103 SCYI---MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR 157
              I    Q   +  NLTV E +          +L     K V  +LF R      +R
Sbjct: 80  RAGIGRKFQKPTVFENLTVRENL----------ELALNRDKSVFASLFARLRAEERRR 127

Length = 249

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
          +  E   LK +S  +  GE   I+G +GAGKSTLL ++ G YK   T G + + G
Sbjct: 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--TSGKVKVTG 88

Length = 249

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
                L  +S  +  GE  A++GPSG GK+TLL ++ G
Sbjct: 11  GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 18/37 (48%), Positives = 26/37 (70%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E  +L++VS  +  GE  AI+GPSG+GKSTL  ++ G
Sbjct: 14  EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG 50

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +LK V+  +  GE   ++GPSG GKSTLL ++ G
Sbjct: 15  SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51

Length = 338

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           L  VS  +R GE+  ++GP+GAGK+TL N+++G+
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 23/131 (17%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-------ER 94
           K  L+ ++  L SGEL  ++GPSG GK+TLLN++ G+      GSIT++G        ER
Sbjct: 14  KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH-GSITLDGKPVEGPGAER 72

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
            +         + Q+  L     V++  NVA  L+L   + K  R ++   +  +     
Sbjct: 73  GV---------VFQNEGLLPWRNVQD--NVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG 120

Query: 155 AQRCF---LSG 162
           A++ +   LSG
Sbjct: 121 AEKRYIWQLSG 131

Length = 255

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF-- 99
           K ++ ++   + +GE   ++GPSG GK+T+L ++ G++T    G I ++G  ++++    
Sbjct: 27  KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-DSGRIMLDG--QDITHVPA 83

Query: 100 --RKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
             R ++  + Q   L  ++TV E  NVA  L++ K
Sbjct: 84  ENRHVNT-VFQSYALFPHMTVFE--NVAFGLRMQK 115

Length = 375

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
           E   LK +S  +  GE+   +GP+GAGK+T L IL+G     T G + + G    +R   
Sbjct: 33  EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-TSGEVRVAGLVPWKRRKK 91

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNV 124
             R++     Q  QL  +L V ++  +
Sbjct: 92  FLRRIGVVFGQKTQLWWDLPVIDSFYL 118

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 16/116 (13%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-------- 91
            ++ ++  VS  + SGE+  ++GP+GAGK+T   ++ G       G I ++         
Sbjct: 15  KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-VRPDSGKILLDDEDITKLPM 73

Query: 92  HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTL 146
           H+R     R    Y+ Q+  +   LTVE+  N+   L++  KDL KA RK+ +  L
Sbjct: 74  HKRA----RLGIGYLPQEASIFRKLTVED--NIMAVLEIREKDLKKAERKEELDAL 123

Length = 243

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 10/70 (14%)

Query: 57  LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNLS---QFRKLSCYIMQ 108
           +TA+ GPSG+GK++L+N++ G  T   EG I +NG      E+ +    + R++  Y+ Q
Sbjct: 26  ITALFGPSGSGKTSLINMIAGL-TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQ 83

Query: 109 DNQLHANLTV 118
           D +L  + TV
Sbjct: 84  DARLFPHYTV 93

Length = 352

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++ IL +V G ++ G LTA+MG SGAGK+TLLN+L  
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 811

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           I E+TIL  V+G    GE+ A++GPSG+GKSTLLN L G
Sbjct: 78  IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116

Length = 659

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
             +K IL  ++  +  G++ AI+G SG+GKSTLLNI+
Sbjct: 8   FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII 44

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
             L  VS  +R GE+ A++G +GAGKSTL+ IL+G 
Sbjct: 14  KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +K  LK +S  +  GE+TA++GPSG GKSTLL +L
Sbjct: 12  DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL 46

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITING 91
          NE  ILK ++  +  GE+ AIMGP+G+GKSTL  ++ G+      EG I   G
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG 70

Length = 252

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 21/111 (18%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING-------- 91
           +  IL+ VS  +  GE+T ++G +G GK+TLL  L G        GSI ++G        
Sbjct: 12  QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS--GSIRLDGEDITKLPP 69

Query: 92  HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
           HER     R    Y+ Q  ++   LTVEE  N    L  G        + +
Sbjct: 70  HER----ARAGIAYVPQGREIFPRLTVEE--N----LLTGLAALPRRSRKI 110

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL----TGYKTSGTEGSITINGHE-- 93
            +K  LK ++  +   ++TA++GPSG GKSTLL  L         +  EG + ++G    
Sbjct: 18  GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77

Query: 94  ---RNLSQFRK 101
               ++ + R+
Sbjct: 78  DPKVDVVELRR 88

Length = 253

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
           LK+VS  +  G+   I+GP+G+GKS LL  + G+    + G I +NG +  NL   ++  
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73

Query: 104 CYIMQDNQLHANLTVEEAMNVATALKL 130
            Y+ Q+  L  ++TV +  N+A  LK 
Sbjct: 74  SYVPQNYALFPHMTVYK--NIAYGLKK 98

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
           ++ VS R+R GE+  ++GP+GAGK+T + +LT      T G  T+ GH+  R   + R+ 
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-LKPTSGRATVAGHDVVREPREVRRR 74

Query: 103 SCYIMQDNQLHANLTVEEAM 122
              + QD  +   LT  E +
Sbjct: 75  IGIVFQDLSVDDELTGWENL 94

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ---FRKLSC 104
           VS  +  GE+ A++G SG GKSTLL +L G++   T G I ++G +  LS    +++   
Sbjct: 38  VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-TAGQIMLDGVD--LSHVPPYQRPIN 94

Query: 105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
            + Q   L  ++TVE+  N+A  LK  K L KA     V
Sbjct: 95  MMFQSYALFPHMTVEQ--NIAFGLKQDK-LPKAEIASRV 130

Length = 377

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           L+ VS  +  GE  A++GPSGAGKSTLLN+L G+
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF 371

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
             T L  +S  +  GE+  ++GP+GAGK+T + ++ G       G +  +G   +++   
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-ILPDSGEVLFDGKPLDIAARN 70

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVRTL 146
           ++  Y+ ++  L+  + V + +     LK L K   + AR+ +   L
Sbjct: 71  RIG-YLPEERGLYPKMKVIDQLVYLAQLKGLKK---EEARRRIDEWL 113

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  VS  +R GE+ A++G +GAGKSTL+ IL+G
Sbjct: 24  LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG 56

Length = 500

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +K +LK +S  +  GE+  I+GPSG+GKSTLL  L G
Sbjct: 13  GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50

Length = 240

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 31  TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN 90
           T T     P EK  L  +S  +  G+   ++G +GAGKSTLLN + G     T G I I+
Sbjct: 8   TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-LKPTSGQILID 66

Query: 91  GHE-RNLSQFRK--LSCYIMQDNQ--LHANLTVEEAMNVA 125
           G +    S  ++  L   + QD        LT+EE + +A
Sbjct: 67  GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106

Length = 263

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL---SQFR 100
              VS  ++ GE+ A++G +GAGKSTL+ IL G Y+     G I ++G E  +       
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAI 77

Query: 101 KLSCYIM-QDNQLHANLTVEEAMNVATALKLGKDL---TKAARKDVVR 144
           +L   ++ Q   L   LTV E  N+   L+  K      + AR  +  
Sbjct: 78  RLGIGMVHQHFMLVPTLTVAE--NIILGLEPSKGGLIDRRQARARIKE 123

Length = 501

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + K  LK VS  +  GE  A++GPSGAGKSTLL  L G
Sbjct: 12  NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            E +ILK V   ++ GE  AI+GPSG+GKSTLL +L G
Sbjct: 21  GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58

Length = 228

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQ 98
            +  L  VS   + G +   +GP+GAGKST + I+TGY      GS+ + G +  +N  +
Sbjct: 14  TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-LPPDSGSVQVCGEDVLQNPKE 72

Query: 99  FRKLSCYIMQDNQLHANLTVEE 120
            ++   Y+ + N L+ ++ V E
Sbjct: 73  VQRNIGYLPEHNPLYLDMYVRE 94

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--- 95
           PN   +LK++S  ++ GE   I+G +G+GKS+LL  L       + GSI I+G + +   
Sbjct: 14  PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIG 72

Query: 96  LSQFRKLSCYIMQDNQL 112
           L   R     I QD  L
Sbjct: 73  LHDLRSRISIIPQDPVL 89

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
              L +VS  +  GE   I+G SG+GKSTL  +L G 
Sbjct: 20  FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56

Length = 252

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           A Y +I     L+ VS  +  GE+ A++G +GAGK+TLL  + G
Sbjct: 11  AGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG 51

Length = 237

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
          LKSV+  +  GE+ A++G +GAGKSTL+ +L+G     T+G+ITIN    N
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-TKGTITINNINYN 70

Length = 510

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 15/115 (13%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TG-YKTSGTEGSITINGHERN 95
           +LK +S  + +GE+ AI+G SG+GKSTL+NIL       +G Y+ +G + + T++     
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA-TLDADA-- 79

Query: 96  LSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR 149
           L+Q R+    +I Q   L ++LT  + + V  A+  G  L +  R    + L  R
Sbjct: 80  LAQLRREHFGFIFQRYHLLSHLTAAQNVEVP-AVYAG--LERKQRLLRAQELLQR 131

Length = 648

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---N 95
           P+   IL ++S R++ GE+  I+G SG+GKSTL  ++  +      G + ++GH+    +
Sbjct: 12  PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-ENGRVLVDGHDLALAD 70

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATA 127
            +  R+    ++Q+N L  N ++ +  N+A A
Sbjct: 71  PAWLRRQVGVVLQENVLF-NRSIRD--NIALA 99

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKL-- 102
           L  +S   R+G++ A+MG +GAGKSTLL IL+G       GSI I+G E   +       
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALA 78

Query: 103 --SCYIMQDNQLHANLTVEE 120
                I Q+  L   +TV E
Sbjct: 79  AGVAIIYQELHLVPEMTVAE 98

Length = 501

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
             +K  L+ +S  L++GE  AI+GPSG+GKSTL  ++ G     T GS+ ++G +     
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI-WPPTSGSVRLDGADLKQWD 386

Query: 99  FRKLS---CYIMQDNQLHANLTVEEAMNVA 125
                    Y+ QD +L    TV E  N+A
Sbjct: 387 RETFGKHIGYLPQDVELFPG-TVAE--NIA 413

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + T +  +S  ++ GE   ++GPSG GK+TLL ++ G
Sbjct: 16  GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53

Length = 352

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           Y +     IL  VS  +  GE+ A++G +GAGK+TLL  + G
Sbjct: 10  YGKSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            K  LK VS  +  GE   ++GP+G+GKSTLL +L G
Sbjct: 16  RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52

Length = 235

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           IL  VS ++  GE  AI+GPSG+GKSTLL +L G+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKIL 223
            ++E  ILK ++  +  GE+ AIMGP+G+GKSTL  ++ G   YKIL
Sbjct: 16  SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL 62

Length = 252

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           P    +LK ++     GE+ A++G +GAGKSTLL  L G       G++ I+G       
Sbjct: 2   PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-LRPQSGAVLIDGEPLDYSR 60

Query: 94  RNLSQFRKLSCYIMQ--DNQLHA 114
           + L + R+    + Q  D+QL A
Sbjct: 61  KGLLERRQRVGLVFQDPDDQLFA 83

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 37  CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HER 94
           C   E+ + + +S  L +GE   + GP+G GK+TLL IL G       G +  NG     
Sbjct: 8   CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAE 66

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEE 120
              +  +   Y+     L   L+  E
Sbjct: 67  QRDEPHRNILYLGHLPGLKPELSALE 92

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             K +LK +S  +  G+   ++G +GAGKSTLL ++ G +    EG +T  G    +  F
Sbjct: 11  GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG-ELEPDEGIVTW-GSTVKIGYF 68

Query: 100 RKLS 103
            +LS
Sbjct: 69  EQLS 72

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 37  CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HE 93
           CE + + +   +S  L +GE   + GP+G+GK+TLL IL G       G + +NG     
Sbjct: 8   CERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDF 66

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEE 120
           +  S  R L  Y+     +   L+V E
Sbjct: 67  QRDSIARGLL-YLGHAPGIKTTLSVLE 92

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNL- 96
             +K ILK +S  L++GE   I+GPSG+GKSTL  +L G +    T GS+ ++G +    
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQW 403

Query: 97  --SQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
              Q  +   Y+ QD +L    T+ E  N+A
Sbjct: 404 DREQLGRHIGYLPQDVELFDG-TIAE--NIA 431

Length = 580

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE---R 94
            +E   LK+VS  +  GE  AI+G +G+GKST+  ILTG  K     G I I+G      
Sbjct: 19  NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITISKE 76

Query: 95  NLSQFRKLSCYIMQ--DNQLHANLTVEE 120
           NL + RK    I Q  DNQ     TVE+
Sbjct: 77  NLKEIRKKIGIIFQNPDNQF-IGATVED 103

Length = 271

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-------GYKTSGT---EGSITI 89
            EK  LK+++  +   ++TA++GPSG GKSTLL  L        G +  G    +G   I
Sbjct: 12  GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG-QDI 70

Query: 90  NGHERNLSQFRKLSCYIMQDNQLHANLTVEEAM-NVATALKLGKDLTKAARKDVVRTL 146
              + ++ + R+    + Q      N        N+A   +L     K    ++V   
Sbjct: 71  YDKKIDVVELRRRVGMVFQ----KPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEES 124

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
           +L+ V+G  R G LTA+MG SGAGK+TL+++L G K
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 930

Length = 1470

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           T +  VS  +R GE+  ++GP+GAGK+TL N++TG
Sbjct: 18  TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG 52

Length = 250

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 20/38 (52%), Positives = 28/38 (73%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            K IL  +S ++  GE  AI+GP+GAGK+TLL++LTG 
Sbjct: 43  GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80

Length = 257

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E   LK VS  +  GE   ++G +GAGKSTLL +L G
Sbjct: 34  EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHE---RNLSQFR 100
           L +VS ++R+GE+ ++ G +GAGKSTL+ +L+G    GT EG I   G E    N+    
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 141
           +    I     +H  L + + ++V   + LG ++T     D
Sbjct: 81  RAGIAI-----IHQELALVKELSVLENIFLGNEITPGGIMD 116

Length = 506

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +  L  VS  +R G   A++GP+GAGKSTL ++LT 
Sbjct: 13  ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTR 49

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             ++ E   LK +S  +  GE   I+G +GAGKSTLL ++ G
Sbjct: 34  GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75

Length = 249

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
           LK ++  +  GEL AI+GP G+GKS+LL+ L G +     GS+++ G 
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG-ELEKLSGSVSVPGS 67

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
              E   +  VS  LR GE   ++G SG+GKSTL  IL G 
Sbjct: 300 ERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340

Length = 539

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  +S  ++SGEL A++GPSGAGKSTLL I+ G
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50

Length = 345

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
                   L  VS  ++ GE   ++G SG+GKSTL   + G
Sbjct: 13  TGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TGYKILRQLWLLEYS 232
               K +L  VS  +  G +T+I+GP+GAGKSTLL+++       +G   +  L L    
Sbjct: 10  SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP 69

Query: 233 HKDLA 237
            K+LA
Sbjct: 70  SKELA 74

Length = 252

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  VS  + SGEL A++GPSG+GK+TLL ++ G
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
           +  IL ++S  LR+GE   I GPSG GKSTLL I+     S T G++   G +
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGED 70

Length = 225

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 17/24 (70%), Positives = 22/24 (91%)

Query: 197 GELTAIMGPSGAGKSTLLNILTGY 220
           GE+ AI+GPSGAGKSTLLN++ G+
Sbjct: 25  GEIVAILGPSGAGKSTLLNLIAGF 48

Length = 231

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 17/36 (47%), Positives = 27/36 (75%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +L+ +S  +  GE+TA++GP+GAGKSTLL  + G
Sbjct: 17  RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52

Length = 254

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
             T L  +S  +R+GE+  ++GP+GAGKSTLL  + G    G  GSI   G  + L  + 
Sbjct: 8   VSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPG-SGSIQFAG--QPLEAWS 63

Length = 248

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              LK V+  +  GE+ AI+GPSGAGKSTLL  L G
Sbjct: 17  HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52

Length = 258

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + +LK +S R+  G+  AI+GP+GAGKSTLL +L G
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370

Length = 530

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +K ILK +S  L++GE   I+GPSG+GKSTL  +L G
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384

Length = 580

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 39  PNEKTI--LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--R 94
             E++I  ++ +S  +  GE+   +G +GAGKST L +LTG     T G + +NG +  R
Sbjct: 32  RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG-LLLPTSGKVRVNGKDPFR 90

Query: 95  NLSQFRKLSCYIM-QDNQLHANLTVEEAMNVATALK 129
              ++ +    +M Q  QL  +L   +++ V   + 
Sbjct: 91  RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY 126

Length = 325

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (117), Expect = 7e-07
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 23/104 (22%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITINGH---- 92
                L +VS  + +GE+  ++G SGAGKSTL+   N+L       T G + ++G     
Sbjct: 16  RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL----ERPTSGRVLVDGQDLTA 71

Query: 93  --ERNLSQFRKLSCYIMQDNQLHANL----TVEEAMNVATALKL 130
             E+ L + R+    I Q    H NL    TV +  NVA  L+L
Sbjct: 72  LSEKELRKARRQIGMIFQ----HFNLLSSRTVFD--NVALPLEL 109

Length = 343

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
          +K IL+ ++  +R GE+ AIMGP+G+GKSTL   L G   Y+   T G++   G
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKG 64

Length = 248

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 3/48 (6%)

Query: 47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
          +V+  +R  E+ +++GP+GAGK+T+ N LTG YK +G  G+I + G  
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQH 68

Length = 255

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----S 97
           + +++ VS  + SGE+  ++GP+GAGK+T   ++ G       G+I I+  + +L    +
Sbjct: 16  RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-VPRDAGNIIIDDEDISLLPLHA 74

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
           + R+   Y+ Q+  +   L+V +  N+   L++  DL+   R+D    L       H
Sbjct: 75  RARRGIGYLPQEASIFRRLSVYD--NLMAVLQIRDDLSAEQREDRANELMEEFHIEH 129

Length = 241

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +  ILK  SG ++ GE+  ++G  G+G STLL  L  
Sbjct: 16  GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 7/57 (12%)

Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-------GSITING 91
          + IL+ +S R+  G +TA++G +GAGKSTLL  L G  T G         G +T+NG
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70

Length = 272

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +K  LK ++  +   ++TA++GPSG GKSTLL  L
Sbjct: 19  DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53

Length = 253

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE---- 93
           P+    LK ++ +   GE+ A++GP+GAGKSTL     G  K   T G + I G      
Sbjct: 12  PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYD 69

Query: 94  -RNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
            ++L + RK    + Q  D+QL A  TVEE
Sbjct: 70  KKSLLEVRKTVGIVFQNPDDQLFAP-TVEE 98

Length = 275

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 17/37 (45%), Positives = 27/37 (72%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           KT+   ++  L +G+  A++GPSGAGK++LLN L G+
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399

Length = 588

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +   LK+ +  L  GE  AI+G SG+GKSTLL +L G 
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387

Length = 573

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           + +L++VS  L  GE   ++G +GAGKSTLL IL G +     G +T     R       
Sbjct: 16  RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG-ELEPDSGEVTRPKGLR----VGY 70

Query: 102 LSCYIMQDNQLHANLTVEEAM 122
           LS    Q+  L    TV + +
Sbjct: 71  LS----QEPPLDPEKTVLDYV 87

Length = 530

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 168 ESSVLLALAMYN-RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNI 216
           E+S LL L        +  IL ++S  LR+GE   I GPSG GKSTLL I
Sbjct: 3   ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKI 52

Length = 225

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLS 97
           + T+L  V   +R G L  ++GP+GAGK+TLL  + G  T    G++ + G      +  
Sbjct: 15  DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVEALSAR 73

Query: 98  QFRKLSCYIMQDNQLHANLTVEE 120
              +    + QD  L     V +
Sbjct: 74  AASRRVASVPQDTSLSFEFDVRQ 96

Length = 402

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 14/93 (15%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERNLS 97
           +L  +S  + SG++ A++GPSG+GK+TLL I+ G +   T G I  +G      H R+  
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARD-- 73

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKL 130
             RK+  ++ Q   L  ++TV +  N+A  L +
Sbjct: 74  --RKVG-FVFQHYALFRHMTVFD--NIAFGLTV 101

Length = 353

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 12/105 (11%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LS----- 97
           +L +VS  +  GE+ AI+G SG+GKSTLL++L G  T  T G +  NG   + LS     
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKA 82

Query: 98  --QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
             + +KL  +I Q + L  + T  E  NVA  L +GK        
Sbjct: 83  ELRNQKLG-FIYQFHHLLPDFTALE--NVAMPLLIGKKKPAEINS 124

Length = 233

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFR 100
           IL ++S  +R+GE  AI GPSG GKSTLL I+     S T G++   G + +      +R
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDVSTLKPEAYR 76

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           +   Y  Q   L  + TVE+ +     ++  +    AA   + R
Sbjct: 77  QQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLAR 119

Length = 223

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGHE---RNL 96
           +L  V+  +    +TA+MGPSG+GKSTLL +       Y  +   G + ++G +    ++
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
            + R+    + Q      NL++ E  NVA  LKL +
Sbjct: 78  IELRRRVQMVFQIPNPIPNLSIFE--NVALGLKLNR 111

Length = 250

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRKL 102
           +L+ VS  L  GE+TA++GPSG+GKST++ +L   Y+  G  G + ++G   +  + + L
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG--GQVLLDGKPISQYEHKYL 86

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
           +  V+ ++R GE+   +GP+GAGK+T + +LT      T G+  + G++  R   + R+ 
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-LRPTSGTARVAGYDVVREPRKVRRS 67

Query: 103 SCYIMQDNQLHANLTVEEAM 122
              + Q   +  +LT  E +
Sbjct: 68  IGIVPQYASVDEDLTGRENL 87

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 48  VSGRLRSGELTAIMGPSGAGKST----LLNILTGYKTSGTEGSITINGHERNLSQFR-KL 102
           ++  L+ GE+ A++G SG+GKS     +L +L     + T G I ++G        R + 
Sbjct: 5   LNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRH 63

Query: 103 SCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
              IMQ+     +   T+     + T   LGK L+K AR  ++  L
Sbjct: 64  IATIMQNPRTAFNPLFTMGNHA-IETLRSLGK-LSKQARALILEAL 107

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
           N++ IL ++S ++  GE   I+GP+GAGKSTLL+++TG    G    +T+ G  R
Sbjct: 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325

Length = 490

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           K  LK+++  +  GE  AI+GPSGAGKSTLL
Sbjct: 15  KQALKNINLNINPGEFVAIIGPSGAGKSTLL 45

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           K  L  ++  +++G+LTA++G SGAGKSTLLN+L G
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369

Length = 559

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +LK +S  + +GE+ AI+G SG+GKSTL+NIL
Sbjct: 23  VLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54

Length = 648

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +K  L+ +S  L++GE  AI+GPSG+GKSTL  ++ G
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 12/92 (13%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGT--------EGSIT 88
           + +T+L  +   ++ GE+ AI+GPSG+GK+TLL   N+L     +GT        + + +
Sbjct: 14  HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARS 72

Query: 89  INGHERNLSQFRKLSCYIMQDNQLHANLTVEE 120
           ++  +  + Q R+   ++ Q+  L  + TV E
Sbjct: 73  LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLE 104

Length = 250

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ER 94
            + I  ++S  +  G++TAIMGPSG GK+TLL  L G + +   G I  +G         
Sbjct: 19  NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLR-LIGGQIAPDHGEILFDGENIPAMSRS 77

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
            L   RK    + Q   L  ++ V +  NVA  L+
Sbjct: 78  RLYTVRKRMSMLFQSGALFTDMNVFD--NVAYPLR 110

Length = 269

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERN-LS 97
              +L +V+  +  GE+  +MGPSG GKSTLL+ + G         G + +N    + L 
Sbjct: 14  GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
             ++    + QD  L  +L+V + +       L   L   AR++  
Sbjct: 74  AAQRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAA 115

Length = 213

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQFRKL 102
           ++ VS     GE+T ++G +GAGK+TLL ++         G +TI+G +  R+ S  R+ 
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-LIPDSGKVTIDGVDTVRDPSFVRRK 76

Query: 103 SCYIMQDNQLHANLTVEE 120
              +  +  L+A LT  E
Sbjct: 77  IGVLFGERGLYARLTARE 94

Length = 245

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK 101
             +  VS  ++ GE   ++G SG GKSTL  ++ G  +   T G I   G  +++++  K
Sbjct: 27  KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEG--KDITKLSK 82

Length = 268

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 69  STLLNILTGYKTSGTEGSITINGHERN----LSQFRKLSCYIMQDNQLHANLTVEE 120
           STLL ++TG     T G+I ++G +          RK    + QD QL   LTV E
Sbjct: 1   STLLKLITG-LLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRE 55

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC 104
           LK V+  ++ GE  +++G SG GKSTLLN+++G     T G + + G +       ++  
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRM-- 57

Query: 105 YIMQDNQLHANLTVEEAMNVATALK-LGKDLTKAARKDVVR 144
            + Q+  L   LTV E  N+A A+  +  DL+K+ R+ +V 
Sbjct: 58  VVFQNYSLLPWLTVRE--NIALAVDRVLPDLSKSERRAIVE 96

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 8/128 (6%)

Query: 16  NNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
           NN    ++ +N    +N      P    +LK+++ ++  GE+ AI G +G+GK++LL ++
Sbjct: 28  NNDRKHSSDDNNLFFSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83

Query: 76  TGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE--AMNVATALKLGKD 133
            G +   +EG I  +G     SQF  +    +++N +   ++ +E    +V  A +L +D
Sbjct: 84  LG-ELEPSEGKIKHSGRISFSSQFSWIMPGTIKENII-FGVSYDEYRYKSVVKACQLEED 141

Query: 134 LTKAARKD 141
           +TK   KD
Sbjct: 142 ITKFPEKD 149

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           + I+  V      G LT ++GP+G+GKSTLL +L G       G++ + G + +    R 
Sbjct: 14  RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-LRPDAGTVDLAGVDLHGLSRRA 72

Query: 102 LSCYIM---QDNQLHANLTVEEAM 122
            +  +    QD+     LTV + +
Sbjct: 73  RARRVALVEQDSDTAVPLTVRDVV 96

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            K  +  +S  +  GE+  ++G +GAGK+T L +LTG
Sbjct: 14  TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG 50

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 17/24 (70%), Positives = 23/24 (95%)

Query: 197 GELTAIMGPSGAGKSTLLNILTGY 220
           GE+TAI+GPSG+GKSTLLN++ G+
Sbjct: 24  GEITAIVGPSGSGKSTLLNLIAGF 47

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           +  +LK +   ++ GE+  I+GPSG+GKSTLL
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL 43

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            L+ VS  + SGEL  ++GPSG GK+TLLN++ G+
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54

Length = 259

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/37 (54%), Positives = 29/37 (78%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E+ +LK++S  L+ GE  A++G SG+GKSTLL +LTG
Sbjct: 14  EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 16  NNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
           N      N ++    +N +    P    +LK++S +L  G+L A+ G +G+GKS+LL ++
Sbjct: 417 NKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472

Query: 76  TGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE--AMNVATALKLGKD 133
            G +   +EG I  +G      Q   +    ++DN +   L+ +E    +V  A +L +D
Sbjct: 473 MG-ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG-LSYDEYRYTSVIKACQLEED 530

Query: 134 LTKAARKD 141
           +     KD
Sbjct: 531 IALFPEKD 538

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 12/80 (15%)

Query: 37  CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
           CE +E+ +   +S  L +GEL  I GP+GAGK++LL IL G       G +   G    +
Sbjct: 9   CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQG--EPI 65

Query: 97  SQFRKLSCYIMQDNQLHANL 116
            +         Q ++ H +L
Sbjct: 66  RR---------QRDEYHQDL 76

Length = 204

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK +S ++++GE  A++G +G GKSTLL +LT       +G I +NG    ++ +    
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQ--PIADYS--- 408

Query: 104 CYIMQDNQLHANLTV 118
                +  L   ++V
Sbjct: 409 -----EAALRQAISV 418

Length = 574

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGY 220
            +  GE  AI+GPSGAGKSTLLN++ G+
Sbjct: 21  TVERGERVAILGPSGAGKSTLLNLIAGF 48

Length = 232

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 17/32 (53%), Positives = 26/32 (81%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +L+ VS  L  GE+TA++GPSG+GKST++ +L
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           +T+L +VS  L+SGE  A++G SG GKSTL  +L G ++  ++G+++  G    L++  +
Sbjct: 25  QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRG--EPLAKLNR 81

Length = 268

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHE---RNLSQ 98
             L  +   +R GE   + G +GAGKSTL+ IL+G    GT +G I  +G      N+  
Sbjct: 15  KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLT 135
             +    I     +H  LT+   ++VA  + LG ++T
Sbjct: 75  TERAGIVI-----IHQELTLVPELSVAENIFLGNEIT 106

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLSQFRK 101
           LK +S  +  G  TA++GP+GAGKSTLL  L G       G + + G   +  N    R 
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRS 79

Query: 102 LSCYIMQ--DNQLHANLTVEE 120
               + Q  D+Q+ ++ TV +
Sbjct: 80  KVGLVFQDPDDQVFSS-TVWD 99

Length = 274

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 197 GELTAIMGPSGAGKSTLLNILTGYKILRQ--LWLLEYSHKDLA 237
           GE+ AIMGPSGAGKSTLLN++ G+       + + + SH  LA
Sbjct: 24  GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA 66

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
               K +LK +S  +  G+   ++G +GAGKSTLL ++ G
Sbjct: 9   TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +K IL+ ++  +R GE+ AIMGP+G+GKSTL   L G
Sbjct: 11  VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49

Length = 248

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS--QFR-K 101
           +K VS  LR G+  AI+G +G+GKSTL  +L G     T G I IN H  +     FR K
Sbjct: 29  VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGEILINDHPLHFGDYSFRSK 87

Query: 102 LSCYIMQDNQLHANLTVEEAMNVAT----ALKLGKDLTKAAR-KDVVRTL 146
               I QD     N ++   + +       L+L  DL    R K +  TL
Sbjct: 88  RIRMIFQD----PNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETL 133

Length = 267

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------RNLSQ 98
           L+ V+  +R GE+  + G SGAGKSTLL ++ G +   + G I  +GH+      R +  
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPF 76

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATAL 128
            R+    I QD+ L  + TV +  NVA  L
Sbjct: 77  LRRQIGMIFQDHHLLMDRTVYD--NVAIPL 104

Length = 222

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC--- 104
               L    +TAI G SG+GK+TL+ ++ G  T   EG I +NG  R L   RK      
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-TRPDEGEIVLNG--RTLFDSRKGIFLPP 72

Query: 105 ------YIMQDNQLHANLTVEEAMN 123
                 Y+ Q+ +L  +L+V   + 
Sbjct: 73  EKRRIGYVFQEARLFPHLSVRGNLR 97

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGT----EGSITINGH 92
           P E+  L  V+  + SG   AI+G +G+GKSTLL  L G    TSGT    E  IT    
Sbjct: 17  PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK 76

Query: 93  ERNLSQFRK 101
            + L   RK
Sbjct: 77  NKKLKPLRK 85

Length = 290

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF- 99
            K IL  +S  L +G++TA++GP+G GKSTLL       T    G++ +    + +S   
Sbjct: 14  TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGD--KPISMLS 70

Query: 100 -RKLSCYI 106
            R+L+  +
Sbjct: 71  SRQLARRL 78

Length = 255

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 24/148 (16%)

Query: 13  NNTNNTNNTNNTNNTNTNTNTNNN---------CEPNEKTILKSVSGRLRSGELTAIMGP 63
               +T     T       +  ++           P+ +T+L  ++  +R GE   I G 
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427

Query: 64  SGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQ--------FRKLSCYIMQDNQLH 113
           SGAGK++LL  L G    G+ G I++        L Q         R+  CY        
Sbjct: 428 SGAGKTSLLRALAGLWPWGS-GRISMPADSALLFLPQRPYLPQGTLREALCY----PNAA 482

Query: 114 ANLTVEEAMNVATALKLGKDLTKAARKD 141
            + +  E + V   + LG    +   +D
Sbjct: 483 PDFSDAELVAVLHKVGLGDLAERLDEED 510

Length = 604

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              ILK + G ++ GELT ++G  G+G STLL  +  
Sbjct: 73  TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS 109

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + +   +S  L +GE   + GP+G+GK+TLL ++ G
Sbjct: 14  GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50

Length = 207

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
            + +LK VS  + +G+  AI+GPSG+GKST+L +L
Sbjct: 13  GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +L  VS  L  GE  AI+GPSG+GKSTLL  L G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ- 98
            + IL  +S  +  G+  AI+G SGAGKST+L +L  +      GSITI+G + R+++Q 
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-YDVNSGSITIDGQDIRDVTQQ 333

Query: 99  -FRKLSCYIMQDNQLHANLT----VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
             R+    + QD  L  N T    ++     ATA ++G     A   D +++L    DT 
Sbjct: 334 SLRRAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392

Query: 154 HAQR-CFLSG 162
             +R   LSG
Sbjct: 393 VGERGLKLSG 402

Length = 497

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITING------H 92
             +  VS  L+ GE+  I+G SG+GKS L   + G           G I  +G       
Sbjct: 19  KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78

Query: 93  ERNLSQFR--KLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
           E+ L + R  +++  I QD    L+  +T+ + +        GK L+K   K+    L 
Sbjct: 79  EKELRKIRGKEIA-MIFQDPMTSLNPVMTIGDQI-AEVLRLHGKGLSKKEAKERAIELL 135

Length = 316

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
               ++ VS  +  GE+  I+G SG+GKSTL   L G 
Sbjct: 21  RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL 58

Length = 539

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            +  +L+ +S  +  GE  AI+G SG+GKSTLL +L G 
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522

Length = 709

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
              L  VS  ++ GE   ++GPSG GK+TLL ++ G+
Sbjct: 13  FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YK---ILRQLWLLEYS 232
           N +   T L  +S  +R+GE+  ++GP+GAGKSTLL  + G              L  +S
Sbjct: 4   NDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWS 63

Query: 233 HKDLALCR 240
             +LA  R
Sbjct: 64  AAELARHR 71

Length = 248

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
          K ILK +S +   G +  I+GPSGAGKSTL+  L       TEGSI I+G +
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDGVD 66

Length = 241

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
               +L+ +S  + +GE  A++GPSG+GKSTL+N++ 
Sbjct: 13  DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +LK VS  +  GE+ AI+G SG+GKSTLL++L G
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 30/114 (26%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ERN 95
           ++K +   +  GE   ++GPSG GKSTLL ++ G +   T G I I G         +R+
Sbjct: 19  VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-TSGEIWIGGRVVNELEPADRD 77

Query: 96  LSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALK---LGKD-----LTKAAR 139
           ++         M  Q+  L+ +++V E  N+A  LK   + K      + +AAR
Sbjct: 78  IA---------MVFQNYALYPHMSVRE--NMAYGLKIRGMPKAEIEERVAEAAR 120

Length = 356

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           T LK +S  ++ GE   ++GPSG GK+TLL I+ G
Sbjct: 18  TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             L  V+  + +G L A++GPSG+GKSTLL I+ G
Sbjct: 14  QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG 48

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E+T+   +S  L +GE   I GP+GAGK+TLL IL G
Sbjct: 14  ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG 50

Length = 209

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +K +L  +S  ++ GE+   +GP+GAGK+T + I+ G
Sbjct: 9   TYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           K  L+ ++  L SGEL  ++GPSG GK+TLLN++ G+
Sbjct: 14  KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50

Length = 255

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHKDL 236
           +LK ++     GE+ A++G +GAGKSTLL  L G        +L     L+YS K L
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           EK  LK+++  +   ++TA++GPSG GKSTLL
Sbjct: 13  EKEALKNINLDIPKNQVTALIGPSGCGKSTLL 44

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
                   LK ++  +  GEL AI+GP G+GKS+LL+ L G
Sbjct: 13  GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +L  +S  + SG++ A++GPSG+GK+TLL I+ G
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50

Length = 353

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           LL  A+  R  E+T+L  +   + +G+  A++G SG GKSTLL +L G
Sbjct: 13  LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60

Length = 257

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL 96
          +LK VS +  +G++ +I+G SG+GKST L  +   +   + GSI +NG E  L
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRL 72

Length = 256

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC 104
           +K +S  LR G+  AI+G +G+GKSTL  +L G     T G + I+ H  +   +   S 
Sbjct: 29  VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGELLIDDHPLHFGDYSYRSQ 87

Query: 105 ---YIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAAR-KDVVRTL 146
               I QD    L+    + + ++    L+L  DL    R K ++ TL
Sbjct: 88  RIRMIFQDPSTSLNPRQRISQILDF--PLRLNTDLEPEQREKQIIETL 133

Length = 267

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHE---- 93
           N+   L +V   +  GE+ A++GPSG+GKSTLL  L+G  T        I + G      
Sbjct: 15  NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74

Query: 94  ----RNLSQFRKLSCYIMQDNQLHANLTVEE 120
               R++ + R  + YI Q   L   L+V E
Sbjct: 75  GRLARDIRKSRANTGYIFQQFNLVNRLSVLE 105

Length = 262

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
             ++  L S+S  +  GE  A++G SG+GKSTL+N++  +      G I ++GH+
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-YEPDSGQILLDGHD 395

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGT--EGSITINGHERNLS 97
            +L ++   +  GE+  I+GPSG+GKSTLL   N L    TSG      + +N  + +  
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDER 73

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             R+ +  + Q   L  +LT  E  NV       +  +K   +   R L
Sbjct: 74  LIRQEAGMVFQQFYLFPHLTALE--NVMFGPLRVRGASKEEAEKQAREL 120

Length = 240

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
          +LK+VS  + +GE  A+ GPSGAGKSTLL  L   Y      G I +  HE
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVR-HE 70

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            L  VS  +R GE   + GPSGAGK+TLL +L G 
Sbjct: 17  ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  +S  +  GEL  I+GP+GAGK+T+++++TG
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           Y+   +K +LK ++  ++ GE  AI+GP+GAGK+TL+N+L  +
Sbjct: 12  YD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
                T+L  +S  + +GEL A++G SG GK+TLL  + G+
Sbjct: 14  AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E   L +VS  +R GE  AI+G  G+GKSTLL +L G
Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 13/40 (32%), Positives = 26/40 (65%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           R  ++ ++  VS  ++ GE+  ++GP+GAGK+T   ++ G
Sbjct: 9   RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E   LK +S  +  GE+   +GP+GAGK+T L IL+G
Sbjct: 33  EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  +S   R+G++ A+MG +GAGKSTLL IL+G
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52

Length = 501

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 3/42 (7%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           YN   ++ IL ++S ++  GE   I+GP+GAGKSTLL+++TG
Sbjct: 270 YN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308

Length = 490

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
           P +K ILK +S     G    ++G +GAGKSTLL I+ G            NG E   + 
Sbjct: 15  PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FNG-EARPAP 66

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 134
             K+  Y+ Q+ QL    TV E  NV   +   KD 
Sbjct: 67  GIKVG-YLPQEPQLDPTKTVRE--NVEEGVAEIKDA 99

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 38 EPNEKTI--LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
             +KT+  +  VS  ++ GE+T ++GP+GAGK+T L +L G       G  T++G
Sbjct: 12 RDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-LEPDAGFATVDG 66

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
            G+ + ++G SG GKSTLLN L    +L 
Sbjct: 84  KGKTSVLVGQSGVGKSTLLNALLPELVLA 112

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
           +  +LK ++  L  GE+ A++GPSG+GKST+  +L       T G + ++G
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDG 542

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
           L  ++  +R GE  A++GPSGAGKSTL  +L  +      G I ++G
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDG 401

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G  TSG  GSI   G
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-SGSIQFAG 59

Length = 248

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----TSGTEGSITINGH 92
          N+K  L SVS      E+TA++GPSG+GKSTLL  +             GSI  NGH
Sbjct: 16 NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72

Length = 252

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER 94
          P+ + +LK +S  ++ G+   I GPSG GKS+L   L G    G+ G I +   E 
Sbjct: 11 PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGED 65

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 7/117 (5%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ----FR 100
           L  VS  +  GE+  ++G +GAGK+TLL  L G     T G I  +G +    Q     R
Sbjct: 21  LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG-DPRATSGRIVFDGKDITDWQTAKIMR 79

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR 157
           +    + +  ++ + +TVEE  N+A      +      R   V  LF R      QR
Sbjct: 80  EAVAIVPEGRRVFSRMTVEE--NLAMGGFFAERDQFQERIKWVYELFPRLHERRIQR 134

Length = 237

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           R  +K  L  VS  L  G +  ++GP+GAGK+TL+ IL  
Sbjct: 9   RYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
           R  ++T + ++S  +    +  ++GP+GAGKSTLL ++TG  ILR 
Sbjct: 9   RFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRP 52

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            E   L +VS  +R+GE  AI+G  G+GKSTLL +L G
Sbjct: 15  QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L    +  R    T L  +S  +  GE+  ++GP+GAGK+T + ++ G
Sbjct: 1   LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + IL+ +S R+  G +TA++G +GAGKSTLL  L G
Sbjct: 14  RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49

Length = 272

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTG 77
            G+ + ++G SG GKSTLLN L  
Sbjct: 84  KGKTSVLVGQSGVGKSTLLNALLP 107

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           NE+ +   +   + +GE   + G +GAGK+TLL +L G     + G I I+G        
Sbjct: 22  NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES-GQIQIDGKTATRGDR 80

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATAL 128
            +   Y+     L A+L+  E ++    L
Sbjct: 81  SRFMAYLGHLPGLKADLSTLENLHFLCGL 109

Length = 214

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 58 TAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
          TAI G SGAGK++L+N ++G  T   +G I +NG 
Sbjct: 27 TAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGR 60

Length = 352

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HE 93
           P EK  L +V+  +  GE   ++G +G+GKSTL+  L G     T G I I+G      +
Sbjct: 17  PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-LKPTSGKIIIDGVDITDKK 75

Query: 94  RNLSQFRK 101
             LS  RK
Sbjct: 76  VKLSDIRK 83

Length = 287

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 5   EYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPS 64
           E++N       NN N     N+ + +    +N       IL  +S  ++    T I+G S
Sbjct: 457 EFINKKKRTELNNLNGDIVINDVSYSYGYGSN-------ILSDISLTIKMNSKTTIVGMS 509

Query: 65  GAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF-----RKLSCYIMQD 109
           G+GKSTL  +L G+  + + G I +NG   +L        R+   Y+ Q+
Sbjct: 510 GSGKSTLAKLLVGFFQARS-GEILLNGF--SLKDIDRHTLRQFINYLPQE 556

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +LK +   L +GE+ A++G +GAGKSTL+ I+ G
Sbjct: 26  VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59

Length = 510

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++ VS R+R GE+  ++GP+GAGK+T + +LT 
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 9/51 (17%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWLLE 230
           + H +T+L  +   ++ GE+ AI+GPSG+GK+TL         LR + LLE
Sbjct: 12  KFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTL---------LRCINLLE 53

Length = 250

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 20/123 (16%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E  +LK VS +  +G++ +I+G SG+GKST L  +  +    +EGSI +NG   NL + +
Sbjct: 17  EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEKPSEGSIVVNGQTINLVRDK 75

Query: 101 KLSCYIMQDNQL------------HANL----TVEEAMNVATALKLGKDLTKA-ARKDVV 143
                +   NQL            H NL    TV E +  A    LG  L+K  AR+  V
Sbjct: 76  DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERAV 133

Query: 144 RTL 146
           + L
Sbjct: 134 KYL 136

Length = 257

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERNLSQ 98
           +   S  +  GE+  IMG SG+GKSTL+ +L       T G I ++G          L +
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-IEPTRGEILVDGKDIAKLSAAELRE 102

Query: 99  FR--KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
            R  K+S  + Q   L  + TV E  NVA  L++ + + KA R++   
Sbjct: 103 LRRKKIS-MVFQSFALLPHRTVLE--NVAFGLEV-QGVPKAEREERAL 146

Length = 386

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 54 SGELTAIMGPSGAGKSTLLNILTG 77
           G+ + + G SG GKSTLLN L  
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57

Length = 161

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
            G+ + + G SG GKSTLLN L  
Sbjct: 34  KGKTSVLAGQSGVGKSTLLNALLP 57

Length = 161

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
            +   L++V+  L+ G++  I GP+G+GKSTLL+++  +    +EG I    H+  L++ 
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRF--HDIPLTKL 382

Query: 100 R 100
           +
Sbjct: 383 Q 383

Length = 569

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +T+L +VS  L+SGE  A++G SG GKSTL  +L G
Sbjct: 25  QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG 60

Length = 268

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
            K IL  +S  L +G++TA++GP+G GKSTLL   
Sbjct: 14  TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCF 48

Length = 255

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 35  NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--- 91
           +N E  EK  L  V+  ++ GE   I+G +G+GKST+   +       +EG + ++G   
Sbjct: 16  SNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDT 74

Query: 92  -HERNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
             E NL   R  +  + Q  DNQ+ A + VEE
Sbjct: 75  SDEENLWDIRNKAGMVFQNPDNQIVATI-VEE 105

Length = 280

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +Y  I++K ILK ++ ++ +  +  IMGPSG+GKSTLL +L
Sbjct: 16  LYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56

Length = 257

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +  L+ VS  +  GE   + GPSGAGKSTLL ++ G
Sbjct: 15  REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG 50

Length = 223

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              ++ +L++VS  L  GE   ++G +GAGKSTLL IL G
Sbjct: 12  AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG 51

Length = 530

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             R    T L  ++  +  GE   ++GPSG GK+T L ++ G
Sbjct: 7   TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           L  ++  +R GE  A++GPSGAGKSTL  +L
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL 386

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 17/74 (22%)

Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
           VS  L  GE+  I+G SG+GK+TLLN L+  + +   G +                 Y M
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLNALSA-RLAPDAGEVH----------------YRM 67

Query: 108 QDNQLHANLTVEEA 121
           +D QL     + EA
Sbjct: 68  RDGQLRDLYALSEA 81

Length = 258

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +K +LK +S  +  GE  AI+GPSG+GKSTL+ +L   
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378

Length = 567

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
              VS  ++ GE+ A++G +GAGKSTL+ IL G 
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL 53

Length = 501

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
            +  L  VS   + G +   +GP+GAGKST + I+TGY
Sbjct: 14  TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + +   +S  L +GE   + GP+G+GK+TLL IL G
Sbjct: 12  GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
          E+T+L  +   + +G+  A++G SG GKSTLL +L G
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60

Length = 257

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +LK+VS  + +GE  A+ GPSGAGKSTLL  L
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSL 54

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 60  IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDNQLHANLTV 118
           ++GPSG GK+TLL +L G++     GSI ++G +  N+    +    + Q   L  ++TV
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQP-DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59

Query: 119 EEAMNVATALKLGKDLTKAARKDVVR 144
           EE  NVA  LK+ K + +A  K  V 
Sbjct: 60  EE--NVAFGLKMRK-VPRAEIKPRVL 82

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 38   EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--ERN 95
            EP+ +  +  ++      ++TA +G +GAGK+T L+ILTG     T G++ + G   E N
Sbjct: 939  EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLVGGKDIETN 997

Query: 96   LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALK 129
            L   R+      Q N L  +LTV E +     LK
Sbjct: 998  LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           T L  VS  +  GE+  I+G SGAGKSTLL ++  
Sbjct: 20  TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL 54

Length = 339

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 15/33 (45%), Positives = 25/33 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  +S  +  GEL  ++GP+GAGK+TL++++TG
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG 53

Length = 249

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +  IL+ VS  +  GE+T ++G +G GK+TLL  L G
Sbjct: 11  GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           IL ++S  +R+GE  AI GPSG GKSTLL I+
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIV 49

Length = 223

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           P EK  L ++S  L  G   A++G +G+GKSTL+          + G+ITI G+      
Sbjct: 17  PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-SSGTITIAGYHITPET 75

Query: 94  --RNLSQFRKLSCYIMQ--DNQLHANLTVEEAM 122
             +NL + RK    + Q  + QL  N  +++  
Sbjct: 76  GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108

Length = 287

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
           + E+T I G SGAGKSTLL  + G
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAG 45

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.7 bits (99), Expect = 9e-05
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTG 219
            L +GEL  I GP+GAGK++LL IL G
Sbjct: 23  TLNAGELVQIEGPNGAGKTSLLRILAG 49

Length = 204

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +  VS  ++ GE+T ++GP+GAGK+T L +L G
Sbjct: 21  VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           N + E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G
Sbjct: 7   NDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 47

Length = 248

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 23/124 (18%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKS----TLLNILTGYKTSGTEGSITINGH---- 92
               +K +S  + +GE  A++G SG+GKS    ++L +L     +   GSI  +G     
Sbjct: 22  TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81

Query: 93  --ERNLSQFR--KLSCYIMQD-----NQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
             ER L   R  K+   I Q+     N LH   T+ +   +A  L+L + L++AA +   
Sbjct: 82  ASERQLRGVRGNKIG-MIFQEPMTSLNPLH---TIGK--QLAEVLRLHRGLSRAAARARA 135

Query: 144 RTLF 147
             L 
Sbjct: 136 LELL 139

Length = 534

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 17/105 (16%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---------- 92
           T+L  ++  + +GE  A++GPSG+GKST+L IL   +    EG I + G           
Sbjct: 14  TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNG 72

Query: 93  ------ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLG 131
                 E++L Q R     + Q   L  + TV + +  A  L LG
Sbjct: 73  PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKTSGTEGSITINGHE 93
          +K  L  +S R+    +TA +GPSG GKSTLL       +++   +    EG I ++G  
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR---IEGEIRLDGQN 93

Length = 272

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
            N +  ++ VS   + G+  AI+GP+GAGKSTL+N+L         G I I+G
Sbjct: 345 DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-QSGRILIDG 396

Length = 588

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
            N    +  VS   ++G+  AI+GP+GAGK+TL+N+L       T G I I+G
Sbjct: 345 ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDG 396

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           ILK +S  +  G+  A++G SG GKST++++L
Sbjct: 18  ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL 49

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           K ++ ++   + +GE   ++GPSG GK+T+L ++ G+
Sbjct: 27  KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63

Length = 375

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           S L+A  +     ++ ++  VS  + SGE+  ++GP+GAGK+T   ++ G
Sbjct: 3   STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG 52

Length = 243

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           EK  L  +S  +  G+   ++G +GAGKSTLLN + G 
Sbjct: 18  EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD 55

Length = 263

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E+ + + +S  L +GE   + GP+G GK+TLL IL G
Sbjct: 12  ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + T+L  V   +R G L  ++GP+GAGK+TLL  + G
Sbjct: 15  DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51

Length = 402

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +L +VS  +  GE+ AI+G SG+GKSTLL++L G
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57

Length = 233

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +      + I  ++S  +  G++TAIMGPSG GK+TLL ++ G
Sbjct: 13  VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG 55

Length = 269

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           R+    +L +V+  +  GE+  +MGPSG GKSTLL+ + G 
Sbjct: 11  RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA 51

Length = 213

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 75
          N+K ILK ++ ++ +  +  IMGPSG+GKSTLL +L
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56

Length = 257

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           VS  L  GE+  I+G SG+GK+TLLN L+ 
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLNALSA 54

Length = 258

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 10/60 (16%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGYKTSGTEGSITINGHE 93
          EK  +K+V+ ++   ++TAI+GPSG GK+TLL       + + G++    EG I   G +
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---VEGKIYFKGQD 71

Length = 250

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG----YKTSGTEGSITINGH 92
          LK+++  +   ++TA +GPSG GKSTLL         Y     EG I ++G 
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGE 80

Length = 260

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH 113
            GE+  I+GP G+GK+TL   L         G I I+G E  L +       I+   +  
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-EDILEEVLDQLLLIIVGGKKA 59

Query: 114 ANLTVEEAMNV-ATALKLGKDL 134
           +           A A KL  D+
Sbjct: 60  SGSGELRLRLALALARKLKPDV 81

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIMQD 109
           G + A++G +GAGKST++ +LTG  T    GSI   G E        SQ   +   I Q+
Sbjct: 30  GRVMALVGENGAGKSTMMKVLTGIYTRDA-GSILYLGKEVTFNGPKSSQEAGIGI-IHQE 87

Query: 110 NQLHANLTVEE 120
             L   LT+ E
Sbjct: 88  LNLIPQLTIAE 98

Length = 501

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 21/116 (18%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKST----LLNILTGYKTSGTEGSITING---HE 93
              ++K++S  LR GE   ++G SG+GKST    LL ++       ++G I  +G   H 
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIWFDGQPLHN 351

Query: 94  RNLSQ---FRKLSCYIMQD--NQLHANLTVEEAMNVATALKL-GKDLTKAARKDVV 143
            N  Q    R     + QD  + L+  L V +   +   L++    L+ A R+  V
Sbjct: 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI--IEEGLRVHQPTLSAAQREQQV 405

Length = 529

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +   + T LK VS  +  GE+  I+G SGAGKSTL+  + G
Sbjct: 13  DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING 53

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           LKSV+  +  GE+ A++G +GAGKSTL+ +L+G
Sbjct: 21  LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG 53

Length = 510

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 13/52 (25%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-------------GYKILRQ 225
           +  V+ ++R GE+   +GP+GAGK+T + +LT             GY ++R+
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           LK V+  ++ GE  +++G SG GKSTLLN+++G 
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL 34

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
            +L ++   +  GE+  I+GPSG+GKSTLL
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLL 44

Length = 240

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ 225
            +   L++V+  L+ G++  I GP+G+GKSTLL++     I R 
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSL-----IQRH 364

Length = 569

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           +K  L  +S R+    +TA +GPSG GKSTLL
Sbjct: 37  DKQALFDISMRIPKNRVTAFIGPSGCGKSTLL 68

Length = 272

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           Y + H    LK+++  +   ++TA +GPSG GKSTLL   
Sbjct: 23  YGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59

Length = 260

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
          L  VS  L  G+  A++G SG GKSTL  +LT  +T  T G +   G +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQD 78

Length = 327

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 12/106 (11%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
           E   L++++ ++ +G+  A++G SG+GKST+ N+LT  Y     EG I ++GH   +  L
Sbjct: 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDLRDYTL 412

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALK---LGKDLTKAAR 139
           +  R     + Q+  L  N T+  A N+A A       + + +AAR
Sbjct: 413 ASLRNQVALVSQNVHLF-NDTI--ANNIAYARTEQYSREQIEEAAR 455

Length = 582

>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query: 8   NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKT 43
           NTN   NTNNTN +  + NTNTNTN+N N   N   
Sbjct: 318 NTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNA 353

Length = 481

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
           P +K ILK +S     G    ++G +GAGKSTLL I+ G             G E   + 
Sbjct: 17  PPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-------FEG-EARPAP 68

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 134
             K+  Y+ Q+ QL    TV E  NV   +   K  
Sbjct: 69  GIKVG-YLPQEPQLDPEKTVRE--NVEEGVAEVKAA 101

Length = 556

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ--- 98
             +L +VS  +  GE   ++G SG GKSTL  +L G +    +G+++  G  ++L Q   
Sbjct: 24  APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRG--QDLYQLDR 80

Query: 99  -----FRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGKDLTKAARK 140
                FR+    + QD  + ++  +TV +   +   L+    L ++ +K
Sbjct: 81  KQRRAFRRDVQLVFQDSPSAVNPRMTVRQI--IGEPLRHLTSLDESEQK 127

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING 91
          +  VS  +R GE+  IMG SG+GKSTLL  +    +   T G + I+G
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDG 85

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
           K ++  +S  + SGE   ++GP+GAGKST+  ++ G  TS   G IT+ G
Sbjct: 54  KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-TSPDAGKITVLG 102

Length = 340

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
           +K VS  +R+GE+  I G +G G+S L+  ++G +     G I +NG +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKD 321

Length = 501

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           R +   +LK++S  ++ GE   I+G +G+GKS+LL  L
Sbjct: 13  RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL 50

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + I+  V      G LT ++GP+G+GKSTLL +L G
Sbjct: 14  RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG 49

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSI 87
          K +LK++S  +  GE+  I+G SGAGKS L+++L G      T G I
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           ++ VS  +R+GE+  I G  G G++ L   L G       G IT++G        R 
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRD 71

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS---------QFRKLSC 104
            GE   ++GPSGAGKS+LL +L   +   + G++ I G+  + S           R+   
Sbjct: 27  EGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNVG 85

Query: 105 YIMQDNQLHANLTVEEAMNVA--TALKLGKDLTKAARKDVVRTL 146
            + Q   L  +LTV+E +  A    L L KD   A  + +++ L
Sbjct: 86  MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL 129

Length = 242

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 51  RLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNLSQFRKLSCYI 106
            ++ GEL  ++G +G+GKSTL  +LTG Y+     G I ++G       L  +RKL   +
Sbjct: 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAV 402

Query: 107 MQDNQL 112
             D  L
Sbjct: 403 FSDYHL 408

Length = 546

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT----GYKTSGTEGSITINGHE 93
          EK  L  V   +    +TA +GPSG GKST L  L             G IT++G +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87

Length = 267

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNL 96
                LK VS  +  GE  AI+G +G+GKSTL  +L G       G+IT+ G    E  +
Sbjct: 18  AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-LLPEAGTITVGGMVLSEETV 76

Query: 97  SQFRKLSCYIMQ--DNQLHANLTVEEAMNVATAL 128
              R+    + Q  DNQ     TV++  +VA  L
Sbjct: 77  WDVRRQVGMVFQNPDNQF-VGATVQD--DVAFGL 107

Length = 279

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           R   K  +  V+  +  GE   ++GPSG+GK+T L
Sbjct: 10  RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL 44

Length = 309

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           LK+VS  +  G+   I+GP+G+GKS LL  + G+
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 14/32 (43%), Positives = 25/32 (78%)

Query: 189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +V+  +R  E+ +++GP+GAGK+T+ N LTG+
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54

Length = 255

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +      +  VS  ++ GE   ++G SG GKSTL  ++ G
Sbjct: 22  KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61

Length = 268

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 16/33 (48%), Positives = 26/33 (78%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           +LK +S ++++GE  A++G +G GKSTLL +LT
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387

Length = 574

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++   L +V   +  GE+ A++GPSG+GKSTLL  L+G
Sbjct: 15  NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52

Length = 262

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL-------TGYKILRQLWLLEYSHKD 235
           +  +LK ++  L  GE+ A++GPSG+GKST+  +L        G  +L  + L++Y H  
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552

Query: 236 L 236
           L
Sbjct: 553 L 553

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
           K +LK++S  +  GE+  I+G SGAGKS L+++L G  
Sbjct: 13  KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHERNL 96
          VS  L  GE+  I+G SG+GK+TLL  ++G     +GT      +G  R+L
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDL 75

Length = 258

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)

Query: 51  RLRSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITINGH 92
            LR G    I+G    GKS+LLN L G   +      GT     E  I +NG 
Sbjct: 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI 265

Length = 454

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 52  LRSGELTAIMGPSGAGKSTLLNILTG 77
           L  G+  A++G SG GKSTL+N L G
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLG 217

Length = 356

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
           L  G+  A++G SG GKSTL+N L G
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLG 217

Length = 356

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 35/49 (71%)

Query: 171 VLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +L +  +  R+ E+ +L++++  ++ G++ A++G SGAGK+TLL ++ G
Sbjct: 383 ILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431

Length = 593

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 17/74 (22%)

Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM 107
           VS  L  GE+  I+G SG+GKSTLL  L G       G+ T                YIM
Sbjct: 22  VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTAT----------------YIM 64

Query: 108 QDNQLHANLTVEEA 121
           +         + EA
Sbjct: 65  RSGAELELYQLSEA 78

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 11/53 (20%)

Query: 51  RLRSGELTAIMGPSGAGKSTLLNILTGYK----TS--GT-----EGSITINGH 92
            LR G    I G    GKS+LLN L G +    T   GT     E  I ++G 
Sbjct: 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI 263

Length = 449

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQF 99
            +L+++S  +  G+   ++G +G+GKSTLL+     +   TEG I I+G   N   L ++
Sbjct: 18  AVLENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGDIQIDGVSWNSVPLQKW 75

Query: 100 RK 101
           RK
Sbjct: 76  RK 77

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 54 SGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITINGHERNLSQ 98
           GE   ++GPSGAGKS+L   LN+L   ++    G++ I G+  + S+
Sbjct: 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRS----GTLNIAGNHFDFSK 70

Length = 242

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLS 97
          L +V+ ++R   + A+MG +GAGKSTLL  L G Y+     GSI   G E +  
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFK 65

Length = 491

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITI 89
          +L++VS  + +GE   + GPSG+GKSTLL  L   Y     EG I +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILV 70

Length = 235

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
          +E +IL  V   ++ GE  A++G SG+GKSTLL IL G    G+ G +++ G    L Q
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQ--PLHQ 76

Length = 228

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL----NIL--TGYKILRQLWLLEYSHKDLALCR 240
           LK ++ +   GE+ A++GP+GAGKSTL      IL  T  ++L +   ++Y  K L   R
Sbjct: 18  LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77

Length = 275

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           EK  +K+V+ ++   ++TAI+GPSG GK+TLL
Sbjct: 15  EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL 46

Length = 250

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ERNL 96
           +      +  GE+  IMG SG+GKST + +L       T G I I+G         E   
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGENIMKQSPVELRE 67

Query: 97  SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            + +K+   + Q   L  ++T+ +  N +   +L     +  RK+    L
Sbjct: 68  VRRKKIG-MVFQQFALFPHMTILQ--NTSLGPELLG-WPEQERKEKALEL 113

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 9/66 (13%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITINGHE-----RN 95
           LK VS  +    +TA++GPSG GKST L  L       K +  +GS+ ++G +      N
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 96  LSQFRK 101
           L + RK
Sbjct: 121 LVELRK 126

Length = 305

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 52  LRSGELTAIMGPSGAGKSTLLNILTG 77
            + G++T I+GP+G GK+T + IL+G
Sbjct: 96  PKEGKVTGILGPNGIGKTTAVKILSG 121

Length = 590

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
            + G++T I+GP+G GK+T + IL+G
Sbjct: 96  PKEGKVTGILGPNGIGKTTAVKILSG 121

Length = 590

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
           LK+++  +  G  T I G SG+GKSTL+N
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLIN 652

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
           LK+++  +  G  T I G SG+GKSTL+N
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLIN 652

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++K +   +  GE   ++GPSG GKSTLL ++ G
Sbjct: 19  VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52

Length = 356

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           HE  +LK VS +  +G++ +I+G SG+GKST L
Sbjct: 19  HE--VLKGVSLQANAGDVISIIGSSGSGKSTFL 49

Length = 256

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           L S+S  +  GE  A++G SG+GKSTL+N++ 
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
           + +LK +S  ++ G+   I GPSG GKS+L   L G      LW
Sbjct: 14  RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG------LW 51

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           VS  L  GE+  I+G SG+GK+TLL  ++G
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLKCISG 54

Length = 258

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           HE +IL  V   ++ GE  A++G SG+GKSTLL IL G
Sbjct: 21  HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58

Length = 228

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI 87
          ++ +L  VS  L+ G++  ++GP+GAGKSTL+ ++ G   +  EG I
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-VAPDEGVI 61

Length = 251

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          +K ++  +S  +  GE   ++GP+GAGKST+  +L G   S   G IT+ G
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-ISPDRGKITVLG 65

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           +L  V+  +    +TA+MGPSG+GKSTLL + 
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF 49

Length = 250

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++ VS     GE+T ++G +GAGK+TLL ++  
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50

Length = 245

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
              + K+++  L +GE  AI+G +G GK+TLL  L G
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367

Length = 530

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              + K+++  L +GE  AI+G +G GK+TLL  L G
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367

Length = 530

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRKLSCYIMQDNQ 111
           G +  ++GPSG GK+T+L ++ G +   TEG I I+G     R++ Q R + C + Q   
Sbjct: 32  GTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQ-RDI-CMVFQSYA 88

Query: 112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           L  ++++ E  NV   LK+   + K  RK  V+
Sbjct: 89  LFPHMSLGE--NVGYGLKMLG-VPKEERKQRVK 118

Length = 351

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 14/37 (37%), Positives = 29/37 (78%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 77
           E+ +L++++  ++ G++ A++G SGAGK+TLL ++ G
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILG 431

Length = 593

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           TILK  SG ++   +T ++GP  +GK+TLL  L G
Sbjct: 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAG 213

Length = 1470

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  ++  + +GE   ++GPSGAGKSTLL ++  
Sbjct: 17  LDGINISISAGEFVFLVGPSGAGKSTLLKLIYK 49

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYK 221
           VS  +  GE+ A++G SG GKSTLL +L G++
Sbjct: 38  VSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69

Length = 377

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 42   KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQ 98
            + +L+ +S  +  G+   ++G +G+GKSTLL+ L   +   TEG I I+G   N   L  
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL--LRLLSTEGEIQIDGVSWNSVTLQT 1289

Query: 99   FRK 101
            +RK
Sbjct: 1290 WRK 1292

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           K ILK +S +   G +  I+GPSGAGKSTL+ ++
Sbjct: 16  KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI 49

Length = 241

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI 89
            +K ++  +S +L  G +  ++GP+GAGKSTL  ++TG +   + G+I I
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS-GTIKI 381

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           YN+   K  L SVS      E+TA++GPSG+GKSTLL
Sbjct: 15  YNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLL 48

Length = 252

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           R    T+L  ++  + +GE  A++GPSG+GKST+L IL
Sbjct: 9   RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRIL 46

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           ++ VS   + G+  AI+GP+GAGKSTL+N+L
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381

Length = 588

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             +L +VS  +  GE   ++G SG GKSTL  +L G
Sbjct: 24  APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          +K ++  +S  ++ GE   ++GP+GAGK+T L +L G  T    GSI++ G
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCG 68

Length = 306

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITING-----HERN 95
           LK ++  +   ++TA++GPSG GKST L  L        +   EG + ++G      + +
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78

Query: 96  LSQFRK 101
           ++Q RK
Sbjct: 79  VNQLRK 84

Length = 250

>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
           LK+V   +  G+ T + G SG+GKSTL+N  L  YK L +
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTLINETL--YKALAR 662

Length = 943

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 11/51 (21%)

Query: 53 RSGELTAIMGPSGAGKSTLLNILTGYKTS------GT-----EGSITINGH 92
          R G    I G    GKS+LLN L G   +      GT     E  I + G 
Sbjct: 1  REGIKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGGI 51

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----ERNLSQF 99
           LK ++  ++ GE+TAI+G +GAGKSTL   L G     + G I  +G       + L + 
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-LKPSSGRILFDGKPIDYSRKGLMKL 80

Query: 100 RKLSCYIMQ--DNQLHANLTVEEAMNVATALKLGKD 133
           R+    + Q  DNQL +    ++    A  LKL +D
Sbjct: 81  RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED 116

Length = 283

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 6/56 (10%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHKDL 236
           LK ++  ++ GE+TAI+G +GAGKSTL   L G       +IL     ++YS K L
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGL 77

Length = 283

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTG 77
           +G++T ++G SG GKSTL+N L  
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186

Length = 301

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
           +G++T ++G SG GKSTL+N L  
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186

Length = 301

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 34  NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH- 92
             + + +++ +L+ +S  L +G L  + G +GAGK+TLL ++ G      +G I      
Sbjct: 6   ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQS 64

Query: 93  -ERNLSQFRKLSCYIMQDNQLHANLTVEE 120
            +++L  ++K  C++   + ++  LT+ E
Sbjct: 65  IKKDLCTYQKQLCFVGHRSGINPYLTLRE 93

Length = 200

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 45  LKSVSG---RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQ-- 98
           LK+V G   RL  GE   ++G SG GKST    + G   + T+G +   G +   +    
Sbjct: 34  LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMKDDE 92

Query: 99  ---FRKLSCYIMQD--NQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTL 146
               R     I QD    L+  +T+ E   +A  L+     L++   KD V+ +
Sbjct: 93  WRAVRSDIQMIFQDPLASLNPRMTIGEI--IAEPLRTYHPKLSRQEVKDRVKAM 144

Length = 331

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
          + T+ ++++  +  G  TAI+GP+G GKSTLL  L+   T    G + ++G  
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEH 70

Length = 265

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
              GEL  ++GP+GAGK+TLL  + G      +G++ + G
Sbjct: 2  SADKGELLGLLGPNGAGKTTLLRAILGL-IPPAKGTVKVAG 41

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITING---HER 94
            +    +  ++  ++ GEL  ++G +G+GKSTL  +LTG Y+     G I ++G      
Sbjct: 333 QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVTAE 390

Query: 95  NLSQFRKL 102
               +RKL
Sbjct: 391 QPEDYRKL 398

Length = 547

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE----- 93
           P E   L  V+  +  G  TA +G +G+GKST++ +L G     T+GS+ ++        
Sbjct: 17  PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTS 75

Query: 94  --RNLSQFRK 101
             +++ Q RK
Sbjct: 76  KNKDIKQIRK 85

Length = 280

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 11/21 (52%), Positives = 19/21 (90%)

Query: 199 LTAIMGPSGAGKSTLLNILTG 219
           +TA+ GPSG+GK++L+N++ G
Sbjct: 26  ITALFGPSGSGKTSLINMIAG 46

Length = 352

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
              IL ++S R++ GE+  I+G SG+GKSTL  ++  +
Sbjct: 14  GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +S  +  GE+   +G +GAGKST L +LTG
Sbjct: 41  QDISFEIPKGEIVGFLGANGAGKSTTLKMLTG 72

Length = 325

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 146 LFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGP 205
           LF +   N+  R   +G  G F S+  L        +   +LK++S +L  G+L A+ G 
Sbjct: 409 LFEKIKQNNKARKQPNGDDGLFFSNFSL--------YVTPVLKNISFKLEKGQLLAVAGS 460

Query: 206 SGAGKSTLLNILTG 219
           +G+GKS+LL ++ G
Sbjct: 461 TGSGKSSLLMMIMG 474

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E+  L  V+  + SG   AI+G +G+GKSTLL  L G
Sbjct: 19  ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG 55

Length = 290

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLW 227
           +T+L  ++  +R GE   I G SGAGK++LL  L G      LW
Sbjct: 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG------LW 443

Length = 604

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           VS   ++G+  AI+GP+GAGK+TL+N+L
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL 381

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTGY 220
            GE+  I+GP G+GK+TL   L   
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARE 25

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKI 222
           +L++VS  + +GE   + GPSG+GKSTLL  L   Y  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63

Length = 235

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++ +L  VS  L+ G++  ++GP+GAGKSTL+ ++ G
Sbjct: 16  QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52

Length = 251

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           LK ++  +   ++TA++GPSG GKST L  L
Sbjct: 19  LKKINLDIEENQVTALIGPSGCGKSTFLRTL 49

Length = 250

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITING 91
          P+   +LK+VS ++++GE   I+G +GAGKSTL  IL  ++     EG I I+G
Sbjct: 18 PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG 69

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQ 98
           +T+L  +S    +G++T ++G +G+GKSTLL +L G     +EG I ++       +   
Sbjct: 24  RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLESWSSKA 82

Query: 99  FRKLSCYIMQDNQLHA--NLTVEE 120
           F +   Y+ Q  QL A   +TV E
Sbjct: 83  FARKVAYLPQ--QLPAAEGMTVRE 104

Length = 265

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 53  RSGELTAIMGPSGAGKSTLLNILTG 77
           R G++  I+GP+G GKST L IL G
Sbjct: 98  RPGKVVGILGPNGIGKSTALKILAG 122

Length = 591

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 195 RSGELTAIMGPSGAGKSTLLNILTG 219
           R G++  I+GP+G GKST L IL G
Sbjct: 98  RPGKVVGILGPNGIGKSTALKILAG 122

Length = 591

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLSQFRKLSCYIMQ--DNQLH 113
           A++GP+GAGKSTL     G     T GS+ I G    + N+ + RK    + Q  D+Q+ 
Sbjct: 34  AVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIF 92

Query: 114 ANLTVEE 120
           +  TVE+
Sbjct: 93  SP-TVEQ 98

Length = 277

>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 55  GELTAIMGPSGAGKSTLLNIL 75
           G++T + G SG GKSTLLN L
Sbjct: 164 GKVTVLAGQSGVGKSTLLNAL 184

Length = 298

>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 197 GELTAIMGPSGAGKSTLLNIL 217
           G++T + G SG GKSTLLN L
Sbjct: 164 GKVTVLAGQSGVGKSTLLNAL 184

Length = 298

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 72
           N N    EK  L  ++  +    +TA++GPSG GKSTLL
Sbjct: 10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL 49

Length = 253

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 27 TNTNTNTNN-NCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL-------NILTGY 78
                + N N    EK  L  ++  +   ++TA++GPSG GKST L       ++++  
Sbjct: 1  MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60

Query: 79 KTSGTEGSITING 91
          K    EG + ++G
Sbjct: 61 K---IEGEVLLDG 70

Length = 251

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 21/69 (30%), Positives = 28/69 (40%)

Query: 7  VNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGA 66
          V T       N                N N    E   LK+++  +   E+TAI+GPSG 
Sbjct: 2  VATVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGC 61

Query: 67 GKSTLLNIL 75
          GKST +  L
Sbjct: 62 GKSTYIKTL 70

Length = 271

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KTSGTEGSITI 89
          N N    EK  LK+VS ++    +TA++GPSG GKST +  L       K    EG ++I
Sbjct: 17 NLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76

Query: 90 NGHE 93
           G +
Sbjct: 77 EGED 80

Length = 258

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            K +L  ++  +  GE+  + GPSG+GK+TLL ++ G
Sbjct: 17  RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG 53

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           LK +S  +  G  TA++GP+GAGKSTLL  L G
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53

Length = 274

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
               L    +TAI G SG+GK+TL+ ++ G
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAG 45

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 174 ALAMYNR------IHEKTI----LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           AL + ++      I +KT     +   S  +  GE+  IMG SG+GKSTL+ +L  
Sbjct: 21  ALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR 76

Length = 386

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 179 NRIHEKT----ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             I +KT     +  VS  +R GE+  IMG SG+GKSTLL  +  
Sbjct: 28  EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR 72

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 16/35 (45%), Positives = 19/35 (54%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           EK  L  V   +    +TA +GPSG GKST L  L
Sbjct: 31  EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL 65

Length = 267

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 190 VSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           VS  L  GE+  I+G SG+GKSTLL  L G
Sbjct: 22  VSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           R  +K ++  +S  ++ GE   ++GP+GAGK+T L +L G
Sbjct: 16  RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55

Length = 306

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
           A++G    GKSTL+N LTG K+
Sbjct: 3   ALVGRPNVGKSTLINALTGAKV 24

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N  T L+  S  +  G + A++G +G+GKSTL   L G+      G I+I G     +  
Sbjct: 18  NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-VRLASGKISILGQPTRQALQ 76

Query: 100 RKLSCYIMQDNQL 112
           + L  Y+ Q  ++
Sbjct: 77  KNLVAYVPQSEEV 89

Length = 272

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 15/108 (13%)

Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGH-------ERNLS 97
            S  +  GE+  +MG SG+GKSTLL  + G     + GS+ +   +G           L 
Sbjct: 43  ASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPV-SRGSVLVKDGDGSVDVANCDAATLR 101

Query: 98  QFR-KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           + R      + Q   L    TVEE  NVA  L++ + + KA R+  V 
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEE--NVAFGLEM-QGMPKAERRKRVD 146

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 73
          LK++   +  G LT + G SG+GKS+L+N
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
           LK++   +  G LT + G SG+GKS+L+N
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 16/33 (48%), Positives = 27/33 (81%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L +VS ++R+GE+ ++ G +GAGKSTL+ +L+G
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53

Length = 506

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +K ++  +S +L  G +  ++GP+GAGKSTL  ++TG
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           K ILK +S     G    ++G +GAGKSTLL I+ G
Sbjct: 18  KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           L  + ++ R  E  +LK VS +  +G++ +I+G SG+GKST L
Sbjct: 6   LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL 48

Length = 257

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR 224
              ++K++S  LR GE   ++G SG+GKST     TG  +LR
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLR 334

Length = 529

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           + T+ ++++  +  G  TAI+GP+G GKSTLL  L+
Sbjct: 19  KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54

Length = 265

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           H+  +LK+++      ++TAI+GPSG GKSTLL  L
Sbjct: 15  HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL 50

Length = 251

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 201 AIMGPSGAGKSTLLNIL---TGYKIL 223
            I GP G+GKSTL   L    G  ++
Sbjct: 3   LITGPPGSGKSTLAKKLAEKLGIPVI 28

Length = 114

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 201 AIMGPSGAGKSTLLNILTGYKILR 224
           AI G SG+GKST+   L      R
Sbjct: 3   AITGGSGSGKSTVAKKLAEQLGGR 26

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 59 AIMGPSGAGKSTLLNILT 76
          AI G SG+GKST+   L 
Sbjct: 3  AITGGSGSGKSTVAKKLA 20

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. Length = 69

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           +  I K ++  +  GE    +GPSG GKSTLL ++ G +   T G + I     N     
Sbjct: 15  DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPA 73

Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGK 132
           +     + Q   L+ +L+V E  N++  LKL  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAE--NMSFGLKLAG 104

Length = 369

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          + + IL+ VS  +   ++TAI+GPSG GKST L  L   + +  E  + + G
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN--RMNELESEVRVEG 67

Length = 261

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERN 95
           P E  ++++ S  L+ G+  A++G SG+GKST+  ++ G Y+     G I  +G  R 
Sbjct: 489 PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPRE 544

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 8  NTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTI---------------LKSVSGRL 52
          N   T++ ++      T  T+T   + +    + +T+               L  VS  +
Sbjct: 3  NNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDI 62

Query: 53 RSGELTAIMGPSGAGKSTLL 72
             ++TA++GPSG GKST L
Sbjct: 63 PENQVTAMIGPSGCGKSTFL 82

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.95
COG0488	530	Uup ATPase components of ABC transporters with dup	99.95
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.95
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.95
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.95
PRK11147	635	ABC transporter ATPase component; Reviewed	99.95
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.93
PRK13409	590	putative ATPase RIL; Provisional	99.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
PLN03073	718	ABC transporter F family; Provisional	99.92
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.92
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.91
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.91
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.91
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.91
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.91
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.91
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.91
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.91
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.91
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.91
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.91
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.9
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.9
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.9
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.9
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.9
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.9
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.9
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.9
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.9
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.9
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.9
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.9
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.9
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.9
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.9
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.9
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.9
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.9
PRK10908	222	cell division protein FtsE; Provisional	99.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.89
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.89
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.89
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.89
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.89
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.89
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.89
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.89
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.89
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.89
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.89
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.89
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.89
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.89
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.89
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.89
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.89
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.89
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.88
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.88
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.88
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.88
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.88
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.88
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.88
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.88
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.88
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.88
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.88
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.88
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.88
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.88
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.88
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.87
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.87
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.87
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.87
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.87
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.87
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.87
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.87
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.87
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.87
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.87
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.87
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.86
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.86
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.86
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.86
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.86
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.86
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.86
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.86
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.86
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.86
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
PLN03211	659	ABC transporter G-25; Provisional	99.86
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.86
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.85
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.85
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.85
COG4559	259	ABC-type hemin transport system, ATPase component	99.85
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.85
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.85
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.85
KOG0061|consensus	613		99.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.84
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.84
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.84
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.84
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.84
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.84
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.84
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.84
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.84
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.84
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.84
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.84
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.84
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.84
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.83
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.83
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.83
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.83
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.83
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.83
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.83
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.83
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.83
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.83
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.83
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.83
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.83
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.83
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.82
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.82
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.82
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.82
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.82
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.82
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.82
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.82
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.82
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.82
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.82
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.82
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.82
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.81
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.81
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.81
COG1123	539	ATPase components of various ABC-type transport sy	99.81
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.81
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.81
PLN03140	1470	ABC transporter G family member; Provisional	99.81
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.81
KOG0057|consensus	591		99.8
cd03246	173	ABCC_Protease_Secretion This family represents the	99.8
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.8
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.8
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.8
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.8
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.8
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.8
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.8
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.8
PRK10938	490	putative molybdenum transport ATP-binding protein	99.8
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.79
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.79
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.79
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.79
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.79
KOG0927|consensus	614		99.79
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.79
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.78
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.78
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.78
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.78
KOG0058|consensus	716		99.78
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.78
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.78
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.78
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.78
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.78
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.78
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.78
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.78
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.78
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.77
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.77
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.77
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.77
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.76
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.76
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.76
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.76
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.76
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.75
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.75
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.75
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.75
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.74
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.74
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.74
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.74
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.74
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.74
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.74
KOG0065|consensus	1391		99.74
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.74
COG4988	559	CydD ABC-type transport system involved in cytochr	99.74
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.74
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.73
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.73
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.73
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.73
KOG0055|consensus	1228		99.72
PLN03140	1470	ABC transporter G family member; Provisional	99.72
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.72
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.72
PTZ00243	1560	ABC transporter; Provisional	99.72
PLN03130	1622	ABC transporter C family member; Provisional	99.72
PRK13409	590	putative ATPase RIL; Provisional	99.72
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.72
PLN03232	1495	ABC transporter C family member; Provisional	99.72
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.71
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.7
KOG0059|consensus	885		99.7
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.69
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.69
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.69
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.69
PLN03073	718	ABC transporter F family; Provisional	99.68
COG4172	534	ABC-type uncharacterized transport system, duplica	99.68
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.68
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.67
COG4987	573	CydC ABC-type transport system involved in cytochr	99.67
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.67
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.67
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.67
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.65
KOG0055|consensus	1228		99.65
KOG0056|consensus	790		99.65
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.61
PLN03130	1622	ABC transporter C family member; Provisional	99.59
PLN03232	1495	ABC transporter C family member; Provisional	99.59
PTZ00243	1560	ABC transporter; Provisional	99.58
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.58
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.58
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.56
COG0488	530	Uup ATPase components of ABC transporters with dup	99.54
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.53
KOG0054|consensus	1381		99.52
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.52
KOG0066|consensus	807		99.52
KOG0062|consensus	582		99.52
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.47
KOG0054|consensus	1381		99.47
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.44
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.44
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.43
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.38
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.37
COG4178	604	ABC-type uncharacterized transport system, permeas	99.36
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.35
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.29
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.28
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.27
COG4559	259	ABC-type hemin transport system, ATPase component	99.27
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.26
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.26
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.25
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.25
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.25
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.25
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.24
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.24
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.24
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.24
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.24
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.23
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.23
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.23
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.23
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.23
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.23
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.23
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.23
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.23
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.23
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.22
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.22
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.22
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.22
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.22
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.22
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.22
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.22
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.22
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.22
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.22
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.22
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.21
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.21
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.21
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.21
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.21
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.21
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.21
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.21
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.21
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.2
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.2
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.2
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.2
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.2
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.2
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.2
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.2
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.2
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.2
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.2
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.2
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.2
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.2
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.19
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.19
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.19
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.19
PRK10908	222	cell division protein FtsE; Provisional	99.19
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.19
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.19
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.19
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.19
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.19
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.19
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.19
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.19
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.18
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.18
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.18
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.18
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.18
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.18
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.18
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.18
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.18
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.18
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.18
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.18
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.18
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.18
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.18
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.18
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.18
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.18
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.17
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.17
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.17
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.17
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.17
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.17
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.17
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.16
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.16
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.16
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.16
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.16
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.16
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.16
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.16
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.16
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.16
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.16
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.16
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.15
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.15
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.15
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.15
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.15
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.15
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.15
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.15
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.15
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.14

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-33  Score=261.08  Aligned_cols=94  Identities=32%  Similarity=0.385  Sum_probs=80.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCch----hhhhhceEE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLS----QFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~----~~~~~~g~v  106 (240)
                      -+|+++.++++++|+++||+|++||+++|+|||||||||||++|+|++++ |++|+|.++|.+....    ..++.++|+
T Consensus         8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   87 (506)
T PRK13549          8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII   87 (506)
T ss_pred             EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence            46788899888999999999999999999999999999999999998554 4799999999876321    124569999


Q ss_pred             cccccccccccHHHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVA  125 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~  125 (240)
                      +|++.+++.+++.|++.+.
T Consensus        88 ~q~~~~~~~~tv~e~l~~~  106 (506)
T PRK13549         88 HQELALVKELSVLENIFLG  106 (506)
T ss_pred             EeccccCCCCcHHHHhhhc
Confidence            9999888889999988764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=258.21  Aligned_cols=195  Identities=23%  Similarity=0.257  Sum_probs=137.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      .|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...++.++|++|
T Consensus         2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   80 (491)
T PRK10982          2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-YQKDSGSILFQGKEIDFKSSKEALENGISMVHQ   80 (491)
T ss_pred             CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence            4788888888999999999999999999999999999999999997 56789999999987532    123456899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc---------
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN---------  179 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  179 (240)
                      ++.+++.+|+.+++.+................+.+.++++.+++.+.........|++++|++.+++++..         
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE  160 (491)
T PRK10982         81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE  160 (491)
T ss_pred             ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            99888889999988754211000001122223344555555555433333333344444444433322110         


Q ss_pred             -----------------------------------------------------------------------------c--
Q psy310          180 -----------------------------------------------------------------------------R--  180 (240)
Q Consensus       180 -----------------------------------------------------------------------------~--  180 (240)
                                                                                                   .  
T Consensus       161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (491)
T PRK10982        161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFP  240 (491)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccccc
Confidence                                                                                         0  


Q ss_pred             -----------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 -----------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 -----------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                                       +..+.+|+++||+|++||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus       241 ~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  307 (491)
T PRK10982        241 DKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL  307 (491)
T ss_pred             cccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence                             0011379999999999999999999999999999999999543  56765

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=259.16  Aligned_cols=196  Identities=21%  Similarity=0.207  Sum_probs=142.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~  107 (240)
                      -+|+.+.|+++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   .. .++.++|++
T Consensus         7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   85 (501)
T PRK10762          7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH   85 (501)
T ss_pred             EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence            35788899888999999999999999999999999999999999997 56789999999987532   11 245689999


Q ss_pred             ccccccccccHHHHHHHHHHHhc-CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc------
Q psy310          108 QDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR------  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  180 (240)
                      |++.+++.+++.|++.+...... .........++.+.++++.+++.+.....+...|++++|++.+++++...      
T Consensus        86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  165 (501)
T PRK10762         86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM  165 (501)
T ss_pred             cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99988889999999876421110 01112222234455666666665544444445555655555544332110      


Q ss_pred             -----------------------------------------------------------------------c--------
Q psy310          181 -----------------------------------------------------------------------I--------  181 (240)
Q Consensus       181 -----------------------------------------------------------------------~--------  181 (240)
                                                                                             .        
T Consensus       166 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (501)
T PRK10762        166 DEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQ  245 (501)
T ss_pred             eCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCcccc
Confidence                                                                                   0        


Q ss_pred             -------ccc----------eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          182 -------HEK----------TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       182 -------~~~----------~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                             ...          .+|+++||+|++||+++|+|+||||||||+++|+|+..|  +++++
T Consensus       246 ~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~  311 (501)
T PRK10762        246 YPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL  311 (501)
T ss_pred             ccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence                   001          147999999999999999999999999999999999544  56654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-32  Score=256.78  Aligned_cols=195  Identities=26%  Similarity=0.297  Sum_probs=139.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...++.++|++|
T Consensus         8 ~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q   86 (501)
T PRK11288          8 DGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN-YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQ   86 (501)
T ss_pred             eeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEe
Confidence            5788888888999999999999999999999999999999999997 56789999999977532    123567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc--------
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR--------  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  180 (240)
                      ++.+++.+++.+++.+................+.+..+++.+++.+.....+...|++++|++.+++++...        
T Consensus        87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE  166 (501)
T PRK11288         87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE  166 (501)
T ss_pred             chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            998888899999987642111001112222233455566666554333333344445554444443321100        


Q ss_pred             --------------------------------------------------------------------------------
Q psy310          181 --------------------------------------------------------------------------------  180 (240)
Q Consensus       181 --------------------------------------------------------------------------------  180 (240)
                                                                                                      
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (501)
T PRK11288        167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIY  246 (501)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCccccc
Confidence                                                                                            


Q ss_pred             -----c-----------ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 -----I-----------HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 -----~-----------~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                           .           ..+.+|+++||+|++||+++|+|+||||||||+|+|+|+..  -+++|+
T Consensus       247 ~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~  312 (501)
T PRK11288        247 GYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL  312 (501)
T ss_pred             cccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence                 0           00126899999999999999999999999999999999853  356655

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.5e-32  Score=256.12  Aligned_cols=93  Identities=28%  Similarity=0.312  Sum_probs=79.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCch----hhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLS----QFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~----~~~~~~g~v~  107 (240)
                      +|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|++++ +++|+|.++|.++...    ..+..++|++
T Consensus         5 ~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   84 (500)
T TIGR02633         5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIH   84 (500)
T ss_pred             EeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            5788888888999999999999999999999999999999999998543 3799999999865321    1235689999


Q ss_pred             ccccccccccHHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVA  125 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~  125 (240)
                      |++.+++.+++.+++.+.
T Consensus        85 q~~~~~~~~tv~~~l~~~  102 (500)
T TIGR02633        85 QELTLVPELSVAENIFLG  102 (500)
T ss_pred             eccccCCCCcHHHHHHhh
Confidence            999888889999988754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-32  Score=256.23  Aligned_cols=196  Identities=23%  Similarity=0.261  Sum_probs=139.0

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~  107 (240)
                      -+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+....    ..++.++|++
T Consensus         8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~   86 (510)
T PRK09700          8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-HEPTKGTITINNINYNKLDHKLAAQLGIGIIY   86 (510)
T ss_pred             EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-cCCCccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence            36788899888999999999999999999999999999999999997 567899999999875321    1234689999


Q ss_pred             ccccccccccHHHHHHHHHHHh--c-CC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc---
Q psy310          108 QDNQLHANLTVEEAMNVATALK--L-GK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR---  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~--~-~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  180 (240)
                      |++.+++.+++.+++.+.....  . .. ........+.+.++++.+++.+.........|++++|++.+++++...   
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l  166 (510)
T PRK09700         87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV  166 (510)
T ss_pred             ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9998888899999887532100  0 00 011222233455566655654443333444444444444333221100   


Q ss_pred             --------------------------------------------------------------------------------
Q psy310          181 --------------------------------------------------------------------------------  180 (240)
Q Consensus       181 --------------------------------------------------------------------------------  180 (240)
                                                                                                      
T Consensus       167 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~  246 (510)
T PRK09700        167 IIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGREL  246 (510)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCc
Confidence                                                                                            


Q ss_pred             --------------------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 --------------------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 --------------------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                                                .....+|+++||+|++||+++|+|+||||||||+|+|+|+..  .+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~  322 (510)
T PRK09700        247 QNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL  322 (510)
T ss_pred             cccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence                                      001137899999999999999999999999999999999954  356765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=3.6e-31  Score=250.38  Aligned_cols=193  Identities=26%  Similarity=0.289  Sum_probs=135.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECC--------------------
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITING--------------------   91 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g--------------------   91 (240)
                      +|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+++ +|++|+|.+++                    
T Consensus         4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~   83 (520)
T TIGR03269         4 KNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCP   83 (520)
T ss_pred             EEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccc
Confidence            578888888899999999999999999999999999999999999742 57899999862                    


Q ss_pred             ---ccC--------C-----chhhhhhceEEccc-ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch
Q psy310           92 ---HER--------N-----LSQFRKLSCYIMQD-NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH  154 (240)
Q Consensus        92 ---~~~--------~-----~~~~~~~~g~v~Q~-~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~  154 (240)
                         .++        .     ....++.++|++|+ +.+++.+++.+++.+.....   ........+.+.++++.+++.+
T Consensus        84 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~  160 (520)
T TIGR03269        84 VCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSH  160 (520)
T ss_pred             cccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChh
Confidence               111        0     01234568999997 56777889999987643221   1122223344555666666554


Q ss_pred             hhhhccCCCCCchhhHHHHHHHHhc-------------------------------------------------------
Q psy310          155 AQRCFLSGPWGTFESSVLLALAMYN-------------------------------------------------------  179 (240)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  179 (240)
                      .....+...|++++|++.+++++..                                                       
T Consensus       161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~  240 (520)
T TIGR03269       161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI  240 (520)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence            4444444444444444433221100                                                       


Q ss_pred             -----------------------------------------------ccc-----cceeeccceeEEeCCcEEEEEcCCC
Q psy310          180 -----------------------------------------------RIH-----EKTILKSVSGRLRSGELTAIMGPSG  207 (240)
Q Consensus       180 -----------------------------------------------~~~-----~~~il~~vsl~I~~Ge~valvG~NG  207 (240)
                                                                     .+.     .+.+|+++||+|++||+++|+|+||
T Consensus       241 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NG  320 (520)
T TIGR03269       241 WLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSG  320 (520)
T ss_pred             EEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCC
Confidence                                                           111     1358999999999999999999999


Q ss_pred             CCHHHHHHHHhCCcc--cchhhh
Q psy310          208 AGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       208 sGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ||||||+++|+|+..  .+++++
T Consensus       321 sGKSTLl~~l~Gl~~p~~G~i~~  343 (520)
T TIGR03269       321 AGKTTLSKIIAGVLEPTSGEVNV  343 (520)
T ss_pred             CCHHHHHHHHhCCCCCCCeEEEE
Confidence            999999999999943  456643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=3.2e-31  Score=250.28  Aligned_cols=93  Identities=27%  Similarity=0.399  Sum_probs=80.1

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhh-hhhceEE
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQF-RKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~-~~~~g~v  106 (240)
                      .-+|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   ... +..++|+
T Consensus        13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v   91 (510)
T PRK15439         13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-VPPDSGTLEIGGNPCARLTPAKAHQLGIYLV   91 (510)
T ss_pred             EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence            357889999999999999999999999999999999999999999997 56789999999976532   111 2458999


Q ss_pred             cccccccccccHHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNV  124 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~  124 (240)
                      +|++.+++.+++.|++.+
T Consensus        92 ~q~~~~~~~~tv~e~l~~  109 (510)
T PRK15439         92 PQEPLLFPNLSVKENILF  109 (510)
T ss_pred             eccCccCCCCcHHHHhhc
Confidence            999998899999998765

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=3.1e-30  Score=244.52  Aligned_cols=93  Identities=25%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc---h---
Q psy310           32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL---S---   97 (240)
Q Consensus        32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~---~---   97 (240)
                      -.|+.+.|+.    +++|+++||+|++||+++|+|||||||||||++|+|++++    +++|+|.++|.++..   .   
T Consensus         8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   87 (529)
T PRK15134          8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR   87 (529)
T ss_pred             EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence            4567777753    5899999999999999999999999999999999998553    269999999987532   1   


Q ss_pred             hhh-hhceEEccccc--ccccccHHHHHHH
Q psy310           98 QFR-KLSCYIMQDNQ--LHANLTVEEAMNV  124 (240)
Q Consensus        98 ~~~-~~~g~v~Q~~~--~~~~ltv~e~l~~  124 (240)
                      ..+ +.++|++|++.  +.+.+++.+++.+
T Consensus        88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~  117 (529)
T PRK15134         88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYE  117 (529)
T ss_pred             HHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence            112 46899999974  4556788887654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=1.2e-30  Score=245.10  Aligned_cols=79  Identities=24%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      -+|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++|
T Consensus         6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   84 (490)
T PRK10938          6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE-LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQ   84 (490)
T ss_pred             EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCceEEECCcccccCCHHHHHHHhceecc
Confidence            35788899888899999999999999999999999999999999997 5678999999886542   1233456899999


Q ss_pred             ccc
Q psy310          109 DNQ  111 (240)
Q Consensus       109 ~~~  111 (240)
                      ++.
T Consensus        85 ~~~   87 (490)
T PRK10938         85 RNN   87 (490)
T ss_pred             Ccc
Confidence            864

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=7.1e-30  Score=237.78  Aligned_cols=184  Identities=28%  Similarity=0.369  Sum_probs=144.3

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC---CccEEEECCccCCc---h----hhhhhceEEccccc-
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG---TEGSITINGHERNL---S----QFRKLSCYIMQDNQ-  111 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~---~~G~V~v~g~~~~~---~----~~~~~~g~v~Q~~~-  111 (240)
                      .++++|||+|.+||++||||+|||||||++++|.|+++.+   .+|+|.++|.+...   .    ...+.++|+||+|. 
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            6999999999999999999999999999999999985544   38999999985421   1    12367899999975 


Q ss_pred             -ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh--ccCCCCCchhhHHHHHHHHhcc--------
Q psy310          112 -LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC--FLSGPWGTFESSVLLALAMYNR--------  180 (240)
Q Consensus       112 -~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------  180 (240)
                       +.+.+++.+.+.-....+.  .....+.++.+.++++.+++++....  ++...|++++|++++++++...        
T Consensus       103 slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE  180 (539)
T COG1123         103 SLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE  180 (539)
T ss_pred             hcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence             4455777776665444432  22356667788889999999887665  8888999999998887653210        


Q ss_pred             --------------------------------------------------------------------------------
Q psy310          181 --------------------------------------------------------------------------------  180 (240)
Q Consensus       181 --------------------------------------------------------------------------------  180 (240)
                                                                                                      
T Consensus       181 PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~  260 (539)
T COG1123         181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPR  260 (539)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCC
Confidence                                                                                            


Q ss_pred             -----------------------------cc-----------cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          181 -----------------------------IH-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       181 -----------------------------~~-----------~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                                                   |.           ...++++|||.|++||++||||++|||||||.|+|+|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL  340 (539)
T COG1123         261 LGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL  340 (539)
T ss_pred             cccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence                                         00           12579999999999999999999999999999999999


Q ss_pred             cccc--hhhh
Q psy310          221 KILR--QLWL  228 (240)
Q Consensus       221 ~~~~--~~~~  228 (240)
                      ..|+  .++|
T Consensus       341 ~~P~~G~i~~  350 (539)
T COG1123         341 LPPSSGSIIF  350 (539)
T ss_pred             CCCCCceEEE
Confidence            7765  3555

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.9e-30  Score=212.63  Aligned_cols=146  Identities=29%  Similarity=0.400  Sum_probs=131.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC----CchhhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER----NLSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~----~~~~~~~~~g~v~  107 (240)
                      -+|+.++||+..+|++||++|.+||+++||||||||||||||||+++ ..+++|+|.++|.+.    ....+|+.+|+||
T Consensus         5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF   83 (240)
T COG1126           5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-EEPDSGSITVDGEDVGDKKDILKLRRKVGMVF   83 (240)
T ss_pred             EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-cCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence            36899999999999999999999999999999999999999999997 778999999999654    3456789999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++++|+.||+.++....  ...++++.++.+.++++++++.++.+.++...|++++||+.+|+++...
T Consensus        84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~  154 (240)
T COG1126          84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD  154 (240)
T ss_pred             ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence            9999999999999999876443  2456677788899999999999999999999999999999999999865

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.6e-29  Score=242.40  Aligned_cols=94  Identities=24%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             CCCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-------------
Q psy310           32 NTNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-------------   94 (240)
Q Consensus        32 ~~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-------------   94 (240)
                      -+|+.+.|+    ..++|++|||+|++||++|||||||||||||+++|+|+ .+|.+|.|.++|...             
T Consensus        15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-l~p~~G~i~~~g~~~~~~~~~~~~~~~~   93 (623)
T PRK10261         15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL-LEQAGGLVQCDKMLLRRRSRQVIELSEQ   93 (623)
T ss_pred             EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCeEEEECCEEeccccccccccccC
Confidence            456777775    35799999999999999999999999999999999997 557899999987522             


Q ss_pred             Cc---hhhh-hhceEEcccc--cccccccHHHHHHHHH
Q psy310           95 NL---SQFR-KLSCYIMQDN--QLHANLTVEEAMNVAT  126 (240)
Q Consensus        95 ~~---~~~~-~~~g~v~Q~~--~~~~~ltv~e~l~~~~  126 (240)
                      ..   ...+ ..++||+|++  .+.+.+++.+++.+..
T Consensus        94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~  131 (623)
T PRK10261         94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI  131 (623)
T ss_pred             CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHH
Confidence            10   1122 3689999998  5777899999987653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.8e-29  Score=235.43  Aligned_cols=83  Identities=22%  Similarity=0.379  Sum_probs=73.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++.        ..++|++|++.+
T Consensus         5 ~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~~--------~~i~~~~q~~~~   75 (530)
T PRK15064          5 ANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-LEPSAGNVSLDPN--------ERLGKLRQDQFA   75 (530)
T ss_pred             EEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC--------CEEEEEeccCCc
Confidence            5788889889999999999999999999999999999999999997 5678999999873        348999999888


Q ss_pred             cccccHHHHHHH
Q psy310          113 HANLTVEEAMNV  124 (240)
Q Consensus       113 ~~~ltv~e~l~~  124 (240)
                      +..+++.+++.+
T Consensus        76 ~~~~tv~e~l~~   87 (530)
T PRK15064         76 FEEFTVLDTVIM   87 (530)
T ss_pred             CCCCcHHHHHHH
Confidence            888898888764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=8.2e-29  Score=236.15  Aligned_cols=84  Identities=31%  Similarity=0.353  Sum_probs=74.7

Q ss_pred             CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      -+|+++.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+.+.        ..++||+|++
T Consensus         9 i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-~~p~~G~i~~~~~--------~~i~~v~Q~~   79 (556)
T PRK11819          9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKEFEGEARPAPG--------IKVGYLPQEP   79 (556)
T ss_pred             EeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC--------CEEEEEecCC
Confidence            357888998 78999999999999999999999999999999999997 5678999998642        3589999999


Q ss_pred             cccccccHHHHHHH
Q psy310          111 QLHANLTVEEAMNV  124 (240)
Q Consensus       111 ~~~~~ltv~e~l~~  124 (240)
                      .+++.+|+.+++.+
T Consensus        80 ~~~~~~tv~e~l~~   93 (556)
T PRK11819         80 QLDPEKTVRENVEE   93 (556)
T ss_pred             CCCCCCcHHHHHHH
Confidence            98888999998865

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=223.02  Aligned_cols=195  Identities=25%  Similarity=0.302  Sum_probs=143.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~Q  108 (240)
                      .++.+.|++..+.++|||+|.+||+.||+|+||||||||+++|.|++ .|++|+|.++|+.+.+.    ..+.-+|+|+|
T Consensus         8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ   86 (501)
T COG3845           8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ   86 (501)
T ss_pred             eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence            46789999999999999999999999999999999999999999984 57999999999987542    34567899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc--------
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR--------  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  180 (240)
                      ++.+.+.+||.||+.+.........++....++.++++.++.++.-..+......+-+++|++.+..+++..        
T Consensus        87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE  166 (501)
T COG3845          87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE  166 (501)
T ss_pred             ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC
Confidence            999999999999998654321112234444455566666665554433333333333333333332221110        


Q ss_pred             --------------------------------------------------------------------------------
Q psy310          181 --------------------------------------------------------------------------------  180 (240)
Q Consensus       181 --------------------------------------------------------------------------------  180 (240)
                                                                                                      
T Consensus       167 PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~  246 (501)
T COG3845         167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRV  246 (501)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCcccccc
Confidence                                                                                            


Q ss_pred             ---------------------cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 ---------------------IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ---------------------~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                                           ..+-..++++||+|++||+++|.|-.|.|.+.|+.+|+|++++  +.+++
T Consensus       247 ~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l  317 (501)
T COG3845         247 VKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL  317 (501)
T ss_pred             ccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEE
Confidence                                 0012469999999999999999999999999999999999743  34544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=3.6e-28  Score=231.58  Aligned_cols=84  Identities=30%  Similarity=0.342  Sum_probs=74.6

Q ss_pred             CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      -+|+.+.|+ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++        ...++|++|++
T Consensus         7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-~~p~~G~i~~~~--------~~~i~~v~Q~~   77 (552)
T TIGR03719         7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-DKEFNGEARPAP--------GIKVGYLPQEP   77 (552)
T ss_pred             EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecC--------CCEEEEEeccC
Confidence            367888887 78899999999999999999999999999999999997 567899999865        23589999999


Q ss_pred             cccccccHHHHHHH
Q psy310          111 QLHANLTVEEAMNV  124 (240)
Q Consensus       111 ~~~~~ltv~e~l~~  124 (240)
                      .+++.+|+.|++.+
T Consensus        78 ~~~~~~tv~e~i~~   91 (552)
T TIGR03719        78 QLDPTKTVRENVEE   91 (552)
T ss_pred             CCCCCCcHHHHHHH
Confidence            88888999998865

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.95  E-value=3.1e-28  Score=217.88  Aligned_cols=145  Identities=24%  Similarity=0.328  Sum_probs=129.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.||+..+++|+||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++. .++.++.+++|||+..
T Consensus         9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA   87 (352)
T COG3842           9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYA   87 (352)
T ss_pred             EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCChhhcccceeecCcc
Confidence            5799999999999999999999999999999999999999999998 7789999999999874 4566789999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++||.||+.|...  +.....+...++++.++++.+++.+...+.++..|++++|++.+|+++...
T Consensus        88 LFPHltV~~NVafGLk--~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~  154 (352)
T COG3842          88 LFPHMTVEENVAFGLK--VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPE  154 (352)
T ss_pred             cCCCCcHHHHhhhhhh--hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcC
Confidence            9999999999998754  223344556778899999999999999999999999999999999988754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.95  E-value=6.1e-28  Score=227.27  Aligned_cols=83  Identities=33%  Similarity=0.402  Sum_probs=72.7

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      +.+|+...++++++|+++||+|.+|+++||||+|||||||||++|+|. ..|++|+|.+.+.        -.++|+.|++
T Consensus         5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~-~~~~~G~i~~~~~--------~~v~~l~Q~~   75 (530)
T COG0488           5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE-LEPDSGEVTRPKG--------LRVGYLSQEP   75 (530)
T ss_pred             EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC-CcCCCCeEeecCC--------ceEEEeCCCC
Confidence            356899999999999999999999999999999999999999999997 5688999988652        3489999999


Q ss_pred             cccccccHHHHH
Q psy310          111 QLHANLTVEEAM  122 (240)
Q Consensus       111 ~~~~~ltv~e~l  122 (240)
                      ......|+.+.+
T Consensus        76 ~~~~~~tv~~~v   87 (530)
T COG0488          76 PLDPEKTVLDYV   87 (530)
T ss_pred             CcCCCccHHHHH
Confidence            988877776543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-28  Score=236.64  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=55.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH   92 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~   92 (240)
                      +|+++.|+++.+|+++||+|.+||++||||||||||||||++|+|+ .+|++|+|.+.+.
T Consensus         5 ~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-~~pd~G~I~~~~~   63 (638)
T PRK10636          5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE-ISADGGSYTFPGN   63 (638)
T ss_pred             EEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEecCC
Confidence            5789999999999999999999999999999999999999999997 5688999999874

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.6e-27  Score=210.96  Aligned_cols=144  Identities=26%  Similarity=0.334  Sum_probs=129.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.||+..+++++||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++. ..+..+.++||||++.
T Consensus         7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA   85 (338)
T COG3839           7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYA   85 (338)
T ss_pred             eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence            6889999998899999999999999999999999999999999997 7789999999999875 3566789999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++++|||++|+.+.....   ...+....++++++.+.+++.+...+.+...|++++|++.++++++..
T Consensus        86 LyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~  151 (338)
T COG3839          86 LYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK  151 (338)
T ss_pred             ccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence            999999999999986543   345667788888899999999999999999999999999999999876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.7e-27  Score=202.30  Aligned_cols=142  Identities=24%  Similarity=0.345  Sum_probs=125.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .++.+.|+...+|+++||+|.+||+++||||||||||||||+|+|+ ..|.+|+|.++|..+  ......++||||++.+
T Consensus         7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-~~p~~G~V~~~g~~v--~~p~~~~~~vFQ~~~L   83 (248)
T COG1116           7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-EKPTSGEVLLDGRPV--TGPGPDIGYVFQEDAL   83 (248)
T ss_pred             EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCccc--CCCCCCEEEEeccCcc
Confidence            5788999999999999999999999999999999999999999997 678999999999876  2345678999999999


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++-.|+.+|+.+.....   ...+.+..+.++++++.+++.+....++...|++++|++.+++++...
T Consensus        84 lPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~  148 (248)
T COG1116          84 LPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR  148 (248)
T ss_pred             cchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence            99999999999875443   134455566899999999999999999999999999999999999875

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.95  E-value=8.1e-27  Score=225.56  Aligned_cols=60  Identities=25%  Similarity=0.348  Sum_probs=55.1

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH   92 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~   92 (240)
                      -+|+++.++++++|+++||+|++||++||+|||||||||||++|+|+ .+|++|+|.+.+.
T Consensus         6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-~~p~~G~I~~~~~   65 (635)
T PRK11147          6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-VLLDDGRIIYEQD   65 (635)
T ss_pred             EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCeEEEeCCC
Confidence            35788999999999999999999999999999999999999999997 5678999999763

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=1.4e-26  Score=207.14  Aligned_cols=195  Identities=24%  Similarity=0.273  Sum_probs=148.9

Q ss_pred             CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCc---hhhh-
Q psy310           33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNL---SQFR-  100 (240)
Q Consensus        33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~---~~~~-  100 (240)
                      .|.+.+|+    ...++++|||+|++||.++|||+||||||-.+..|+++++.+    .+|+|.++|.+.-.   .+++ 
T Consensus        10 ~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~   89 (534)
T COG4172          10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRG   89 (534)
T ss_pred             eccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhh
Confidence            45666666    788999999999999999999999999999999999986543    37999999987631   2222 


Q ss_pred             ---hhceEEcccccc--cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh---ccCCCCCchhhHHH
Q psy310          101 ---KLSCYIMQDNQL--HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC---FLSGPWGTFESSVL  172 (240)
Q Consensus       101 ---~~~g~v~Q~~~~--~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~  172 (240)
                         ..++++||+|..  .+-.++...+.....  ...++.+.+.+.++.++++.+++.+...+   ++...++++.|+++
T Consensus        90 iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~--~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVM  167 (534)
T COG4172          90 VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR--LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVM  167 (534)
T ss_pred             hcccceEEEecccccccCcHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHH
Confidence               478999999863  344566555443332  33456667777788889999998766544   56667888899988


Q ss_pred             HHHHHhccc-----------------------------------------------------------------------
Q psy310          173 LALAMYNRI-----------------------------------------------------------------------  181 (240)
Q Consensus       173 ~~~~~~~~~-----------------------------------------------------------------------  181 (240)
                      +++++.+..                                                                       
T Consensus       168 IAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             HHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence            877643210                                                                       


Q ss_pred             --------------------------------------------------ccceeeccceeEEeCCcEEEEEcCCCCCHH
Q psy310          182 --------------------------------------------------HEKTILKSVSGRLRSGELTAIMGPSGAGKS  211 (240)
Q Consensus       182 --------------------------------------------------~~~~il~~vsl~I~~Ge~valvG~NGsGKS  211 (240)
                                                                        +...+++++||++++|+.++|||++|||||
T Consensus       248 ~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKs  327 (534)
T COG4172         248 APQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKS  327 (534)
T ss_pred             CCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcc
Confidence                                                              012489999999999999999999999999


Q ss_pred             HHHHHHhCC-cccchhhhc
Q psy310          212 TLLNILTGY-KILRQLWLL  229 (240)
Q Consensus       212 TLlk~l~G~-~~~~~~~~~  229 (240)
                      ||.++|.++ ...+++||.
T Consensus       328 TlG~allrL~~s~G~I~F~  346 (534)
T COG4172         328 TLGLALLRLIPSQGEIRFD  346 (534)
T ss_pred             hHHHHHHhhcCcCceEEEC
Confidence            999999998 444688874

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.7e-26  Score=213.79  Aligned_cols=120  Identities=28%  Similarity=0.312  Sum_probs=96.5

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~  107 (240)
                      -.|+.+.|++.++|++|||+|++||+++|+|+||||||||+|+|+|. .+|++|+|.++|....+.    ....-+..|+
T Consensus        11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~   89 (500)
T COG1129          11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-YPPDSGEILIDGKPVAFSSPRDALAAGIATVH   89 (500)
T ss_pred             eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-ccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence            46899999999999999999999999999999999999999999998 458999999999877542    2235678999


Q ss_pred             ccccccccccHHHHHHHHHHHhc-CCCccHHHHHHHHHHhhhcCCc
Q psy310          108 QDNQLHANLTVEEAMNVATALKL-GKDLTKAARKDVVRTLFYRSDT  152 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~  152 (240)
                      |+..+.+.+||.||+.+...... ...++.....+.+++++..++.
T Consensus        90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~  135 (500)
T COG1129          90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGL  135 (500)
T ss_pred             echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCC
Confidence            99999999999999986543222 1234555556666666665544

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-26  Score=201.13  Aligned_cols=144  Identities=29%  Similarity=0.314  Sum_probs=127.9

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRK  101 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~  101 (240)
                      +++++.|..     ..++++|||+|++||++||||.||||||||+|+|+++ ..|++|+|.++|.++.      +++.|+
T Consensus         5 ~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr~~R~   83 (339)
T COG1135           5 ENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELRQLRQ   83 (339)
T ss_pred             EeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHHHHHh
Confidence            356666665     5799999999999999999999999999999999997 7789999999997653      456789


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+||+||++.++...||++|++++..+.   ..++..++.++.++++.+++.+..+.++...|++++|++.+|++++..
T Consensus        84 ~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          84 KIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             hccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence            9999999999999999999999986654   256778888999999999999999999999999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=5.5e-26  Score=192.96  Aligned_cols=199  Identities=22%  Similarity=0.259  Sum_probs=157.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      -.|+++.|+++.+++++||+|++||+++|||||||||||+||+|+++ ..|++|+|.++|.+..   ...+|+.+|||-|
T Consensus         4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-iept~G~I~i~g~~i~~~d~~~LRr~IGYviQ   82 (309)
T COG1125           4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-IEPTSGEILIDGEDISDLDPVELRRKIGYVIQ   82 (309)
T ss_pred             eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-cCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence            36899999999999999999999999999999999999999999997 5689999999998764   3567899999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhccc-----
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYNRI-----  181 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  181 (240)
                      .-.+++++|+.||+..-..+.   ..+++..+++++++++.++++  +...++++..|++++|++-+++++....     
T Consensus        83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM  159 (309)
T COG1125          83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM  159 (309)
T ss_pred             hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence            999999999999998765443   346677788899999999886  4678888899999999988887765421     


Q ss_pred             -------------------------ccce---eeccceeEEeCCcEEEEEcCCCC-------------CHHHHHHHHhCC
Q psy310          182 -------------------------HEKT---ILKSVSGRLRSGELTAIMGPSGA-------------GKSTLLNILTGY  220 (240)
Q Consensus       182 -------------------------~~~~---il~~vsl~I~~Ge~valvG~NGs-------------GKSTLlk~l~G~  220 (240)
                                               -+++   +=+|++=.++=|++++++. .|-             =++-|++.+.|-
T Consensus       160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~  238 (309)
T COG1125         160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGE  238 (309)
T ss_pred             cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence                                     0222   2377777788899999998 222             157788888886


Q ss_pred             cccchhhhccCChhh
Q psy310          221 KILRQLWLLEYSHKD  235 (240)
Q Consensus       221 ~~~~~~~~~~~~~~~  235 (240)
                      -.+..-|+...+-++
T Consensus       239 ~~~~~~~l~~~~~~~  253 (309)
T COG1125         239 SERGLRLLSLVSVAD  253 (309)
T ss_pred             ccccccccchhhHHH
Confidence            433333334444333

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.94  E-value=2.6e-26  Score=187.42  Aligned_cols=144  Identities=28%  Similarity=0.338  Sum_probs=126.8

Q ss_pred             CCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310           33 TNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~  105 (240)
                      .|+.++|+.-+ +|+||||+|++||++-|+||||||||||||+|.+. ..|..|+|.++|+++.      .+-+|+.+|+
T Consensus         5 ~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv   83 (223)
T COG2884           5 ENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-ERPTRGKILVNGHDLSRLKGREIPFLRRQIGV   83 (223)
T ss_pred             hhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-hcCCCceEEECCeecccccccccchhhheeee
Confidence            46777777644 99999999999999999999999999999999997 6789999999998863      3457899999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||||..++++.|+.||++++....   +......++.+.++++.+++.+....+++..|++++|++.+|+++++.
T Consensus        84 VFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~  155 (223)
T COG2884          84 VFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ  155 (223)
T ss_pred             EeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence            999999999999999999876543   335567788888999999999999999999999999999999999875

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=1.4e-25  Score=189.69  Aligned_cols=144  Identities=30%  Similarity=0.348  Sum_probs=117.7

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhh-hh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQF-RK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~-~~  101 (240)
                      +|+.+.|+.    ..+|+++||+|++||+++|+|||||||||||.+|.|+ ..|++|.|.++|.+...      ..+ ++
T Consensus         5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-d~pt~G~v~i~g~d~~~l~~~~~~~~R~~   83 (226)
T COG1136           5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-DKPTSGEVLINGKDLTKLSEKELAKLRRK   83 (226)
T ss_pred             eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence            455665543    4799999999999999999999999999999999997 66799999999977642      122 46


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-hccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-CFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+|||||+..+.+.+|+.||+.++..+..   .......+.+..+++.+++.+... .++...|++++||+.+|+++...
T Consensus        84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          84 KIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             hEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            79999999999999999999998764432   122245677888889999986665 67778999999999999999875

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.93  E-value=2.6e-26  Score=197.68  Aligned_cols=171  Identities=23%  Similarity=0.279  Sum_probs=138.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      +|++..|+++++++++||+|++||+++|+||||||||||||+|+|+ .+|.+|+|.++|+++.   ..++++.++||+|.
T Consensus         6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~   84 (258)
T COG1120           6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS   84 (258)
T ss_pred             EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-CCCCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence            5789999999999999999999999999999999999999999997 5688999999998763   45678899999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccc------
Q psy310          110 NQLHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIH------  182 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  182 (240)
                      +.....++|.|.+.+...-+.... ...++..+.+.+.++.+++.+...+.....|++++|++.+|+++++..+      
T Consensus        85 ~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE  164 (258)
T COG1120          85 PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE  164 (258)
T ss_pred             CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence            988899999998886543222111 1123334577888999999999999999999999999999998876311      


Q ss_pred             ------------------------cc---eeeccceeEEeCCcEEEEEc
Q psy310          183 ------------------------EK---TILKSVSGRLRSGELTAIMG  204 (240)
Q Consensus       183 ------------------------~~---~il~~vsl~I~~Ge~valvG  204 (240)
                                              +.   .+++|+++..+-.+++.++-
T Consensus       165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk  213 (258)
T COG1120         165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK  213 (258)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence                                    12   37899998777777666654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1e-25  Score=195.62  Aligned_cols=147  Identities=25%  Similarity=0.330  Sum_probs=127.7

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc---cCCc-hhhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL-SQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~---~~~~-~~~~~~~g~v~  107 (240)
                      -.|+++.++...+++||+++|+.||.++|+||||||||||||+|+|+ ..|++|+|.++|+   |... ....+.+||||
T Consensus         5 i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF   83 (345)
T COG1118           5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF   83 (345)
T ss_pred             ehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-CCCCCceEEECCEeccchhccchhhcceeEEE
Confidence            46789999999999999999999999999999999999999999997 6789999999998   5533 44568899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+..++++|||.+|++|..... ....++...+..+.+++..+.+.+...+++...+++++|++.+++++...
T Consensus        84 Q~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e  155 (345)
T COG1118          84 QHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE  155 (345)
T ss_pred             echhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence            9999999999999999976443 22334556677888899999999999999999999999999999998754

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=4.9e-25  Score=194.77  Aligned_cols=145  Identities=27%  Similarity=0.338  Sum_probs=125.1

Q ss_pred             CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310           32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q  108 (240)
                      -.|+.+.++ .+.+|++|||+|++||++||+||||||||||+|+|+|+ ..|++|+|.+.|.+...  ...++.+||++|
T Consensus         7 ~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~   85 (293)
T COG1131           7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ   85 (293)
T ss_pred             ecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence            468999999 79999999999999999999999999999999999997 56799999999987643  466788999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|++|++.+...++...   .....+.++++++.+++.+.........|.++++++.++.++...
T Consensus        86 ~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~  154 (293)
T COG1131          86 EPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD  154 (293)
T ss_pred             CCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence            999999999999999877665322   134456788899999988865666778899999999999999876

>PRK13409 putative ATPase RIL; Provisional

Probab=99.93  E-value=1.9e-25  Score=214.01  Aligned_cols=65  Identities=25%  Similarity=0.351  Sum_probs=56.4

Q ss_pred             CcccCCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-----------ECCccC
Q psy310           28 NTNTNTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-----------INGHER   94 (240)
Q Consensus        28 ~~~~~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-----------v~g~~~   94 (240)
                      -.+-.+++..+|+.. .+|++++ .+++||++||+|||||||||||++|+|+ .+|+.|+|.           +.|.++
T Consensus        72 p~~~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~-l~p~~G~i~~~~~~~~~~~~~~G~~l  148 (590)
T PRK13409         72 PEELEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE-LIPNLGDYEEEPSWDEVLKRFRGTEL  148 (590)
T ss_pred             chhhccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCccccCCCcHHHHHHHhCChHH
Confidence            345567788999875 6999999 9999999999999999999999999997 567899997           778765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=6.7e-25  Score=184.55  Aligned_cols=146  Identities=29%  Similarity=0.275  Sum_probs=120.2

Q ss_pred             CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310           33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~  105 (240)
                      +|+++.| +++.+|++|||+|++||+|+|||+||||||||||+|+|+ ..+.+|+|.++|.+..      .+.+++.+||
T Consensus         7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm   85 (258)
T COG3638           7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VDPTSGEILFNGVQITKLKGKELRKLRRDIGM   85 (258)
T ss_pred             eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cCCCcceEEecccchhccchHHHHHHHHhcee
Confidence            6788899 999999999999999999999999999999999999997 6678999999997652      3566789999


Q ss_pred             EcccccccccccHHHHHHHHHHHhc------CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKL------GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~------~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +||++.+.+.++|.+|+.....-+.      -...+++ .+..+-..++++++.+..-...+..|++++||+.+++++++
T Consensus        86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~-dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q  164 (258)
T COG3638          86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ  164 (258)
T ss_pred             EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH-HHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence            9999999999999999886532111      1122333 34455567888999888877778889999999999999877


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       165 ~  165 (258)
T COG3638         165 Q  165 (258)
T ss_pred             C
Confidence            4

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=1.2e-24  Score=183.52  Aligned_cols=146  Identities=27%  Similarity=0.313  Sum_probs=126.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~  105 (240)
                      -+++..++|++.++++++|+|++||+++|+||||||||||||+|.|+ ..|++|+|.++|.++.      ....++.+|+
T Consensus        11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv   89 (263)
T COG1127          11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-LRPDKGEILIDGEDIPQLSEEELYEIRKRMGV   89 (263)
T ss_pred             EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-CCCCCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence            46788999999999999999999999999999999999999999998 6689999999998763      2345788999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +||...++..++|+||+.+...-+  ..+++...++.+..-++.+++... ...+++..++++.+++.+|++++..
T Consensus        90 lFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          90 LFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             EeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            999999999999999999875433  246677777777777888888877 7778889999999999999999865

>PLN03073 ABC transporter F family; Provisional

Probab=99.92  E-value=6e-25  Score=214.39  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             ccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC--CCCCccEEEECCc
Q psy310           30 NTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--TSGTEGSITINGH   92 (240)
Q Consensus        30 ~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~--~~~~~G~V~v~g~   92 (240)
                      -.-.|+++.|+++++|+++||+|.+||++||||+||||||||||+|+|..  ..|.+|+|.+.++
T Consensus       178 I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q  242 (718)
T PLN03073        178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ  242 (718)
T ss_pred             EEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence            44568999999999999999999999999999999999999999999953  1356789876443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.7e-24  Score=185.65  Aligned_cols=177  Identities=25%  Similarity=0.332  Sum_probs=132.1

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -.|+.+.|+.+++|++|||+|++|++++||||||||||||+|+|.|+ ..|.+|+|.+.|........+.++|||||...
T Consensus         7 v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~   85 (254)
T COG1121           7 VENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS   85 (254)
T ss_pred             EeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CcCCcceEEEccccccccccCCeEEEcCcccc
Confidence            35788889876899999999999999999999999999999999997 56889999999976543333468999999764


Q ss_pred             cc--ccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310          112 LH--ANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL  187 (240)
Q Consensus       112 ~~--~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il  187 (240)
                      +.  .-.||+|.+......+.+  ....+ ..++.++++++++++.+...+.+...|+++.|++.+|++++... +-.+|
T Consensus        86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p-~lllL  163 (254)
T COG1121          86 VDRSFPITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP-DLLLL  163 (254)
T ss_pred             cCCCCCcCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC-CEEEe
Confidence            33  346899988764322111  11222 33677888999999999999999999999999999999998862 22333


Q ss_pred             ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +...-.|..           .+...++++|..++.
T Consensus       164 DEP~~gvD~-----------~~~~~i~~lL~~l~~  187 (254)
T COG1121         164 DEPFTGVDV-----------AGQKEIYDLLKELRQ  187 (254)
T ss_pred             cCCcccCCH-----------HHHHHHHHHHHHHHH
Confidence            433333322           155666666666543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=6e-24  Score=192.32  Aligned_cols=144  Identities=26%  Similarity=0.342  Sum_probs=123.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~   86 (353)
T TIGR03265         8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA   86 (353)
T ss_pred             EEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence            5788899988999999999999999999999999999999999997 6688999999998763 2334678999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.....   ...+......++++++.+++.+...+.....|++++|++.++++++..
T Consensus        87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~  152 (353)
T TIGR03265        87 LFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS  152 (353)
T ss_pred             cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999998764321   233444566778889999998888888888999999999999999875

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=6.1e-24  Score=192.45  Aligned_cols=144  Identities=22%  Similarity=0.277  Sum_probs=121.9

Q ss_pred             CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310           33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.+ +++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++
T Consensus         7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~   85 (356)
T PRK11650          7 QAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-ERITSGEIWIGGRVVNELEPADRDIAMVFQNY   85 (356)
T ss_pred             EeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence            5788888 788999999999999999999999999999999999997 6689999999998763 233457899999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+|+.|++.+.....   ........+.+.++++.+++.+...+.+...|++++|++.++++++..
T Consensus        86 ~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~  152 (356)
T PRK11650         86 ALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE  152 (356)
T ss_pred             cccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999998764321   233444456678888989998888888888999999999999999875

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.91  E-value=8.2e-24  Score=188.05  Aligned_cols=145  Identities=26%  Similarity=0.313  Sum_probs=119.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQD  109 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~  109 (240)
                      -+|+.+.|++..+|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|+
T Consensus        10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~   88 (306)
T PRK13537         10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-THPDAGSISLCGEPVPSRARHARQRVGVVPQF   88 (306)
T ss_pred             EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEecccchHHHHhcEEEEecc
Confidence            46889999999999999999999999999999999999999999997 56889999999987532  2356789999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+|+.|++.+.....   ........+.+.++++.+++.+.........|.++++++.+++++.+.
T Consensus        89 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~  156 (306)
T PRK13537         89 DNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVND  156 (306)
T ss_pred             CcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence            99999999999998644322   123333345567788888887777777778899999999999999875

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=9.8e-24  Score=190.74  Aligned_cols=144  Identities=23%  Similarity=0.376  Sum_probs=122.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.. ...++.++||||++.
T Consensus        10 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~   88 (351)
T PRK11432         10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYA   88 (351)
T ss_pred             EeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence            5788889888999999999999999999999999999999999997 66889999999987632 234578999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.....   ...+....+.+.++++.+++.+...+.....|++++|++.++++++..
T Consensus        89 lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~  154 (351)
T PRK11432         89 LFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK  154 (351)
T ss_pred             cCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999999998864321   233445566778888888888877777888899999999999999875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=1.5e-23  Score=179.14  Aligned_cols=145  Identities=26%  Similarity=0.349  Sum_probs=116.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v  106 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...      ...++.++|+
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v   82 (235)
T cd03261           4 RGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-LRPDSGEVLIDGEDISGLSEAELYRLRRRMGML   82 (235)
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccChhhHHHHhcceEEE
Confidence            4678888888999999999999999999999999999999999997 56789999999976532      2345679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+|+.+++.+.....  .........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        83 ~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~  154 (235)
T cd03261          83 FQSGALFDSLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALD  154 (235)
T ss_pred             ccCcccCCCCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999988899999987653221  1122333345567778888887666666677889999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.7e-24  Score=176.34  Aligned_cols=145  Identities=23%  Similarity=0.270  Sum_probs=126.1

Q ss_pred             CCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC--CchhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER--NLSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~--~~~~~~~~~g~v~Q  108 (240)
                      -+++.+.|+... +++||||+++.||++||+|||||||||+||+|+++ ..|++|.|.++|.+.  .+...++.+|+++.
T Consensus         4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~   82 (245)
T COG4555           4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG   82 (245)
T ss_pred             eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-ccCCCceEEEeecccccChHHHhhhcceecC
Confidence            356778888876 99999999999999999999999999999999998 568999999999876  34557899999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +..++..+|++|++.+-..+.   ++.....+.++..+.+++++.+..++...+.|.+++|++.+|+++++.
T Consensus        83 e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          83 ERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             CcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            999999999999998765543   345556677788899999999888888888999999999999999886

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.91  E-value=1.7e-23  Score=190.59  Aligned_cols=146  Identities=18%  Similarity=0.278  Sum_probs=122.9

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD  109 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~  109 (240)
                      .-+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus        16 ~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~   94 (375)
T PRK09452         16 ELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-ETPDSGRIMLDGQDITHVPAENRHVNTVFQS   94 (375)
T ss_pred             EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence            346889999998999999999999999999999999999999999997 5678999999998763 23345789999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+++.|++.+.....   .......++.+.++++.+++.+.....+...|++++|++.++++++..
T Consensus        95 ~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~  162 (375)
T PRK09452         95 YALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK  162 (375)
T ss_pred             cccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999998764321   223444455677788888888877778888899999999999999875

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.91  E-value=2.5e-23  Score=176.17  Aligned_cols=144  Identities=24%  Similarity=0.323  Sum_probs=116.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|++
T Consensus         4 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (220)
T cd03265           4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-LKPTSGRATVAGHDVVREPREVRRRIGIVFQDL   82 (220)
T ss_pred             EEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEecCcChHHHhhcEEEecCCc
Confidence            4778888888999999999999999999999999999999999997 56789999999976431  23456799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.+++.+.....   ........+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus        83 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~  149 (220)
T cd03265          83 SVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHR  149 (220)
T ss_pred             cccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9888899999987654322   122223345567788888887666666677889999999999999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=1.8e-24  Score=177.92  Aligned_cols=147  Identities=24%  Similarity=0.337  Sum_probs=124.1

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchh----hhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ----FRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~----~~~~~g~v~  107 (240)
                      -.|+.+.|+.++++++|||+|++||+|||+|||||||||.+-++.|+ .+|++|.|.+++.++...+    .+.-+||++
T Consensus         7 a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-v~~d~G~i~ld~~diT~lPm~~RArlGigYLp   85 (243)
T COG1137           7 AENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-VRPDSGKILLDDEDITKLPMHKRARLGIGYLP   85 (243)
T ss_pred             ehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-EecCCceEEECCcccccCChHHHhhcCccccc
Confidence            46788999999999999999999999999999999999999999997 6689999999999875322    345689999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++..+||++|++....... .......+++.+.++++.+.+.|.....-...|++++.++.+|+++...
T Consensus        86 QE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~  157 (243)
T COG1137          86 QEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN  157 (243)
T ss_pred             ccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence            99999999999999987644332 1233345566778899999999988887777899999999999998764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.91  E-value=2.6e-23  Score=175.56  Aligned_cols=144  Identities=31%  Similarity=0.395  Sum_probs=114.0

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-h-----h-hhh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-S-----Q-FRK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~-----~-~~~  101 (240)
                      +|+.+.+++    +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... .     . .++
T Consensus         4 ~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   82 (218)
T cd03255           4 KNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-DRPTSGEVRVDGTDISKLSEKELAAFRRR   82 (218)
T ss_pred             eeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-cCCCceeEEECCEehhhcchhHHHHHHhh
Confidence            467777776    7899999999999999999999999999999999997 56789999999976532 1     1 245


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++|++|++.+++.+++.|++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        83 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  158 (218)
T cd03255          83 HIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND  158 (218)
T ss_pred             cEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence            7999999999988899999988754321   112223344566778888887666666677889999999999999875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.91  E-value=2.5e-23  Score=175.20  Aligned_cols=144  Identities=26%  Similarity=0.336  Sum_probs=115.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   82 (213)
T cd03259           4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYA   82 (213)
T ss_pred             eeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcCcCchhhccEEEEcCchh
Confidence            4678888888999999999999999999999999999999999997 56789999999976532 223467899999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+++.+.....   ........+.+.+++..+++.+.........|++++|++.+++++...
T Consensus        83 ~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~  148 (213)
T cd03259          83 LFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALARE  148 (213)
T ss_pred             hccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            888899999987653221   122233344567778888887666666677889999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.91  E-value=2.5e-23  Score=188.81  Aligned_cols=144  Identities=22%  Similarity=0.323  Sum_probs=122.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc--cEEEECCccCC-chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE--GSITINGHERN-LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~--G~V~v~g~~~~-~~~~~~~~g~v~Q~  109 (240)
                      +|+.+.|+.+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++  |+|.++|.+.. ....++.++||||+
T Consensus         9 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~   87 (362)
T TIGR03258         9 DHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQN   87 (362)
T ss_pred             EEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
Confidence            5788899988999999999999999999999999999999999997 66789  99999998763 22345779999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+|++|++.+.....   ........+.+.++++.+++.+...+.+...|++++|++.++++++..
T Consensus        88 ~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~  155 (362)
T TIGR03258        88 YALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE  155 (362)
T ss_pred             cccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999998764322   233444556678888888988888888888999999999999999875

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.6e-23  Score=187.34  Aligned_cols=144  Identities=24%  Similarity=0.272  Sum_probs=118.7

Q ss_pred             CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310           33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~  102 (240)
                      +|+++.|+    ..++|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.++..      ...++.
T Consensus         5 ~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-~~p~~G~I~i~G~~i~~~~~~~l~~~r~~   83 (343)
T TIGR02314         5 SNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERPTSGSVIVDGQDLTTLSNSELTKARRQ   83 (343)
T ss_pred             EEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            46677774    24799999999999999999999999999999999997 66889999999987632      124668


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|+||++.+++..|+.+++.+.....   ...+....+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~  158 (343)
T TIGR02314        84 IGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASN  158 (343)
T ss_pred             EEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999998754322   223444556677888989998888888888999999999999999875

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.90  E-value=2.7e-23  Score=188.05  Aligned_cols=147  Identities=25%  Similarity=0.334  Sum_probs=121.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~   84 (353)
T PRK10851          6 ANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA   84 (353)
T ss_pred             EEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence            4678888888999999999999999999999999999999999997 5688999999998763 2234567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.|++.+....... .........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~  154 (353)
T PRK10851         85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVE  154 (353)
T ss_pred             cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999876432100 1223344456778888888888877777788899999999999999875

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.90  E-value=3.3e-23  Score=174.82  Aligned_cols=167  Identities=17%  Similarity=0.259  Sum_probs=126.6

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhce
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g  104 (240)
                      +|+.+.+++  +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...      ...++.++
T Consensus         5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~   83 (216)
T TIGR00960         5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-EKPTRGKIRFNGQDLTRLRGREIPFLRRHIG   83 (216)
T ss_pred             EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEehhhcChhHHHHHHHhce
Confidence            466777754  4799999999999999999999999999999999997 56789999999976521      12456799


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccc
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEK  184 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (240)
                      |++|++.+++.+++.|++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...    
T Consensus        84 ~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~----  156 (216)
T TIGR00960        84 MVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK----  156 (216)
T ss_pred             EEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC----
Confidence            9999999888899999988653321   122223345567778888887766666677889999999999999875    


Q ss_pred             eeeccceeEEeCCcEEEEEcCCCC-----CHHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGA-----GKSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGs-----GKSTLlk~l~G~  220 (240)
                                   ..+.|+.++-+     .+..+.++|.-+
T Consensus       157 -------------p~llllDEPt~~LD~~~~~~l~~~l~~~  184 (216)
T TIGR00960       157 -------------PPLLLADEPTGNLDPELSRDIMRLFEEF  184 (216)
T ss_pred             -------------CCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence                         23555555554     455566666554

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.1e-23  Score=189.06  Aligned_cols=145  Identities=24%  Similarity=0.318  Sum_probs=122.8

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN  110 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~  110 (240)
                      -+|+.+.+++..+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++. ....++.++||||++
T Consensus        22 l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~  100 (377)
T PRK11607         22 IRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSY  100 (377)
T ss_pred             EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHCCEEEEeCCC
Confidence            36888899888999999999999999999999999999999999997 6688999999998753 234567899999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+|+.||+.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus       101 ~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~  167 (377)
T PRK11607        101 ALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR  167 (377)
T ss_pred             ccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999998764322   223444556677888888888887788888999999999999999875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.90  E-value=3.9e-23  Score=173.70  Aligned_cols=143  Identities=19%  Similarity=0.270  Sum_probs=114.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+... ..++.++|++|++.+
T Consensus         4 ~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~   81 (210)
T cd03269           4 ENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-ILPDSGEVLFDGKPLDI-AARNRIGYLPEERGL   81 (210)
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCCchhH-HHHccEEEeccCCcC
Confidence            4677788888899999999999999999999999999999999997 56789999999986532 345679999999998


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.|++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        82 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  146 (210)
T cd03269          82 YPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHD  146 (210)
T ss_pred             CcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence            88899999987643221   122233345567777878877665566667889999999999999875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.90  E-value=5.1e-23  Score=174.25  Aligned_cols=142  Identities=26%  Similarity=0.342  Sum_probs=114.8

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      +|+.+.+++    +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..  ..++.++|++|
T Consensus         4 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~--~~~~~i~~v~q   80 (220)
T cd03293           4 RNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-ERPTSGEVLVDGEPVT--GPGPDRGYVFQ   80 (220)
T ss_pred             EEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECc--cccCcEEEEec
Confidence            467777776    7899999999999999999999999999999999997 5678999999997753  23567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+++.+.....   ........+.+..+++.+++.+.........|++++|++.+++++...
T Consensus        81 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~  149 (220)
T cd03293          81 QDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVD  149 (220)
T ss_pred             ccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            999888899999987653221   122233345567788888887766666777899999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.90  E-value=4.9e-23  Score=172.38  Aligned_cols=144  Identities=28%  Similarity=0.336  Sum_probs=115.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---c----hhhhhhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---L----SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~----~~~~~~~g~  105 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   .    ...++.++|
T Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   80 (206)
T TIGR03608         2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-EKFDSGQVYLNGKETPPLNSKKASKFRREKLGY   80 (206)
T ss_pred             cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence            4778888888999999999999999999999999999999999997 5678999999998742   1    123567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.|++.+.....   ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus        81 ~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~  152 (206)
T TIGR03608        81 LFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKD  152 (206)
T ss_pred             EecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999988899999988743221   122333345567788888887666666677889999999999999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.90  E-value=3.7e-23  Score=186.30  Aligned_cols=146  Identities=24%  Similarity=0.270  Sum_probs=120.0

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ  108 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q  108 (240)
                      .-+|+.+.|+++.+|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|
T Consensus        43 ~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q  121 (340)
T PRK13536         43 DLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-TSPDAGKITVLGVPVPARARLARARIGVVPQ  121 (340)
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence            347899999999999999999999999999999999999999999997 56789999999987532  234678999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.|++.+.....   ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus       122 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~  190 (340)
T PRK13536        122 FDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND  190 (340)
T ss_pred             CccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999999998643322   122233344566778888888777777778899999999999999875

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1.1e-23  Score=178.18  Aligned_cols=173  Identities=20%  Similarity=0.237  Sum_probs=136.7

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~  107 (240)
                      -.++.++||+-.++++|||+|.+||+++||||||||||||+++|+|++ .|++|+|.+.|.++..    ...+.-++.-|
T Consensus         7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTF   85 (250)
T COG0411           7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTF   85 (250)
T ss_pred             eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeec
Confidence            367899999999999999999999999999999999999999999985 5789999999998642    12345678899


Q ss_pred             ccccccccccHHHHHHHHHHHh--------cCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          108 QDNQLHANLTVEEAMNVATALK--------LGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~--------~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |.+.+++.+||.||+..+...+        .... .......+.+..+++.+++.+.........+.+.++++.++++++
T Consensus        86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa  165 (250)
T COG0411          86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA  165 (250)
T ss_pred             ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh
Confidence            9999999999999998864322        1111 134556677888999999999888887778888888899999998


Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCCcc
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGYKI  222 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~~~  222 (240)
                      ..                 .++.|+.++-+|     +-.+...|..+++
T Consensus       166 ~~-----------------P~lLLLDEPaAGln~~e~~~l~~~i~~i~~  197 (250)
T COG0411         166 TQ-----------------PKLLLLDEPAAGLNPEETEELAELIRELRD  197 (250)
T ss_pred             cC-----------------CCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence            76                 456677777666     3335555554443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.90  E-value=5.8e-23  Score=186.28  Aligned_cols=140  Identities=23%  Similarity=0.272  Sum_probs=117.5

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhh----hhhceEEccc
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQF----RKLSCYIMQD  109 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~----~~~~g~v~Q~  109 (240)
                      ++++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++..   ..+    ++.++||||+
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            467888999999999999999999999999999999999997 56899999999987642   222    5689999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+|+.|++.+.....   ........+.+.++++.+++.+.....+...|++++|++.++++++..
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~  147 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAE  147 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999998764332   223444566778888888988777777788899999999999999875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.90  E-value=5.8e-23  Score=182.21  Aligned_cols=139  Identities=20%  Similarity=0.267  Sum_probs=113.5

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccccccccc
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHAN  115 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~~~~~~  115 (240)
                      .|+++++|+++||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|++.+++.
T Consensus         2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~   80 (302)
T TIGR01188         2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED   80 (302)
T ss_pred             eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence            45678899999999999999999999999999999999997 56789999999987532  2345679999999999999


Q ss_pred             ccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          116 LTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       116 ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|+.|++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        81 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  142 (302)
T TIGR01188        81 LTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQ  142 (302)
T ss_pred             CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcC
Confidence            99999988653322   122333345677788888888777777778899999999999999875

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.90  E-value=5.4e-23  Score=182.47  Aligned_cols=144  Identities=23%  Similarity=0.264  Sum_probs=116.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...  ...++.++|++|++
T Consensus         8 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~   86 (303)
T TIGR01288         8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-ISPDRGKITVLGEPVPSRARLARVAIGVVPQFD   86 (303)
T ss_pred             EeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECcccHHHHhhcEEEEeccc
Confidence            5788899988999999999999999999999999999999999997 56789999999986531  23456799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+|+.+++.+.....   ..........+..+++.+++.+.........|++++|++.+++++...
T Consensus        87 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  153 (303)
T TIGR01288        87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND  153 (303)
T ss_pred             cCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            9988999999987533221   122233344566677888887766667777899999999999999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5e-23  Score=187.37  Aligned_cols=144  Identities=22%  Similarity=0.247  Sum_probs=119.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      .|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus         7 ~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~   85 (369)
T PRK11000          7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYA   85 (369)
T ss_pred             EEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCCCCHhHCCEEEEeCCcc
Confidence            5788888888999999999999999999999999999999999997 56789999999987632 233567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        86 l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~  151 (369)
T PRK11000         86 LYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE  151 (369)
T ss_pred             cCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999998754321   123334455677788888888777777778899999999999999875

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.90  E-value=7.6e-23  Score=172.98  Aligned_cols=144  Identities=27%  Similarity=0.293  Sum_probs=114.3

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q  108 (240)
                      +|+.+.+++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|
T Consensus         4 ~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q   82 (220)
T cd03263           4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-LRPTSGTAYINGYSIRTDRKAARQSLGYCPQ   82 (220)
T ss_pred             EeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccchHHHhhhEEEecC
Confidence            467778876  7899999999999999999999999999999999997 56789999999987532  234567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++..++.+++.+.....   ........+.+.++++.+++.+.........+.++++++.+++++...
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (220)
T cd03263          83 FDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG  151 (220)
T ss_pred             cCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence            999888999999987653322   112223344566777777877666666677889999999999999875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.90  E-value=7.4e-23  Score=172.37  Aligned_cols=144  Identities=26%  Similarity=0.336  Sum_probs=114.1

Q ss_pred             CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      +|+.+.+ +++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...      ...++.++|
T Consensus         5 ~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   83 (214)
T TIGR02673         5 HNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGV   83 (214)
T ss_pred             EeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence            4677777 467899999999999999999999999999999999997 56789999999986531      124567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.+++.+.....   ........+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (214)
T TIGR02673        84 VFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNS  155 (214)
T ss_pred             EecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            999999888899999988753321   122233345567778888877665566667889999999999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.90  E-value=7.3e-23  Score=181.53  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=118.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.++++.+|+++||+|.+||++||+|||||||||||++|+|+ .+|++|+|.++|.+...  ...++.++|++|++
T Consensus         6 ~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~   84 (301)
T TIGR03522         6 SSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN   84 (301)
T ss_pred             EEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence            5778888889999999999999999999999999999999999997 56889999999986532  23457799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.|++.+.....   ........+.++++++.+++.+.........+.++++++.+++++...
T Consensus        85 ~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        85 PLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             CCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999988654332   122233345567788888888777777777899999999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.90  E-value=8.5e-23  Score=172.46  Aligned_cols=144  Identities=22%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEE
Q psy310           33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v  106 (240)
                      +|+++.++++    ++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+...  ...++.++|+
T Consensus         5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~   83 (218)
T cd03266           5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-LEPDAGFATVDGFDVVKEPAEARRRLGFV   83 (218)
T ss_pred             EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCCceEEECCEEcccCHHHHHhhEEEe
Confidence            5778888776    899999999999999999999999999999999997 56789999999976532  2345679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+++.|++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        84 ~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (218)
T cd03266          84 SDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD  154 (218)
T ss_pred             cCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence            99998888899999987643221   122333345667788888887766666677889999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.90  E-value=9.1e-23  Score=171.69  Aligned_cols=144  Identities=22%  Similarity=0.279  Sum_probs=115.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~   82 (213)
T cd03301           4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYA   82 (213)
T ss_pred             EeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCCcccceEEEEecChh
Confidence            4678888888999999999999999999999999999999999997 56789999999986532 122356999999998


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++..++.+++.+.....   ........+.+.++++.+++.+.....+...++++++++.+++++...
T Consensus        83 ~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  148 (213)
T cd03301          83 LYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVRE  148 (213)
T ss_pred             hccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence            888899999987653221   122333345567778888887766666777889999999999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.90  E-value=9.8e-23  Score=171.38  Aligned_cols=145  Identities=24%  Similarity=0.319  Sum_probs=115.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~  107 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...     ...++.++|++
T Consensus         4 ~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~   82 (213)
T cd03262           4 KNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVF   82 (213)
T ss_pred             EEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCccchhHHHHHhcceEEe
Confidence            4677888888999999999999999999999999999999999997 56789999999986521     23457799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.|++.+......  ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus        83 q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  153 (213)
T cd03262          83 QQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN  153 (213)
T ss_pred             cccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence            99998888999999876432111  122223344566777778877666666677889999999999999875

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.90  E-value=1.3e-22  Score=173.03  Aligned_cols=144  Identities=28%  Similarity=0.322  Sum_probs=115.5

Q ss_pred             CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310           33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~  102 (240)
                      +|+.+.++++    ++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..      ...++.
T Consensus         5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (233)
T cd03258           5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-ERPTSGSVLVDGTDLTLLSGKELRKARRR   83 (233)
T ss_pred             ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            5677788776    899999999999999999999999999999999997 56789999999987532      123567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++|++.+++.+|+.|++.+.....   ..........+.++++.+++.+.........++++++++.+++++...
T Consensus        84 i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  158 (233)
T cd03258          84 IGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANN  158 (233)
T ss_pred             eEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999988899999987653221   122333345567788888887766666777889999999999999865

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.90  E-value=1.4e-22  Score=170.58  Aligned_cols=144  Identities=24%  Similarity=0.307  Sum_probs=114.0

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      +|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..      ...++.++|
T Consensus         4 ~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   82 (214)
T cd03292           4 INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV   82 (214)
T ss_pred             EEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence            467777754 6899999999999999999999999999999999997 56789999999976531      124567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.+++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        83 v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (214)
T cd03292          83 VFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS  154 (214)
T ss_pred             EecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence            999999998899999987653321   112233344566777777877666666667889999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.2e-22  Score=183.30  Aligned_cols=144  Identities=24%  Similarity=0.254  Sum_probs=116.6

Q ss_pred             CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310           33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~  102 (240)
                      +|+.+.|+    .+++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...      ...++.
T Consensus         5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~   83 (343)
T PRK11153          5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-ERPTSGRVLVDGQDLTALSEKELRKARRQ   83 (343)
T ss_pred             EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            46777776    46899999999999999999999999999999999997 56789999999987532      123567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++|++.+++.+++.+++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        84 ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~  158 (343)
T PRK11153         84 IGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN  158 (343)
T ss_pred             EEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999999988999999998754322   123333445667788888887776677777899999999999999875

>PRK10908 cell division protein FtsE; Provisional

Probab=99.90  E-value=1.5e-22  Score=171.67  Aligned_cols=144  Identities=24%  Similarity=0.304  Sum_probs=113.9

Q ss_pred             CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      +|+.+.+ +++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..      ...++.++|
T Consensus         5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   83 (222)
T PRK10908          5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-ERPSAGKIWFSGHDITRLKNREVPFLRRQIGM   83 (222)
T ss_pred             EeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence            4677777 667899999999999999999999999999999999997 56789999999976531      124567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.+++.+.....   ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  155 (222)
T PRK10908         84 IFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK  155 (222)
T ss_pred             EecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence            999998888899999987653221   122233344566677777877666666677889999999999999875

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=1.5e-22  Score=170.06  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=112.6

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .|+.+.+++  +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus         3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   81 (211)
T cd03225           3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-LGPTSGEVLVDGKDLTKLSLKELRRKVGLVF   81 (211)
T ss_pred             eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence            467788877  7899999999999999999999999999999999997 5678999999997653   223456799999


Q ss_pred             cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++. .+..+++.+++.+.....   ..........+.++++.+++.+.........|++++|++.+++++...
T Consensus        82 q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  152 (211)
T cd03225          82 QNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD  152 (211)
T ss_pred             cChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9975 356789999987643221   122223344566777878877665666677899999999999999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.5e-22  Score=172.85  Aligned_cols=145  Identities=26%  Similarity=0.299  Sum_probs=113.8

Q ss_pred             CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hh-h
Q psy310           32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QF-R  100 (240)
Q Consensus        32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~-~  100 (240)
                      -+|+.+.++.    +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...   .   .. +
T Consensus         8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~   86 (233)
T PRK11629          8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-DTPTSGDVIFNGQPMSKLSSAAKAELRN   86 (233)
T ss_pred             EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCCHHHHHHHHh
Confidence            3567777754    5799999999999999999999999999999999997 56789999999987532   1   12 2


Q ss_pred             hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++|++|++.+++.+++.+++.+.....   .......++.+.++++.+++.+.........|+++++++.+++++...
T Consensus        87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         87 QKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             ccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            56899999999888899999988753221   122233345567788888887666666667889999999999999875

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.89  E-value=1.4e-22  Score=172.65  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=114.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q  108 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...   .. .+..++|++|
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (232)
T cd03218           4 ENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQ   82 (232)
T ss_pred             EEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccCCHhHHHhccEEEecC
Confidence            4778888888999999999999999999999999999999999997 56789999999976532   11 2346899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+++.+.....   ..........+.++++.+++.+.........|+++++++.+++++...
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  151 (232)
T cd03218          83 EASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN  151 (232)
T ss_pred             CccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999888899999987643221   112223344566777777877766666677889999999999999875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.89  E-value=1.6e-22  Score=172.73  Aligned_cols=147  Identities=24%  Similarity=0.274  Sum_probs=114.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...   .. .+..++|++|
T Consensus         4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   82 (236)
T cd03219           4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQ   82 (236)
T ss_pred             eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCceEEECCEECCCCCHHHHHhcCEEEEec
Confidence            5778888888899999999999999999999999999999999997 56789999999976532   11 2346899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDL-------TKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|+.+++.+..........       ......+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  161 (236)
T cd03219          83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD  161 (236)
T ss_pred             ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999998765432111100       1223344567777888887666666677889999999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=6.2e-23  Score=173.48  Aligned_cols=143  Identities=21%  Similarity=0.310  Sum_probs=124.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      -++.+.||++.+++++||+|++|+++|++|+|||||||++|+|.|+ .+|++|+|.|+|.++.. ..+..+||+|.+..+
T Consensus         6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-le~~~G~I~~~g~~~~~-~~~~rIGyLPEERGL   83 (300)
T COG4152           6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-LEPTEGEITWNGGPLSQ-EIKNRIGYLPEERGL   83 (300)
T ss_pred             ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-CCccCceEEEcCcchhh-hhhhhcccChhhhcc
Confidence            4788999999999999999999999999999999999999999997 56899999999988754 356789999999999


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+||.+.+.+-..++   ++++...++.++.+++++++..+....+...+.+.+|++....++.+.
T Consensus        84 y~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHe  148 (300)
T COG4152          84 YPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHE  148 (300)
T ss_pred             CccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence            99999999998765553   566777888999999999988877777777888888888887777664

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=1e-22  Score=170.57  Aligned_cols=140  Identities=26%  Similarity=0.295  Sum_probs=110.4

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.+++ +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......++.++|++|++.
T Consensus         3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~   81 (205)
T cd03226           3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-IKESSGSILLNGKPIKAKERRKSIGYVMQDVD   81 (205)
T ss_pred             ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence            467788877 8899999999999999999999999999999999997 56889999999987543344567999999974


Q ss_pred             -ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 -LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 -~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                       .+...++.|++.+..... .    .  ....+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        82 ~~~~~~tv~e~l~~~~~~~-~----~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  144 (205)
T cd03226          82 YQLFTDSVREELLLGLKEL-D----A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSG  144 (205)
T ss_pred             hhhhhccHHHHHhhhhhhc-C----c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence             234679999987643211 1    1  123456677777877666666677889999999999999875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.89  E-value=2.1e-22  Score=171.16  Aligned_cols=145  Identities=24%  Similarity=0.317  Sum_probs=112.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC----CCCccEEEECCccCC-----chhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT----SGTEGSITINGHERN-----LSQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~----~~~~G~V~v~g~~~~-----~~~~~~~~  103 (240)
                      +|+.+.++.+++|+++||+|.+||+++|+||||||||||+++|+|++.    +|.+|+|.++|.+..     ....++.+
T Consensus         4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   83 (227)
T cd03260           4 RDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV   83 (227)
T ss_pred             EEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhE
Confidence            578888888899999999999999999999999999999999999841    678999999998653     12345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc--cCCCCCchhhHHHHHHHHhcc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF--LSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++|++.++ .+|+.|++.+..... . ........+.+.++++.+++.+.....  ....|++++|++.+++++...
T Consensus        84 ~~~~q~~~~~-~~tv~e~l~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          84 GMVFQKPNPF-PGSIYDNVAYGLRLH-G-IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             EEEecCchhc-cccHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence            9999999887 789999987653321 1 111122344566777777776654444  367889999999999999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.2e-22  Score=174.49  Aligned_cols=142  Identities=24%  Similarity=0.353  Sum_probs=113.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...  ....++|++|++.+
T Consensus         5 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~   81 (255)
T PRK11248          5 SHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-VPYQHGSITLDGKPVEG--PGAERGVVFQNEGL   81 (255)
T ss_pred             EEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCC--CCCcEEEEeCCCcc
Confidence            4677888888899999999999999999999999999999999997 56789999999987532  23458999999988


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        82 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~  146 (255)
T PRK11248         82 LPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAAN  146 (255)
T ss_pred             CCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            88899999987643221   122233344567788888887665666677889999999999999875

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=9.7e-23  Score=171.14  Aligned_cols=143  Identities=22%  Similarity=0.301  Sum_probs=111.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+++.||..++|++|||+|++||+++|+|+||+||||||++|+|+ .++.+|+|.++|.++..    ...+.-++||||
T Consensus         7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe   85 (237)
T COG0410           7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-VRPRSGRIIFDGEDITGLPPHERARLGIAYVPE   85 (237)
T ss_pred             EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence            5789999999999999999999999999999999999999999997 66779999999998743    234567899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ...+++.+||+||+.........    +......++.+++.+ .+.+.....-...|++++|-+.++++++.+
T Consensus        86 gR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          86 GRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             cccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            99999999999999876443211    111111144444443 234444444556788888999999999876

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.89  E-value=2.1e-22  Score=172.58  Aligned_cols=147  Identities=24%  Similarity=0.299  Sum_probs=114.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      .|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus         6 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   84 (239)
T cd03296           6 RNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-ERPDSGTILFGGEDATDVPVQERNVGFVFQHYA   84 (239)
T ss_pred             EeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCCccccceEEEecCCc
Confidence            5778888888999999999999999999999999999999999997 56789999999976532 122456899999999


Q ss_pred             ccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+++.+....... .........+.+..+++.+++.+.........|++++|++.+++++...
T Consensus        85 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  154 (239)
T cd03296          85 LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE  154 (239)
T ss_pred             ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            88889999998765322110 0012222344566778888887666666677889999999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.89  E-value=2.9e-22  Score=169.55  Aligned_cols=144  Identities=28%  Similarity=0.342  Sum_probs=112.7

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hhh-h
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QFR-K  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~~-~  101 (240)
                      +|+.+.+++    +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...   .   ..+ +
T Consensus         5 ~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (221)
T TIGR02211         5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-DNPTSGEVLFNGQSLSKLSSNERAKLRNK   83 (221)
T ss_pred             EeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEhhhcCHhHHHHHHHh
Confidence            467777754    5799999999999999999999999999999999997 56789999999976531   1   122 5


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++|++|++.+++.+++.|++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        84 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        84 KLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             cEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            6899999998888899999987653221   112222344566778888887666666677889999999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.89  E-value=3.2e-22  Score=172.43  Aligned_cols=146  Identities=23%  Similarity=0.289  Sum_probs=115.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----------hhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----------SQFR  100 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----------~~~~  100 (240)
                      -+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...           ...+
T Consensus         6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK11264          6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-EQPEAGTIRVGDITIDTARSLSQQKGLIRQLR   84 (250)
T ss_pred             EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccccccchhhHHHHhh
Confidence            35788888888999999999999999999999999999999999997 56789999999976531           1235


Q ss_pred             hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++|++|++.+++..++.|++.+......  ........+.+.++++.+++...........|+++++++.+++++...
T Consensus        85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~  162 (250)
T PRK11264         85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR  162 (250)
T ss_pred             hhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence            678999999988888999999876432111  122233345566777777877655666677889999999999999875

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.89  E-value=3e-22  Score=171.98  Aligned_cols=144  Identities=22%  Similarity=0.307  Sum_probs=114.3

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q  108 (240)
                      +|+.+.+++ +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   ...+..++|++|
T Consensus         4 ~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   82 (242)
T cd03295           4 ENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ   82 (242)
T ss_pred             EEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence            467888887 7899999999999999999999999999999999997 56789999999976531   234567899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|+.|++.+.....   ........+.+.++++.+++.+  .........|++++|++.+++++...
T Consensus        83 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~  153 (242)
T cd03295          83 QIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD  153 (242)
T ss_pred             CccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence            999988899999987653321   1222333445667778777764  45555667889999999999999875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.89  E-value=2.4e-22  Score=172.05  Aligned_cols=147  Identities=29%  Similarity=0.299  Sum_probs=113.3

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      .|+.+.+++ +++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+...      ...++.++|
T Consensus         4 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   82 (241)
T cd03256           4 ENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-VEPTSGSVLIDGTDINKLKGKALRQLRRQIGM   82 (241)
T ss_pred             eeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence            467888877 7899999999999999999999999999999999997 56789999999976531      234567999


Q ss_pred             EcccccccccccHHHHHHHHHHHh---cC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALK---LG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~---~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.+++.+.....   ..  .........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  162 (241)
T cd03256          83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ  162 (241)
T ss_pred             EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999888899999987542110   00  0011122234566677777877666666677889999999999999875

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.89  E-value=1.8e-22  Score=170.07  Aligned_cols=145  Identities=27%  Similarity=0.313  Sum_probs=111.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..  ..++.++|++|++.+
T Consensus         3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~   79 (213)
T cd03235           3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-LKPTSGSIRVFGKPLE--KERKRIGYVPQRRSI   79 (213)
T ss_pred             ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCccHH--HHHhheEEecccccc
Confidence            5778888888899999999999999999999999999999999997 5678999999997653  346679999999876


Q ss_pred             c--ccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 H--ANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~--~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .  ..+|+.|++.+........ ........+.++.+++.+++.+.........|+++++++.+++++...
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  150 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD  150 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence            3  2379999987642211000 001122344567778888887666666777889999999999999865

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.89  E-value=2.8e-22  Score=168.28  Aligned_cols=140  Identities=20%  Similarity=0.306  Sum_probs=112.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   82 (208)
T cd03268           4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-IKPDSGEITFDGKSYQKNIEALRRIGALIEAPG   82 (208)
T ss_pred             EEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCCcccchHHHHhhEEEecCCCc
Confidence            4678888888999999999999999999999999999999999997 56789999999986532 234567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.....   ...    .+.+..+++.+++.+.........|+++++++.+++++...
T Consensus        83 ~~~~~tv~e~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  144 (208)
T cd03268          83 FYPNLTARENLRLLARLL---GIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN  144 (208)
T ss_pred             cCccCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            888999999987653221   111    23455667777777666666667889999999999999875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.2e-22  Score=172.28  Aligned_cols=169  Identities=22%  Similarity=0.267  Sum_probs=136.7

Q ss_pred             CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC----chhhhhhceEEc
Q psy310           33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN----LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~----~~~~~~~~g~v~  107 (240)
                      .|+.+.+.+. ++|+++||+|++||+++|+|+||||||||+++|+|+ ..|.+|.|.++|.+..    ...+++.+||||
T Consensus         7 ~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf   85 (235)
T COG1122           7 ENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVF   85 (235)
T ss_pred             EEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-CcCCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence            4566777665 999999999999999999999999999999999998 5678999999998754    567889999999


Q ss_pred             ccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccccccee
Q psy310          108 QDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTI  186 (240)
Q Consensus       108 Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  186 (240)
                      |+|.. +-..||.+.++|...-   ..++.++.++++..++..+++.+...+.+...|++++|++.+|..+...      
T Consensus        86 Qnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~------  156 (235)
T COG1122          86 QNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG------  156 (235)
T ss_pred             ECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC------
Confidence            99853 3456888888876432   2345556778888899999999888888888999999999999988775      


Q ss_pred             eccceeEEeCCcEEEEEcCCCC-----CHHHHHHHHhCCcc
Q psy310          187 LKSVSGRLRSGELTAIMGPSGA-----GKSTLLNILTGYKI  222 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGs-----GKSTLlk~l~G~~~  222 (240)
                                 ..+-|+.++.|     |+..+++.|.-+..
T Consensus       157 -----------P~iliLDEPta~LD~~~~~~l~~~l~~L~~  186 (235)
T COG1122         157 -----------PEILLLDEPTAGLDPKGRRELLELLKKLKE  186 (235)
T ss_pred             -----------CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                       45777888877     45556777766533

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.89  E-value=4.4e-22  Score=173.77  Aligned_cols=146  Identities=23%  Similarity=0.282  Sum_probs=115.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++..      ...++.++|
T Consensus        10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   88 (269)
T PRK11831         10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-IAPDHGEILFDGENIPAMSRSRLYTVRKRMSM   88 (269)
T ss_pred             EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence            46788888888999999999999999999999999999999999997 56789999999976531      123457899


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+|+.+++.+..... . ..........+..+++.+++.+.........|+++++++.+++++...
T Consensus        89 v~q~~~~~~~~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~  161 (269)
T PRK11831         89 LFQSGALFTDMNVFDNVAYPLREH-T-QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE  161 (269)
T ss_pred             EecccccCCCCCHHHHHHHHHHHc-c-CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999888899999987643211 1 122233344566677888887766666777899999999999999875

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=4.2e-22  Score=170.75  Aligned_cols=145  Identities=23%  Similarity=0.285  Sum_probs=115.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~  107 (240)
                      .|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+...     ...++.++|++
T Consensus         5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~   83 (240)
T PRK09493          5 KNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVF   83 (240)
T ss_pred             EeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCChhHHHHhhceEEEe
Confidence            4677888888899999999999999999999999999999999997 56789999999987532     23356799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.+++.+......  ........+.+.++++.+++.+.........++++++++.+++++...
T Consensus        84 q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  154 (240)
T PRK09493         84 QQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK  154 (240)
T ss_pred             cccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence            99998888999999876432111  122333345567778888887666666677889999999999999865

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.89  E-value=4e-22  Score=170.56  Aligned_cols=144  Identities=26%  Similarity=0.371  Sum_probs=113.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...  ....+.++|++|++
T Consensus         5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~   83 (236)
T TIGR03864         5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-YVAQEGQISVAGHDLRRAPRAALARLGVVFQQP   83 (236)
T ss_pred             EeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence            4677788888899999999999999999999999999999999997 56789999999976531  12235789999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++..+++.+++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        84 ~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        84 TLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             CCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            8888899999987643221   122223344566677777877666666677889999999999999875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.89  E-value=3.9e-22  Score=167.72  Aligned_cols=143  Identities=26%  Similarity=0.343  Sum_probs=114.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+++.++++++|+++||+|++| +++|+||||||||||+++|+|+ .+|++|+|.++|.+...  ...++.++|++|++
T Consensus         4 ~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   81 (211)
T cd03264           4 ENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF   81 (211)
T ss_pred             EEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCCccccchHHHHhheEEecCCC
Confidence            46778888889999999999999 9999999999999999999997 56789999999976532  23467799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.+++.+.....   ........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  148 (211)
T cd03264          82 GVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD  148 (211)
T ss_pred             cccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence            9888899999987654322   122223344566777878877666666677889999999999999875

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.89  E-value=2.4e-22  Score=184.41  Aligned_cols=146  Identities=23%  Similarity=0.336  Sum_probs=119.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      +|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|.+|+|.++|.+..   ...+++.++||+|+
T Consensus         7 ~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~   85 (402)
T PRK09536          7 SDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-LTPTAGTVLVAGDDVEALSARAASRRVASVPQD   85 (402)
T ss_pred             eeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-CCCCCcEEEECCEEcCcCCHHHHhcceEEEccC
Confidence            5788999999999999999999999999999999999999999997 5678999999998753   23456789999999


Q ss_pred             ccccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++..+++.|++.+....+..  .... ....+.++++++.+++.+.........|++++|++.+++++.+.
T Consensus        86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~  157 (402)
T PRK09536         86 TSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA  157 (402)
T ss_pred             CCCCCCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9998899999998764321111  0112 22345677788888888777777778899999999999999875

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.89  E-value=2.2e-22  Score=172.65  Aligned_cols=147  Identities=25%  Similarity=0.243  Sum_probs=113.1

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceE
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~  105 (240)
                      .|+.+.++ ++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...      ...++.++|
T Consensus         5 ~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   83 (243)
T TIGR02315         5 ENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-VEPSSGSILLEGTDITKLRGKKLRKLRRRIGM   83 (243)
T ss_pred             EeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence            46777887 77899999999999999999999999999999999997 56789999999976531      124567999


Q ss_pred             EcccccccccccHHHHHHHHHHHh---cC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALK---LG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~---~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+++.+++.+.....   ..  .........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  163 (243)
T TIGR02315        84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ  163 (243)
T ss_pred             EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999888899999986532100   00  0011122234566677778877666666677889999999999999875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.88  E-value=4.5e-22  Score=173.75  Aligned_cols=146  Identities=23%  Similarity=0.262  Sum_probs=117.0

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhhhc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRKLS  103 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~~~  103 (240)
                      ...|+.+.++.+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   ..    .++.+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-IEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            445888999999999999999999999999999999999999999997 56789999999976531   11    13568


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++|++.+++.+++.+++.+.....   ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~  178 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD  178 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999999888899999988653221   112233344566778888887766667777899999999999999875

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.88  E-value=5.4e-22  Score=164.39  Aligned_cols=137  Identities=23%  Similarity=0.248  Sum_probs=105.8

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEccccc-cc
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIMQDNQ-LH  113 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~Q~~~-~~  113 (240)
                      +++.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...     ...++.++|++|++. ..
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL   81 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence            456799999999999999999999999999999999997 56789999999977531     133567899999973 23


Q ss_pred             ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ...++.|++.+.....   ........+.+.++++.+++.+.........++++++++.++++++..
T Consensus        82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  145 (190)
T TIGR01166        82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMR  145 (190)
T ss_pred             ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            3579999987653221   122233344566777777877666666677889999999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.7e-22  Score=174.71  Aligned_cols=144  Identities=22%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      +|+.+.|+.     +++|++|||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+...     ...++.
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (287)
T PRK13637          6 ENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-LKPTSGKIIIDGVDITDKKVKLSDIRKK   84 (287)
T ss_pred             EEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCccEEEECCEECCCcCccHHHHhhc
Confidence            456677653     4799999999999999999999999999999999997 56789999999987632     245678


Q ss_pred             ceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          103 SCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       103 ~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      ++|++|++. .+...++.+++.+.....   ........+.+.++++.+++.  +.........|++++|++.++++++.
T Consensus        85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         85 VGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             eEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            999999974 233579999998653321   233444455677788888875  44555667788999999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       162 ~  162 (287)
T PRK13637        162 E  162 (287)
T ss_pred             C
Confidence            5

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.8e-22  Score=170.02  Aligned_cols=145  Identities=23%  Similarity=0.354  Sum_probs=114.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...+..++|++|
T Consensus         7 ~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   85 (241)
T PRK10895          7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQ   85 (241)
T ss_pred             eCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHHhCeEEecc
Confidence            5778888888999999999999999999999999999999999997 56789999999976532    113467999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.|++.+.....  ...........+.++++.+++.+.........++++++++.+++++...
T Consensus        86 ~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  155 (241)
T PRK10895         86 EASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN  155 (241)
T ss_pred             CCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence            998888899999987642211  1122233345566777777777666666667889999999999999875

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.88  E-value=4.5e-22  Score=168.35  Aligned_cols=142  Identities=25%  Similarity=0.338  Sum_probs=107.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   .. .++.++|++|
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (222)
T cd03224           4 ENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-LPPRSGSIRFDGRDITGLPPHERARAGIGYVPE   82 (222)
T ss_pred             eeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcCCCCHHHHHhcCeEEecc
Confidence            4778888888999999999999999999999999999999999997 56789999999976532   11 2456999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|+.+++.+..... .   . ......+..+++.+ .+.+.........++++++++.+++++...
T Consensus        83 ~~~~~~~~t~~~~l~~~~~~~-~---~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  150 (222)
T cd03224          83 GRRIFPELTVEENLLLGAYAR-R---R-AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR  150 (222)
T ss_pred             ccccCCCCcHHHHHHHHhhhc-C---c-hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence            999998899999987653221 1   1 11223334444444 344444455566788999999999999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.88  E-value=6e-22  Score=168.45  Aligned_cols=148  Identities=30%  Similarity=0.429  Sum_probs=110.9

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEE
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v  106 (240)
                      .|+..++..    +++|+++||+|++||+++|+||||||||||+++|+|++.+  +.+|+|.++|.+......++.++|+
T Consensus         7 ~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~   86 (226)
T cd03234           7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYV   86 (226)
T ss_pred             ecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEe
Confidence            345555543    6899999999999999999999999999999999997432  7899999999876544456779999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-hhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-LFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+|+.|++.+..................+.. +++.+++.+.........+.++++++.+++++...
T Consensus        87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            999999999999999987543221111111222223333 66666666655556677888999999999999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.88  E-value=8.3e-22  Score=167.61  Aligned_cols=144  Identities=24%  Similarity=0.324  Sum_probs=112.5

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch---h---h-hh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS---Q---F-RK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~---~---~-~~  101 (240)
                      .|+.+.++.    .++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+....   .   . ++
T Consensus        10 ~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   88 (228)
T PRK10584         10 HHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-DDGSSGEVSLVGQPLHQMDEEARAKLRAK   88 (228)
T ss_pred             eeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence            466777764    3699999999999999999999999999999999997 567899999999765321   1   1 24


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++|++|++.+++.+++.+++.+.....   ........+.+.+++..+++.+.....+...|+++++++.+++++...
T Consensus        89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~  164 (228)
T PRK10584         89 HVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR  164 (228)
T ss_pred             eEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            6899999998888899999987643221   112233345567778888887766666677889999999999999875

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=8.9e-22  Score=168.94  Aligned_cols=145  Identities=25%  Similarity=0.310  Sum_probs=113.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---------chhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---------LSQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---------~~~~~~~~  103 (240)
                      .|+.+.++++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..         ....++.+
T Consensus         6 ~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i   84 (242)
T PRK11124          6 NGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV   84 (242)
T ss_pred             EeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEecccccccchhhHHHHHhhe
Confidence            4677888888999999999999999999999999999999999997 5678999999998642         12335678


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++|++.+++.+++.|++........  ..........+..+++.+++.+.........++++++++.+++++...
T Consensus        85 ~~~~q~~~~~~~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~  159 (242)
T PRK11124         85 GMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME  159 (242)
T ss_pred             EEEecCccccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999888999999864321111  112223344566777777877666666677889999999999999875

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.88  E-value=1.1e-21  Score=169.46  Aligned_cols=145  Identities=25%  Similarity=0.291  Sum_probs=115.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----------------
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----------------   96 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----------------   96 (240)
                      +|+.+.++.+++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..                
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~   82 (252)
T TIGR03005         4 SDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL   82 (252)
T ss_pred             EEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccccccccchhHH
Confidence            5778888888999999999999999999999999999999999997 56789999999976521                


Q ss_pred             hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310           97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus        97 ~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      ...++.++|++|++.+++..++.+++.+......  ........+.+.++++.+++.+.........++++++++.++++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara  160 (252)
T TIGR03005        83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA  160 (252)
T ss_pred             HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence            1345679999999999888999999876432111  12233334456677788887766666667788899999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +...
T Consensus       161 l~~~  164 (252)
T TIGR03005       161 LAMR  164 (252)
T ss_pred             HHcC
Confidence            9875

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.88  E-value=1.4e-21  Score=169.40  Aligned_cols=146  Identities=25%  Similarity=0.305  Sum_probs=115.7

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------------   96 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------------   96 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+...               
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   86 (257)
T PRK10619          8 VIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ   86 (257)
T ss_pred             EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcccccccccccccccchH
Confidence            46788888888999999999999999999999999999999999997 56789999999976521               


Q ss_pred             -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHHH
Q psy310           97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLLA  174 (240)
Q Consensus        97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  174 (240)
                       ...++.++|++|++.+++.+++.|++.+......  ........+.+.++++.+++.+.. .......++++++++.++
T Consensus        87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la  164 (257)
T PRK10619         87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  164 (257)
T ss_pred             HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence             2335679999999999888999999876432111  122333455667788888886653 555677889999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       165 ral~~~  170 (257)
T PRK10619        165 RALAME  170 (257)
T ss_pred             HHHhcC
Confidence            999875

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.88  E-value=1.2e-21  Score=168.81  Aligned_cols=144  Identities=22%  Similarity=0.258  Sum_probs=112.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-----ccEEEECCccCCc-----hhhhhh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-----EGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-----~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      +|+++.++++.+|+++||+|++||+++|+|+|||||||||++|+|+ .+|.     +|+|.++|.+...     ...++.
T Consensus         5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   83 (247)
T TIGR00972         5 ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRR   83 (247)
T ss_pred             EEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CCCCcCCCCceEEEECCEEccccccchHHHHhh
Confidence            4678888888899999999999999999999999999999999998 4455     9999999987531     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+.....  .........+.+..+++.+++.    +.........|++++|++.+++++.
T Consensus        84 i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  160 (247)
T TIGR00972        84 VGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA  160 (247)
T ss_pred             eEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999998887 99999988653321  1112233345566777777775    4455556678899999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       161 ~~  162 (247)
T TIGR00972       161 VE  162 (247)
T ss_pred             cC
Confidence            75

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.1e-21  Score=171.86  Aligned_cols=144  Identities=22%  Similarity=0.162  Sum_probs=113.4

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q  108 (240)
                      .|+.+.++ ..++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+...   ...++.++|++|
T Consensus         8 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   86 (274)
T PRK13647          8 EDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ   86 (274)
T ss_pred             EEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence            56777775 56799999999999999999999999999999999997 56789999999987532   234567999999


Q ss_pred             ccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++. .+...++.+++.+.....   ........+.+..+++.+++.+.....+...|+++++++.+++++...
T Consensus        87 ~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~  156 (274)
T PRK13647         87 DPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD  156 (274)
T ss_pred             ChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            973 345679999997653221   223333345567788888887766777778899999999999999875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.5e-21  Score=169.28  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=112.5

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|++.+    |++|+|.++|.+..     ....++.
T Consensus         7 i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~   86 (258)
T PRK14241          7 VKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRT   86 (258)
T ss_pred             EeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcc
Confidence            36788888888999999999999999999999999999999999998543    36999999997652     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++.+++.+++.+.....  .........+.+.++++.+++.    +.........++++++++.+++++.
T Consensus        87 i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (258)
T PRK14241         87 IGMVFQRPNPFPTMSIRDNVVAGLKLN--GVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA  164 (258)
T ss_pred             eEEEccccccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999999888899999987653221  1112223344556666666652    3344455668889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       165 ~~  166 (258)
T PRK14241        165 VE  166 (258)
T ss_pred             cC
Confidence            75

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.88  E-value=1.4e-21  Score=165.93  Aligned_cols=146  Identities=26%  Similarity=0.265  Sum_probs=108.1

Q ss_pred             CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310           33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~  102 (240)
                      +|+.+.++++    ++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...      ...++.
T Consensus         5 ~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (228)
T cd03257           5 KNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL-LKPTSGSIIFDGKDLLKLSRRLRKIRRKE   83 (228)
T ss_pred             EeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEccccchhhHHHhhcc
Confidence            4677777665    799999999999999999999999999999999997 56789999999986532      234567


Q ss_pred             ceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          103 SCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       103 ~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      ++|++|++  .+.+.+++.+++.+...... ...........+.+++..+++. ..........|++++|++.+++++..
T Consensus        84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~  162 (228)
T cd03257          84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL  162 (228)
T ss_pred             EEEEecCchhhcCCcCCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhc
Confidence            99999998  45667899999876432211 1111111122234566667764 34455556688899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       163 ~  163 (228)
T cd03257         163 N  163 (228)
T ss_pred             C
Confidence            5

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.2e-21  Score=171.97  Aligned_cols=144  Identities=23%  Similarity=0.261  Sum_probs=114.8

Q ss_pred             CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .|+.+.++.   +.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|+
T Consensus         8 ~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v   86 (279)
T PRK13650          8 KNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-LEAESGQIIIDGDLLTEENVWDIRHKIGMV   86 (279)
T ss_pred             EeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHHhhceEE
Confidence            466777753   4699999999999999999999999999999999997 5678999999998753   22355789999


Q ss_pred             ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++. ++...++.+++.+.....   ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        87 ~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~  158 (279)
T PRK13650         87 FQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR  158 (279)
T ss_pred             EcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            99984 566789999998653221   233344455677788888888777777777889999999999999875

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.88  E-value=1.1e-21  Score=164.37  Aligned_cols=141  Identities=23%  Similarity=0.329  Sum_probs=113.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+++.++.+++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+...  ...++.++|++|++
T Consensus         5 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~   83 (204)
T PRK13538          5 RNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQP   83 (204)
T ss_pred             EEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEcccchHHhhhheEEeCCcc
Confidence            4678888888999999999999999999999999999999999997 56789999999976531  23456789999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.|++.+.....  ..    ...+.++++++.+++.+.........++++++++.+++++...
T Consensus        84 ~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         84 GIKTELTALENLRFYQRLH--GP----GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             ccCcCCcHHHHHHHHHHhc--Cc----cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            8888899999987653221  11    1134456677778877666666677889999999999999875

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.88  E-value=7.8e-22  Score=171.21  Aligned_cols=142  Identities=30%  Similarity=0.385  Sum_probs=112.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      .|+.+.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++|+
T Consensus         6 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (258)
T PRK13548          6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-LSPDSGEVRLNGRPLADWSPAELARRRAVLPQH   84 (258)
T ss_pred             EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence            4678888888999999999999999999999999999999999997 5678999999997642   12334678999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      +.++..+++.+++.+.....   ..........+..+++.+++.+.........|++++|++.+++++.
T Consensus        85 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~  150 (258)
T PRK13548         85 SSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA  150 (258)
T ss_pred             CcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            98878889999987643211   1111222345667777778777666677778899999999999888

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.88  E-value=7.3e-22  Score=165.22  Aligned_cols=138  Identities=23%  Similarity=0.341  Sum_probs=110.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+++.++++.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+...  ..+++.++|++|++
T Consensus         4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (201)
T cd03231           4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-SPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP   82 (201)
T ss_pred             EEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEecccccHHhhhheEEecccc
Confidence            5678888888999999999999999999999999999999999997 56789999999977532  23456799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.+++.+...     ..    ..+.++++++.+++.+.........++++++++.+++++...
T Consensus        83 ~~~~~~tv~e~l~~~~~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  143 (201)
T cd03231          83 GIKTTLSVLENLRFWHA-----DH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSG  143 (201)
T ss_pred             ccCCCcCHHHHHHhhcc-----cc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            88888999999875321     10    123455666777776655555667888999999999999875

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.88  E-value=8.1e-22  Score=166.72  Aligned_cols=142  Identities=23%  Similarity=0.264  Sum_probs=114.2

Q ss_pred             CCceecCCCce----eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhce
Q psy310           33 TNNNCEPNEKT----ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~~~~~----~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g  104 (240)
                      .|+++.|+.+.    ++++|||+|.+||++||+|+||||||||+|+|+|+ ..|.+|+|.++|......    .+++.+.
T Consensus         7 ~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ   85 (252)
T COG1124           7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-EKPSSGSILLDGKPLAPKKRAKAFYRPVQ   85 (252)
T ss_pred             eceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCceEEECCcccCccccchhhcccee
Confidence            57788888877    99999999999999999999999999999999997 778999999999765432    3567889


Q ss_pred             EEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          105 YIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       105 ~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|||||.  +.|..++++.+..+...   ..+++.  ++.+.++++.+++... ..+++...++++.||+.+++|+..+
T Consensus        86 mVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~  159 (252)
T COG1124          86 MVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE  159 (252)
T ss_pred             EEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence            9999985  56778888877755332   223333  3337888888887654 5667777899999999999999765

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=167.99  Aligned_cols=147  Identities=20%  Similarity=0.237  Sum_probs=111.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC---chhhhhhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|++.+    |++|+|.++|.++.   ....++.++|
T Consensus         7 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~   86 (250)
T PRK14247          7 RDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM   86 (250)
T ss_pred             EeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence            5778888888999999999999999999999999999999999998543    46999999998653   2234567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.++..+|+.|++.+...... .........+.+.++++.+++.+    .........|+++++++.+++++...
T Consensus        87 v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  164 (250)
T PRK14247         87 VFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ  164 (250)
T ss_pred             EeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9999988888999999986532211 00122233445566777766532    33445566788999999999999875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.87  E-value=1.7e-21  Score=167.15  Aligned_cols=147  Identities=21%  Similarity=0.219  Sum_probs=114.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+...   . ..++.++|++|
T Consensus         6 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   84 (242)
T TIGR03411         6 EGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQ   84 (242)
T ss_pred             EeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCeecCCCCHHHHHhcCeeEecc
Confidence            4778888888899999999999999999999999999999999997 56789999999976532   1 12346999999


Q ss_pred             cccccccccHHHHHHHHHHHhcC--C---CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLG--K---DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~--~---~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+++.+.......  .   ..........+..+++.+++.+.........|+++++++.+++++...
T Consensus        85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~  161 (242)
T TIGR03411        85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD  161 (242)
T ss_pred             ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999998764321100  0   011122344567778888877666666677889999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=170.59  Aligned_cols=145  Identities=26%  Similarity=0.285  Sum_probs=114.8

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEE
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v  106 (240)
                      -+|+.+.++  ++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...   ..+++.++|+
T Consensus        10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v   88 (271)
T PRK13632         10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL-LKPQSGEIKIDGITISKENLKEIRKKIGII   88 (271)
T ss_pred             EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence            457777774  56899999999999999999999999999999999997 56789999999987532   2356679999


Q ss_pred             ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++. .+..+|+.+++.+.....   ..........+.++++.+++.+.........|+++++++.+++++...
T Consensus        89 ~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  160 (271)
T PRK13632         89 FQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN  160 (271)
T ss_pred             EeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            99974 566789999987643221   122333345667788888887776777778889999999999999875

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=1.4e-21  Score=163.41  Aligned_cols=139  Identities=19%  Similarity=0.255  Sum_probs=110.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~Q~~  110 (240)
                      +|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..  ...+++.++|++|++
T Consensus         5 ~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~   83 (200)
T PRK13540          5 IELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRS   83 (200)
T ss_pred             EEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence            5788888888999999999999999999999999999999999997 5678999999998653  123456799999998


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++..++.+++.+....  ..  .    ...+.++++.+++.+.........++++++++.+++++...
T Consensus        84 ~~~~~~tv~~~~~~~~~~--~~--~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  145 (200)
T PRK13540         84 GINPYLTLRENCLYDIHF--SP--G----AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK  145 (200)
T ss_pred             ccCcCCCHHHHHHHHHhc--Cc--c----hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            888889999998764311  11  1    12455666666665544455556788999999999999875

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.8e-21  Score=168.12  Aligned_cols=147  Identities=20%  Similarity=0.247  Sum_probs=109.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~~  103 (240)
                      .|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|++.+    +++|+|.++|.++.     ....++.+
T Consensus         8 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   87 (253)
T PRK14267          8 VNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV   87 (253)
T ss_pred             EeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence            5778888888999999999999999999999999999999999998543    25999999998653     12345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++.+++.+++.+..... ..........+.+..+++.+++.    +.........|+++++++.+++++..
T Consensus        88 ~~~~q~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  166 (253)
T PRK14267         88 GMVFQYPNPFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM  166 (253)
T ss_pred             eEEecCCccCCCCcHHHHHHHHHHhc-CccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc
Confidence            99999999888899999987653221 10011222233455566665542    23344455678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       167 ~  167 (253)
T PRK14267        167 K  167 (253)
T ss_pred             C
Confidence            5

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=1.9e-21  Score=164.29  Aligned_cols=142  Identities=19%  Similarity=0.239  Sum_probs=112.8

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -+|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.....++.++|++|++.
T Consensus        14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~   92 (214)
T PRK13543         14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-LHVESGQIQIDGKTATRGDRSRFMAYLGHLPG   92 (214)
T ss_pred             EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence            36788889888999999999999999999999999999999999997 56789999999987643334557899999998


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+++.+.....  . ..   ..+.++.++..+++.+.........++++++++.+++++...
T Consensus        93 ~~~~~t~~e~l~~~~~~~--~-~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  155 (214)
T PRK13543         93 LKADLSTLENLHFLCGLH--G-RR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP  155 (214)
T ss_pred             cccCCcHHHHHHHHHHhc--C-Cc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcC
Confidence            888889999987643221  1 11   123455666777776655556667888999999999999875

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-21  Score=172.52  Aligned_cols=143  Identities=24%  Similarity=0.207  Sum_probs=111.0

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFR  100 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~  100 (240)
                      +|+.+.|+.     .++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++.       ....+
T Consensus         6 ~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (290)
T PRK13634          6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-LQPTSGTVTIGERVITAGKKNKKLKPLR   84 (290)
T ss_pred             EEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence            466777753     5699999999999999999999999999999999997 5678999999998753       12345


Q ss_pred             hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++|++|++  .++ ..++.+++.+.....   ........+.+.++++.+++. +.........|+++++++.+++++
T Consensus        85 ~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         85 KKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             hhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            6799999987  344 569999988653221   223333445677788888886 445566677889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       161 ~~~  163 (290)
T PRK13634        161 AME  163 (290)
T ss_pred             HcC
Confidence            875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.87  E-value=8.7e-22  Score=171.02  Aligned_cols=138  Identities=21%  Similarity=0.271  Sum_probs=112.6

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .-+|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+.  ...++.++|++|++
T Consensus        14 ~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~--~~~~~~i~~v~q~~   90 (257)
T PRK11247         14 LLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-ETPSAGELLAGTAPL--AEAREDTRLMFQDA   90 (257)
T ss_pred             EEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEH--HHhhCceEEEecCc
Confidence            346888889888999999999999999999999999999999999997 567899999988654  23456799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.|++.+...    .     .....+.++++.+++.+.........|+++++++.+++++...
T Consensus        91 ~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~  151 (257)
T PRK11247         91 RLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR  151 (257)
T ss_pred             cCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            88888999999875310    0     1123456677777877666666677889999999999999875

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=168.16  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=110.0

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+    +++|+|.++|.+...     ...++.
T Consensus        15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   94 (258)
T PRK14268         15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKN   94 (258)
T ss_pred             EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhh
Confidence            46788888888999999999999999999999999999999999998543    479999999976531     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ +++.+++.+.....   ........+.+.++++.+++.    +.........+++++|++.+++++.
T Consensus        95 i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         95 VGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             EEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            999999998877 89999998653221   122222334455566666552    2334445567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       171 ~~  172 (258)
T PRK14268        171 VK  172 (258)
T ss_pred             cC
Confidence            75

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=6e-22  Score=159.73  Aligned_cols=139  Identities=27%  Similarity=0.351  Sum_probs=115.7

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceEEcccc
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCYIMQDN  110 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~v~Q~~  110 (240)
                      ..+...+|++|+|.|++||.++|||||||||||||-+++|+ ..|++|+|.+.|++...       .-..+.+|+|||-.
T Consensus        19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF   97 (228)
T COG4181          19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF   97 (228)
T ss_pred             CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence            34567899999999999999999999999999999999997 67899999999987531       11236899999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+.+.++..||+.+...+.-.   ........++++++++++.+....++...+++++|++.+++++..+
T Consensus        98 ~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181          98 HLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             eccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence            999999999999987665421   2233456688899999988877777777899999999999998765

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.87  E-value=2e-21  Score=164.57  Aligned_cols=144  Identities=27%  Similarity=0.385  Sum_probs=112.9

Q ss_pred             CceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhc
Q psy310           34 NNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLS  103 (240)
Q Consensus        34 ~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~  103 (240)
                      |+.+.++.    +.+|+++||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+...      ...++.+
T Consensus         6 ~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   84 (220)
T TIGR02982         6 NLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL-RSVQEGSLKVLGQELYGASEKELVQLRRNI   84 (220)
T ss_pred             EEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEhHhcCHhHHHHHHhhe
Confidence            45555543    6799999999999999999999999999999999997 56789999999986531      1245679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++|++.++..+++.+++.+.....  ...........+.++++.+++.+.........+.++++++.++++++..
T Consensus        85 ~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~  159 (220)
T TIGR02982        85 GYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR  159 (220)
T ss_pred             EEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999988899999988653321  1122333445567788888887666666667888999999999999875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=9.4e-22  Score=163.46  Aligned_cols=145  Identities=19%  Similarity=0.274  Sum_probs=113.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -.|+...||++.+|++||++|++++++|||||||||||||||+|+.+...    ..+|+|.++|+++.     .-.+|+.
T Consensus        10 ~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~   89 (253)
T COG1117          10 VRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRR   89 (253)
T ss_pred             ecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHH
Confidence            35788999999999999999999999999999999999999999996322    13699999998764     3467899


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh----hhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA----QRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      +|+|||.|.-++ +++.||+.+...++.   .......++++..+....+.+.    ......+.|++++|++.+|+++.
T Consensus        90 vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA  165 (253)
T COG1117          90 VGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             heeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence            999999999888 999999998866542   2224555666666655544332    22233457889999999999987


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       166 v~  167 (253)
T COG1117         166 VK  167 (253)
T ss_pred             cC
Confidence            64

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.6e-21  Score=173.40  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------------
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------------   95 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------------   95 (240)
                      .|+.+.|++     .++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..            
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (305)
T PRK13651          6 KNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-LLPDTGTIEWIFKDEKNKKKTKEKEKVL   84 (305)
T ss_pred             EEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEEeceecccccccccccccc
Confidence            356666654     2699999999999999999999999999999999997 5678999999875431            


Q ss_pred             ---------------chhhhhhceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhh
Q psy310           96 ---------------LSQFRKLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRC  158 (240)
Q Consensus        96 ---------------~~~~~~~~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~  158 (240)
                                     ....++.++||||++. .+...++.+++.+.....   ........+.+.++++.+++. +....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                           1234677999999862 334579999998654321   233444456677788888886 55666


Q ss_pred             ccCCCCCchhhHHHHHHHHhcc
Q psy310          159 FLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+...|+++++++.++.++...
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~  183 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAME  183 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhC
Confidence            7777889999999999999875

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-21  Score=170.35  Aligned_cols=144  Identities=21%  Similarity=0.211  Sum_probs=113.8

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~  107 (240)
                      +|+.+.++ .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...++.++|++
T Consensus         5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   83 (274)
T PRK13644          5 ENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF   83 (274)
T ss_pred             EEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEECCccccHHHHHhheEEEE
Confidence            46777774 56799999999999999999999999999999999997 56789999999987531    23456799999


Q ss_pred             cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++. .+...++.+++.+.....   ........+.+.++++.+++.+.........|++++|++.++++++..
T Consensus        84 q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~  154 (274)
T PRK13644         84 QNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME  154 (274)
T ss_pred             EChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            9985 355679999987643221   123334445677778888887777777777889999999999999875

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.9e-21  Score=178.29  Aligned_cols=144  Identities=22%  Similarity=0.252  Sum_probs=116.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhhhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~~~g~  105 (240)
                      .++.+.++...+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++..   ..    .++.++|
T Consensus        32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy  110 (400)
T PRK10070         32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-IEPTRGQVLIDGVDIAKISDAELREVRRKKIAM  110 (400)
T ss_pred             HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEE
Confidence            3466777777899999999999999999999999999999999997 56789999999987532   11    1346999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++.+|+.|++.+.....   ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus       111 v~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~  182 (400)
T PRK10070        111 VFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAIN  182 (400)
T ss_pred             EECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcC
Confidence            999999999999999998754322   122333445667788888888777777788899999999999999875

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.87  E-value=3e-21  Score=173.39  Aligned_cols=137  Identities=22%  Similarity=0.254  Sum_probs=109.2

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEEcccc--ccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLH  113 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v~Q~~--~~~  113 (240)
                      ..+|+++||+|++||+++|+|+||||||||+++|+|+ .++.+|+|.++|.++..      ..+++.++||+|++  .+.
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~  112 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN  112 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence            5799999999999999999999999999999999997 56789999999987632      12456799999998  577


Q ss_pred             ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+++.+...... ..+.+....+.+.++++.+++. +....+....|+++.|++.++++++..
T Consensus       113 p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~  179 (331)
T PRK15079        113 PRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILE  179 (331)
T ss_pred             CCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            88999999886533221 1234444556677888888874 445667777899999999999999875

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.6e-21  Score=170.16  Aligned_cols=144  Identities=22%  Similarity=0.257  Sum_probs=114.5

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEE
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v  106 (240)
                      .|+.+.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..     ....+..++|+
T Consensus         9 ~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v   87 (283)
T PRK13636          9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-LKPSSGRILFDGKPIDYSRKGLMKLRESVGMV   87 (283)
T ss_pred             EeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence            57778885 57899999999999999999999999999999999997 5678999999998763     12355789999


Q ss_pred             ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++. .+...++.+++.+.....   ........+.+..+++.+++.+..+......|++++|++.+++++...
T Consensus        88 ~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~  159 (283)
T PRK13636         88 FQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME  159 (283)
T ss_pred             ecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            99974 234579999987643221   223333345677788888888777777778899999999999999875

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=169.94  Aligned_cols=149  Identities=20%  Similarity=0.257  Sum_probs=114.9

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .-.|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus        13 ~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~   91 (265)
T PRK10575         13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-QPPSEGEILLDAQPLESWSSKAFARKVAYLP   91 (265)
T ss_pred             EEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence            456788888888999999999999999999999999999999999997 5678999999997642   223456799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.+++.+........ ........+.+..++..+++.+.........|+++++++.+++++...
T Consensus        92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  165 (265)
T PRK10575         92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD  165 (265)
T ss_pred             cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9988888889999987532111000 001112234566777778877666666677889999999999999875

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.87  E-value=2.5e-21  Score=161.46  Aligned_cols=168  Identities=21%  Similarity=0.259  Sum_probs=122.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      .|+++.++++.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+...  ...++.++|++|++
T Consensus         4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (198)
T TIGR01189         4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLP   82 (198)
T ss_pred             EEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcccchHHhhhheEEeccCc
Confidence            4677888888999999999999999999999999999999999997 56789999999976421  22346789999998


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSV  190 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~v  190 (240)
                      .+++.+++.+++.+.....  .  ..   ...+.++++.+++.+.........|+++++++.+++++.... +-.+++..
T Consensus        83 ~~~~~~tv~~~l~~~~~~~--~--~~---~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p-~llllDEP  154 (198)
T TIGR01189        83 GLKPELSALENLHFWAAIH--G--GA---QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA-PLWILDEP  154 (198)
T ss_pred             ccccCCcHHHHHHHHHHHc--C--Cc---HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC-CEEEEeCC
Confidence            8888899999987643221  1  11   223556677777766555556677889999999999998752 22333333


Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .-.+...           .+..+.++|.-+
T Consensus       155 t~~LD~~-----------~~~~l~~~l~~~  173 (198)
T TIGR01189       155 TTALDKA-----------GVALLAGLLRAH  173 (198)
T ss_pred             CcCCCHH-----------HHHHHHHHHHHH
Confidence            3222211           456677777654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3e-21  Score=170.09  Aligned_cols=144  Identities=20%  Similarity=0.174  Sum_probs=111.4

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR  100 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~  100 (240)
                      +|+.+.++.     +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++..       ...+
T Consensus         6 ~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (287)
T PRK13641          6 ENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-LKPSSGTITIAGYHITPETGNKNLKKLR   84 (287)
T ss_pred             EEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence            467777763     4699999999999999999999999999999999997 56899999999986531       2345


Q ss_pred             hhceEEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          101 KLSCYIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       101 ~~~g~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ..++|++|++. .+..+++.+++.+.....   ........+.+.++++.+++. ..........|++++|++.+++++.
T Consensus        85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641         85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             hceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            67899999973 233579999987653321   123333445567788888886 4566667778999999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       162 ~~  163 (287)
T PRK13641        162 YE  163 (287)
T ss_pred             cC
Confidence            75

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=2.9e-21  Score=166.94  Aligned_cols=146  Identities=18%  Similarity=0.258  Sum_probs=109.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+    +.+|+|.++|.++.     ....++.
T Consensus        10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   89 (254)
T PRK14273         10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK   89 (254)
T ss_pred             EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence            35788888888899999999999999999999999999999999998543    25899999997642     1234667


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.++. +++.+++.+..... . ........+.+..+++.+++    .+.........++++++++.++++++
T Consensus        90 i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~  166 (254)
T PRK14273         90 IGMVFQTPNPFL-MSIYDNISYGPKIH-G-TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA  166 (254)
T ss_pred             eEEEeecccccc-CcHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            999999988774 89999987653221 1 11222233445556666554    23334455668889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       167 ~~  168 (254)
T PRK14273        167 IE  168 (254)
T ss_pred             cC
Confidence            75

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.4e-21  Score=170.64  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=110.8

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR  100 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~  100 (240)
                      +|+.++|+.     +++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++..       ...+
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (286)
T PRK13646          6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-LKPTTGTVTVDDITITHKTKDKYIRPVR   84 (286)
T ss_pred             EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEECccccccchHHHHH
Confidence            466777753     4699999999999999999999999999999999997 56789999999987531       2456


Q ss_pred             hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++|+||++.  +++ .++.+++.+.....   ........+.+.+++..+++. +.........++++++++.+++++
T Consensus        85 ~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         85 KRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             hheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            78999999873  443 59999988653221   223334445667788888885 455566677889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       161 ~~~  163 (286)
T PRK13646        161 AMN  163 (286)
T ss_pred             HhC
Confidence            875

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=2.8e-21  Score=162.37  Aligned_cols=140  Identities=20%  Similarity=0.291  Sum_probs=110.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+++.++.+.+|+++||+|++||+++|+|+||||||||+++|+|+ .++++|+|.++|.+......++.++|++|++.+
T Consensus         6 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   84 (207)
T PRK13539          6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAM   84 (207)
T ss_pred             EeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEeCcchhhHhhcEEecCCCcC
Confidence            4678888888899999999999999999999999999999999997 567899999999765322256778999998888


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++..++.+++.+..... .  ..    .+.+.++++.+++.+.........++++++++.+++++...
T Consensus        85 ~~~~tv~~~l~~~~~~~-~--~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  145 (207)
T PRK13539         85 KPALTVAENLEFWAAFL-G--GE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSN  145 (207)
T ss_pred             CCCCcHHHHHHHHHHhc-C--Cc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcC
Confidence            88899999987643221 1  11    12355677777776555555566788999999999999875

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.6e-21  Score=167.84  Aligned_cols=148  Identities=22%  Similarity=0.264  Sum_probs=111.6

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRK  101 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~  101 (240)
                      .-.|+++.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+    |++|+|.++|.++.     ....++
T Consensus        21 ~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~  100 (267)
T PRK14235         21 RARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA  100 (267)
T ss_pred             EEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh
Confidence            346888899888999999999999999999999999999999999998553    47999999997753     123456


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.+++. ++.+++.+..... ..........+.+..+++.+++..    .........+++++|++.+++++
T Consensus       101 ~i~~v~q~~~~~~~-tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  178 (267)
T PRK14235        101 RVGMVFQKPNPFPK-SIYENVAYGPRIH-GLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI  178 (267)
T ss_pred             ceEEEecCCCCCCC-cHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            78999999888764 9999997653221 100112223345566777777643    23344566788999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       179 ~~~  181 (267)
T PRK14235        179 AVS  181 (267)
T ss_pred             HcC
Confidence            875

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.87  E-value=2e-21  Score=163.34  Aligned_cols=165  Identities=25%  Similarity=0.374  Sum_probs=122.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++.  .++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   80 (211)
T cd03298           4 DKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETPQSGRVLINGVDVTAAPPADRPVSMLFQENN   80 (211)
T ss_pred             EeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence            46677777654  399999999999999999999999999999997 56789999999976531 223467999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS  191 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs  191 (240)
                      +++.+++.|++.+......  ... ....+.+.++++.+++.+.........|+++++++.+++++...           
T Consensus        81 ~~~~~tv~enl~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~-----------  146 (211)
T cd03298          81 LFAHLTVEQNVGLGLSPGL--KLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRD-----------  146 (211)
T ss_pred             cCCCCcHHHHHhccccccc--Ccc-HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcC-----------
Confidence            9888999999876422111  111 12244566778888887766666777889999999999999865           


Q ss_pred             eEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310          192 GRLRSGELTAIMGPSGAG-----KSTLLNILTGY  220 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsG-----KSTLlk~l~G~  220 (240)
                            ..+.|+.++-+|     +-.|.++|..+
T Consensus       147 ------p~llllDEP~~~LD~~~~~~l~~~l~~~  174 (211)
T cd03298         147 ------KPVLLLDEPFAALDPALRAEMLDLVLDL  174 (211)
T ss_pred             ------CCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                  235555555553     55566666654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.87  E-value=3.7e-21  Score=164.87  Aligned_cols=148  Identities=20%  Similarity=0.191  Sum_probs=110.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~  107 (240)
                      +|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|+. .+|++|+|.++|.+...   .. .+..++|++
T Consensus         4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   83 (243)
T TIGR01978         4 KDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAF   83 (243)
T ss_pred             eeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeee
Confidence            57888888889999999999999999999999999999999999974 25789999999986532   11 123478999


Q ss_pred             ccccccccccHHHHHHHHHHHhcC--C--CccHHHHHHHHHHhhhcCCcch-hhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLG--K--DLTKAARKDVVRTLFYRSDTNH-AQRCFLS-GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~--~--~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.+++.+.......  .  ........+.+..+++.+++.. ....... ..|+++++++.+++++...
T Consensus        84 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~  162 (243)
T TIGR01978        84 QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLE  162 (243)
T ss_pred             ccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence            999999999999988764321110  0  0122222345667777777763 3344444 4888999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.2e-21  Score=167.85  Aligned_cols=146  Identities=23%  Similarity=0.298  Sum_probs=113.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++|+
T Consensus         6 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (255)
T PRK11231          6 ENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL-LTPQSGTVFLGDKPISMLSSRQLARRLALLPQH   84 (255)
T ss_pred             EeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCCcEEEECCEEhHHCCHHHHhhheEEeccc
Confidence            4778888888999999999999999999999999999999999997 5678999999997642   22345679999999


Q ss_pred             ccccccccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+++.+++.+....  ....... ......+.++++.+++.+.........|+++++++.+++++...
T Consensus        85 ~~~~~~~tv~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  156 (255)
T PRK11231         85 HLTPEGITVRELVAYGRSPWLSLWGRLS-AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD  156 (255)
T ss_pred             CCCCCCccHHHHHHhccchhhhhccCCC-HHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9888888999998753210  0000111 22234566777777877666666777889999999999999875

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=9.8e-22  Score=161.49  Aligned_cols=141  Identities=26%  Similarity=0.395  Sum_probs=121.1

Q ss_pred             CCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .++...|.+++  +|+++|++|.+||.+.++|||||||||||++++|+ ..|..|+|.++|+.+.-+  ....|.|||++
T Consensus         7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-~~P~~G~i~l~~r~i~gP--gaergvVFQ~~   83 (259)
T COG4525           7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-VTPSRGSIQLNGRRIEGP--GAERGVVFQNE   83 (259)
T ss_pred             hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-cCcccceEEECCEeccCC--CccceeEeccC
Confidence            35677777776  99999999999999999999999999999999998 567899999999866432  23459999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      .+++-+++.+|+.+...+.   ++.+..+.+.+.+++..+++.+....++-..|++++|++-+++++.-
T Consensus        84 ~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~  149 (259)
T COG4525          84 ALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAV  149 (259)
T ss_pred             ccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhc
Confidence            9999999999999986554   56788888999999999999888888877889999999988887653

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.87  E-value=2.1e-21  Score=165.39  Aligned_cols=141  Identities=25%  Similarity=0.309  Sum_probs=107.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~Q  108 (240)
                      +|+.+.++.+++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+...   . ..++.++|++|
T Consensus         4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (230)
T TIGR03410         4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQ   82 (230)
T ss_pred             EeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence            5788888888999999999999999999999999999999999997 56789999999976532   1 12457899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC-cchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD-TNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+++.+..... .  ...   .+...+++..++ +.+.........|+++++++.+++++...
T Consensus        83 ~~~~~~~~tv~~~l~~~~~~~-~--~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  149 (230)
T TIGR03410        83 GREIFPRLTVEENLLTGLAAL-P--RRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTR  149 (230)
T ss_pred             CCcccCCCcHHHHHHHHHHhc-C--cch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999988899999987653221 1  111   122334444443 33444455566788999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.7e-21  Score=168.88  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=110.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v~  107 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++..     ...++.++|++
T Consensus         5 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~   83 (271)
T PRK13638          5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVF   83 (271)
T ss_pred             EEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCccEEEECCEEcccccCCHHHHHhheEEEe
Confidence            4788888888899999999999999999999999999999999997 56789999999987531     23456799999


Q ss_pred             ccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.. ....++.+++.+.....   ........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus        84 q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~  154 (271)
T PRK13638         84 QDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ  154 (271)
T ss_pred             eChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence            99753 34457888776542211   122233344566677777777666666677889999999999999875

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.6e-21  Score=168.03  Aligned_cols=154  Identities=19%  Similarity=0.202  Sum_probs=116.9

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      .|+.+.++ .+.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|++|
T Consensus         7 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   85 (277)
T PRK13652          7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-LKPTSGSVLIRGEPITKENIREVRKFVGLVFQ   85 (277)
T ss_pred             EEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence            46778875 46799999999999999999999999999999999997 5688999999998653   2345567899999


Q ss_pred             ccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310          109 DNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL  187 (240)
Q Consensus       109 ~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il  187 (240)
                      ++. .+...++.+++.+.....   ........+.+..+++.+++.+.........|+++++++.+++++.... +-.++
T Consensus        86 ~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p-~llil  161 (277)
T PRK13652         86 NPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP-QVLVL  161 (277)
T ss_pred             CcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence            974 334679999987643221   2233334456677888888877666677778899999999999998752 23344


Q ss_pred             ccce
Q psy310          188 KSVS  191 (240)
Q Consensus       188 ~~vs  191 (240)
                      +...
T Consensus       162 DEPt  165 (277)
T PRK13652        162 DEPT  165 (277)
T ss_pred             eCCc
Confidence            4443

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.87  E-value=3.7e-21  Score=164.31  Aligned_cols=154  Identities=26%  Similarity=0.309  Sum_probs=118.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   82 (232)
T cd03300           4 ENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYA   82 (232)
T ss_pred             EeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcceEEEecccc
Confidence            4678888888999999999999999999999999999999999997 55789999999986532 123567899999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS  191 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs  191 (240)
                      ++..+++.+++.+.....   ........+.+..+++.+++.+.....+...+.++++++.++++++... +-.+|+...
T Consensus        83 ~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p-~llllDEP~  158 (232)
T cd03300          83 LFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP-KVLLLDEPL  158 (232)
T ss_pred             cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC-CEEEEcCCc
Confidence            888889999987653322   1122233445667778788876666666778899999999999998752 333444444

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.4e-21  Score=169.17  Aligned_cols=144  Identities=20%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~  107 (240)
                      .|+.+.++.  +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++..   ...++.++|++
T Consensus         9 ~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~   87 (279)
T PRK13635          9 EHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-LLPEAGTITVGGMVLSEETVWDVRRQVGMVF   87 (279)
T ss_pred             EEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECCcCcHHHHhhheEEEE
Confidence            567777764  5799999999999999999999999999999999997 56789999999987532   23456799999


Q ss_pred             cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++. ++...++.+++.+.....   ........+.+..+++.+++.+.....+...|+++++++.+++++...
T Consensus        88 q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  158 (279)
T PRK13635         88 QNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ  158 (279)
T ss_pred             eCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            9984 566789999987653221   123334455677788888887777777778899999999999999875

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.8e-21  Score=164.95  Aligned_cols=146  Identities=21%  Similarity=0.248  Sum_probs=110.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEECCccCCc---hhhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHERNL---SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v~g~~~~~---~~~~~~~g~v~  107 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++.  +|.+|+|.++|+++..   ...++.++|++
T Consensus         6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~   85 (246)
T PRK14269          6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF   85 (246)
T ss_pred             eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence            578888888899999999999999999999999999999999999753  3689999999987532   23466799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++ .++.+++.+..... ............+..+++.+++.    +.........++++++++.+++++...
T Consensus        86 q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  160 (246)
T PRK14269         86 QQPNVFV-KSIYENISYAPKLH-GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK  160 (246)
T ss_pred             cCCcccc-ccHHHHhhhHHhhc-CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9998876 69999987653221 10001122233455677776663    223344556788999999999999875

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.1e-21  Score=168.62  Aligned_cols=144  Identities=19%  Similarity=0.216  Sum_probs=112.9

Q ss_pred             CCceecCCC------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhh
Q psy310           33 TNNNCEPNE------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~  102 (240)
                      +|+++.|++      +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++..    ...++.
T Consensus         8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~~   86 (280)
T PRK13633          8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-LIPSEGKVYVDGLDTSDEENLWDIRNK   86 (280)
T ss_pred             eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEeccccccHHHHhhh
Confidence            567777753      5799999999999999999999999999999999997 56789999999987632    234678


Q ss_pred             ceEEcccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          103 SCYIMQDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       103 ~g~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++|++.. +...++.+++.+.....   ........+.++.+++.+++.+.....+...|+++++++.+++++...
T Consensus        87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         87 AGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             eEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            9999999742 23457888887653221   123334455677788888887777777788899999999999999875

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.7e-21  Score=169.65  Aligned_cols=143  Identities=21%  Similarity=0.174  Sum_probs=110.2

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFR  100 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~  100 (240)
                      +|+.+.++.     +.+|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..       ....+
T Consensus         5 ~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~   83 (288)
T PRK13643          5 EKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-LQPTEGKVTVGDIVVSSTSKQKEIKPVR   83 (288)
T ss_pred             EEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-CCCCCcEEEECCEECccccccccHHHHH
Confidence            356666653     3599999999999999999999999999999999997 5678999999998753       12356


Q ss_pred             hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++||+|++  .++. .++.+++.+.....   ..........+.++++.+++. +.........++++++++.+++++
T Consensus        84 ~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         84 KKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             hhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence            7899999987  4444 69999988754321   223344455677788888875 355566677889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       160 ~~~  162 (288)
T PRK13643        160 AME  162 (288)
T ss_pred             HhC
Confidence            875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.87  E-value=2.8e-21  Score=176.18  Aligned_cols=145  Identities=22%  Similarity=0.234  Sum_probs=118.0

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc----cCC---ch---hhh-
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH----ERN---LS---QFR-  100 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~----~~~---~~---~~~-  100 (240)
                      ..++.++++...+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.    +..   ..   ..+ 
T Consensus        27 ~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~  105 (382)
T TIGR03415        27 REEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-NPVSRGSVLVKDGDGSIDVANCDAATLRRLRT  105 (382)
T ss_pred             HHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence            34567889999999999999999999999999999999999999997 5678999999985    221   11   122 


Q ss_pred             hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++|+||++.+++.+|+.|++.+.....   ..........+.++++.+++.+.....+...|++++|++.+++++...
T Consensus       106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~  182 (382)
T TIGR03415       106 HRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMD  182 (382)
T ss_pred             CCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            47999999999999999999998764321   233444556778888888988777777777899999999999999875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.86  E-value=5.1e-21  Score=163.95  Aligned_cols=140  Identities=25%  Similarity=0.274  Sum_probs=108.4

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEc-cccccc
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIM-QDNQLH  113 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~-Q~~~~~  113 (240)
                      +.++.+++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+..  ....++.++|++ |++.++
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence            566788999999999999999999999999999999999997 5678999999997542  123456789997 556777


Q ss_pred             ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+++.+.....   ........+.+..+++.+++.+.........++++++++.+++++...
T Consensus       108 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  171 (236)
T cd03267         108 WDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHE  171 (236)
T ss_pred             CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            8899999987643321   122223344556677777776665556667888999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.86  E-value=3.6e-21  Score=163.71  Aligned_cols=142  Identities=23%  Similarity=0.263  Sum_probs=110.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      -+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|++|
T Consensus        10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   88 (225)
T PRK10247         10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ   88 (225)
T ss_pred             EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence            45788888888999999999999999999999999999999999997 5688999999997642   1234567899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++ .++.+++.+...... .  ..  ..+.+..+++.+++. ..........+.++++++.++++++..
T Consensus        89 ~~~l~~-~tv~enl~~~~~~~~-~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~  155 (225)
T PRK10247         89 TPTLFG-DTVYDNLIFPWQIRN-Q--QP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM  155 (225)
T ss_pred             cccccc-ccHHHHHHhHHhhcC-C--Ch--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            988876 599999876432211 1  11  123455677777774 344555667888999999999999875

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.6e-21  Score=165.51  Aligned_cols=143  Identities=18%  Similarity=0.278  Sum_probs=107.5

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h-hhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S-QFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~-~~~~~~g~v~  107 (240)
                      -+|+.+.++.+++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...   . ..++.++|++
T Consensus         8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (237)
T PRK11614          8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMREAVAIVP   86 (237)
T ss_pred             EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence            35788888888999999999999999999999999999999999997 56789999999986532   1 2356799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.+++.+.....  .   .....+.+..+++.+ ++.+.........|+++++++.++++++..
T Consensus        87 q~~~~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (237)
T PRK11614         87 EGRRVFSRMTVEENLAMGGFFA--E---RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ  155 (237)
T ss_pred             cCcccCCCCcHHHHHHHhhhcc--C---hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            9999888899999987643211  1   111122334444444 244434445556788999999999999865

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.86  E-value=4.5e-21  Score=162.68  Aligned_cols=139  Identities=24%  Similarity=0.328  Sum_probs=111.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..... .+.++|++|++.+
T Consensus         4 ~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~   81 (223)
T TIGR03740         4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-LRPTSGEIIFDGHPWTRKD-LHKIGSLIESPPL   81 (223)
T ss_pred             EeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEeccccc-cccEEEEcCCCCc
Confidence            5778888888999999999999999999999999999999999997 5688999999997654222 2468999999988


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+++.+..... .  ..    ...+.++++.+++.+.........|+++++++.+++++...
T Consensus        82 ~~~~t~~~~~~~~~~~~-~--~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  142 (223)
T TIGR03740        82 YENLTARENLKVHTTLL-G--LP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH  142 (223)
T ss_pred             cccCCHHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            88899999987643221 1  11    12355667777777666666667888999999999999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.7e-21  Score=167.83  Aligned_cols=144  Identities=22%  Similarity=0.236  Sum_probs=112.1

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceEE
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~v  106 (240)
                      +|+.+.++ .+++|+++||+|.+||+++|+||||||||||+++|+|+ .++.+|+|.++|.+...     ...++.++|+
T Consensus         5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v   83 (275)
T PRK13639          5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV   83 (275)
T ss_pred             EEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEECccccchHHHHHhheEEE
Confidence            46777775 46799999999999999999999999999999999997 56789999999987531     2345779999


Q ss_pred             ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++. .+...++.+++.+.....   ........+.+..+++.+++.+.........|+++.+++.+++++...
T Consensus        84 ~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~  155 (275)
T PRK13639         84 FQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK  155 (275)
T ss_pred             eeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99973 333569999987643221   122333345567788888887776667777889999999999999875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.4e-21  Score=165.99  Aligned_cols=145  Identities=20%  Similarity=0.239  Sum_probs=109.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCC-----chhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERN-----LSQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~-----~~~~~~~~  103 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|++.  +  |++|+|.++|.+..     ....++.+
T Consensus        17 ~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i   96 (260)
T PRK10744         17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV   96 (260)
T ss_pred             EEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcce
Confidence            577888888889999999999999999999999999999999999854  2  47999999997752     12346679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+.....  .........+.+.++++.+++.    +.........|+++++++.+++++..
T Consensus        97 ~~~~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~  173 (260)
T PRK10744         97 GMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI  173 (260)
T ss_pred             EEEecCCccCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence            99999998776 79999987643221  1122223334456666666652    33344556678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       174 ~  174 (260)
T PRK10744        174 R  174 (260)
T ss_pred             C
Confidence            5

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.8e-21  Score=165.53  Aligned_cols=148  Identities=23%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~  107 (240)
                      -+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...   .. .+..++|++
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   86 (255)
T PRK11300          8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-YKPTGGTILLRGQHIEGLPGHQIARMGVVRTF   86 (255)
T ss_pred             EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-cCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence            46788888888999999999999999999999999999999999997 56789999999986532   11 233578999


Q ss_pred             ccccccccccHHHHHHHHHHHh--------cCC--Cc--cHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALK--------LGK--DL--TKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLAL  175 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~--------~~~--~l--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (240)
                      |++.+++.+++.+++.+.....        ...  ..  ........+.++++.+++.+.........|+++++++.+++
T Consensus        87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~  166 (255)
T PRK11300         87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR  166 (255)
T ss_pred             cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence            9999999999999988643210        000  00  11122344666777778776666667778899999999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++...
T Consensus       167 al~~~  171 (255)
T PRK11300        167 CMVTQ  171 (255)
T ss_pred             HHhcC
Confidence            99875

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=168.84  Aligned_cols=148  Identities=17%  Similarity=0.238  Sum_probs=115.5

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .-+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....+..++|++
T Consensus         9 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~   87 (265)
T PRK10253          9 RGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-MTPAHGHVWLDGEHIQHYASKEVARRIGLLA   87 (265)
T ss_pred             EEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence            356888899888999999999999999999999999999999999997 5678999999997652   223456799999


Q ss_pred             ccccccccccHHHHHHHHHHHhc--CCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKL--GKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~--~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++..++.+++.+......  ..... ......+..+++.+++.+.........|+++++++.+++++...
T Consensus        88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~  161 (265)
T PRK10253         88 QNATTPGDITVQELVARGRYPHQPLFTRWR-KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE  161 (265)
T ss_pred             ccCcCCCCCcHHHHHHhCcccccccccCCC-HHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence            99988888999998865311100  00011 12234566777878887766677777899999999999999875

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.86  E-value=5.7e-21  Score=163.70  Aligned_cols=144  Identities=26%  Similarity=0.328  Sum_probs=113.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~   82 (237)
T TIGR00968         4 ANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYA   82 (237)
T ss_pred             EEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEEcCcCChhhcCEEEEecChh
Confidence            4667777788999999999999999999999999999999999997 56789999999976532 223467999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++..++.|++.+.....   ........+.+.++++.+++...........|.++++++.+++++...
T Consensus        83 ~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~  148 (237)
T TIGR00968        83 LFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVE  148 (237)
T ss_pred             hccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            988899999987653321   112222234556777777776656666667888999999999999875

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.86  E-value=4.4e-21  Score=166.11  Aligned_cols=147  Identities=22%  Similarity=0.275  Sum_probs=112.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~  109 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+...   ...++.++|++|+
T Consensus         5 ~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   83 (256)
T TIGR03873         5 SRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-LRPDAGTVDLAGVDLHGLSRRARARRVALVEQD   83 (256)
T ss_pred             EeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence            4677888888999999999999999999999999999999999997 56789999999976532   2334568999999


Q ss_pred             ccccccccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++...++.+++.+....... .........+.+.++++.+++.+.........++++++++.+++++...
T Consensus        84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (256)
T TIGR03873        84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQE  155 (256)
T ss_pred             CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            8777788999998763211000 0011112234566677777776666666677889999999999999875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.4e-21  Score=168.22  Aligned_cols=144  Identities=17%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++.+    |++|+|.++|.+..     ....++.
T Consensus        16 i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~   95 (269)
T PRK14259         16 LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR   95 (269)
T ss_pred             EEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhc
Confidence            46888899888999999999999999999999999999999999998543    58999999997642     2234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .|+.|++.+.....   .... ...+.+.++++.+++    .+.........++++++++.+++++.
T Consensus        96 i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         96 IGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             eEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            999999998877 49999987653221   1111 122334444554443    23334445567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       171 ~~  172 (269)
T PRK14259        171 IE  172 (269)
T ss_pred             cC
Confidence            75

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.86  E-value=3.9e-21  Score=174.07  Aligned_cols=139  Identities=20%  Similarity=0.260  Sum_probs=112.1

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceEE
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCYI  106 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~v  106 (240)
                      |+.+.++++.+  ++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...       ...++.++|+
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            57788887664  89999999999999999999999999999997 56789999999976521       2345679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+|+.+++.+.....     ......+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999999999998653211     1122344567788888888777777778899999999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=7.5e-21  Score=165.81  Aligned_cols=146  Identities=21%  Similarity=0.241  Sum_probs=109.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+    +++|+|.++|.++..     ...++.
T Consensus        23 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~  102 (267)
T PRK14237         23 TKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKH  102 (267)
T ss_pred             EeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcc
Confidence            45788888889999999999999999999999999999999999998543    579999999987531     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+..... . ...+....+.+.++++.+++.    +.........++++++++.++++++
T Consensus       103 i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~  179 (267)
T PRK14237        103 IGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA  179 (267)
T ss_pred             eEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999988876 59999998653221 1 112223334455566666553    2334445567888999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       180 ~~  181 (267)
T PRK14237        180 VK  181 (267)
T ss_pred             cC
Confidence            75

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=8e-21  Score=164.03  Aligned_cols=147  Identities=17%  Similarity=0.226  Sum_probs=110.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -+|+++.++++++|+++||+|.+||+++|+|+||||||||+++|+|++.  +  +++|+|.++|.++..     ...++.
T Consensus         7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~   86 (252)
T PRK14256          7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR   86 (252)
T ss_pred             EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhcc
Confidence            4678888888899999999999999999999999999999999999753  2  258999999987531     234667


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++.+++.+++.+.....  .........+.+..+++.+++..    .........++++++++.+++++.
T Consensus        87 i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~  164 (252)
T PRK14256         87 VGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA  164 (252)
T ss_pred             EEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence            999999999988899999987643221  11122222344566666666532    233445567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       165 ~~  166 (252)
T PRK14256        165 VK  166 (252)
T ss_pred             cC
Confidence            65

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=4.9e-21  Score=166.32  Aligned_cols=148  Identities=25%  Similarity=0.268  Sum_probs=113.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCc--------hhhhhh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNL--------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~--------~~~~~~  102 (240)
                      .|+++.++++++|+++||+|.+||+++|+|||||||||||++|+|++.+.  .+|+|.++|.++..        ...++.
T Consensus         8 ~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK09984          8 EKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN   87 (262)
T ss_pred             eeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence            57788888889999999999999999999999999999999999985432  25999999976531        223567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcC-----CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLG-----KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~-----~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      ++|++|++.+++.+|+.+++.+.......     ........+..+.++++.+++.+.........+.++++++.+++++
T Consensus        88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  167 (262)
T PRK09984         88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL  167 (262)
T ss_pred             eEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHH
Confidence            89999999988889999998754211000     0001122344567788888887666666677889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       168 ~~~  170 (262)
T PRK09984        168 MQQ  170 (262)
T ss_pred             hcC
Confidence            875

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.8e-21  Score=167.85  Aligned_cols=144  Identities=17%  Similarity=0.212  Sum_probs=113.0

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc---cEEEECCccCCc---hhhhhhce
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE---GSITINGHERNL---SQFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~---G~V~v~g~~~~~---~~~~~~~g  104 (240)
                      .|+.+.+++  +++|+++||+|.+||+++|+||||||||||+++|+|++ +|.+   |+|.++|.+...   ...++.++
T Consensus         9 ~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig   87 (282)
T PRK13640          9 KHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDIREKVG   87 (282)
T ss_pred             EEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence            467777754  57999999999999999999999999999999999984 4555   999999987632   23456799


Q ss_pred             EEccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          105 YIMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       105 ~v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++|++. ++...++.+++.+.....   ........+.+..+++.+++.+.....+...|+++.+++.+++++...
T Consensus        88 ~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~  161 (282)
T PRK13640         88 IVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE  161 (282)
T ss_pred             EEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            9999984 566789999997643221   223334445677788888887766677777889999999999999875

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.9e-21  Score=165.07  Aligned_cols=139  Identities=27%  Similarity=0.344  Sum_probs=108.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.   ....++.++|++|+
T Consensus         7 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~   85 (241)
T PRK14250          7 KEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQ   85 (241)
T ss_pred             EeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEhhhcChHHhhhcEEEEecC
Confidence            5678888888999999999999999999999999999999999997 5678999999997652   22345679999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++ .++.+++.+.....   .  .  ....+.++++.+++. +.........++++++++.+++++...
T Consensus        86 ~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~  149 (241)
T PRK14250         86 PHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN  149 (241)
T ss_pred             chhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            88775 68999876532211   1  1  123455667777775 445556667888999999999999875

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.86  E-value=1.2e-20  Score=161.58  Aligned_cols=143  Identities=23%  Similarity=0.277  Sum_probs=112.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      .|+.+.+++. +|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~   81 (235)
T cd03299           4 ENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-IKPDSGKILLNGKDITNLPPEKRDISYVPQNYA   81 (235)
T ss_pred             EeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence            3566777664 89999999999999999999999999999999997 56789999999986532 223567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+++.+.....   ........+.+.++++.+++.+.........++++++++.++++++..
T Consensus        82 ~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  147 (235)
T cd03299          82 LFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVN  147 (235)
T ss_pred             cCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence            888899999987653221   122233344566677778887766666777889999999999999875

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=8.7e-21  Score=166.35  Aligned_cols=143  Identities=20%  Similarity=0.183  Sum_probs=108.1

Q ss_pred             CCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhh
Q psy310           33 TNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFR  100 (240)
Q Consensus        33 ~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~  100 (240)
                      +|+.+.+++     +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...       ...+
T Consensus         6 ~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (280)
T PRK13649          6 QNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-HVPTQGSVRVDDTLITSTSKNKDIKQIR   84 (280)
T ss_pred             EEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccCHHHHH
Confidence            466777754     4699999999999999999999999999999999997 56789999999976531       2345


Q ss_pred             hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++|++|++  .++ ..++.+++.+.....   ........+.++.+++.+++. ..........|+++++++.+++++
T Consensus        85 ~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         85 KKVGLVFQFPESQLF-EETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             hheEEEeeChhhhhc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            6799999997  344 469999987643221   122233344566677777775 344556667889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       161 ~~~  163 (280)
T PRK13649        161 AME  163 (280)
T ss_pred             HcC
Confidence            875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-20  Score=169.56  Aligned_cols=136  Identities=21%  Similarity=0.253  Sum_probs=108.4

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhhceEEcccc--ccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKLSCYIMQDN--QLH  113 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~~g~v~Q~~--~~~  113 (240)
                      ..+|++|||+|.+||++||+|+||||||||+++|+|+ .++.+|+|.++|.++..      ..+++.++||||++  .+.
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~  106 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN  106 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence            5799999999999999999999999999999999997 56789999999987531      23456799999998  477


Q ss_pred             ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+++.......  .........+.+.++++.+++.. ....+....|++++|++.+++++...
T Consensus       107 p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~  172 (327)
T PRK11308        107 PRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLD  172 (327)
T ss_pred             CccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcC
Confidence            7889988876543322  12234445567788888888853 45666778899999999999999875

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.86  E-value=9.1e-21  Score=165.07  Aligned_cols=137  Identities=21%  Similarity=0.315  Sum_probs=104.5

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hhhhhceEEcccc--cc
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QFRKLSCYIMQDN--QL  112 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~~~~~g~v~Q~~--~~  112 (240)
                      ++.+|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+...   .   ..++.++|++|++  .+
T Consensus        23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~  101 (265)
T TIGR02769        23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV  101 (265)
T ss_pred             ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence            46799999999999999999999999999999999997 56789999999976531   1   1356799999997  35


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+.+++.+++.+.....  .........+.+.++++.+++. +.........++++++++.+++++...
T Consensus       102 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~  168 (265)
T TIGR02769       102 NPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVK  168 (265)
T ss_pred             CCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            66789999886543211  1122223344566777777775 445556667889999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.86  E-value=1.4e-20  Score=159.73  Aligned_cols=144  Identities=23%  Similarity=0.208  Sum_probs=106.9

Q ss_pred             CCceecCCC-------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC--c--cCC---chh
Q psy310           33 TNNNCEPNE-------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--H--ERN---LSQ   98 (240)
Q Consensus        33 ~~~~~~~~~-------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g--~--~~~---~~~   98 (240)
                      +|+.+.++.       +++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.+++  .  +..   ...
T Consensus         5 ~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~~~g~~~~~~~~~~~~   83 (224)
T TIGR02324         5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-YLPDSGRILVRHEGAWVDLAQASPRE   83 (224)
T ss_pred             EeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEEecCCCccchhhcCHHH
Confidence            456666642       4799999999999999999999999999999999997 557899999974  2  221   111


Q ss_pred             ---h-hhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHH
Q psy310           99 ---F-RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLL  173 (240)
Q Consensus        99 ---~-~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  173 (240)
                         . ++.++|++|++.+++.+++.|++.+.....   ........+.+.++++.+++.+. ........++++++++.+
T Consensus        84 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        84 VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence               1 346899999999999999999987643221   12222334456667777777653 344566788899999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++++...
T Consensus       161 aral~~~  167 (224)
T TIGR02324       161 ARGFIAD  167 (224)
T ss_pred             HHHHhcC
Confidence            9999875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=1.1e-20  Score=159.34  Aligned_cols=138  Identities=25%  Similarity=0.291  Sum_probs=110.3

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceEE
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCYI  106 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~v  106 (240)
                      |++++|+++.+  ++||+|++ |+++|+|||||||||||++|+|+ .+|++|+|.++|.+..       ....++.++|+
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~   80 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL-EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV   80 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence            67889998876  99999999 99999999999999999999997 5678999999997642       11245679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+++.+++.+.....     ......+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  149 (214)
T cd03297          81 FQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ  149 (214)
T ss_pred             ecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence            99999888899999987643211     1222344566778888887666666677889999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.86  E-value=9e-21  Score=183.90  Aligned_cols=148  Identities=32%  Similarity=0.444  Sum_probs=116.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-CccEEEECCccCCchhhhhhceEEcccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      ..|+.+.++++.+|+++||+|++||++||+|||||||||||++|+|+..+. .+|+|.++|.+... ..++.++||+|++
T Consensus        71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~  149 (659)
T PLN03211         71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDD  149 (659)
T ss_pred             cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-hhccceEEECccc
Confidence            345667888899999999999999999999999999999999999974432 48999999987642 3345689999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----hccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----CFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+|++|++.+...+.......+....+.++++++.+++.+..+     ....+.++++++++.+++++...
T Consensus       150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~  224 (659)
T PLN03211        150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN  224 (659)
T ss_pred             ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence            99999999999988654433323334444566777888888766542     23456789999999999999875

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.86  E-value=1.2e-20  Score=164.51  Aligned_cols=145  Identities=23%  Similarity=0.259  Sum_probs=108.5

Q ss_pred             CCceecCC---------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhh
Q psy310           33 TNNNCEPN---------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFR  100 (240)
Q Consensus        33 ~~~~~~~~---------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~  100 (240)
                      .|+.+.++         .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++..   ...+
T Consensus         8 ~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~   86 (267)
T PRK15112          8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGELLIDDHPLHFGDYSYRS   86 (267)
T ss_pred             eceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCCCEEEECCEECCCCchhhHh
Confidence            45666664         35799999999999999999999999999999999997 56789999999977532   1223


Q ss_pred             hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++|++|++.  +.+.+++.+++.+......  ........+.+..+++.+++. +.........|+++++++.+++++
T Consensus        87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  164 (267)
T PRK15112         87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL  164 (267)
T ss_pred             ccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHH
Confidence            56899999975  4566788888775432211  122233344566778888874 445555667888999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       165 ~~~  167 (267)
T PRK15112        165 ILR  167 (267)
T ss_pred             HhC
Confidence            875

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.4e-20  Score=162.58  Aligned_cols=146  Identities=20%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -+|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++.  +  +++|+|.++|.+...     ...++.
T Consensus         9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   88 (253)
T PRK14242          9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRR   88 (253)
T ss_pred             EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence            3578888888889999999999999999999999999999999999742  2  479999999976531     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+..... . ........+.+..+++.+++.+    .........+++++|++.+++++.
T Consensus        89 i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  165 (253)
T PRK14242         89 VGMVFQKPNPFP-KSIFENVAYGLRVN-G-VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             EEEEecCCCCCc-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999998877 59999987653221 1 1112223445556666666532    233345567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       166 ~~  167 (253)
T PRK14242        166 VE  167 (253)
T ss_pred             cC
Confidence            75

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=162.26  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=108.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+    +.+|+|.++|.+...     ...++.+
T Consensus         7 ~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14262          7 ENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV   86 (250)
T ss_pred             EeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence            5778888888999999999999999999999999999999999997543    378999999976532     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+..... . ........+.+..+++.+++.    +.........++++++++.++++++.
T Consensus        87 ~~~~q~~~~~~-~tv~e~l~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~  163 (250)
T PRK14262         87 GMVFQKPTPFP-MSIYDNVAFGPRIH-G-VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV  163 (250)
T ss_pred             EEEecCCccCc-ccHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence            99999998877 89999987653221 1 111222233445555555543    22344556678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       164 ~  164 (250)
T PRK14262        164 E  164 (250)
T ss_pred             C
Confidence            5

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.1e-20  Score=166.67  Aligned_cols=144  Identities=17%  Similarity=0.159  Sum_probs=108.1

Q ss_pred             CCceecCCCc-----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--------chhh
Q psy310           33 TNNNCEPNEK-----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--------LSQF   99 (240)
Q Consensus        33 ~~~~~~~~~~-----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--------~~~~   99 (240)
                      +|+.+.++++     ++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..        ....
T Consensus        10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~~   88 (289)
T PRK13645         10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-IISETGQTIVGDYAIPANLKKIKEVKRL   88 (289)
T ss_pred             EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCEEccccccccccHHHH
Confidence            5677777654     499999999999999999999999999999999997 5678999999997642        1234


Q ss_pred             hhhceEEcccccc-cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHH
Q psy310          100 RKLSCYIMQDNQL-HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       100 ~~~~g~v~Q~~~~-~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      ++.++|++|++.. ....++.+++.+.....   ........+.+..+++.+++. +.........|+++++++.+++++
T Consensus        89 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral  165 (289)
T PRK13645         89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII  165 (289)
T ss_pred             hccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence            5678999999742 22458999887653221   122233334556677777773 455556677889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       166 ~~~  168 (289)
T PRK13645        166 AMD  168 (289)
T ss_pred             HhC
Confidence            875

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=164.88  Aligned_cols=147  Identities=18%  Similarity=0.194  Sum_probs=110.3

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc----hhhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL----SQFRKL  102 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~----~~~~~~  102 (240)
                      .-+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+    +++|+|.++|.++..    ...+..
T Consensus        23 ~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~  102 (276)
T PRK14271         23 AAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRR  102 (276)
T ss_pred             EEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhh
Confidence            347899999999999999999999999999999999999999999998543    479999999976531    234667


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+.....  ...........+..++..+++.+    .........++++++++.++++++
T Consensus       103 i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~  179 (276)
T PRK14271        103 VGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA  179 (276)
T ss_pred             eEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            999999998877 79999887643221  11122223334455566666542    223345567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       180 ~~  181 (276)
T PRK14271        180 VN  181 (276)
T ss_pred             cC
Confidence            75

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.3e-20  Score=164.46  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .|+.+.+++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|++
T Consensus        11 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~   89 (269)
T PRK13648         11 KNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-EKVKSGEIFYNNQAITDDNFEKLRKHIGIVF   89 (269)
T ss_pred             EEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHhheeEEE
Confidence            567777765  4599999999999999999999999999999999997 5678999999998653   224456799999


Q ss_pred             cccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++. ++...++.+++.+.....   ........+.+..+++.+++.+.........++++++++.+++++...
T Consensus        90 q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  160 (269)
T PRK13648         90 QNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN  160 (269)
T ss_pred             eChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            9985 566678888876643221   122233344566777877877666666677888999999999999875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=161.92  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=108.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      .|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+..+ |   ++|+|.++|.+...     ...++.+
T Consensus         7 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14240          7 KDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV   86 (250)
T ss_pred             EEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccE
Confidence            5788888888999999999999999999999999999999999997432 2   68999999987531     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+..... . ........+.+.++++.+++.    +.........++++++++.++++++.
T Consensus        87 ~~~~q~~~~~~-~t~~~ni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14240         87 GMVFQQPNPFP-MSIYDNVAYGPRTH-G-IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV  163 (250)
T ss_pred             EEEecCCccCc-ccHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence            99999988877 89999998653221 1 112222344455555555542    23344556678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       164 ~  164 (250)
T PRK14240        164 E  164 (250)
T ss_pred             C
Confidence            5

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=162.19  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=108.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|+..+    +++|+|.++|.++..     ...++.+
T Consensus         8 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   87 (251)
T PRK14270          8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRV   87 (251)
T ss_pred             EEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhhe
Confidence            5677888888899999999999999999999999999999999997543    378999999987531     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+..... . ........+.+..+++.+++.    +.........+.++++++.+++++..
T Consensus        88 ~~~~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  164 (251)
T PRK14270         88 GMVFQKPNPFP-MSIYDNVAYGPRIH-G-IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV  164 (251)
T ss_pred             EEEecCCCcCC-CcHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            99999998876 89999987653221 1 111222334455566666542    23344556678899999999999986


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       165 ~  165 (251)
T PRK14270        165 K  165 (251)
T ss_pred             C
Confidence            4

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=161.79  Aligned_cols=146  Identities=21%  Similarity=0.259  Sum_probs=107.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC----chhhhhhc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN----LSQFRKLS  103 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~----~~~~~~~~  103 (240)
                      -.|+.+.++++.+|+++||+|.+||+++|+||||||||||+++|+|++.+    +++|+|.++|.++.    ....++.+
T Consensus         6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i   85 (249)
T PRK14253          6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKV   85 (249)
T ss_pred             EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhhe
Confidence            35788888888999999999999999999999999999999999997543    36899999997652    22345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+..... . ...+....+.+..+++.+++.    +.........++++++++.+++++..
T Consensus        86 ~~~~q~~~~~~-~tv~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  162 (249)
T PRK14253         86 GMVFQKPNPFP-MSIYENVAYGLRAQ-G-IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM  162 (249)
T ss_pred             eEEecCCCcCc-ccHHHHHHhHHHhc-C-CCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence            99999998886 89999987653221 1 111222233444455555442    23334455678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       163 ~  163 (249)
T PRK14253        163 E  163 (249)
T ss_pred             C
Confidence            5

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=5.6e-21  Score=167.25  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=110.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC--------ccEEEECCccCC---chhhhh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT--------EGSITINGHERN---LSQFRK  101 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~--------~G~V~v~g~~~~---~~~~~~  101 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|++ +|.        +|+|.++|.+..   ....++
T Consensus         5 ~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (272)
T PRK13547          5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAPRLAR   83 (272)
T ss_pred             EEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHHHHHh
Confidence            46788888889999999999999999999999999999999999974 455        899999997653   223455


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      .++|++|++..+..+++.|++.+.......  .... ....+.+..+++.+++.+.........|+++++++.++++++
T Consensus        84 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~  161 (272)
T PRK13547         84 LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALT-HRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA  161 (272)
T ss_pred             hcEEecccCCCCCCCcHHHHHhhcccccccccccCC-HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            689999998766678999998764211100  0111 122345666777778776666666778899999999999888

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.3e-20  Score=158.78  Aligned_cols=152  Identities=25%  Similarity=0.342  Sum_probs=113.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++.  ++.++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus         4 ~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   80 (213)
T TIGR01277         4 DKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN   80 (213)
T ss_pred             EeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence            355666653  46899999999999999999999999999999997 56789999999986531 234567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS  191 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs  191 (240)
                      +++.+++.+++.+......  .... .....+.++++.+++.+.....+...+.++++++.+++++... .+-.+++...
T Consensus        81 ~~~~~t~~en~~~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~-p~llllDEPt  156 (213)
T TIGR01277        81 LFAHLTVRQNIGLGLHPGL--KLNA-EQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRP-NPILLLDEPF  156 (213)
T ss_pred             cCCCCcHHHHHHhHhhccC--CccH-HHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcC-CCEEEEcCCC
Confidence            9888999999875422111  1111 2234456677888887766666777889999999999999875 2333444443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=162.24  Aligned_cols=146  Identities=21%  Similarity=0.224  Sum_probs=107.8

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -+|+.+.++.+++|+++||+|.+||+++|+|+||||||||+++|+|++.+    +.+|+|.++|.+...     ...++.
T Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~   86 (251)
T PRK14251          7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKE   86 (251)
T ss_pred             EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhcc
Confidence            35788888888999999999999999999999999999999999998542    479999999986521     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.++. .++.+++.+..... . ........+.+..+++.+++.    +.........++++++++.+++++.
T Consensus        87 i~~~~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~  163 (251)
T PRK14251         87 VGMVFQQPTPFP-FSVYDNVAYGLKIA-G-VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA  163 (251)
T ss_pred             EEEEecCCccCC-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence            999999998775 79999987643221 1 111222233445566665552    2233445567888999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       164 ~~  165 (251)
T PRK14251        164 VR  165 (251)
T ss_pred             cC
Confidence            74

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.5e-20  Score=164.79  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=112.7

Q ss_pred             CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEE
Q psy310           33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v  106 (240)
                      +|+.+.++.   .++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.++..   ...++.++|+
T Consensus         8 ~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v   86 (277)
T PRK13642          8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-FEEFEGKVKIDGELLTAENVWNLRRKIGMV   86 (277)
T ss_pred             EEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence            567777763   3599999999999999999999999999999999997 56889999999987532   3456779999


Q ss_pred             ccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++. .+...++.+++.+.....   ........+.++.+++.+++.+.........++++++++.+++++...
T Consensus        87 ~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~  158 (277)
T PRK13642         87 FQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR  158 (277)
T ss_pred             EECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            99985 566789999997643211   122333345567777877877666666677889999999999999876

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=164.21  Aligned_cols=147  Identities=19%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCC-----chhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERN-----LSQFRK  101 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~-----~~~~~~  101 (240)
                      .-+|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.  +  |++|+|.++|.+..     ....++
T Consensus        26 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  105 (271)
T PRK14238         26 DTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT  105 (271)
T ss_pred             EEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh
Confidence            35788888888899999999999999999999999999999999999744  2  58999999997652     123456


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC----cchhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD----TNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.++. .++.+++.+.....  ...........+..+++.++    +.+.........++++++++.+++++
T Consensus       106 ~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL  182 (271)
T PRK14238        106 NVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL  182 (271)
T ss_pred             hEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            7999999998876 49999988653221  11112222333444444432    23333445566788999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       183 ~~~  185 (271)
T PRK14238        183 AIE  185 (271)
T ss_pred             HcC
Confidence            875

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1e-20  Score=171.24  Aligned_cols=135  Identities=23%  Similarity=0.298  Sum_probs=109.7

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceEE
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCYI  106 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~v  106 (240)
                      |+.+.++++.+  ++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..       ....++.++|+
T Consensus         5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v   81 (352)
T PRK11144          5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGL-TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV   81 (352)
T ss_pred             EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccccccccchhhCCEEEE
Confidence            66778877543  89999999999999999999999999999997 5678999999997642       22346789999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+++.+++.+...    .     ...+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        82 ~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~  146 (352)
T PRK11144         82 FQDARLFPHYKVRGNLRYGMA----K-----SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             cCCcccCCCCcHHHHHHhhhh----h-----hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            999999999999999876421    0     1133466677878887766777778899999999999999875

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=165.13  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=109.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++.+|+++||+|.+||+++|+|||||||||||++|+|++.+    |++|+|.++|.+..     ....++.
T Consensus        42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~  121 (285)
T PRK14254         42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR  121 (285)
T ss_pred             EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhcc
Confidence            46888899888999999999999999999999999999999999998543    57999999997652     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++. ++.+++.+......   ... ...+.+..+++.+++.    +.........++++++++.+++++.
T Consensus       122 i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        122 IGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             EEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            9999999887764 99999876533221   111 2233456666666653    2334455668889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       197 ~~  198 (285)
T PRK14254        197 PD  198 (285)
T ss_pred             cC
Confidence            65

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=1.5e-20  Score=168.13  Aligned_cols=145  Identities=20%  Similarity=0.233  Sum_probs=111.1

Q ss_pred             cCCCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC----------
Q psy310           31 TNTNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN----------   95 (240)
Q Consensus        31 ~~~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~----------   95 (240)
                      .-+|+.+.|++     +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..          
T Consensus        23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~  101 (320)
T PRK13631         23 RVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-IKSKYGTIQVGDIYIGDKKNNHELIT  101 (320)
T ss_pred             EEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCEEcccccccccccc
Confidence            34677777764     4699999999999999999999999999999999998 5678999999986542          


Q ss_pred             ---------chhhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCC
Q psy310           96 ---------LSQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGP  163 (240)
Q Consensus        96 ---------~~~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~  163 (240)
                               ....++.++||+|++  .++. .++.+++.+.....   ........+.+.++++.+++. +.........
T Consensus       102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L  177 (320)
T PRK13631        102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL  177 (320)
T ss_pred             cccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence                     123567899999997  3444 59999987653221   123333445667778888885 4555566678


Q ss_pred             CCchhhHHHHHHHHhcc
Q psy310          164 WGTFESSVLLALAMYNR  180 (240)
Q Consensus       164 ~~~~~~~~~~~~~~~~~  180 (240)
                      |++++|++.+++++...
T Consensus       178 SgGqkqRvaiAraL~~~  194 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQ  194 (320)
T ss_pred             CHHHHHHHHHHHHHHcC
Confidence            89999999999999875

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2e-20  Score=162.24  Aligned_cols=146  Identities=19%  Similarity=0.210  Sum_probs=108.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|+|||||||||++|+|++.+ |   ++|+|.++|.++.     ....++.
T Consensus        15 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~   94 (259)
T PRK14274         15 INGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKN   94 (259)
T ss_pred             EeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhc
Confidence            45788888888999999999999999999999999999999999997542 3   5899999998753     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++. ++.+++.+.....  .........+.+..+++.+++.    +.........++++++++.++++++
T Consensus        95 i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~  171 (259)
T PRK14274         95 IGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA  171 (259)
T ss_pred             eEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988774 9999987653221  1112222334455566665553    2233445567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       172 ~~  173 (259)
T PRK14274        172 TN  173 (259)
T ss_pred             cC
Confidence            75

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.5e-20  Score=167.11  Aligned_cols=146  Identities=20%  Similarity=0.227  Sum_probs=109.9

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---CCccEEEECCccCCc---hhhh--
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS---GTEGSITINGHERNL---SQFR--  100 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~---~~~G~V~v~g~~~~~---~~~~--  100 (240)
                      +|+.+.|+.    ..+|++|||+|++||++||||+||||||||+++|+|++.+   +.+|+|.++|.++..   ...+  
T Consensus         7 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~   86 (326)
T PRK11022          7 DKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL   86 (326)
T ss_pred             eCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence            456666655    4799999999999999999999999999999999998543   378999999987531   1122  


Q ss_pred             --hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch---hhhhccCCCCCchhhHHHH
Q psy310          101 --KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH---AQRCFLSGPWGTFESSVLL  173 (240)
Q Consensus       101 --~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~  173 (240)
                        +.++||||++.  +.+.+++.+.+........  .......++.+.++++.+++.+   ....+....|++++|++.+
T Consensus        87 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~i  164 (326)
T PRK11022         87 VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMI  164 (326)
T ss_pred             hCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHH
Confidence              36899999984  6778888877654432221  1233444566778888888864   2345667788999999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++++...
T Consensus       165 ArAL~~~  171 (326)
T PRK11022        165 AMAIACR  171 (326)
T ss_pred             HHHHHhC
Confidence            9999875

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.85  E-value=4.5e-21  Score=159.28  Aligned_cols=145  Identities=26%  Similarity=0.315  Sum_probs=119.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQD  109 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~  109 (240)
                      .|+.+...++.+++++||++.+||+++|+||||||||||||+|+|. ..|.+|++.++|.+..   ...+.+..++++|+
T Consensus         5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~   83 (259)
T COG4559           5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQN   83 (259)
T ss_pred             eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc-cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence            5788999999999999999999999999999999999999999996 5678999999998764   34567788999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      ..+-..++|+|.+.+...-+.. .-...+..+++++.+.+.+..+...+.....+++++|++.+++.+.+
T Consensus        84 s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ  152 (259)
T COG4559          84 SSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ  152 (259)
T ss_pred             cccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence            9998899999998876432211 11222445668888888999998888888888999998888776543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.7e-20  Score=160.56  Aligned_cols=146  Identities=26%  Similarity=0.281  Sum_probs=108.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CC---CccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SG---TEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~---~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+.. .|   ++|+|.++|.+..     ....++.
T Consensus         8 ~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~   87 (252)
T PRK14239          8 VSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKE   87 (252)
T ss_pred             EEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhc
Confidence            3678888888899999999999999999999999999999999999732 24   5899999998652     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+..... . ........+.+..+++.+++.    +.........++++++++.+++++.
T Consensus        88 i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14239         88 IGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA  164 (252)
T ss_pred             EEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            999999998876 89999987653221 1 111222334455566665542    2334455667889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       165 ~~  166 (252)
T PRK14239        165 TS  166 (252)
T ss_pred             cC
Confidence            65

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=3.9e-21  Score=156.24  Aligned_cols=146  Identities=25%  Similarity=0.307  Sum_probs=124.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------------   96 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------------   96 (240)
                      -.|+-+.||...+|++||++..+|+++.|||.||||||||||||+=+ ..|..|.|.++|..+..               
T Consensus         9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L-E~P~~G~I~v~geei~~k~~~~G~l~~ad~~q   87 (256)
T COG4598           9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-EKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ   87 (256)
T ss_pred             hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh-cCCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence            45778999999999999999999999999999999999999999965 77899999999976421               


Q ss_pred             -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHH
Q psy310           97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLAL  175 (240)
Q Consensus        97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (240)
                       ..+|...++|||...++.++|+.||+.-+....+  +..+....+.++.++..+++.+..+.++...++++.|++.+++
T Consensus        88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR  165 (256)
T COG4598          88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR  165 (256)
T ss_pred             HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence             2346678999999999999999999876554333  3455666778888999999999988888889999999999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++...
T Consensus       166 aLame  170 (256)
T COG4598         166 ALAME  170 (256)
T ss_pred             HHhcC
Confidence            88764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.4e-20  Score=161.84  Aligned_cols=146  Identities=18%  Similarity=0.248  Sum_probs=108.5

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--C--CccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--G--TEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~--~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -.|+.+.++.+++|+++||+|.+||+++|+|+|||||||||++|+|++.+  +  ++|+|.++|.+...     ...+..
T Consensus        10 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   89 (259)
T PRK14260         10 VKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQ   89 (259)
T ss_pred             EEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhh
Confidence            35788888888899999999999999999999999999999999997543  2  48999999976521     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .|+.|++.+.....  ....+....+.+.++++.+++    .+.........++++++++.+++++.
T Consensus        90 i~~v~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  166 (259)
T PRK14260         90 IGMVFQRPNPFP-MSIYENVAYGVRIS--AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA  166 (259)
T ss_pred             eEEEecccccCC-ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999998876 89999987653221  111222223445555665554    23334455567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       167 ~~  168 (259)
T PRK14260        167 IK  168 (259)
T ss_pred             cC
Confidence            64

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=3.4e-21  Score=168.11  Aligned_cols=167  Identities=26%  Similarity=0.290  Sum_probs=138.4

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhh-hhhceEE
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQF-RKLSCYI  106 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~-~~~~g~v  106 (240)
                      .+..+.|...-++++||+|+.||++.|+|-||||||||+|+|+++ ..|..|+|.++|.++.      +..+ ++.+++|
T Consensus        33 ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV  111 (386)
T COG4175          33 EILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-IEPTRGEILVDGKDIAKLSAAELRELRRKKISMV  111 (386)
T ss_pred             HHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhcc-CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence            344566677789999999999999999999999999999999997 5689999999998763      1223 3678999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccc-----
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRI-----  181 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  181 (240)
                      ||...++|+.||.+|..|.....   +.++.++++.+.++++.+++......++...|++++|++-+++++....     
T Consensus       112 FQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLM  188 (386)
T COG4175         112 FQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLM  188 (386)
T ss_pred             hhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEe
Confidence            99999999999999998865432   5677888999999999999999999999999999999999888775421     


Q ss_pred             -------------------------ccce---eeccceeEEeCCcEEEEEc
Q psy310          182 -------------------------HEKT---ILKSVSGRLRSGELTAIMG  204 (240)
Q Consensus       182 -------------------------~~~~---il~~vsl~I~~Ge~valvG  204 (240)
                                               -.|+   |=+|++=.++=|+.+||+-
T Consensus       189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimk  239 (386)
T COG4175         189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMK  239 (386)
T ss_pred             cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEec
Confidence                                     1223   2377777788899999984

>KOG0061|consensus

Probab=99.85  E-value=2e-20  Score=180.00  Aligned_cols=153  Identities=35%  Similarity=0.545  Sum_probs=134.4

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      ..+.+|++||..+++||+.||+||+||||||||++|+|....  ..+|+|.++|+....+.+++..+||.||+.+++.+|
T Consensus        41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT  120 (613)
T KOG0061|consen   41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT  120 (613)
T ss_pred             ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence            358899999999999999999999999999999999997543  479999999988877888999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC-----CCCCchhhHHHHHHHHhcccccceeecccee
Q psy310          118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS-----GPWGTFESSVLLALAMYNRIHEKTILKSVSG  192 (240)
Q Consensus       118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl  192 (240)
                      |+|.+.+.+.++++..+.+.++++++++++..+++.+.++..+.     +.++++++|+.++.++...            
T Consensus       121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~------------  188 (613)
T KOG0061|consen  121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTD------------  188 (613)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcC------------
Confidence            99999999988888777888889999999999998876666554     5788999999999999876            


Q ss_pred             EEeCCcEEEEEcCCCCC
Q psy310          193 RLRSGELTAIMGPSGAG  209 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsG  209 (240)
                           ..+.++.++.||
T Consensus       189 -----P~iLflDEPTSG  200 (613)
T KOG0061|consen  189 -----PSILFLDEPTSG  200 (613)
T ss_pred             -----CCEEEecCCCCC
Confidence                 467777777775

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3e-20  Score=160.34  Aligned_cols=147  Identities=20%  Similarity=0.214  Sum_probs=108.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+..  +  |++|+|.++|.++..     ...++.
T Consensus         8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   87 (251)
T PRK14244          8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAK   87 (251)
T ss_pred             eeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhh
Confidence            3577888888899999999999999999999999999999999999743  2  469999999976421     134667


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++. ++.+++.+..... ..........+.+..+++.+++.+    .........++++++++.+++++.
T Consensus        88 i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         88 VGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             EEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            9999999887775 8999887653221 111112223344566677777643    223344567888999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       166 ~~  167 (251)
T PRK14244        166 VK  167 (251)
T ss_pred             cC
Confidence            64

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.1e-20  Score=160.48  Aligned_cols=145  Identities=19%  Similarity=0.187  Sum_probs=106.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      .|+++.++++.+|+++||+|++||+++|+||||||||||+++|+|+..+ |   ++|+|.++|.++..     ...++.+
T Consensus        10 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   89 (253)
T PRK14261         10 KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI   89 (253)
T ss_pred             eeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence            5778888888999999999999999999999999999999999997432 2   48999999987532     2345678


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++ .++.+++.+.....  ...........+.++++.+++.    ..........++++++++.++++++.
T Consensus        90 ~~~~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  166 (253)
T PRK14261         90 GMVFQRPNPFP-KSIYENVAYGPRIH--GEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV  166 (253)
T ss_pred             EEEecCCccCc-ccHHHHHHhhHHhc--CCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence            99999998877 49999998754322  1111222233444555555442    22334455678889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       167 ~  167 (253)
T PRK14261        167 N  167 (253)
T ss_pred             C
Confidence            5

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.5e-20  Score=160.40  Aligned_cols=142  Identities=27%  Similarity=0.387  Sum_probs=110.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      .|+++.++...  .++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+... ...++.++|++|++.
T Consensus         5 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   81 (232)
T PRK10771          5 TDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF-LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN   81 (232)
T ss_pred             EEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCeecCcCChhhccEEEEecccc
Confidence            46777776543  389999999999999999999999999999997 56789999999986532 123457899999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.|++.+......  ... ....+.+.++++.+++.+.....+...|+++++++.+++++...
T Consensus        82 ~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  147 (232)
T PRK10771         82 LFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE  147 (232)
T ss_pred             cccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            8888999999875421111  111 12344567788888887777777778899999999999999875

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.7e-20  Score=159.69  Aligned_cols=145  Identities=20%  Similarity=0.196  Sum_probs=107.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC--CCC--CccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--TSG--TEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~--~~~--~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.  .++  ++|+|.++|.++..     ...++.+
T Consensus         7 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14245          7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNV   86 (250)
T ss_pred             EEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhhe
Confidence            57888888889999999999999999999999999999999999962  233  58999999987532     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.++. .++.+++.+.....  .........+.+.++++.+++.+    .........++++++++.++++++.
T Consensus        87 ~~v~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14245         87 GMVFQRPNPFP-KSIFENVAYGLRVN--GVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV  163 (250)
T ss_pred             EEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            99999988776 69999987643221  11112223344566666666532    3344455678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       164 ~  164 (250)
T PRK14245        164 S  164 (250)
T ss_pred             C
Confidence            5

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.5e-20  Score=159.84  Aligned_cols=146  Identities=18%  Similarity=0.258  Sum_probs=107.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      +|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+.    ++|+|.++|.+...     ...+..+
T Consensus         8 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   87 (252)
T PRK14272          8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV   87 (252)
T ss_pred             eeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence            57788888889999999999999999999999999999999999975432    38999999976531     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++.+++.+++.+..... . ........+.+..++..+++    .+.........|+++++++.+++++..
T Consensus        88 ~~~~q~~~~~~~~t~~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  165 (252)
T PRK14272         88 GMVFQKPNPFPTMSVFDNVVAGLKLA-G-IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV  165 (252)
T ss_pred             EEEeccCccCcCCCHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            99999999888899999987643221 1 11122223344444444332    223344456678899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       166 ~  166 (252)
T PRK14272        166 E  166 (252)
T ss_pred             C
Confidence            5

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.84  E-value=5.3e-20  Score=159.49  Aligned_cols=146  Identities=16%  Similarity=0.174  Sum_probs=108.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc-----CCc---hh----h
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNL---SQ----F   99 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~-----~~~---~~----~   99 (240)
                      -+|+++.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+     ...   ..    .
T Consensus         9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~   87 (258)
T PRK11701          9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-LAPDAGEVHYRMRDGQLRDLYALSEAERRRLL   87 (258)
T ss_pred             EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCEEEECCccccccccccCCHHHHHHHh
Confidence            46888888888999999999999999999999999999999999997 56789999999976     321   11    1


Q ss_pred             hhhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHH
Q psy310          100 RKLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       100 ~~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      +..++|++|++.  +...+++.+++....... .. .........+.++++.+++.+ .........++++++++.++++
T Consensus        88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara  165 (258)
T PRK11701         88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GA-RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN  165 (258)
T ss_pred             hcceEEEeeCcccccCccccHHHHHHHHHHHh-cc-CcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence            346899999974  455678888775432111 11 111223445666777777753 4455566788899999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +...
T Consensus       166 l~~~  169 (258)
T PRK11701        166 LVTH  169 (258)
T ss_pred             HhcC
Confidence            9865

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.84  E-value=2.9e-20  Score=154.74  Aligned_cols=137  Identities=17%  Similarity=0.184  Sum_probs=105.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.++.+.+++ +||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+.... ..+.++|++|++.+
T Consensus         5 ~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~   81 (195)
T PRK13541          5 HQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI-MQPSSGNIYYKNCNINNI-AKPYCTYIGHNLGL   81 (195)
T ss_pred             EEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCcccChh-hhhhEEeccCCcCC
Confidence            46677777777776 9999999999999999999999999999997 568899999999765321 13458999999888


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +...++.+++.+.....   .     ..+.+.++++.+++.+.........++++++++.+++++...
T Consensus        82 ~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~  141 (195)
T PRK13541         82 KLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQ  141 (195)
T ss_pred             CccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence            88899999987643221   1     122345556666666555555666788999999999999875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=162.93  Aligned_cols=147  Identities=20%  Similarity=0.236  Sum_probs=108.8

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRK  101 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~  101 (240)
                      .-+|+.+.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+..  +  |++|+|.++|.++..     ...++
T Consensus        41 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~  120 (286)
T PRK14275         41 VAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK  120 (286)
T ss_pred             EEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence            34678888888889999999999999999999999999999999999732  3  489999999976421     12456


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.+++. ++.|++.+..... . ........+.+..+++.+++    .+.........+++++|++.+++++
T Consensus       121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL  197 (286)
T PRK14275        121 KIGMVFQKPNPFPK-SIFDNIAYGPRLH-G-INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL  197 (286)
T ss_pred             cEEEECCCCCCCcc-CHHHHHHhHHHhc-C-CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence            79999999988764 9999998753221 1 11122223344555555544    2333445566888999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       198 ~~~  200 (286)
T PRK14275        198 AVE  200 (286)
T ss_pred             hcC
Confidence            875

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.8e-20  Score=161.16  Aligned_cols=147  Identities=22%  Similarity=0.240  Sum_probs=108.7

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRK  101 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~  101 (240)
                      +-+|+++.++++++|+++||+|++||+++|+|+||||||||+++|+|++.+    |++|+|.++|.++..     ...++
T Consensus        27 ~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~  106 (272)
T PRK14236         27 EVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR  106 (272)
T ss_pred             EEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence            346888888888999999999999999999999999999999999998553    479999999987531     23467


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.+++. ++.+++.+..... . .......++.+.++++.+++.    +.........++++++++.+++++
T Consensus       107 ~i~~v~q~~~l~~~-tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  183 (272)
T PRK14236        107 RVGMVFQRPNPFPK-SIYENVVYGLRLQ-G-INNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI  183 (272)
T ss_pred             cEEEEecCCccCcc-cHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence            89999999888775 9999987653221 1 111122233445555555543    223334456788899999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       184 ~~~  186 (272)
T PRK14236        184 AIE  186 (272)
T ss_pred             HCC
Confidence            875

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.84  E-value=2.8e-20  Score=179.63  Aligned_cols=142  Identities=30%  Similarity=0.454  Sum_probs=116.8

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCchhhhhhceEEcccccccccc
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNLSQFRKLSCYIMQDNQLHANL  116 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~l  116 (240)
                      .+++++|+++|++|++||+++|+|||||||||||++|+|...+.  .+|+|.++|.+......++.++||+|++.+++.+
T Consensus        35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence            44688999999999999999999999999999999999974432  3799999998876556778899999999999999


Q ss_pred             cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC------CCCCchhhHHHHHHHHhcc
Q psy310          117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS------GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||+|++.+...++......+...++.++++++.+++.+..+..+.      +.++++++++.++++++..
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~  184 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD  184 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence            999999987665544444555566678888888887765544433      5788999999999999875

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4.8e-20  Score=160.69  Aligned_cols=146  Identities=17%  Similarity=0.206  Sum_probs=107.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -.|+++.++++.+|+++||+|.+||+++|+|+|||||||||++|+|+..  +  |++|+|.++|.+...     ...++.
T Consensus        24 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~  103 (268)
T PRK14248         24 VKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRRE  103 (268)
T ss_pred             EEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhcc
Confidence            4678888888899999999999999999999999999999999999632  2  579999999987531     134567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++. ++.+++.+.....  .........+.+..++..+++.    +.........|+++++++.++++++
T Consensus       104 i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~  180 (268)
T PRK14248        104 IGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA  180 (268)
T ss_pred             EEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            9999999987764 9999987643221  1111112233344455555442    3334455668889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       181 ~~  182 (268)
T PRK14248        181 MK  182 (268)
T ss_pred             CC
Confidence            75

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.84  E-value=6.3e-20  Score=164.74  Aligned_cols=147  Identities=24%  Similarity=0.298  Sum_probs=109.7

Q ss_pred             CCCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCCc---hh---h
Q psy310           32 NTNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERNL---SQ---F   99 (240)
Q Consensus        32 ~~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~~---~~---~   99 (240)
                      -+|+.+.+.    ...+|++|||+|++||+++|+|+||||||||+++|+|++.+.  .+|+|.++|.++..   ..   +
T Consensus        15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~   94 (330)
T PRK09473         15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL   94 (330)
T ss_pred             EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence            346666663    357999999999999999999999999999999999985432  38999999987632   11   2


Q ss_pred             h-hhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhHHHH
Q psy310          100 R-KLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESSVLL  173 (240)
Q Consensus       100 ~-~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~  173 (240)
                      + +.++||||++  .+.+.+++.+++........  ........+.+.++++.+++.+.   ...+....|+++.|++.+
T Consensus        95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I  172 (330)
T PRK09473         95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI  172 (330)
T ss_pred             hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence            2 4799999998  57788899888765433221  23334445566777887777542   234566788999999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++++...
T Consensus       173 ArAL~~~  179 (330)
T PRK09473        173 AMALLCR  179 (330)
T ss_pred             HHHHHcC
Confidence            9999875

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.84  E-value=7.6e-20  Score=159.63  Aligned_cols=145  Identities=28%  Similarity=0.310  Sum_probs=109.3

Q ss_pred             CCceecCC---------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------h
Q psy310           33 TNNNCEPN---------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------S   97 (240)
Q Consensus        33 ~~~~~~~~---------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~   97 (240)
                      +|+.+.++         ++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+...      .
T Consensus         7 ~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~sG~i~~~g~~~~~~~~~~~~   85 (268)
T PRK10419          7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-ESPSQGNVSWRGEPLAKLNRAQRK   85 (268)
T ss_pred             eceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEeccccChhHHH
Confidence            46666665         47899999999999999999999999999999999997 56789999999986531      1


Q ss_pred             hhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHH
Q psy310           98 QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLA  174 (240)
Q Consensus        98 ~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      ..++.++|++|++  .+.+..++.+++.+......  ..........+++++..+++. ..........++++++++.++
T Consensus        86 ~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la  163 (268)
T PRK10419         86 AFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA  163 (268)
T ss_pred             HHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence            2456799999997  35567888888765322111  122233344567777777775 345556667888999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       164 ral~~~  169 (268)
T PRK10419        164 RALAVE  169 (268)
T ss_pred             HHHhcC
Confidence            999875

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.2e-20  Score=165.30  Aligned_cols=148  Identities=20%  Similarity=0.160  Sum_probs=107.8

Q ss_pred             CCceecC----CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---CCccEEEECCccCCc---hhh---
Q psy310           33 TNNNCEP----NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS---GTEGSITINGHERNL---SQF---   99 (240)
Q Consensus        33 ~~~~~~~----~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~---~~~G~V~v~g~~~~~---~~~---   99 (240)
                      .|+.+.|    +...+|++|||+|.+||+++|+|+||||||||+++|+|++.+   +++|+|.++|.++..   ...   
T Consensus         7 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   86 (330)
T PRK15093          7 RNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL   86 (330)
T ss_pred             eeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHH
Confidence            3555565    446799999999999999999999999999999999998542   478999999987531   111   


Q ss_pred             -hhhceEEccccc--ccccccHHHHHHHHHHHh-cCCC--ccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhH
Q psy310          100 -RKLSCYIMQDNQ--LHANLTVEEAMNVATALK-LGKD--LTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESS  170 (240)
Q Consensus       100 -~~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~-~~~~--l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~  170 (240)
                       ++.++||||++.  +.+.+++.+++....... ....  .......+.+.++++.+++.+.   ...+....|++++|+
T Consensus        87 ~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QR  166 (330)
T PRK15093         87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQK  166 (330)
T ss_pred             hCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence             246999999986  567788888876432111 1000  0112234566778888888643   345666788999999


Q ss_pred             HHHHHHHhcc
Q psy310          171 VLLALAMYNR  180 (240)
Q Consensus       171 ~~~~~~~~~~  180 (240)
                      +.+++++...
T Consensus       167 v~iArAL~~~  176 (330)
T PRK15093        167 VMIAIALANQ  176 (330)
T ss_pred             HHHHHHHHCC
Confidence            9999999875

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.84  E-value=4.4e-20  Score=157.57  Aligned_cols=132  Identities=29%  Similarity=0.382  Sum_probs=103.3

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      |+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+....  ....+|++|++.+++.+++.+++.+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-AQPTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence            5789999999999999999999999999999997 567899999999765321  1235899999998888999999876


Q ss_pred             HHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          125 ATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       125 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ...... .........+.+.++++.+++.+.........|+++++++.+++++...
T Consensus        78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  132 (230)
T TIGR01184        78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIR  132 (230)
T ss_pred             HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcC
Confidence            522111 1223333345567788888887766666777899999999999999875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.84  E-value=8e-21  Score=162.05  Aligned_cols=141  Identities=23%  Similarity=0.314  Sum_probs=100.5

Q ss_pred             CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .|+.+.++++  ++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|++
T Consensus         4 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (234)
T cd03251           4 KNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF-YDVDSGRILIDGHDVRDYTLASLRRQIGLVS   82 (234)
T ss_pred             EEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-ccCCCCEEEECCEEhhhCCHHHHHhhEEEeC
Confidence            4566777665  799999999999999999999999999999999997 5678999999997642   223456799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHH-----HHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKD-----VVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~-----~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++ .++.|++.+...     .........     .+.++++.+  ++.+.........++++++++.++++++..
T Consensus        83 q~~~~~~-~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  156 (234)
T cd03251          83 QDVFLFN-DTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD  156 (234)
T ss_pred             CCCeecc-ccHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            9998775 699998865311     011111111     122233322  233333334456788899999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=6.3e-20  Score=158.37  Aligned_cols=146  Identities=21%  Similarity=0.257  Sum_probs=106.0

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CC---CccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SG---TEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~---~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -+|+.+.++.+.+|+++||+|.+||+++|+|+|||||||||++|+|+.. .|   .+|+|.++|.+..     ....++.
T Consensus         8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   87 (252)
T PRK14255          8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ   87 (252)
T ss_pred             EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence            3578888888899999999999999999999999999999999999743 13   4899999997652     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++ .++.+++.+..... . ........+.+...++.+++    .+.........++++++++.++++++
T Consensus        88 i~~~~q~~~~~~-~tv~~nl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~  164 (252)
T PRK14255         88 VGMVFQQPNPFP-FSIYENVIYGLRLA-G-VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA  164 (252)
T ss_pred             EEEEECCCccCC-CcHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence            999999998877 69999987653221 1 01111122233444444443    23334455667889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       165 ~~  166 (252)
T PRK14255        165 VK  166 (252)
T ss_pred             cC
Confidence            75

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.4e-20  Score=158.81  Aligned_cols=145  Identities=21%  Similarity=0.249  Sum_probs=107.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC------ccCC---chhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------HERN---LSQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g------~~~~---~~~~~~~~  103 (240)
                      .|+.+.++.+++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|++|+|.++|      .+..   ....+..+
T Consensus        14 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i   92 (257)
T PRK14246         14 SRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV   92 (257)
T ss_pred             eeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence            5788889999999999999999999999999999999999999997 556776666554      4331   12345678


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.+++.+++.+++.+.....  ....+....+.+..+++.+++.    +.........+.++++++.++++++.
T Consensus        93 ~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~  170 (257)
T PRK14246         93 GMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL  170 (257)
T ss_pred             EEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence            99999999888899999998753221  1112223334455666666653    22334455678889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       171 ~  171 (257)
T PRK14246        171 K  171 (257)
T ss_pred             C
Confidence            5

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.84  E-value=4.2e-20  Score=153.60  Aligned_cols=92  Identities=40%  Similarity=0.628  Sum_probs=78.3

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceEEc
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      +|+.+.++.    +++|+++||+|++||+++|+|||||||||||++|+|++. ++++|+|.++|.+.. ...++.++|++
T Consensus         7 ~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~   85 (192)
T cd03232           7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVE   85 (192)
T ss_pred             eeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEec
Confidence            456666653    679999999999999999999999999999999999743 478999999998764 44567799999


Q ss_pred             ccccccccccHHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVA  125 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~  125 (240)
                      |++.+++.+++.+++.+.
T Consensus        86 q~~~~~~~~tv~~~l~~~  103 (192)
T cd03232          86 QQDVHSPNLTVREALRFS  103 (192)
T ss_pred             ccCccccCCcHHHHHHHH
Confidence            999888889999998753

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=6.1e-21  Score=153.44  Aligned_cols=141  Identities=24%  Similarity=0.332  Sum_probs=112.1

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +-+++-+..++.++|+++||+|.+||+++|+||||||||||+|+++-+ .+|++|++.+.|.++.   ...+|..++|+.
T Consensus         5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~   83 (223)
T COG4619           5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-ISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA   83 (223)
T ss_pred             HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-cCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence            346778888999999999999999999999999999999999999997 6789999999999864   467889999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHHHHHHh
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |.|.++.. ||++|+.|...++..+ .    ....+..++.++++.+.. .......+++++|++.+++.+.
T Consensus        84 Q~paLfg~-tVeDNlifP~~~r~rr-~----dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq  149 (223)
T COG4619          84 QTPALFGD-TVEDNLIFPWQIRNRR-P----DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ  149 (223)
T ss_pred             cCcccccc-chhhccccchHHhccC-C----ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence            99998865 8999999876654322 1    233455577777766542 2233456788899988877664

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.84  E-value=3.8e-20  Score=155.11  Aligned_cols=122  Identities=29%  Similarity=0.408  Sum_probs=95.9

Q ss_pred             CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCc--hhhhhhce
Q psy310           33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNL--SQFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~--~~~~~~~g  104 (240)
                      +|+++.+.    ++.+|+++||+|++||+++|+||||||||||+++|+|++.+  +++|+|.++|.+...  ...++.++
T Consensus         7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~   86 (202)
T cd03233           7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEII   86 (202)
T ss_pred             EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEE
Confidence            45666663    66899999999999999999999999999999999998543  789999999987532  23456789


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++|++.+++.+++.+++.+.....                          ........+.++++++.++++++..
T Consensus        87 ~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~  136 (202)
T cd03233          87 YVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSR  136 (202)
T ss_pred             EEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence            9999998888899999987542110                          1123344678888999999998875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=4e-20  Score=161.01  Aligned_cols=145  Identities=17%  Similarity=0.196  Sum_probs=106.2

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhh
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRK  101 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~  101 (240)
                      .-.|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|++.+    +++|+|.++|.++.     ....++
T Consensus        12 ~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~   91 (264)
T PRK14243         12 RTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR   91 (264)
T ss_pred             EEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence            357888888888999999999999999999999999999999999997432    37899999997652     223456


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.+++ .++.+++.+.....   .... ...+.+..++...++.    +.........++++++++.+++++
T Consensus        92 ~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral  166 (264)
T PRK14243         92 RIGMVFQKPNPFP-KSIYDNIAYGARIN---GYKG-DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI  166 (264)
T ss_pred             hEEEEccCCcccc-ccHHHHHHhhhhhc---Ccch-HHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence            7999999988776 49999987643221   1111 1223334444444432    223344556788999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       167 ~~~  169 (264)
T PRK14243        167 AVQ  169 (264)
T ss_pred             hcC
Confidence            875

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.83  E-value=1e-20  Score=153.92  Aligned_cols=141  Identities=26%  Similarity=0.378  Sum_probs=113.4

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEcccccc
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQL  112 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~~  112 (240)
                      ++...|+..+.  ..+++|.+||+++|+|||||||||||++|+|+ ..|.+|+|.++|.+... .+..+-++++||+..+
T Consensus         6 ~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF-~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNL   82 (231)
T COG3840           6 DVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPASGEILINGVDHTASPPAERPVSMLFQENNL   82 (231)
T ss_pred             ceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhc-cCCCCceEEEcCeecCcCCcccCChhhhhhcccc
Confidence            45566666544  46788999999999999999999999999998 66889999999998743 3456778999999999


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++||++|+.+...  .+-.+.. ..++.++.+..++++.....+.+...+++++|++.+++.++..
T Consensus        83 FaHLtV~qNigLGl~--P~LkL~a-~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~  147 (231)
T COG3840          83 FAHLTVAQNIGLGLS--PGLKLNA-EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE  147 (231)
T ss_pred             chhhhhhhhhcccCC--cccccCH-HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence            999999999876422  1112233 3355677788889999999999889999999999999888753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.83  E-value=2.9e-20  Score=145.56  Aligned_cols=119  Identities=34%  Similarity=0.465  Sum_probs=94.5

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccHHHH
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVEEA  121 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv~e~  121 (240)
                      |+++||+|++||+++|+|+||||||||+++|+|. .++.+|.|.+++.+...   ...+..++|++|++.++..+++.++
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL-LPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS-SHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999999999999997 55789999999987654   4567889999999999999999887


Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310          122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL----SGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .                ....+..++..++..+.....+    ...+.++++++.+++++...
T Consensus        80 ~----------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~  126 (137)
T PF00005_consen   80 E----------------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKN  126 (137)
T ss_dssp             H----------------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTT
T ss_pred             c----------------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcC
Confidence            1                1222344444445444333333    66788899999999998765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.83  E-value=1.4e-20  Score=160.94  Aligned_cols=141  Identities=19%  Similarity=0.316  Sum_probs=99.5

Q ss_pred             CCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+.+.++  .+++|+++||+|.+||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus         4 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (237)
T cd03252           4 EHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-YVPENGRVLVDGHDLALADPAWLRRQVGVVL   82 (237)
T ss_pred             EEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence            45667765  36799999999999999999999999999999999997 5678999999997652   123456799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++. .|+.+++.+...     ..........     +..++..+  ++...........|++++|++.++++++..
T Consensus        83 q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  156 (237)
T cd03252          83 QENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN  156 (237)
T ss_pred             CCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence            9987764 699998865211     1111111111     11222222  223333344556788999999999999874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.83  E-value=3.7e-20  Score=151.41  Aligned_cols=90  Identities=30%  Similarity=0.505  Sum_probs=77.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...  ...++.++|++|++
T Consensus         4 ~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~   82 (173)
T cd03230           4 RNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP   82 (173)
T ss_pred             EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEEcccchHhhhccEEEEecCC
Confidence            4677777777899999999999999999999999999999999997 56789999999976532  23456799999999


Q ss_pred             cccccccHHHHHH
Q psy310          111 QLHANLTVEEAMN  123 (240)
Q Consensus       111 ~~~~~ltv~e~l~  123 (240)
                      .+++.+++.+++.
T Consensus        83 ~~~~~~tv~~~~~   95 (173)
T cd03230          83 SLYENLTVRENLK   95 (173)
T ss_pred             ccccCCcHHHHhh
Confidence            8888889988764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=8.5e-20  Score=157.56  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=106.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-----ccEEEECCccCCc-----hhhhhh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-----EGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-----~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      +|+.+.++++.+|+++||+|.+||+++|+||||||||||+++|+|++. |.     +|+|.++|.+...     ...++.
T Consensus         8 ~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~   86 (251)
T PRK14249          8 RGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKR   86 (251)
T ss_pred             EEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhce
Confidence            577888888889999999999999999999999999999999999844 44     6999999976531     234677


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.+++. ++.+++.+..... .. .......+.+..++..+++.    +.........++++++++.++++++
T Consensus        87 i~~v~q~~~~~~~-tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  163 (251)
T PRK14249         87 VGMVFQQPNPFPK-SIFDNVAFGPRML-GT-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA  163 (251)
T ss_pred             EEEEecCCccCcC-cHHHHHhhHHHhc-CC-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            9999999988764 9999988654321 11 11112233344455544432    2334455667889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       164 ~~  165 (251)
T PRK14249        164 IE  165 (251)
T ss_pred             cC
Confidence            65

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.1e-20  Score=159.28  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      ++..+.++.+++|+++||+|++||+++|+|+||||||||+++|+|++.+    +.+|+|.++|.+...     ...++.+
T Consensus        12 ~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   91 (261)
T PRK14263         12 KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYI   91 (261)
T ss_pred             EeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhce
Confidence            3456777888999999999999999999999999999999999998553    379999999987531     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch----hhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH----AQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.++ .+++.+++.+......   .. ....+.+..+++..++.+    .........+.++++++.+++++..
T Consensus        92 ~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~  166 (261)
T PRK14263         92 GMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT  166 (261)
T ss_pred             EEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            9999999877 5899999976543221   11 122334555666666532    1223344578889999999999986


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       167 ~  167 (261)
T PRK14263        167 E  167 (261)
T ss_pred             C
Confidence            4

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.83  E-value=1.5e-20  Score=159.93  Aligned_cols=141  Identities=24%  Similarity=0.343  Sum_probs=99.2

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      +|+.+.+++ +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+..   ....++.++|++|
T Consensus         6 ~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   84 (229)
T cd03254           6 ENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ   84 (229)
T ss_pred             EEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence            467777764 5799999999999999999999999999999999997 5678999999997642   2234567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.++.. ++.+++.+...     ........+.     +..+++.+  ++...........++++++++.++++++..
T Consensus        85 ~~~~~~~-tv~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~  157 (229)
T cd03254          85 DTFLFSG-TIMENIRLGRP-----NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD  157 (229)
T ss_pred             Cchhhhh-HHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            9987764 88888764311     1111111111     11122221  222222333456788899999999999875

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.2e-20  Score=161.54  Aligned_cols=147  Identities=22%  Similarity=0.316  Sum_probs=105.6

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      .|+.+.++ ++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......+..++|++|++.
T Consensus        10 ~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~   88 (272)
T PRK15056         10 NDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-VRLASGKISILGQPTRQALQKNLVAYVPQSEE   88 (272)
T ss_pred             EeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEhHHhhccceEEEeccccc
Confidence            56778874 57899999999999999999999999999999999997 56789999999977532212245899999976


Q ss_pred             ccc--cccHHHHHHHHHHHhcC-CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHA--NLTVEEAMNVATALKLG-KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~--~ltv~e~l~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +..  ..++++++.+....... .........+.+..+++.+++.+.........|+++++++.+++++...
T Consensus        89 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~  160 (272)
T PRK15056         89 VDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ  160 (272)
T ss_pred             cccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            422  23566665432110000 0011122234456677777877666666677889999999999999875

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.83  E-value=1.1e-19  Score=156.93  Aligned_cols=145  Identities=18%  Similarity=0.192  Sum_probs=106.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc-----CCc---hh----hh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-----RNL---SQ----FR  100 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~-----~~~---~~----~~  100 (240)
                      +|+++.++++.+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+     ...   ..    .+
T Consensus         7 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~   85 (253)
T TIGR02323         7 SGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-LAPDHGTATYIMRSGAELELYQLSEAERRRLMR   85 (253)
T ss_pred             eeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEEecccccccccccCCHHHHHHhhh
Confidence            5788888888899999999999999999999999999999999997 56789999999865     321   11    12


Q ss_pred             hhceEEccccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHH
Q psy310          101 KLSCYIMQDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       101 ~~~g~v~Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      +.++|++|++.  +....++.+++...... ... .........+.++++.+++.+ .........|+++++++.+++++
T Consensus        86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral  163 (253)
T TIGR02323        86 TEWGFVHQNPRDGLRMRVSAGANIGERLMA-IGA-RHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNL  163 (253)
T ss_pred             cceEEEEeCcccccCccccHHHHHHHHHHH-hcc-cchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHH
Confidence            46899999975  33456777776543211 110 011123345667788887753 45556667889999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       164 ~~~  166 (253)
T TIGR02323       164 VTR  166 (253)
T ss_pred             hcC
Confidence            875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=156.29  Aligned_cols=145  Identities=20%  Similarity=0.241  Sum_probs=107.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--C--CCccEEEECCccCCc-----hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--S--GTEGSITINGHERNL-----SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~--~~~G~V~v~g~~~~~-----~~~~~~~  103 (240)
                      +|+.+.++++++|+++||+|.+||+++|+|+|||||||||++|+|+..  +  +++|+|.++|.++..     ...++.+
T Consensus         7 ~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i   86 (250)
T PRK14266          7 ENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKV   86 (250)
T ss_pred             EeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhhe
Confidence            578888888899999999999999999999999999999999999743  2  378999999987531     2345679


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++|++.++.. ++.+++.+..... . .......++.+..+++.+++.    +.........++++++++.+++++..
T Consensus        87 ~~~~q~~~~~~~-t~~~nl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~  163 (250)
T PRK14266         87 GMVFQKPNPFPK-SIFDNVAYGLRIH-G-EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV  163 (250)
T ss_pred             EEEecCCccCcc-hHHHHHHhHHhhc-C-CCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            999999987764 9999887643211 1 112222344555566665542    22233445577889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       164 ~  164 (250)
T PRK14266        164 S  164 (250)
T ss_pred             C
Confidence            5

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.83  E-value=3.4e-20  Score=152.29  Aligned_cols=91  Identities=37%  Similarity=0.573  Sum_probs=77.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v~  107 (240)
                      +|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .++++|+|.++|.+..     ....++.++|++
T Consensus         4 ~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~   82 (178)
T cd03229           4 KNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF   82 (178)
T ss_pred             EEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEccccchhHHHHhhcEEEEe
Confidence            4567777788899999999999999999999999999999999997 5678999999997653     123457799999


Q ss_pred             ccccccccccHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNV  124 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~  124 (240)
                      |++.++...++.+++.+
T Consensus        83 q~~~~~~~~t~~~~l~~   99 (178)
T cd03229          83 QDFALFPHLTVLENIAL   99 (178)
T ss_pred             cCCccCCCCCHHHheee
Confidence            99988888899887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.83  E-value=1.8e-20  Score=159.25  Aligned_cols=144  Identities=22%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      -.|+.+.+++   .++|+++||+|.+||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|
T Consensus        14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   92 (226)
T cd03248          14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-YQPQGGQVLLDGKPISQYEHKYLHSKVSL   92 (226)
T ss_pred             EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCcEEEECCCchHHcCHHHHHhhEEE
Confidence            3566777764   4699999999999999999999999999999999997 5678999999997642   1234567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+++ .++.+++.+...  . .....   ......+..++..+  ++.+.........++++++++.+++++...
T Consensus        93 ~~q~~~l~~-~tv~~nl~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~  168 (226)
T cd03248          93 VGQEPVLFA-RSLQDNIAYGLQ--S-CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN  168 (226)
T ss_pred             EecccHHHh-hhHHHHhccccC--C-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            999998765 589888865321  0 01010   00111233445554  444444445566788999999999999875

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1e-19  Score=159.32  Aligned_cols=144  Identities=17%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~~~~  102 (240)
                      -.|+.+.++++.+|+++||+|++||+++|+|||||||||||++|+|++.+    +.+|+|.++|.+...     ...++.
T Consensus        23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~  102 (274)
T PRK14265         23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ  102 (274)
T ss_pred             EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhc
Confidence            46889999888999999999999999999999999999999999997542    258999999976521     234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc----chhhhhccCCCCCchhhHHHHHHHHh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT----NHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++|++|++.++. .++.+++.+.....   .... ...+.+..+++.+++    .+.........++++++++.+++++.
T Consensus       103 i~~v~q~~~l~~-~tv~~nl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265        103 VGMVFQRPNPFP-KSIYENIAFAPRAN---GYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             EEEEccCCcccc-ccHHHHHHhHHHhc---CchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999999988776 49999887643221   1111 112233444444443    22333445567889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       178 ~~  179 (274)
T PRK14265        178 MK  179 (274)
T ss_pred             hC
Confidence            65

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.83  E-value=1.5e-19  Score=156.36  Aligned_cols=141  Identities=19%  Similarity=0.252  Sum_probs=104.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCchhh-hhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNLSQF-RKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~~~~-~~~~g~v~  107 (240)
                      +|+.+.+ ++++|+++||+|.+||+++|+|+||||||||+++|+|+ .+|    ++|+|.++|.++..... ++.++|++
T Consensus         8 ~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~   85 (254)
T PRK10418          8 RNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIM   85 (254)
T ss_pred             eCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCCcCCEEEECCeeccccccccceEEEEe
Confidence            5777777 67899999999999999999999999999999999997 445    89999999987642222 35699999


Q ss_pred             cccc--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQ--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.  +.+..++.+++...... ..  ....  .+.+.++++.+++.+.   ........|+++++++.++++++..
T Consensus        86 q~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~  158 (254)
T PRK10418         86 QNPRSAFNPLHTMHTHARETCLA-LG--KPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE  158 (254)
T ss_pred             cCCccccCccccHHHHHHHHHHH-cC--CChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence            9974  44556777766542211 11  1111  2445667777777652   3445566788999999999999875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.3e-19  Score=175.03  Aligned_cols=146  Identities=23%  Similarity=0.198  Sum_probs=113.9

Q ss_pred             CCCceecCC-----------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----
Q psy310           32 NTNNNCEPN-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----   96 (240)
Q Consensus        32 ~~~~~~~~~-----------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----   96 (240)
                      -+|+.+.|+           .+.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.++..    
T Consensus       316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-~~p~~G~I~~~g~~i~~~~~~  394 (623)
T PRK10261        316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL-VESQGGEIIFNGQRIDTLSPG  394 (623)
T ss_pred             EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCcEEEECCEECCcCCHH
Confidence            457777775           25799999999999999999999999999999999997 56789999999976531    


Q ss_pred             --hhhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHH
Q psy310           97 --SQFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSV  171 (240)
Q Consensus        97 --~~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  171 (240)
                        ...++.++||+|++  .+.+.+++.+++.+.....  .........+.+.++++.+++. ......+...|++++|++
T Consensus       395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv  472 (623)
T PRK10261        395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI  472 (623)
T ss_pred             HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence              12345799999997  4778899999987653221  1112233445677788888885 456667788999999999


Q ss_pred             HHHHHHhcc
Q psy310          172 LLALAMYNR  180 (240)
Q Consensus       172 ~~~~~~~~~  180 (240)
                      .+++++...
T Consensus       473 ~iAraL~~~  481 (623)
T PRK10261        473 CIARALALN  481 (623)
T ss_pred             HHHHHHhcC
Confidence            999999865

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.5e-19  Score=160.59  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=109.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCC-----chhhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERN-----LSQFRKL  102 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~-----~~~~~~~  102 (240)
                      -.|+++.++++++|+++||+|.+||+++|+|+|||||||||++|+|++.+    |.+|+|.++|.++.     ....++.
T Consensus        48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~  127 (305)
T PRK14264         48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKR  127 (305)
T ss_pred             EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhc
Confidence            46889999889999999999999999999999999999999999998542    57999999997653     1234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCC---------Ccc-HHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchh
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGK---------DLT-KAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFE  168 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~---------~l~-~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~  168 (240)
                      ++|++|++.+++ .++.+++.+........         ... .....+.+..+++.+++.    +.........+++++
T Consensus       128 i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  206 (305)
T PRK14264        128 VGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQ  206 (305)
T ss_pred             eEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHH
Confidence            999999988776 59999988653221000         011 112234455666666553    233344556788999


Q ss_pred             hHHHHHHHHhcc
Q psy310          169 SSVLLALAMYNR  180 (240)
Q Consensus       169 ~~~~~~~~~~~~  180 (240)
                      +++.+++++...
T Consensus       207 qrv~LAraL~~~  218 (305)
T PRK14264        207 QRLCIARCLAVD  218 (305)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=5e-20  Score=147.56  Aligned_cols=145  Identities=24%  Similarity=0.293  Sum_probs=124.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------hhhhhhc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------SQFRKLS  103 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------~~~~~~~  103 (240)
                      +++.|-||...+|.||+|+-+.||.+.|+||||+|||||+|.|.=+ .-|.+|++.+.+....+         ..+|+.+
T Consensus         6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll-e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~v   84 (242)
T COG4161           6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL-EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNV   84 (242)
T ss_pred             cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH-hCCCCCeEEecccccccccCccHHHHHHHHHhh
Confidence            5788999999999999999999999999999999999999999865 77889999998865432         3578899


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+|||...+++.+||.|++-.+....  .++.+......+.++++++.+....++++...+++..|++.++++++..
T Consensus        85 gmvfqqy~lwphltv~enlieap~kv--~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk  159 (242)
T COG4161          85 GMVFQQYNLWPHLTVQENLIEAPCRV--LGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME  159 (242)
T ss_pred             hhhhhhhccCchhHHHHHHHhhhHHH--hCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence            99999999999999999987554322  2345566677788899999999999999888999999999999998765

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=7e-21  Score=156.62  Aligned_cols=143  Identities=24%  Similarity=0.341  Sum_probs=120.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      -.|+.+.++.+.+++++|++|++|.++++||||||||||||.+++.+ .+.++|+|.++|.++.   ...+++.++++-|
T Consensus         4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ   82 (252)
T COG4604           4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-LKKDSGEITIDGLELTSTPSKELAKKLSILKQ   82 (252)
T ss_pred             ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh-ccccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence            35889999999999999999999999999999999999999999997 6688999999998864   3457788899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      +..+...+||++.+.|.........+. .+.+..+.+.++-+.+.....+++...+++++|+..+|.-
T Consensus        83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV  149 (252)
T COG4604          83 ENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV  149 (252)
T ss_pred             hchhhheeEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence            999999999999998875433222333 3446677778888889999999999999998888777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=9.5e-20  Score=172.09  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=111.6

Q ss_pred             CCCceecC---CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhce
Q psy310           32 NTNNNCEP---NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSC  104 (240)
Q Consensus        32 ~~~~~~~~---~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g  104 (240)
                      -+|+.+.+   +++++|+++||+|++||+++|+|+||||||||+++|+|++.+|++|+|.++|.++..    ...+..++
T Consensus       262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~  341 (506)
T PRK13549        262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA  341 (506)
T ss_pred             EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE
Confidence            45677777   356799999999999999999999999999999999998543589999999976531    12245689


Q ss_pred             EEcccc---cccccccHHHHHHHHHHHhcCC--CccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          105 YIMQDN---QLHANLTVEEAMNVATALKLGK--DLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       105 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |++|++   .+++.+++.+++.+........  .......++.+..+++.+++. +.....+...|++++|++.+++++.
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~  421 (506)
T PRK13549        342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL  421 (506)
T ss_pred             EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence            999996   3667889999987643111110  012223345577788888875 4556667778999999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       422 ~~  423 (506)
T PRK13549        422 LN  423 (506)
T ss_pred             hC
Confidence            64

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=8.9e-20  Score=171.96  Aligned_cols=149  Identities=20%  Similarity=0.274  Sum_probs=111.6

Q ss_pred             CCCceecC---CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhce
Q psy310           32 NTNNNCEP---NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSC  104 (240)
Q Consensus        32 ~~~~~~~~---~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g  104 (240)
                      -+|+.+.+   +++.+|+++||+|.+||+++|+|||||||||||++|+|++.++.+|+|.++|.+...    ...++.++
T Consensus       260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~  339 (500)
T TIGR02633       260 ARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIA  339 (500)
T ss_pred             EeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCE
Confidence            45677777   356799999999999999999999999999999999998544579999999976531    22356789


Q ss_pred             EEcccc---cccccccHHHHHHHHHHHhcC--CCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHh
Q psy310          105 YIMQDN---QLHANLTVEEAMNVATALKLG--KDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       105 ~v~Q~~---~~~~~ltv~e~l~~~~~~~~~--~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |++|++   .+++.+++.+++.+.......  ........++.++++++.+++.+ .....+...|++++|++.+++++.
T Consensus       340 ~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~  419 (500)
T TIGR02633       340 MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL  419 (500)
T ss_pred             EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence            999996   477889999988764311111  01122223455677888888753 355566778999999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       420 ~~  421 (500)
T TIGR02633       420 TN  421 (500)
T ss_pred             hC
Confidence            65

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.2e-19  Score=156.03  Aligned_cols=145  Identities=23%  Similarity=0.276  Sum_probs=107.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-----CccEEEECCccCC-----chhhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-----TEGSITINGHERN-----LSQFRK  101 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-----~~G~V~v~g~~~~-----~~~~~~  101 (240)
                      -+|+.+.+++..+|+++||+|++||+++|+|+|||||||||++|+|++. +     .+|+|.++|.+..     ....++
T Consensus        10 ~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~   88 (261)
T PRK14258         10 VNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRR   88 (261)
T ss_pred             EeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhc
Confidence            3578888888889999999999999999999999999999999999854 4     3799999997642     123456


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .++|++|++.+++ .++.|++.+..... . ........+.+..+++.+++.    +.........++++++++.+++++
T Consensus        89 ~i~~~~q~~~l~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  165 (261)
T PRK14258         89 QVSMVHPKPNLFP-MSVYDNVAYGVKIV-G-WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL  165 (261)
T ss_pred             cEEEEecCCccCc-ccHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            7999999988877 89999987643221 1 012222233455566666543    233444556788999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       166 ~~~  168 (261)
T PRK14258        166 AVK  168 (261)
T ss_pred             hcC
Confidence            865

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.82  E-value=8.3e-20  Score=152.11  Aligned_cols=93  Identities=51%  Similarity=0.746  Sum_probs=78.8

Q ss_pred             CCceecCCC------ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceE
Q psy310           33 TNNNCEPNE------KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~------~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~  105 (240)
                      +|+.+.++.      +++|+++||+|++||+++|+||||||||||+++|+|+++ +|.+|+|.++|.+......++.++|
T Consensus         7 ~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~   86 (194)
T cd03213           7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGY   86 (194)
T ss_pred             EeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEE
Confidence            456666654      679999999999999999999999999999999999741 6789999999987653345677999


Q ss_pred             EcccccccccccHHHHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVA  125 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~  125 (240)
                      ++|++.+++.+++.+++.+.
T Consensus        87 ~~q~~~~~~~~t~~~~i~~~  106 (194)
T cd03213          87 VPQDDILHPTLTVRETLMFA  106 (194)
T ss_pred             ccCcccCCCCCcHHHHHHHH
Confidence            99999888889999988653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.82  E-value=9.7e-20  Score=191.64  Aligned_cols=146  Identities=19%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v  106 (240)
                      .-+|+.+.+++  +.+|+++||+|++||++||+||||||||||+|+|+|+ ..|++|+|.++|.+..  ....++.+||+
T Consensus      1939 ~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-l~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257      1939 RLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-TTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred             EEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCEECcchHHHHhhhEEEE
Confidence            34688888886  6899999999999999999999999999999999997 5688999999998763  22345679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+|++|++.+...++   +......++.++++++.+++.+..+......++++++++.+++++...
T Consensus      2018 pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257      2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred             eccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999999998654332   223334455677788888988877777788999999999999999875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.82  E-value=1.7e-19  Score=153.77  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=100.0

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCCchhh-hhhceEEccccc--ccccc
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERNLSQF-RKLSCYIMQDNQ--LHANL  116 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~~~~~-~~~~g~v~Q~~~--~~~~l  116 (240)
                      +|+++||+|++||+++|+||||||||||+++|+|++ +|    ++|+|.++|.+...... ++.++|++|++.  +.+.+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            578999999999999999999999999999999984 45    89999999987532222 357899999985  55668


Q ss_pred             cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc---hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN---HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+..... . . ......+.+.++++.+++.   +.........++++++++.++++++..
T Consensus        80 t~~~~~~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~  143 (230)
T TIGR02770        80 TMGNHAIETLRSL-G-K-LSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLE  143 (230)
T ss_pred             CHHHHHHHHHHHc-C-c-cHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcC
Confidence            8988876543221 1 1 1122344566777877776   334555566888999999999999875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.82  E-value=1.1e-19  Score=191.13  Aligned_cols=145  Identities=21%  Similarity=0.247  Sum_probs=120.0

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEc
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~  107 (240)
                      -+|+.+.++  ++.+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..  ...++.+||++
T Consensus       931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-l~PtsG~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257       931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-LPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred             EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC-CCCCceEEEECCEECcchHHHHhhcEEEEe
Confidence            457778884  57899999999999999999999999999999999997 56889999999987632  23467799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+|++|++.+...+.   +......++.++++++.+++.+.........+++++|++.+++++...
T Consensus      1010 Q~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~ 1079 (2272)
T TIGR01257      1010 QHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGD 1079 (2272)
T ss_pred             cCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999999998754332   223333455677788888988887777888999999999999999875

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.82  E-value=2e-19  Score=153.06  Aligned_cols=135  Identities=23%  Similarity=0.274  Sum_probs=102.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .|..++++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|++...         ..+...+
T Consensus        26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~p~~G~i~~~g~~~~~---------~~~~~~~   95 (224)
T cd03220          26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-YPPDSGTVTVRGRVSSL---------LGLGGGF   95 (224)
T ss_pred             hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEEchh---------hcccccC
Confidence            4667899999999999999999999999999999999999999997 56889999999976421         1112234


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+.+|+.+++.+.....   ........+.+..+++.+++.+.....+...++++++++.+++++...
T Consensus        96 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  160 (224)
T cd03220          96 NPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALE  160 (224)
T ss_pred             CCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            45689999987653321   112233344556677777776666666677889999999999999875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.82  E-value=3.5e-20  Score=158.60  Aligned_cols=141  Identities=21%  Similarity=0.257  Sum_probs=96.9

Q ss_pred             CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .|+.+.+++   +++|+++||+|++||+++|+|+|||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|+
T Consensus         4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   82 (238)
T cd03249           4 KNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-YDPTSGEILLDGVDIRDLNLRWLRSQIGLV   82 (238)
T ss_pred             EEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-CCCCCCEEEECCEehhhcCHHHHHhhEEEE
Confidence            355666643   5699999999999999999999999999999999997 5678999999997642   22334679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.+++ .++.+++.+....    . ........     +..++..+  ++...........++++++++.++++++.
T Consensus        83 ~q~~~~~~-~tv~e~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~  156 (238)
T cd03249          83 SQEPVLFD-GTIAENIRYGKPD----A-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR  156 (238)
T ss_pred             CCchhhhh-hhHHHHhhccCCC----C-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence            99988775 6898888653110    0 11111111     11111111  12222233345678889999999999986


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       157 ~  157 (238)
T cd03249         157 N  157 (238)
T ss_pred             C
Confidence            4

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.82  E-value=2.8e-19  Score=154.23  Aligned_cols=150  Identities=20%  Similarity=0.173  Sum_probs=108.7

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhhhh-hceE
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQFRK-LSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~~~-~~g~  105 (240)
                      .-.|+.+.++++.+|+++||+|++||+++|+|+||||||||+++|+|+. .+|++|+|.++|.++..   ...++ .++|
T Consensus         9 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   88 (252)
T CHL00131          9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL   88 (252)
T ss_pred             EEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE
Confidence            3467888888888999999999999999999999999999999999962 35789999999976532   11122 3678


Q ss_pred             EcccccccccccHHHHHHHHHHHhcC----CCccHHHHHHHHHHhhhcCCcch-hhhhccC-CCCCchhhHHHHHHHHhc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLG----KDLTKAARKDVVRTLFYRSDTNH-AQRCFLS-GPWGTFESSVLLALAMYN  179 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~----~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  179 (240)
                      ++|++.+++.+++.+++.+.......    ...........+.+++..+++.+ .....+. ..|+++++++.++++++.
T Consensus        89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  168 (252)
T CHL00131         89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL  168 (252)
T ss_pred             EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence            99999888888998887654221100    00111122344566777777753 3344444 478899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       169 ~  169 (252)
T CHL00131        169 D  169 (252)
T ss_pred             C
Confidence            5

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.82  E-value=4.3e-20  Score=175.13  Aligned_cols=139  Identities=27%  Similarity=0.309  Sum_probs=102.4

Q ss_pred             cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEc
Q psy310           31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIM  107 (240)
Q Consensus        31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~  107 (240)
                      .-+|++..|++ +++|+|+||+|++||+++|+||||||||||+++|.|++ +|.+|+|.++|.+..  ...+++.++||+
T Consensus       336 ~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V~  414 (529)
T TIGR02868       336 ELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVFA  414 (529)
T ss_pred             EEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence            34678888865 56999999999999999999999999999999999984 578999999997653  455678999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhc----cCCCCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCF----LSGPWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~  176 (240)
                      |++.++. .|++||+.+..     +..++++..+.++    ..++.+..       +..    -...|++++||+.+|++
T Consensus       415 Q~~~lF~-~TI~eNI~~g~-----~~~~~e~i~~al~----~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa  484 (529)
T TIGR02868       415 QDAHLFD-TTVRDNLRLGR-----PDATDEELWAALE----RVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA  484 (529)
T ss_pred             cCccccc-ccHHHHHhccC-----CCCCHHHHHHHHH----HcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence            9998875 49999998631     1223333233222    22222111       111    12367889999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +.+.
T Consensus       485 ll~~  488 (529)
T TIGR02868       485 LLAD  488 (529)
T ss_pred             HhcC
Confidence            9875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.82  E-value=5.2e-20  Score=155.62  Aligned_cols=165  Identities=24%  Similarity=0.268  Sum_probs=112.1

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .|+.+.+++  +.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus         6 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   84 (220)
T cd03245           6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-YKPTSGSVLLDGTDIRQLDPADLRRNIGYVP   84 (220)
T ss_pred             EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence            456666654  5799999999999999999999999999999999997 5678999999997642   123456789999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc-----------cCCCCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF-----------LSGPWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  176 (240)
                      |++.++. .++.|++.+..  .   ....    ..+.+++..+++.+.....           ....|+++++++.++++
T Consensus        85 q~~~~~~-~tv~e~l~~~~--~---~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a  154 (220)
T cd03245          85 QDVTLFY-GTLRDNITLGA--P---LADD----ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA  154 (220)
T ss_pred             CCCcccc-chHHHHhhcCC--C---CCCH----HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence            9998776 68888875421  1   1111    1223344444544433322           24678889999999999


Q ss_pred             HhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       177 ~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.... +-.+++...-.+...           .+-.+.++|..+
T Consensus       155 l~~~p-~llllDEPt~~LD~~-----------~~~~l~~~l~~~  186 (220)
T cd03245         155 LLNDP-PILLLDEPTSAMDMN-----------SEERLKERLRQL  186 (220)
T ss_pred             HhcCC-CEEEEeCccccCCHH-----------HHHHHHHHHHHh
Confidence            98752 233444444333222           345556666554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.82  E-value=1.5e-19  Score=187.29  Aligned_cols=147  Identities=27%  Similarity=0.396  Sum_probs=118.2

Q ss_pred             CCceecCC----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccCCchhhhhhceEE
Q psy310           33 TNNNCEPN----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHERNLSQFRKLSCYI  106 (240)
Q Consensus        33 ~~~~~~~~----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~~~~~~~~~~g~v  106 (240)
                      +|+.+.++    .+.+|++||++|++||+++|+|||||||||||++|+|+..+  +.+|+|.++|.+.. ..+++.++||
T Consensus       763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i~yv  841 (1394)
T TIGR00956       763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSIGYV  841 (1394)
T ss_pred             EeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcceeee
Confidence            55666653    56899999999999999999999999999999999997432  57899999998764 3467789999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccC----CCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLS----GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+|++|++.+...++......+....+.++++++.+++.+..+..+.    +.++++++++.+++++...
T Consensus       842 ~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~  919 (1394)
T TIGR00956       842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK  919 (1394)
T ss_pred             cccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence            9999888999999999987655433333444555677888888888776655554    5788999999999999875

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.82  E-value=2.8e-20  Score=157.58  Aligned_cols=148  Identities=24%  Similarity=0.278  Sum_probs=115.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cc-hhhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NL-SQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~-~~~~~~~g~v~  107 (240)
                      -+|+.+.++++++|+++||+|++||.++|+|||||||||||++|+|. .+|.+|.+.+.|+..   .. .++++.+|+|.
T Consensus        34 l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS  112 (257)
T COG1119          34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-HPPSSGDVTLLGRRFGKGETIFELRKRIGLVS  112 (257)
T ss_pred             ecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc-cCCCCCceeeeeeeccCCcchHHHHHHhCccC
Confidence            47899999999999999999999999999999999999999999996 667799999988754   22 67889999996


Q ss_pred             cc--ccccccccHHHHHHHHHH--HhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QD--NQLHANLTVEEAMNVATA--LKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~--~~~~~~ltv~e~l~~~~~--~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      -.  ..+....+++|.+..+..  .........+.....+..+++.+++.+...+.....|.+++++++++++++..
T Consensus       113 ~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~  189 (257)
T COG1119         113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD  189 (257)
T ss_pred             HHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence            53  223344455555442221  11111112344567788899999999998888888999999999999999876

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.82  E-value=2.4e-19  Score=169.82  Aligned_cols=144  Identities=21%  Similarity=0.222  Sum_probs=109.4

Q ss_pred             CCCceecCC-----CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC-Ccc---CC-c-----
Q psy310           32 NTNNNCEPN-----EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN-GHE---RN-L-----   96 (240)
Q Consensus        32 ~~~~~~~~~-----~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~-g~~---~~-~-----   96 (240)
                      -+|+.+.|+     .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++ |.+   .. .     
T Consensus       282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~g~~~~~~~~~~~~~~  360 (520)
T TIGR03269       282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-LEPTSGEVNVRVGDEWVDMTKPGPDGR  360 (520)
T ss_pred             EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEEecCCccccccccchhhH
Confidence            467787774     36799999999999999999999999999999999997 56789999995 532   11 1     


Q ss_pred             hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-----hhhhccCCCCCchhhHH
Q psy310           97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-----AQRCFLSGPWGTFESSV  171 (240)
Q Consensus        97 ~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~  171 (240)
                      ...++.++|++|++.+++.+++.+++.+.....    ......++.+.++++.+++.+     .....+...|++++|++
T Consensus       361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv  436 (520)
T TIGR03269       361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV  436 (520)
T ss_pred             HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence            123456899999998888899999987643211    122223345667777777754     34556667889999999


Q ss_pred             HHHHHHhcc
Q psy310          172 LLALAMYNR  180 (240)
Q Consensus       172 ~~~~~~~~~  180 (240)
                      .+++++...
T Consensus       437 ~laral~~~  445 (520)
T TIGR03269       437 ALAQVLIKE  445 (520)
T ss_pred             HHHHHHhcC
Confidence            999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.4e-19  Score=147.78  Aligned_cols=157  Identities=22%  Similarity=0.252  Sum_probs=120.5

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQD  109 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~  109 (240)
                      -+|..|+.+++.+|.++||++.+||++-|.||||||||||||+|+|+ ..|++|+|.+.+.....  ..+++..-|+-+.
T Consensus         5 a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-l~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~   83 (209)
T COG4133           5 AENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL-LRPDAGEVYWQGEPIQNVRESYHQALLYLGHQ   83 (209)
T ss_pred             hhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-cCCCCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence            35788999999999999999999999999999999999999999997 56899999999876542  2355778899999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKS  189 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~  189 (240)
                      +-+-..+|++||+.|.......  ..    ...+.+.+..+++....+......|.++++++.+++-+.... +-.||+.
T Consensus        84 ~giK~eLTa~ENL~F~~~~~~~--~~----~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~-pLWiLDE  156 (209)
T COG4133          84 PGIKTELTALENLHFWQRFHGS--GN----AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA-PLWILDE  156 (209)
T ss_pred             ccccchhhHHHHHHHHHHHhCC--Cc----hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC-CceeecC
Confidence            9999999999999987654422  11    223444556666666655555567788888888888776642 3456666


Q ss_pred             ceeEEeC
Q psy310          190 VSGRLRS  196 (240)
Q Consensus       190 vsl~I~~  196 (240)
                      +---|.+
T Consensus       157 P~taLDk  163 (209)
T COG4133         157 PFTALDK  163 (209)
T ss_pred             cccccCH
Confidence            6555444

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.82  E-value=6.3e-20  Score=156.70  Aligned_cols=141  Identities=26%  Similarity=0.302  Sum_probs=98.4

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      +|+.+.++ .+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++|
T Consensus         4 ~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   82 (236)
T cd03253           4 ENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ   82 (236)
T ss_pred             EEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence            45677774 47799999999999999999999999999999999997 5688999999997642   2234567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++ .|+.+++.+...     ..........     +...+..+  ++...........++++++++.++++++..
T Consensus        83 ~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~  155 (236)
T cd03253          83 DTVLFN-DTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN  155 (236)
T ss_pred             CChhhc-chHHHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            998775 699998865311     1111111111     11111111  122222223445778889999999999875

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.82  E-value=1.6e-19  Score=156.33  Aligned_cols=130  Identities=29%  Similarity=0.403  Sum_probs=100.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -.|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|.+|+|.+++        +..++|++|++.
T Consensus         7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~~--------~~~i~~v~q~~~   77 (251)
T PRK09544          7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-VAPDEGVIKRNG--------KLRIGYVPQKLY   77 (251)
T ss_pred             EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECC--------ccCEEEeccccc
Confidence            35788888888999999999999999999999999999999999997 567899999976        235899999987


Q ss_pred             ccccc--cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANL--TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~l--tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++..+  ++.+++.+      .....    .+.+..+++.+++.+.........|+++++++.+++++...
T Consensus        78 ~~~~l~~~~~~~~~~------~~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~  138 (251)
T PRK09544         78 LDTTLPLTVNRFLRL------RPGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNR  138 (251)
T ss_pred             cccccChhHHHHHhc------ccccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence            76553  45554322      11111    12345566777777666666667888999999999999875

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.81  E-value=2.9e-19  Score=169.60  Aligned_cols=147  Identities=20%  Similarity=0.245  Sum_probs=112.7

Q ss_pred             cCCCceecCC-----------CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---
Q psy310           31 TNTNNNCEPN-----------EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---   96 (240)
Q Consensus        31 ~~~~~~~~~~-----------~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---   96 (240)
                      .-+|+.+.|+           ++.+|+++||+|++||+++|+||||||||||+++|+|++ + .+|+|.++|.++..   
T Consensus       277 ~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~~~  354 (529)
T PRK15134        277 DVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNLNR  354 (529)
T ss_pred             cccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccccch
Confidence            4577888874           467999999999999999999999999999999999984 4 79999999976531   


Q ss_pred             h---hhhhhceEEcccc--cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhH
Q psy310           97 S---QFRKLSCYIMQDN--QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESS  170 (240)
Q Consensus        97 ~---~~~~~~g~v~Q~~--~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  170 (240)
                      .   ..++.++|++|++  .+++.+++.+++.+...... ........++.+.++++.+++. ......+...|++++|+
T Consensus       355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr  433 (529)
T PRK15134        355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR  433 (529)
T ss_pred             hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence            1   1245689999997  36778899999886532211 1122233345667788888886 34566677889999999


Q ss_pred             HHHHHHHhcc
Q psy310          171 VLLALAMYNR  180 (240)
Q Consensus       171 ~~~~~~~~~~  180 (240)
                      +.+++++...
T Consensus       434 v~la~al~~~  443 (529)
T PRK15134        434 IAIARALILK  443 (529)
T ss_pred             HHHHHHHhCC
Confidence            9999999865

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=4.4e-19  Score=154.41  Aligned_cols=146  Identities=18%  Similarity=0.202  Sum_probs=105.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C---CccEEEECCccCC-------chhhh
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G---TEGSITINGHERN-------LSQFR  100 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~---~~G~V~v~g~~~~-------~~~~~  100 (240)
                      -+|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|+..+ +   ++|+|.++|.+..       ....+
T Consensus        19 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~   98 (265)
T PRK14252         19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVR   98 (265)
T ss_pred             EEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHh
Confidence            35788888888999999999999999999999999999999999997443 2   7899999986542       12345


Q ss_pred             hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHHH
Q psy310          101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      +.++|++|++.+++. ++.+++.+..... ... ......+.+..+++.+++.    ..........+.++++++.++++
T Consensus        99 ~~i~~~~q~~~~~~~-tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  175 (265)
T PRK14252         99 MRISMVFQKPNPFPK-SIFENVAYGLRIR-GVK-RRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA  175 (265)
T ss_pred             ccEEEEccCCcCCcc-hHHHHHHhHHHHc-CCC-hHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence            678999999988875 9999987643221 100 1111223344444444432    23334455678889999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      ++..
T Consensus       176 l~~~  179 (265)
T PRK14252        176 LATD  179 (265)
T ss_pred             HHcC
Confidence            9875

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=5.2e-19  Score=158.74  Aligned_cols=160  Identities=18%  Similarity=0.167  Sum_probs=112.7

Q ss_pred             cCCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC----CCccEEEECCccCCc-----hhh
Q psy310           31 TNTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS----GTEGSITINGHERNL-----SQF   99 (240)
Q Consensus        31 ~~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~----~~~G~V~v~g~~~~~-----~~~   99 (240)
                      .-+|+++.+.  .+++|+++||+|++||++||+|+|||||||||++|+|+...    |++|+|.++|.++..     ..+
T Consensus        82 ~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l  161 (329)
T PRK14257         82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL  161 (329)
T ss_pred             EEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence            3467887774  46799999999999999999999999999999999998542    568999999988631     245


Q ss_pred             hhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc----hhhhhccCCCCCchhhHHHHHH
Q psy310          100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN----HAQRCFLSGPWGTFESSVLLAL  175 (240)
Q Consensus       100 ~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  175 (240)
                      ++.++|++|++.++. .|+++++.+.....  .........+.+..+++..++.    ..........|++++|++.+++
T Consensus       162 r~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR  238 (329)
T PRK14257        162 RTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR  238 (329)
T ss_pred             hccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence            678999999998874 79999998653221  1111222233344455554432    2223344557888999999999


Q ss_pred             HHhcccccceeeccceeEE
Q psy310          176 AMYNRIHEKTILKSVSGRL  194 (240)
Q Consensus       176 ~~~~~~~~~~il~~vsl~I  194 (240)
                      +++... +-.+|++..-.+
T Consensus       239 Al~~~p-~IlLLDEPts~L  256 (329)
T PRK14257        239 AIALEP-EVLLMDEPTSAL  256 (329)
T ss_pred             HHHhCC-CEEEEeCCcccC
Confidence            998752 333445554444

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1e-19  Score=144.11  Aligned_cols=144  Identities=25%  Similarity=0.301  Sum_probs=118.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC--CccEEEECCccCC-chhhhhhceEEcc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG--TEGSITINGHERN-LSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~--~~G~V~v~g~~~~-~~~~~~~~g~v~Q  108 (240)
                      -+|+....++..+|-++||+|.+||++.|+|||||||||||.-+.|.+.+.  .+|++.+++.++. ....++.+|++||
T Consensus         5 l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQ   84 (213)
T COG4136           5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQ   84 (213)
T ss_pred             eeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeec
Confidence            468889999999999999999999999999999999999999999975543  3899999998764 3445788999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      |+.++++++|.+|+.++..    ..++-..++..+.+.+++.++.......+...+++++.++.+.+.+..
T Consensus        85 D~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla  151 (213)
T COG4136          85 DALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA  151 (213)
T ss_pred             ccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence            9999999999999987532    233334677778888888888888777777788887777776665543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.81  E-value=4.4e-19  Score=165.76  Aligned_cols=136  Identities=26%  Similarity=0.317  Sum_probs=110.6

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEEccccc--ccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYIMQDNQ--LHA  114 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v~Q~~~--~~~  114 (240)
                      ..++++|||+|.+||++||||+||||||||+|+|+|+ .+|.+|.|.++|.+..     ....++.+-++||||.  +.+
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP  382 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL-LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP  382 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence            5789999999999999999999999999999999998 5568999999998732     2335567889999875  567


Q ss_pred             cccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          115 NLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       115 ~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+|+.+.+......+.  ......+++.+.++++.+++.. ...+++...|++++|++.+|+++...
T Consensus       383 r~tV~~~i~epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~  447 (539)
T COG1123         383 RMTVGDILAEPLRIHG--GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALE  447 (539)
T ss_pred             cccHHHHHHhHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcC
Confidence            8899998876654432  2224455667888999998876 46777888999999999999999875

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.81  E-value=4.4e-19  Score=152.58  Aligned_cols=148  Identities=20%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~  107 (240)
                      +|+.+.++++++|+++||+|++||+++|+|+||||||||+++|+|++ .+|++|+|.++|.+...   .. .+..++|++
T Consensus         5 ~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   84 (248)
T PRK09580          5 KDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF   84 (248)
T ss_pred             EEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEe
Confidence            46788888889999999999999999999999999999999999974 25789999999976521   11 224689999


Q ss_pred             ccccccccccHHHHHHHHH-HHh-cC--CCccHHHHHHHHHHhhhcCCcc-hhhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVAT-ALK-LG--KDLTKAARKDVVRTLFYRSDTN-HAQRCFLS-GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~-~~~-~~--~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.++..+...... ... ..  ..+........+..+++.+++. +....... ..|+++++++.+++++...
T Consensus        85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~  163 (248)
T PRK09580         85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE  163 (248)
T ss_pred             cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            9988777666554433211 010 00  0011112234455666666664 22333333 5788999999999999875

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.81  E-value=7.7e-20  Score=175.41  Aligned_cols=142  Identities=25%  Similarity=0.318  Sum_probs=100.8

Q ss_pred             cCCCcee-cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310           31 TNTNNNC-EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~-~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v  106 (240)
                      .-+|++. .++++++|+++||+|++||+++|+||||||||||+++|+|++  |.+|+|.++|.+.   ....+++.++||
T Consensus       351 ~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v  428 (588)
T PRK11174        351 EAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWV  428 (588)
T ss_pred             EEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEEe
Confidence            3457763 445678999999999999999999999999999999999986  5799999999865   345678899999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++. .|++||+.+..     +..++++..+.++..     +..+  +.+..-...-...|++++||+.+|++++.
T Consensus       429 ~Q~~~LF~-~TI~eNI~~g~-----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~  502 (588)
T PRK11174        429 GQNPQLPH-GTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ  502 (588)
T ss_pred             cCCCcCCC-cCHHHHhhcCC-----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence            99998875 59999998631     122333333332221     1111  11111111112367889999999998876


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       503 ~  503 (588)
T PRK11174        503 P  503 (588)
T ss_pred             C
Confidence            3

>PLN03140 ABC transporter G family member; Provisional

Probab=99.81  E-value=4.1e-19  Score=184.25  Aligned_cols=141  Identities=28%  Similarity=0.469  Sum_probs=113.5

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      +.+.+|++||++|++||+++|+|||||||||||++|+|...+ +.+|+|.++|.+.....+++.++||+|++.+++.+||
T Consensus       891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV  970 (1470)
T PLN03140        891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV  970 (1470)
T ss_pred             CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence            345799999999999999999999999999999999997432 4689999999876544456778999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc-----CCCCCchhhHHHHHHHHhcc
Q psy310          119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL-----SGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+...++...........+.++++++.+++.+..+..+     .+.++++++++.+++++...
T Consensus       971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~ 1037 (1470)
T PLN03140        971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVAN 1037 (1470)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhC
Confidence            999998765443333344445566788888888877655543     46788999999999999875

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.81  E-value=4e-19  Score=153.34  Aligned_cols=130  Identities=22%  Similarity=0.271  Sum_probs=100.8

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHHH
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEE  120 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~e  120 (240)
                      +|+++||+|++||+++|+|+||||||||+++|+|++ + .+|+|.++|.+..   ....++.++|++|++.++..+++.+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            899999999999999999999999999999999974 4 4899999998653   1233456899999988888889999


Q ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      ++.+....    ........+.+.++++.+++.+.........++++++++.+++++..
T Consensus        89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~  143 (248)
T PRK03695         89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQ  143 (248)
T ss_pred             HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            88754211    11122224456667777777766666667788899999999998874

>KOG0057|consensus

Probab=99.80  E-value=7.6e-20  Score=169.08  Aligned_cols=184  Identities=22%  Similarity=0.268  Sum_probs=125.1

Q ss_pred             CCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEc
Q psy310           32 NTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~  107 (240)
                      -.|+...++.++ +|+++||+|++||.|||+|+|||||||++|+|.+++.  ++|+|.++|.++   ....+|+.+||||
T Consensus       354 F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VP  431 (591)
T KOG0057|consen  354 FDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVP  431 (591)
T ss_pred             EEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence            357788888877 9999999999999999999999999999999999854  799999999876   3567889999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc-----------CCCCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL-----------SGPWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  176 (240)
                      ||..++. -|+.+|+.+..     .....++..+.++    +.++.+.-...+           ...+++++|++.++++
T Consensus       432 Qd~~LFn-dTIl~NI~YGn-----~sas~eeV~e~~k----~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa  501 (591)
T KOG0057|consen  432 QDSVLFN-DTILYNIKYGN-----PSASDEEVVEACK----RAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA  501 (591)
T ss_pred             Ccccccc-hhHHHHhhcCC-----CCcCHHHHHHHHH----HcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence            9998874 48888887532     1222233333333    223222211111           1256788999999888


Q ss_pred             Hhccc----------------------------ccce---eeccceeEEeCCcEEEEEcCCCC--CHHHHHHHHhCCccc
Q psy310          177 MYNRI----------------------------HEKT---ILKSVSGRLRSGELTAIMGPSGA--GKSTLLNILTGYKIL  223 (240)
Q Consensus       177 ~~~~~----------------------------~~~~---il~~vsl~I~~Ge~valvG~NGs--GKSTLlk~l~G~~~~  223 (240)
                      +.+..                            .+++   |.++.++.-+.- +|-++ +||.  .+.|.-.+|.--..|
T Consensus       502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~D-kI~~l-~nG~v~e~gth~ell~~s~~~  579 (591)
T KOG0057|consen  502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFD-KIIVL-DNGTVKEYGTHSELLAPSELY  579 (591)
T ss_pred             HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCC-EEEEE-ECCeeEEeccHHHHhhhhhHH
Confidence            76531                            1333   445555443333 34333 3444  555655666545678


Q ss_pred             chhhhc
Q psy310          224 RQLWLL  229 (240)
Q Consensus       224 ~~~~~~  229 (240)
                      ++.|..
T Consensus       580 ~~~w~~  585 (591)
T KOG0057|consen  580 ADLWTT  585 (591)
T ss_pred             HHHhcc
Confidence            889984

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.80  E-value=2.9e-19  Score=146.11  Aligned_cols=88  Identities=30%  Similarity=0.485  Sum_probs=73.3

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+.+.+++  +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus         4 ~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (173)
T cd03246           4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-LRPTSGRVRLDGADISQWDPNELGDHVGYLP   82 (173)
T ss_pred             EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCCeEEECCEEcccCCHHHHHhheEEEC
Confidence            356666654  5699999999999999999999999999999999997 5678999999997653   223456799999


Q ss_pred             ccccccccccHHHHH
Q psy310          108 QDNQLHANLTVEEAM  122 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l  122 (240)
                      |++.+++ .++.+++
T Consensus        83 q~~~~~~-~tv~~~l   96 (173)
T cd03246          83 QDDELFS-GSIAENI   96 (173)
T ss_pred             CCCcccc-CcHHHHC
Confidence            9998776 4888766

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.80  E-value=2.9e-19  Score=145.85  Aligned_cols=88  Identities=39%  Similarity=0.536  Sum_probs=73.0

Q ss_pred             CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+.+.++++  .+|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|++
T Consensus         4 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (171)
T cd03228           4 KNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-YDPTSGEILIDGVDLRDLDLESLRKNIAYVP   82 (171)
T ss_pred             EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCCEEEECCEEhhhcCHHHHHhhEEEEc
Confidence            3567777665  799999999999999999999999999999999997 5678999999997642   123456789999


Q ss_pred             ccccccccccHHHHH
Q psy310          108 QDNQLHANLTVEEAM  122 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l  122 (240)
                      |++.+++ .++.|++
T Consensus        83 ~~~~~~~-~t~~e~l   96 (171)
T cd03228          83 QDPFLFS-GTIRENI   96 (171)
T ss_pred             CCchhcc-chHHHHh
Confidence            9987665 5777765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.80  E-value=2.7e-19  Score=146.87  Aligned_cols=88  Identities=33%  Similarity=0.452  Sum_probs=72.4

Q ss_pred             CCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310           33 TNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q  108 (240)
                      .|+.+.++++  ++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...  ...++.++|++|
T Consensus         4 ~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q   82 (178)
T cd03247           4 NNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-LKPQQGEITLDGVPVSDLEKALSSLISVLNQ   82 (178)
T ss_pred             EEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCCEEEECCEEHHHHHHHHHhhEEEEcc
Confidence            3556666554  799999999999999999999999999999999997 56789999999975421  234567899999


Q ss_pred             cccccccccHHHHH
Q psy310          109 DNQLHANLTVEEAM  122 (240)
Q Consensus       109 ~~~~~~~ltv~e~l  122 (240)
                      ++.+++ .++.|++
T Consensus        83 ~~~~~~-~tv~~~i   95 (178)
T cd03247          83 RPYLFD-TTLRNNL   95 (178)
T ss_pred             CCeeec-ccHHHhh
Confidence            987764 5787765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=168.15  Aligned_cols=145  Identities=18%  Similarity=0.274  Sum_probs=107.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+.+.++  .+|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...++.++|++|
T Consensus       269 ~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q  345 (510)
T PRK09700        269 RNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE  345 (510)
T ss_pred             eCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence            35555432  489999999999999999999999999999999997 56789999999976531    123456899999


Q ss_pred             cc---cccccccHHHHHHHHHHHh---cCC--C-ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHh
Q psy310          109 DN---QLHANLTVEEAMNVATALK---LGK--D-LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       109 ~~---~~~~~ltv~e~l~~~~~~~---~~~--~-l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++   .+++.+++.+++.+.....   ...  . ......+..+.++++.+++. +.....+...|++++|++.+++++.
T Consensus       346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~  425 (510)
T PRK09700        346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC  425 (510)
T ss_pred             ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence            84   5777899999887542110   000  0 11222234567788888885 5566667788999999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       426 ~~  427 (510)
T PRK09700        426 CC  427 (510)
T ss_pred             cC
Confidence            65

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.80  E-value=6.1e-19  Score=145.32  Aligned_cols=88  Identities=26%  Similarity=0.428  Sum_probs=73.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+.+.+    +|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+...    ...++.++|++|
T Consensus         8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q   82 (182)
T cd03215           8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPE   82 (182)
T ss_pred             eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCccCHHHHHhCCeEEecC
Confidence            4556665    89999999999999999999999999999999997 56789999999977532    123567999999


Q ss_pred             cc---cccccccHHHHHHHH
Q psy310          109 DN---QLHANLTVEEAMNVA  125 (240)
Q Consensus       109 ~~---~~~~~ltv~e~l~~~  125 (240)
                      ++   .+++.+++.|++.+.
T Consensus        83 ~~~~~~~~~~~t~~e~l~~~  102 (182)
T cd03215          83 DRKREGLVLDLSVAENIALS  102 (182)
T ss_pred             CcccCcccCCCcHHHHHHHH
Confidence            85   467788999988653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.80  E-value=3.1e-19  Score=156.45  Aligned_cols=135  Identities=20%  Similarity=0.255  Sum_probs=102.2

Q ss_pred             CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+++.+  +..++|+++||+|++||+++|+|+||||||||+++|+|++ + .+|+|.++|.++.   ...+++.++|++
T Consensus         6 ~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~   83 (275)
T cd03289           6 KDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFGVIP   83 (275)
T ss_pred             EEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence            4667777  5577999999999999999999999999999999999985 4 6899999998753   234567899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-----------CCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-----------PWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  176 (240)
                      |++.+++ .|+.+++...   .   .....    .+.++++.+++.+....++.+           .+.++++++.++++
T Consensus        84 q~~~lf~-~tv~~nl~~~---~---~~~~~----~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa  152 (275)
T cd03289          84 QKVFIFS-GTFRKNLDPY---G---KWSDE----EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS  152 (275)
T ss_pred             CCcccch-hhHHHHhhhc---c---CCCHH----HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence            9999886 5999988521   1   11122    233444556665554444443           77888999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +...
T Consensus       153 ll~~  156 (275)
T cd03289         153 VLSK  156 (275)
T ss_pred             HhcC
Confidence            9875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.80  E-value=1.9e-19  Score=150.63  Aligned_cols=130  Identities=24%  Similarity=0.300  Sum_probs=93.2

Q ss_pred             CCceecCCCc-----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310           33 TNNNCEPNEK-----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~-----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      +|+.+.++.+     ++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|          .++|++
T Consensus         4 ~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-~~~~~G~i~~~g----------~i~~~~   72 (204)
T cd03250           4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-LEKLSGSVSVPG----------SIAYVS   72 (204)
T ss_pred             eEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-CCCCCCeEEEcC----------EEEEEe
Confidence            4677777764     799999999999999999999999999999999997 568899999988          489999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++ ..|+.|++.+...      .......+..+.     .+...  +............+.++++++.++++++..
T Consensus        73 q~~~l~-~~t~~enl~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~  145 (204)
T cd03250          73 QEPWIQ-NGTIRENILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD  145 (204)
T ss_pred             cCchhc-cCcHHHHhccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            999887 5699998875311      111111111111     11111  111112223445778889999999999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.80  E-value=3.5e-19  Score=150.66  Aligned_cols=146  Identities=22%  Similarity=0.226  Sum_probs=101.4

Q ss_pred             CCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+.+.+++  +++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+..   ....++.++|++
T Consensus         6 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   84 (221)
T cd03244           6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-VELSSGSILIDGVDISKIGLHDLRSRISIIP   84 (221)
T ss_pred             EEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCCEEEECCEEhHhCCHHHHhhhEEEEC
Confidence            456666653  4799999999999999999999999999999999997 5678999999997642   234467899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      |++.+++ .++.|++.+..      ......    +.+.++.+++.+.           ........+.++++++.++++
T Consensus        85 q~~~l~~-~tv~enl~~~~------~~~~~~----~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara  153 (221)
T cd03244          85 QDPVLFS-GTIRSNLDPFG------EYSDEE----LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA  153 (221)
T ss_pred             CCCcccc-chHHHHhCcCC------CCCHHH----HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence            9998765 58988875311      111111    1222222232221           123445677889999999999


Q ss_pred             Hhcccccceeeccce
Q psy310          177 MYNRIHEKTILKSVS  191 (240)
Q Consensus       177 ~~~~~~~~~il~~vs  191 (240)
                      +.... +-.++++..
T Consensus       154 l~~~p-~llllDEP~  167 (221)
T cd03244         154 LLRKS-KILVLDEAT  167 (221)
T ss_pred             HhcCC-CEEEEeCcc
Confidence            98752 233444443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.80  E-value=7e-19  Score=148.71  Aligned_cols=135  Identities=24%  Similarity=0.258  Sum_probs=95.2

Q ss_pred             CceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceE
Q psy310           34 NNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCY  105 (240)
Q Consensus        34 ~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~  105 (240)
                      |..+.++ ..++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...       ...++.++|
T Consensus         5 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   83 (218)
T cd03290           5 NGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-MQTLEGKVHWSNKNESEPSFEATRSRNRYSVAY   83 (218)
T ss_pred             eeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-CCCCCCeEEECCcccccccccccchhhcceEEE
Confidence            3445554 46799999999999999999999999999999999997 56789999999976421       123457899


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  174 (240)
                      ++|++.++ ..++.+++.+...      .......    ++.+.+++.+.           ........++++++++.++
T Consensus        84 ~~q~~~~~-~~t~~~nl~~~~~------~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03290          84 AAQKPWLL-NATVEENITFGSP------FNKQRYK----AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA  152 (218)
T ss_pred             EcCCCccc-cccHHHHHhhcCc------CCHHHHH----HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence            99999877 5799998865311      1111111    12222222111           1123455778899999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      ++++..
T Consensus       153 ral~~~  158 (218)
T cd03290         153 RALYQN  158 (218)
T ss_pred             HHHhhC
Confidence            999875

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.80  E-value=5.6e-19  Score=166.17  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=108.6

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC-CccEEEECCccCCc----hhhhhhceE
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG-TEGSITINGHERNL----SQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~-~~G~V~v~g~~~~~----~~~~~~~g~  105 (240)
                      .-+|+.+.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .++ ++|+|.++|.+...    ...++.++|
T Consensus       262 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~  340 (490)
T PRK10938        262 VLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-HPQGYSNDLTLFGRRRGSGETIWDIKKHIGY  340 (490)
T ss_pred             EEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence            357788899888899999999999999999999999999999999997 444 68999999975421    223567999


Q ss_pred             Eccccccccc--ccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHAN--LTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~--ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++|++.+...  .++++.+......  ........ ..++.++++++.+++.+ .....+...|++++|++.+++++...
T Consensus       341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~  419 (490)
T PRK10938        341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH  419 (490)
T ss_pred             ECHHHHhhcccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence            9998765432  4566655432110  00011112 22445677888888876 55666677899999999999999875

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.79  E-value=1.3e-19  Score=148.91  Aligned_cols=161  Identities=20%  Similarity=0.237  Sum_probs=128.0

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC-ccCC----chhhhhhceEE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-HERN----LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g-~~~~----~~~~~~~~g~v  106 (240)
                      -.++..+|++..+|+++||+|.+||.-+|||||||||||++.+|.|. .+|..|+|.++| .++.    ....+.-+|.-
T Consensus         8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRK   86 (249)
T COG4674           8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRK   86 (249)
T ss_pred             EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-CCCCcceEEEcCchhhccCCHHHHHHhccCcc
Confidence            35789999999999999999999999999999999999999999997 778899999999 4442    12335668999


Q ss_pred             cccccccccccHHHHHHHHHHHhcC------CCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLG------KDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~------~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||.|..++.+||+||+.++.....+      .... ...+.+++.++...++.+.........+.+++|.+.+.+-+++.
T Consensus        87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~  165 (249)
T COG4674          87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQD  165 (249)
T ss_pred             ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccC
Confidence            9999999999999999876432110      1111 23355788888888888888777777888889999888877765


Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHH
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKS  211 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKS  211 (240)
                                       .++.|+.++=+|=|
T Consensus       166 -----------------P~lLLlDEPvAGMT  179 (249)
T COG4674         166 -----------------PKLLLLDEPVAGMT  179 (249)
T ss_pred             -----------------CcEEEecCccCCCc
Confidence                             46777777777754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.3e-18  Score=151.22  Aligned_cols=137  Identities=23%  Similarity=0.307  Sum_probs=105.4

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCC----CccEEEECCccCC-c--hh----hhhhceEEcccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSG----TEGSITINGHERN-L--SQ----FRKLSCYIMQDN  110 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~----~~G~V~v~g~~~~-~--~~----~~~~~g~v~Q~~  110 (240)
                      ..++++|||+|.+||++||||+|||||||+.++|+|+++.+    .+|+|.++|.++. .  .+    ..+.++|+||+|
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            57999999999999999999999999999999999986522    4789999998652 1  11    125789999998


Q ss_pred             c--ccccccHHHHHHHHHHHhcCCCc-cHHHHHHHHHHhhhcCCcchhh---hhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 Q--LHANLTVEEAMNVATALKLGKDL-TKAARKDVVRTLFYRSDTNHAQ---RCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~--~~~~ltv~e~l~~~~~~~~~~~l-~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .  +.+.+++.+.+......+.  .. .+++..+.+.++++.+++....   ..++...|+++.||+++|.++...
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~  171 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN  171 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCC
Confidence            5  5566777776654433322  12 3445567788899999987653   556777899999999999999875

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.79  E-value=1.6e-19  Score=172.61  Aligned_cols=141  Identities=26%  Similarity=0.340  Sum_probs=105.9

Q ss_pred             cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310           31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v  106 (240)
                      .-.|++..|+ ++++|+++||+|++||++|||||||||||||+++|.++++ |.+|+|.++|.++   ....+++.+++|
T Consensus       330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V  408 (567)
T COG1132         330 EFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIV  408 (567)
T ss_pred             EEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEE
Confidence            4578999999 6899999999999999999999999999999999999854 6899999999765   456778999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcCCcchhhhhcc----CCCCCchhhHHHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRSDTNHAQRCFL----SGPWGTFESSVLLALAM  177 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  177 (240)
                      +|++.++. -|+++|+.+...     +.++++..+.++..     ...+  +...+..+    ...|++++|++.+|+++
T Consensus       409 ~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlaiARal  480 (567)
T COG1132         409 SQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAIARAL  480 (567)
T ss_pred             cccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHHHHHH
Confidence            99999987 899999986421     12333333333332     1111  11111111    23677899999999988


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       481 l~~  483 (567)
T COG1132         481 LRN  483 (567)
T ss_pred             hcC
Confidence            764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.79  E-value=2.2e-19  Score=174.42  Aligned_cols=142  Identities=23%  Similarity=0.310  Sum_probs=102.4

Q ss_pred             CCCceecCCCc--eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310           32 NTNNNCEPNEK--TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~--~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v  106 (240)
                      -+|+...|+..  ++|+|+||+|++||++||||+||||||||+|+|.|++ .|.+|+|.++|.+.   ....+|+.++||
T Consensus       474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig~V  552 (709)
T COG2274         474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVGYV  552 (709)
T ss_pred             EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence            35677777766  6999999999999999999999999999999999985 57899999999876   456789999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++ .-|++||+.+..     ...+.++..+.++..     ...+  +....-...-...|++++|++++|+++.+
T Consensus       553 ~Q~~~Lf-~gSI~eNi~l~~-----p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~  626 (709)
T COG2274         553 LQDPFLF-SGSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS  626 (709)
T ss_pred             cccchhh-cCcHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence            9999876 568999988532     122222222222211     1110  01111111223467889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       627 ~  627 (709)
T COG2274         627 K  627 (709)
T ss_pred             C
Confidence            5

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.79  E-value=8.3e-19  Score=171.21  Aligned_cols=138  Identities=25%  Similarity=0.317  Sum_probs=102.6

Q ss_pred             cCCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|++..|+  ++++|+++||+|++||+++|+|+||||||||+++|+|++ .|.+|+|.++|.+..   ...+++.++|
T Consensus       453 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~  531 (686)
T TIGR03797       453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLGV  531 (686)
T ss_pred             EEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence            3467888874  468999999999999999999999999999999999985 578999999998763   4567889999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-------h----ccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-------C----FLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~  174 (240)
                      |+|++.++. .|++||+.+..     + .+.++..+.    ++..++.+...       .    .-...|++++|++.++
T Consensus       532 v~Q~~~lf~-gTI~eNi~~~~-----~-~~~e~i~~a----l~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA  600 (686)
T TIGR03797       532 VLQNGRLMS-GSIFENIAGGA-----P-LTLDEAWEA----ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA  600 (686)
T ss_pred             EccCCccCc-ccHHHHHhcCC-----C-CCHHHHHHH----HHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            999999875 59999987531     1 222222222    22222221111       1    1123678899999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++++.
T Consensus       601 RAll~~  606 (686)
T TIGR03797       601 RALVRK  606 (686)
T ss_pred             HHHhcC
Confidence            999875

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0927|consensus

Probab=99.79  E-value=7.8e-19  Score=162.13  Aligned_cols=51  Identities=25%  Similarity=0.394  Sum_probs=45.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT   83 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~   83 (240)
                      --|....+.+..+++|++|.+.+|+++||+|+|||||||+|++|+|. ..|.
T Consensus        78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~-e~P~  128 (614)
T KOG0927|consen   78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGR-EVPI  128 (614)
T ss_pred             eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcC-CCCC
Confidence            45677888999999999999999999999999999999999999996 3343

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.79  E-value=4e-19  Score=154.09  Aligned_cols=141  Identities=18%  Similarity=0.171  Sum_probs=97.3

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+.+.++.  +.+|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|+
T Consensus        22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v  100 (257)
T cd03288          22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-VDIFDGKIVIDGIDISKLPLHTLRSRLSII  100 (257)
T ss_pred             EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-cCCCCCeEEECCEEhhhCCHHHHhhhEEEE
Confidence            3566777765  5799999999999999999999999999999999997 5678999999998653   22456779999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.+++ .++.+++....      ..........     +..++..+  ++...........+.++++++.++++++.
T Consensus       101 ~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288         101 LQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             CCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            99998765 48887664210      0011111111     11122222  22222222334567888999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       174 ~  174 (257)
T cd03288         174 K  174 (257)
T ss_pred             C
Confidence            5

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.78  E-value=1.4e-18  Score=141.33  Aligned_cols=82  Identities=27%  Similarity=0.329  Sum_probs=69.9

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++ .+++|+++||+|.+||+++|+||||||||||+++|+|+ .++.+|+|.+++.        +.++|++|++.
T Consensus         4 ~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~q~~~   74 (166)
T cd03223           4 ENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-WPWGSGRIGMPEG--------EDLLFLPQRPY   74 (166)
T ss_pred             EEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECCC--------ceEEEECCCCc
Confidence            45667774 46899999999999999999999999999999999997 5678999999773        56899999987


Q ss_pred             ccccccHHHHHHH
Q psy310          112 LHANLTVEEAMNV  124 (240)
Q Consensus       112 ~~~~ltv~e~l~~  124 (240)
                      ++ ..++.|++.+
T Consensus        75 ~~-~~tv~~nl~~   86 (166)
T cd03223          75 LP-LGTLREQLIY   86 (166)
T ss_pred             cc-cccHHHHhhc
Confidence            64 5688888764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.78  E-value=3.1e-18  Score=166.24  Aligned_cols=144  Identities=26%  Similarity=0.316  Sum_probs=113.7

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~  101 (240)
                      +|+.+.++.    +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+...   .+    .++
T Consensus         8 ~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   86 (648)
T PRK10535          8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL-DKPTSGTYRVAGQDVATLDADALAQLRRE   86 (648)
T ss_pred             eeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence            466777642    5799999999999999999999999999999999998 56789999999987532   11    145


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++|++|++.+++..++.|++.+.....   ........+.+.++++.+++.+..+......+.++++++.+++++...
T Consensus        87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         87 HFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             cEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            7899999999998999999887643221   122333445667778888887766666677889999999999999875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.78  E-value=7e-19  Score=144.75  Aligned_cols=75  Identities=32%  Similarity=0.555  Sum_probs=62.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      +|+.+.++++++|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....+..++|++|
T Consensus         3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214           3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-LKPSSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            4677888888899999999999999999999999999999999997 5678999999997653   1223445677776

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3.3e-18  Score=143.71  Aligned_cols=146  Identities=22%  Similarity=0.198  Sum_probs=108.0

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEECCccCCc----hhhhhhceE
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITINGHERNL----SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v~g~~~~~----~~~~~~~g~  105 (240)
                      +|+-++-.+ +.+|++||++|++||+.+|+||||||||||..+|+|. +  ...+|+|.++|.++..    ...+.-+..
T Consensus         7 ~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~-p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifL   85 (251)
T COG0396           7 KDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILELSPDERARAGIFL   85 (251)
T ss_pred             eeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC-CCceEecceEEECCcccccCCHhHHHhcCCEE
Confidence            456666677 5999999999999999999999999999999999996 4  2468999999998642    223456778


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCC-CccHHHHHHHHHHhhhcCCcch-hhhh-ccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGK-DLTKAARKDVVRTLFYRSDTNH-AQRC-FLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      -||.|.-++..++.+.++.+....... .+ .....+.+++.++.+++.. ...+ .-.+.|++++.+..+...+...
T Consensus        86 afQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~le  162 (251)
T COG0396          86 AFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLE  162 (251)
T ss_pred             eecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcC
Confidence            999999999999999888765432221 11 2234555666677777655 3333 3457888888888777666654

>KOG0058|consensus

Probab=99.78  E-value=3.3e-19  Score=169.48  Aligned_cols=143  Identities=21%  Similarity=0.267  Sum_probs=103.9

Q ss_pred             cCCCceecCCCc---eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310           31 TNTNNNCEPNEK---TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~~---~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g  104 (240)
                      .-+||+-+|..+   ++|+|+||+|+|||+||||||||+||||++.+|-.+|. |.+|+|.++|.++   +...+++.+|
T Consensus       467 eF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig  545 (716)
T KOG0058|consen  467 EFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIG  545 (716)
T ss_pred             EEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHee
Confidence            456888888876   49999999999999999999999999999999999865 7899999999876   3456789999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhh----ccCCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRC----FLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  177 (240)
                      +|.|+|.++. -|+.||+.+...     ..+.++....++..-.+   ..+++....    .-...+++++||+.+|+++
T Consensus       546 ~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL  619 (716)
T KOG0058|consen  546 LVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL  619 (716)
T ss_pred             eeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence            9999999875 589999986432     22333333333322111   001111111    1123578899999999998


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      .+.
T Consensus       620 lr~  622 (716)
T KOG0058|consen  620 LRN  622 (716)
T ss_pred             hcC
Confidence            763

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.78  E-value=1.3e-18  Score=145.43  Aligned_cols=90  Identities=28%  Similarity=0.355  Sum_probs=74.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hh-hhhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQ-FRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~  107 (240)
                      .|+.+.++++++|+++||+|.+||+++|+|+||||||||+++|+|+. .+|.+|+|.++|.+...   .. .+..++|++
T Consensus         4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   83 (200)
T cd03217           4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAF   83 (200)
T ss_pred             EEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEee
Confidence            46778888888999999999999999999999999999999999974 25789999999986532   11 134599999


Q ss_pred             ccccccccccHHHHH
Q psy310          108 QDNQLHANLTVEEAM  122 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l  122 (240)
                      |++.+++..++.+++
T Consensus        84 q~~~~~~~~~~~~~l   98 (200)
T cd03217          84 QYPPEIPGVKNADFL   98 (200)
T ss_pred             cChhhccCccHHHHH
Confidence            999887777776655

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.78  E-value=3.3e-19  Score=174.58  Aligned_cols=143  Identities=18%  Similarity=0.175  Sum_probs=102.8

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~  105 (240)
                      .-+|++.+|++  +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.   ....+++.++|
T Consensus       479 ~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~  557 (710)
T TIGR03796       479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVAM  557 (710)
T ss_pred             EEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence            34678888764  68999999999999999999999999999999999985 57899999999875   34567899999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++. .|++||+.+..     ...+.+...+.++..     +..+  +.+..-...-...|++++|++.++++++
T Consensus       558 v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall  631 (710)
T TIGR03796       558 VDQDIFLFE-GTVRDNLTLWD-----PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV  631 (710)
T ss_pred             EecCChhhh-ccHHHHhhCCC-----CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence            999998874 59999997521     122333333332221     1111  1111111111236788999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       632 ~~  633 (710)
T TIGR03796       632 RN  633 (710)
T ss_pred             hC
Confidence            75

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.78  E-value=5.9e-19  Score=172.78  Aligned_cols=143  Identities=20%  Similarity=0.254  Sum_probs=101.2

Q ss_pred             CCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEc
Q psy310           32 NTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~  107 (240)
                      -+|+...|+ ++++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+.   ....+++.++||+
T Consensus       476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~v~  554 (708)
T TIGR01193       476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINYLP  554 (708)
T ss_pred             EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence            357788876 468999999999999999999999999999999999985 57899999999865   3456788999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++.. |++||+.+..    ....+.+...+.++..     +..+  +.+..-...-...|++++|++.+++++++.
T Consensus       555 Q~~~lf~g-TI~eNi~l~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~  629 (708)
T TIGR01193       555 QEPYIFSG-SILENLLLGA----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD  629 (708)
T ss_pred             cCceehhH-HHHHHHhccC----CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence            99988754 9999998531    1122233222222221     1110  011100111123678899999999988764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.78  E-value=2.6e-18  Score=144.09  Aligned_cols=140  Identities=24%  Similarity=0.274  Sum_probs=100.4

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+.+.++.  .++|+++||+|++||+++|+|+|||||||||++|+|+ .+|.+|+|.++|.+..   ....++.++|+
T Consensus         9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v   87 (207)
T cd03369           9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-LEAEEGKIEIDGIDISTIPLEDLRSSLTII   87 (207)
T ss_pred             EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc-cCCCCCeEEECCEEhHHCCHHHHHhhEEEE
Confidence            3567777764  4799999999999999999999999999999999997 5678999999997642   22345679999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccccccee
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTI  186 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  186 (240)
                      +|++.+++ .++.+++.+..      ......    +.+.++   +    .......++++.+++.+++++... .+-.+
T Consensus        88 ~q~~~~~~-~tv~~~l~~~~------~~~~~~----~~~~l~---~----~~~~~~LS~G~~qrv~laral~~~-p~lll  148 (207)
T cd03369          88 PQDPTLFS-GTIRSNLDPFD------EYSDEE----IYGALR---V----SEGGLNLSQGQRQLLCLARALLKR-PRVLV  148 (207)
T ss_pred             ecCCcccC-ccHHHHhcccC------CCCHHH----HHHHhh---c----cCCCCcCCHHHHHHHHHHHHHhhC-CCEEE
Confidence            99998776 59999875311      111111    222222   1    223445678889999999999864 23334


Q ss_pred             eccce
Q psy310          187 LKSVS  191 (240)
Q Consensus       187 l~~vs  191 (240)
                      +++..
T Consensus       149 lDEP~  153 (207)
T cd03369         149 LDEAT  153 (207)
T ss_pred             EeCCc
Confidence            44444

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.78  E-value=5.6e-19  Score=167.47  Aligned_cols=149  Identities=29%  Similarity=0.336  Sum_probs=106.0

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+...|++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ...+++.++|
T Consensus       322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~I~~~g~~i~~~~~~~lr~~i~~  400 (529)
T TIGR02857       322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VDPTEGSIAVNGVPLADADADSWRDQIAW  400 (529)
T ss_pred             EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence            34577888765  4799999999999999999999999999999999998 4578999999998753   3567889999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-----------hhhccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-----------QRCFLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  174 (240)
                      |+|++.++. .|++||+.+..     ....++...+.    ++..++.+.           ....-...+++++|++.++
T Consensus       401 v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~~i~~a----~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la  470 (529)
T TIGR02857       401 VPQHPFLFA-GTIAENIRLAR-----PDASDAEIRRA----LERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA  470 (529)
T ss_pred             EcCCCcccC-cCHHHHHhccC-----CCCCHHHHHHH----HHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence            999998875 69999997531     11222222222    222222111           1111223678899999999


Q ss_pred             HHHhcccccceeeccce
Q psy310          175 LAMYNRIHEKTILKSVS  191 (240)
Q Consensus       175 ~~~~~~~~~~~il~~vs  191 (240)
                      +++.+.. +-.+||+.+
T Consensus       471 Ral~~~~-~ililDE~t  486 (529)
T TIGR02857       471 RAFLRDA-PLLLLDEPT  486 (529)
T ss_pred             HHHhcCC-CEEEEeCcc
Confidence            9998752 333444443

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.78  E-value=7.3e-19  Score=168.87  Aligned_cols=138  Identities=21%  Similarity=0.242  Sum_probs=102.7

Q ss_pred             cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .-+|++..+++ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++||
T Consensus       342 ~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~v  420 (592)
T PRK10790        342 DIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAMV  420 (592)
T ss_pred             EEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence            34677887754 67999999999999999999999999999999999985 578999999998753   45678999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----------hccCCCCCchhhHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----------CFLSGPWGTFESSVLLAL  175 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  175 (240)
                      +|++.+++. |+++|+.+..      ..+++...+    +++..++.+...           ..-...|++++|++.+++
T Consensus       421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d~~i~~----a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR  489 (592)
T PRK10790        421 QQDPVVLAD-TFLANVTLGR------DISEEQVWQ----ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR  489 (592)
T ss_pred             ccCCccccc-hHHHHHHhCC------CCCHHHHHH----HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence            999998875 9999998632      122222222    222222221111           111236778999999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      +++..
T Consensus       490 aLl~~  494 (592)
T PRK10790        490 VLVQT  494 (592)
T ss_pred             HHHhC
Confidence            99875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.78  E-value=3.1e-18  Score=161.62  Aligned_cols=137  Identities=24%  Similarity=0.339  Sum_probs=104.1

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcccc---ccccc
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDN---QLHAN  115 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~---~~~~~  115 (240)
                      .+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.++..    ...++.++|++|++   .+++.
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  344 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG  344 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence            479999999999999999999999999999999997 56789999999976531    12345699999996   46778


Q ss_pred             ccHHHHHHHHHHHhcCC---CccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          116 LTVEEAMNVATALKLGK---DLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       116 ltv~e~l~~~~~~~~~~---~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+........   ........+.++++++.+++. +.........|++++|++.+++++...
T Consensus       345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~  413 (501)
T PRK10762        345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTR  413 (501)
T ss_pred             CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhC
Confidence            99999987642111100   012223345567788888874 455666777899999999999999865

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.78  E-value=8.2e-19  Score=168.08  Aligned_cols=145  Identities=20%  Similarity=0.262  Sum_probs=102.7

Q ss_pred             ccCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           30 NTNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        30 ~~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      -.-+|++..+.+  +++|+++||+|++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.+..   ...+++.++
T Consensus       342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-YDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            344578888754  6799999999999999999999999999999999998 4578999999998753   345678899


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      ||+|++.+++ .|++||+.+..    ....+.++..+.++.+     ...+  +++......-...+++++|++.+++++
T Consensus       421 ~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal  495 (582)
T PRK11176        421 LVSQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_pred             EEccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            9999998875 69999997531    1112233333322221     1111  011100011123678899999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ++.
T Consensus       496 l~~  498 (582)
T PRK11176        496 LRD  498 (582)
T ss_pred             HhC
Confidence            875

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=1.5e-18  Score=147.01  Aligned_cols=128  Identities=22%  Similarity=0.255  Sum_probs=97.9

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      ......+|+||||+|++||++||||+||||||||||+|+|. .+|++|+|.+.|.-..+  +.-..       .+.+.+|
T Consensus        36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-~~Pt~G~v~v~G~v~~l--i~lg~-------Gf~pelT  105 (249)
T COG1134          36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-YKPTSGKVKVTGKVAPL--IELGA-------GFDPELT  105 (249)
T ss_pred             CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-cCCCCceEEEcceEehh--hhccc-------CCCcccc
Confidence            45567899999999999999999999999999999999997 56899999999965321  11112       2446789


Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      .+||+.+...+.   ++..+..++.++++.+-.++.+.....+...|.++..|+..+.+..
T Consensus       106 GreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~  163 (249)
T COG1134         106 GRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH  163 (249)
T ss_pred             hHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh
Confidence            999998765432   3456667777777777777777777777777888887777666543

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.77  E-value=6.8e-18  Score=147.18  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=96.9

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHH
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVE  119 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~  119 (240)
                      ..+++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.          +++++|.+.+.+.+++.
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-~~p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~  103 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-LSPTVGKVDRNGE----------VSVIAISAGLSGQLTGI  103 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cCCCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence            456799999999999999999999999999999999997 5678999999884          24566776666778999


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+.....   ..........+..+++..++.+.........+.++.+++.++++++..
T Consensus       104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~  161 (264)
T PRK13546        104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVN  161 (264)
T ss_pred             HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence            9887543221   122233344455566666666655556667888999999999999875

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.77  E-value=1e-18  Score=167.47  Aligned_cols=140  Identities=22%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             ccCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           30 NTNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        30 ~~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      -.-+|+++.+++  +++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+..   ...+++.++
T Consensus       339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i~  417 (574)
T PRK11160        339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAIS  417 (574)
T ss_pred             EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhhee
Confidence            345688888854  57999999999999999999999999999999999984 578999999998653   356678899


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh----------ccCCCCCchhhHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC----------FLSGPWGTFESSVLLA  174 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  174 (240)
                      ||+|++.++. .|++||+.+..     ...+.+.    +.++++..++.+....          .-...+++++|++.++
T Consensus       418 ~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~~----i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA  487 (574)
T PRK11160        418 VVSQRVHLFS-ATLRDNLLLAA-----PNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA  487 (574)
T ss_pred             EEcccchhhc-ccHHHHhhcCC-----CccCHHH----HHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence            9999998875 59999987532     1122222    2223333333222111          1123667889999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       488 Rall~~  493 (574)
T PRK11160        488 RALLHD  493 (574)
T ss_pred             HHHhcC
Confidence            987663

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.77  E-value=6.4e-19  Score=172.66  Aligned_cols=139  Identities=19%  Similarity=0.236  Sum_probs=101.3

Q ss_pred             cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      .-+|+...|++   +++|+++||+|++||+++|+||||||||||+++|.|++ +|.+|+|.++|.+..   ...+++.++
T Consensus       480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~  558 (711)
T TIGR00958       480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQVA  558 (711)
T ss_pred             EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhhce
Confidence            44678888764   57999999999999999999999999999999999985 578999999998753   355778999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLL  173 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  173 (240)
                      ||+|++.++. .|++||+.+..     ...++++..+.++    ..++.+..           ...-...+++++|++.+
T Consensus       559 ~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e~i~~al~----~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal  628 (711)
T TIGR00958       559 LVGQEPVLFS-GSVRENIAYGL-----TDTPDEEIMAAAK----AANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI  628 (711)
T ss_pred             EEecCccccc-cCHHHHHhcCC-----CCCCHHHHHHHHH----HcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence            9999998875 69999997531     1122222222222    22221111           11112367789999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++++++.
T Consensus       629 ARALl~~  635 (711)
T TIGR00958       629 ARALVRK  635 (711)
T ss_pred             HHHHhcC
Confidence            9998764

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.77  E-value=1.3e-18  Score=165.57  Aligned_cols=142  Identities=29%  Similarity=0.358  Sum_probs=101.3

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+.+.+++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ....++.++|+
T Consensus       319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v  397 (544)
T TIGR01842       319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI-WPPTSGSVRLDGADLKQWDRETFGKHIGYL  397 (544)
T ss_pred             EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence            3577777753  6899999999999999999999999999999999998 4578999999998653   34567889999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHH-----HHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV-----RTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~-----~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.+++. |++||+.+..     ...+.+...+.+     .+.++.+  +++..........+++++|++.+++++..
T Consensus       398 ~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       398 PQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             cCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            999988865 9999986321     112222222211     1222222  11221122233467889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       472 ~  472 (544)
T TIGR01842       472 D  472 (544)
T ss_pred             C
Confidence            5

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.5e-18  Score=161.29  Aligned_cols=137  Identities=16%  Similarity=0.276  Sum_probs=103.6

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEccccc---cccc
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQ---LHAN  115 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~~---~~~~  115 (240)
                      .+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|++...    ...+..++|++|++.   +++.
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  345 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV  345 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence            489999999999999999999999999999999997 56789999999976531    123467899999974   7788


Q ss_pred             ccHHHHHHHHHHHhc-CCC--ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          116 LTVEEAMNVATALKL-GKD--LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       116 ltv~e~l~~~~~~~~-~~~--l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.+...... ...  ......++.++++++.+++. +.....+...|+++++++.+++++...
T Consensus       346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~  414 (501)
T PRK11288        346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSED  414 (501)
T ss_pred             CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccC
Confidence            999998875321110 000  11222234567788888874 455666777899999999999999865

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.9e-18  Score=162.82  Aligned_cols=133  Identities=22%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .-.|+.+.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++.        ..++|++|++
T Consensus       321 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~p~~G~i~~~~~--------~~i~~~~q~~  391 (530)
T PRK15064        321 EVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE-LEPDSGTVKWSEN--------ANIGYYAQDH  391 (530)
T ss_pred             EEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCc--------eEEEEEcccc
Confidence            456788889888999999999999999999999999999999999997 5678999999873        4589999987


Q ss_pred             c--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 Q--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .  +...+++.+++...   . ...    ...+.++.++..+++. +.........|+++++++.+++++...
T Consensus       392 ~~~~~~~~t~~~~~~~~---~-~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~  456 (530)
T PRK15064        392 AYDFENDLTLFDWMSQW---R-QEG----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK  456 (530)
T ss_pred             cccCCCCCcHHHHHHHh---c-cCC----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence            4  45568998876531   1 111    1123456677777763 455666777899999999999999874

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.76  E-value=1.8e-18  Score=166.11  Aligned_cols=143  Identities=22%  Similarity=0.286  Sum_probs=101.9

Q ss_pred             cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .-+|+...+++ +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++||
T Consensus       336 ~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~v  414 (588)
T PRK13657        336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAVV  414 (588)
T ss_pred             EEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            34577777754 67999999999999999999999999999999999984 578999999998653   34667899999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++. .|++||+.+..     +...+++....++.+     +..+  +.+......-...|++++|++.+++++++
T Consensus       415 ~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~  488 (588)
T PRK13657        415 FQDAGLFN-RSIEDNIRVGR-----PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK  488 (588)
T ss_pred             ecCccccc-ccHHHHHhcCC-----CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            99998875 59999997531     122233322222221     1111  11111111112367889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       489 ~  489 (588)
T PRK13657        489 D  489 (588)
T ss_pred             C
Confidence            5

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.76  E-value=3.9e-18  Score=162.92  Aligned_cols=136  Identities=24%  Similarity=0.273  Sum_probs=104.8

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .-.|+++.++++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++ .       ..++|++|++
T Consensus       326 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~  396 (556)
T PRK11819        326 EAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSR  396 (556)
T ss_pred             EEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECC-c-------eEEEEEeCch
Confidence            356788888888999999999999999999999999999999999997 567899999843 2       1489999996


Q ss_pred             -cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 -QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 -~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                       .+++.+|+.+++.+.....   .....  ...++.++..+++.. .....+...|+++++++.+++++...
T Consensus       397 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~  463 (556)
T PRK11819        397 DALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQG  463 (556)
T ss_pred             hhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence             6778899999987642111   11111  112345677777753 34556677899999999999998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.76  E-value=7.4e-18  Score=159.45  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch----hhhhhceEEcccc---ccccc
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS----QFRKLSCYIMQDN---QLHAN  115 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~----~~~~~~g~v~Q~~---~~~~~  115 (240)
                      .+|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.++...    ..+..++|++|++   .+++.
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~  355 (510)
T PRK15439        277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL-RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD  355 (510)
T ss_pred             CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence            369999999999999999999999999999999997 567899999999765321    1234689999985   36777


Q ss_pred             ccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          116 LTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       116 ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+++.................++.++.++..+++. ......+...|++++|++.+++++...
T Consensus       356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~  421 (510)
T PRK15439        356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS  421 (510)
T ss_pred             CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence            88988875321110000011122234566778888875 556666778899999999999999865

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=5.7e-18  Score=137.35  Aligned_cols=75  Identities=32%  Similarity=0.443  Sum_probs=64.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      .|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|.+...    ...++.++|++|
T Consensus         4 ~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q   82 (163)
T cd03216           4 RGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-YKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ   82 (163)
T ss_pred             EEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence            4678888888999999999999999999999999999999999997 56789999999976532    123456888888

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.76  E-value=1.4e-18  Score=169.86  Aligned_cols=142  Identities=26%  Similarity=0.274  Sum_probs=100.7

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+...|+  .+++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++||
T Consensus       466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~~v  544 (694)
T TIGR03375       466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIGYV  544 (694)
T ss_pred             EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccEEE
Confidence            357777775  357999999999999999999999999999999999985 578999999998753   45678899999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++. .|++||+.+..     ...+.++..+.++.+     +..+  +.+......-...|++++|++.+++++..
T Consensus       545 ~Q~~~lf~-~TI~eNi~~~~-----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~  618 (694)
T TIGR03375       545 PQDPRLFY-GTLRDNIALGA-----PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR  618 (694)
T ss_pred             CCChhhhh-hhHHHHHhCCC-----CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            99998876 59999997531     112233322222221     1110  01110011112367788999999998876


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       619 ~  619 (694)
T TIGR03375       619 D  619 (694)
T ss_pred             C
Confidence            4

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.75  E-value=7.4e-18  Score=160.85  Aligned_cols=136  Identities=26%  Similarity=0.300  Sum_probs=104.8

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .-.|+++.++++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+++ .       ..++|++|++
T Consensus       324 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-~~p~~G~i~~~~-~-------~~i~~v~q~~  394 (552)
T TIGR03719       324 EAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-EQPDSGTIKIGE-T-------VKLAYVDQSR  394 (552)
T ss_pred             EEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-CCCCCeEEEECC-c-------eEEEEEeCCc
Confidence            456888899888999999999999999999999999999999999997 567899999843 2       1489999996


Q ss_pred             -cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 -QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 -~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                       .+++.+++.+++.+.....   .....  ...++.++..+++.. .....+...|+++++++.+++++...
T Consensus       395 ~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~  461 (552)
T TIGR03719       395 DALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSG  461 (552)
T ss_pred             cccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhC
Confidence             4777889999987642111   11111  112345677777753 34556677899999999999998765

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.75  E-value=1.8e-17  Score=155.45  Aligned_cols=137  Identities=22%  Similarity=0.291  Sum_probs=103.3

Q ss_pred             ccCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEE
Q psy310           30 NTNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYI  106 (240)
Q Consensus        30 ~~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v  106 (240)
                      -.-+|+.+.++.   +++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.++|.+.          ++
T Consensus        22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-l~P~sGeI~I~G~~~----------~i   90 (549)
T PRK13545         22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-TMPNKGTVDIKGSAA----------LI   90 (549)
T ss_pred             eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-CCCCceEEEECCEee----------eE
Confidence            345667777776   4799999999999999999999999999999999997 567899999998642          12


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+.+.+.+.+|+.+++.+.....   ........+.+..+++.+++.+.....+...++++++++.+++++...
T Consensus        91 ~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~  161 (549)
T PRK13545         91 AISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN  161 (549)
T ss_pred             EeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence            22334556689999987643221   122333344566677777877666666777899999999999999875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.75  E-value=9.4e-18  Score=136.96  Aligned_cols=135  Identities=27%  Similarity=0.331  Sum_probs=100.4

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchh---hhhhceEEcccccc--cccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ---FRKLSCYIMQDNQL--HANL  116 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~---~~~~~g~v~Q~~~~--~~~l  116 (240)
                      ..+++.|||++.+|+.+++||.||||||||.|+|+|+ .+|.+|+|.++++.....+   ..+.+-++||||.-  .+.+
T Consensus        26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl  104 (267)
T COG4167          26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL  104 (267)
T ss_pred             hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-cCCCCceEEECCccccccchHhhhhheeeeecCCccccChhh
Confidence            3589999999999999999999999999999999997 6689999999999875433   23678999999864  3444


Q ss_pred             cHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc-chhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          117 TVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT-NHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       117 tv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      .+.+.+...  +.+...+....+.+.+-+-+..+++ +++...++.-.+.+++|++.+++++..
T Consensus       105 ~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL  166 (267)
T COG4167         105 RIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL  166 (267)
T ss_pred             hhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc
Confidence            445544443  3333455666667777777777764 455555556666777888888777643

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.75  E-value=4e-18  Score=163.72  Aligned_cols=142  Identities=23%  Similarity=0.268  Sum_probs=102.0

Q ss_pred             CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      -+|+.+.+++ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|.+|+|.++|.+..   ...+++.++|++
T Consensus       337 ~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~  415 (585)
T TIGR01192       337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-YDPTVGQILIDGIDINTVTRESLRKSIATVF  415 (585)
T ss_pred             EEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-CCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence            4688888865 5799999999999999999999999999999999998 5578999999997653   345678899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhc-C-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYR-S-DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++. .|++||+.+..     .....++..+.++..     +.. + +............|++++|++.+++++...
T Consensus       416 q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       416 QDAGLFN-RSIRENIRLGR-----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             cCCccCc-ccHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9998875 69999987531     112222222222211     111 1 111111122234678899999999999875

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.75  E-value=2.6e-18  Score=164.39  Aligned_cols=143  Identities=22%  Similarity=0.257  Sum_probs=98.7

Q ss_pred             cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      .-+|+++.+.+   +++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++
T Consensus       339 ~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~  417 (576)
T TIGR02204       339 EFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARMA  417 (576)
T ss_pred             EEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhce
Confidence            34577777753   57999999999999999999999999999999999984 578999999997653   345678899


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      |++|++.++ ..|++||+.+..     +..+.+...+.++.+     +..+  +.+..........+++++|++.+++++
T Consensus       418 ~~~Q~~~lf-~~Ti~~Ni~~~~-----~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal  491 (576)
T TIGR02204       418 LVPQDPVLF-AASVMENIRYGR-----PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI  491 (576)
T ss_pred             EEccCCccc-cccHHHHHhcCC-----CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            999999876 558999987521     111222222222211     1111  111111111123567889999999887


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       492 ~~~  494 (576)
T TIGR02204       492 LKD  494 (576)
T ss_pred             HhC
Confidence            753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.74  E-value=1.1e-17  Score=162.12  Aligned_cols=135  Identities=22%  Similarity=0.302  Sum_probs=104.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc-
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN-  110 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~-  110 (240)
                      -.|+.+.++++++|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+ |...       .++|++|++ 
T Consensus       322 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-~~p~~G~i~~-~~~~-------~i~y~~q~~~  392 (635)
T PRK11147        322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-LQADSGRIHC-GTKL-------EVAYFDQHRA  392 (635)
T ss_pred             EeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEE-CCCc-------EEEEEeCccc
Confidence            46889999999999999999999999999999999999999999997 5678999998 4322       489999986 


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+.+.+|+.+++.+... ..  ....  ....+..++..+++. +.....+...|+++++++.+++++...
T Consensus       393 ~l~~~~tv~e~l~~~~~-~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~  458 (635)
T PRK11147        393 ELDPEKTVMDNLAEGKQ-EV--MVNG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKP  458 (635)
T ss_pred             ccCCCCCHHHHHHhhcc-cc--cccc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence            47788899998875321 11  0111  123456677777764 344555667899999999999998865

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.74  E-value=1.8e-17  Score=172.12  Aligned_cols=141  Identities=26%  Similarity=0.391  Sum_probs=108.4

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC---CCCccEEEECCccCCc--hhhhhhceEEcccccccc
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT---SGTEGSITINGHERNL--SQFRKLSCYIMQDNQLHA  114 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~---~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~~~~~  114 (240)
                      ..+++|+++|+.|++||+++|+|||||||||||++|+|+..   .+.+|+|.++|.+...  ...++.++|++|++.+++
T Consensus        72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence            45789999999999999999999999999999999999742   4579999999986531  123456899999999999


Q ss_pred             cccHHHHHHHHHHHhcCC----CccHHHH-HHHHHHhhhcCCcchhhhh-----ccCCCCCchhhHHHHHHHHhcc
Q psy310          115 NLTVEEAMNVATALKLGK----DLTKAAR-KDVVRTLFYRSDTNHAQRC-----FLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       115 ~ltv~e~l~~~~~~~~~~----~l~~~~~-~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+||+|++.++..++...    ...+.+. +..++.+++.+++.+..+.     ...+.++++++++.+++++...
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~  227 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGG  227 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhC
Confidence            999999999876543221    1223332 2334557777787765433     3467899999999999999875

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.74  E-value=2.9e-18  Score=163.77  Aligned_cols=140  Identities=21%  Similarity=0.264  Sum_probs=100.4

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~  105 (240)
                      .-+|++..+.+  +++|+++||+|++||+++|+|+||||||||+++|+|+ ..|.+|+|.++|.+.   ....+++.++|
T Consensus       332 ~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-~~~~~G~I~i~g~~i~~~~~~~~~~~i~~  410 (571)
T TIGR02203       332 EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-YEPDSGQILLDGHDLADYTLASLRRQVAL  410 (571)
T ss_pred             EEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc-cCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence            34577777653  6799999999999999999999999999999999998 457899999999765   33566788999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  174 (240)
                      ++|++.++. .|++||+.+..    .+..++.+..+.    ++..++.+....           .-...|++++|++.++
T Consensus       411 v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~~----l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA  481 (571)
T TIGR02203       411 VSQDVVLFN-DTIANNIAYGR----TEQADRAEIERA----LAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA  481 (571)
T ss_pred             EccCccccc-ccHHHHHhcCC----CCCCCHHHHHHH----HHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence            999998774 59999987531    112233332332    222222211111           1123678899999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      ++++..
T Consensus       482 Rall~~  487 (571)
T TIGR02203       482 RALLKD  487 (571)
T ss_pred             HHHhcC
Confidence            988763

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.74  E-value=2.6e-18  Score=178.73  Aligned_cols=143  Identities=22%  Similarity=0.262  Sum_probs=103.3

Q ss_pred             CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC---------------------------
Q psy310           32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS---------------------------   81 (240)
Q Consensus        32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~---------------------------   81 (240)
                      -+|++.+|.   ++++|+++||+|++|+++|||||||||||||+++|.|++.+                           
T Consensus      1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265       1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred             EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence            368888885   35799999999999999999999999999999999999775                           


Q ss_pred             --------------------------CCccEEEECCccC---CchhhhhhceEEcccccccccccHHHHHHHHHHHhcCC
Q psy310           82 --------------------------GTEGSITINGHER---NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK  132 (240)
Q Consensus        82 --------------------------~~~G~V~v~g~~~---~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~  132 (240)
                                                |.+|+|.++|.++   ....+++.++||+|+|.++ ..|++||+.+..     .
T Consensus      1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~-----~ 1321 (1466)
T PTZ00265       1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK-----E 1321 (1466)
T ss_pred             cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-----C
Confidence                                      2689999999876   4567889999999999887 679999998641     1


Q ss_pred             CccHHHHHHHHHHhhh--cC-Ccchhhhhc----cCCCCCchhhHHHHHHHHhcc
Q psy310          133 DLTKAARKDVVRTLFY--RS-DTNHAQRCF----LSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       133 ~l~~~~~~~~~~~l~~--~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ....++..+.++..-.  .+ .+++..+..    -...|++++||+.+|+++...
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~ 1376 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE 1376 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC
Confidence            2233333333222110  00 011111111    123678899999999998764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.74  E-value=4.5e-18  Score=166.30  Aligned_cols=142  Identities=18%  Similarity=0.249  Sum_probs=101.2

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+...|+  ++++|+++||+|++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++||
T Consensus       458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~~v  536 (694)
T TIGR01846       458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMGVV  536 (694)
T ss_pred             EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCeEE
Confidence            357777774  357999999999999999999999999999999999984 578999999998753   35678889999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++. .|++||+.+..     ...+.....+.++.     .+..+  +++..........|++++|++.+++++..
T Consensus       537 ~q~~~lf~-~ti~eNi~~~~-----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       537 LQENVLFS-RSIRDNIALCN-----PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             ccCCeehh-hhHHHHHhcCC-----CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            99998875 59999987521     12222222222221     11111  11111111223467889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       611 ~  611 (694)
T TIGR01846       611 N  611 (694)
T ss_pred             C
Confidence            5

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.74  E-value=1.4e-17  Score=153.10  Aligned_cols=163  Identities=28%  Similarity=0.371  Sum_probs=113.1

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEccccccccccc
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      .+++++++||++.+||.+|||||||||||||.|+|.|.+ +|.+|.|+++|-+..   ..++.+++||++|+-.+++ -|
T Consensus       348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GT  425 (580)
T COG4618         348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GT  425 (580)
T ss_pred             CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-Cc
Confidence            468999999999999999999999999999999999974 578999999998764   3456789999999988875 58


Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcchhhhhc----cCCCCCchhhHHHHHHHHhcccccceeec
Q psy310          118 VEEAMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNHAQRCF----LSGPWGTFESSVLLALAMYNRIHEKTILK  188 (240)
Q Consensus       118 v~e~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~il~  188 (240)
                      +.||+.-     +..+.+.+..-+.++     ++..+  ++.-.+..    -...|++++|++.+++++|.. ..-.+||
T Consensus       426 IaeNIaR-----f~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~-P~lvVLD  497 (580)
T COG4618         426 IAENIAR-----FGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGGATLSGGQRQRIALARALYGD-PFLVVLD  497 (580)
T ss_pred             HHHHHHh-----ccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCCCCCCchHHHHHHHHHHHcCC-CcEEEec
Confidence            8998852     222223332222222     11111  11111111    123577899999999999875 2234555


Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ..+-.+..           .|---|.++|...|.++
T Consensus       498 EPNsNLD~-----------~GE~AL~~Ai~~~k~rG  522 (580)
T COG4618         498 EPNSNLDS-----------EGEAALAAAILAAKARG  522 (580)
T ss_pred             CCCCCcch-----------hHHHHHHHHHHHHHHcC
Confidence            55544433           26667888888876665

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.74  E-value=7.1e-18  Score=140.57  Aligned_cols=141  Identities=26%  Similarity=0.351  Sum_probs=102.4

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccccc--cc
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQ--LH  113 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~--~~  113 (240)
                      ..++++|+++|++|.+|+++.|||.|||||||||++|+|. ..+++|+|.++|.++.-   .....+++.|||||.  ..
T Consensus        16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~   94 (263)
T COG1101          16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-LKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA   94 (263)
T ss_pred             hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc-cccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence            3467899999999999999999999999999999999996 67899999999998743   334467889999986  45


Q ss_pred             ccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+|++||+.++......+++..   ..+.+..+..+..+  ++.......+...|++++|.+.+.++..+.
T Consensus        95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~  166 (263)
T COG1101          95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHP  166 (263)
T ss_pred             ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCC
Confidence            78999999998765433333322   12222333333332  344444445555788888888877776553

>KOG0065|consensus

Probab=99.74  E-value=2.3e-18  Score=172.19  Aligned_cols=181  Identities=29%  Similarity=0.494  Sum_probs=140.0

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      +.+.+|++|+--+.||-.+||+|+|||||||||++|+|... +..+|+|.|+|.+.....+++.+|||.|++.+.+.+||
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV  881 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV  881 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence            66889999999999999999999999999999999999633 34589999999988767789999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-------------------------------CCCch
Q psy310          119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-------------------------------PWGTF  167 (240)
Q Consensus       119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~~~~~  167 (240)
                      +|.+++.+.++++..++..++.+.++++++.+++.+..+..+..                               |..+.
T Consensus       882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL  961 (1391)
T KOG0065|consen  882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL  961 (1391)
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence            99999999999888888877778888888888876655443322                               22221


Q ss_pred             h-hHHHHHHHHhc-----------ccc--cceeeccce--eEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          168 E-SSVLLALAMYN-----------RIH--EKTILKSVS--GRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       168 ~-~~~~~~~~~~~-----------~~~--~~~il~~vs--l~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      . +...+.+..++           .++  ...|++..|  |-+++|..+...|+-|-+-+||+++....
T Consensus       962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~ 1030 (1391)
T KOG0065|consen  962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESI 1030 (1391)
T ss_pred             cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhc
Confidence            1 11111111111           111  223455555  56899999999999999999999998854

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.2e-17  Score=155.44  Aligned_cols=145  Identities=17%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q  108 (240)
                      +|+.+.  .+.+|+++||+|.+||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..    ...++.++|++|
T Consensus       254 ~~l~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q  330 (491)
T PRK10982        254 RNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI-REKSAGTITLHGKKINNHNANEAINHGFALVTE  330 (491)
T ss_pred             eCcccc--cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC-CcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence            345544  24699999999999999999999999999999999997 56789999999976532    112455899999


Q ss_pred             ccc---ccccccHHHHHHHHHH-HhcC-CC-ccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQ---LHANLTVEEAMNVATA-LKLG-KD-LTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~---~~~~ltv~e~l~~~~~-~~~~-~~-l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.   +++.+++.++...... .... .. ......++.++.+++.+++. ......+...|+++++++.+++++...
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~  409 (491)
T PRK10982        331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQ  409 (491)
T ss_pred             chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcC
Confidence            864   5666777665322111 0000 01 12222344556677777664 344566677899999999999999765

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6.2e-18  Score=157.86  Aligned_cols=137  Identities=28%  Similarity=0.345  Sum_probs=101.5

Q ss_pred             CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEcc
Q psy310           33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~Q  108 (240)
                      .|+.+.+++. ++++|+||++++|++++|||+||||||||+.+|+|+ .+|++|+|.++|.+.   ....+++.+++|+|
T Consensus       324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q  402 (559)
T COG4988         324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ  402 (559)
T ss_pred             cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-CCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence            4677777665 999999999999999999999999999999999998 567999999999765   34567899999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh----------hccCCCCCchhhHHHHHHHHh
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR----------CFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      +|.+++ -|++||+.+...     ...++..    .+++++.++.+.-+          .--.+.|+++.||+.+++++.
T Consensus       403 ~p~lf~-gTireNi~l~~~-----~~s~e~i----~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll  472 (559)
T COG4988         403 NPYLFA-GTIRENILLARP-----DASDEEI----IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL  472 (559)
T ss_pred             CCcccc-ccHHHHhhccCC-----cCCHHHH----HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence            998765 589999976321     1222222    22333333222211          112336778899999999987


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       473 ~~  474 (559)
T COG4988         473 SP  474 (559)
T ss_pred             CC
Confidence            64

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.74  E-value=5.1e-18  Score=162.48  Aligned_cols=142  Identities=22%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|+...+.  ++++|+++||+|++||+++|+||||||||||+++|+|++ +|.+|+|.++|.+..   ...+++.++|+
T Consensus       316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~v  394 (569)
T PRK10789        316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLAVV  394 (569)
T ss_pred             EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheEEE
Confidence            345556554  367999999999999999999999999999999999984 578999999998652   34567889999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++. .|++||+.+..     .....+...+.++..     ...+  +............|++++|++.+++++..
T Consensus       395 ~q~~~lf~-~ti~~Ni~~~~-----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~  468 (569)
T PRK10789        395 SQTPFLFS-DTVANNIALGR-----PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL  468 (569)
T ss_pred             ccCCeecc-ccHHHHHhcCC-----CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99998886 49999987531     112222222222211     0100  11111111123467889999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       469 ~  469 (569)
T PRK10789        469 N  469 (569)
T ss_pred             C
Confidence            5

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.73  E-value=3.3e-17  Score=141.47  Aligned_cols=120  Identities=20%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             eeeeeeEEEEe-----CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           43 TILKSVSGRLR-----SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        43 ~~L~~vsl~I~-----~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      ..+++++|++.     +||+++|+||||||||||+++|+|+ .+|.+|+|.++|.         .++|++|++......+
T Consensus         8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~-~~p~~G~i~~~g~---------~i~~~~q~~~~~~~~t   77 (246)
T cd03237           8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV-LKPDEGDIEIELD---------TVSYKPQYIKADYEGT   77 (246)
T ss_pred             cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC-CcCCCCeEEECCc---------eEEEecccccCCCCCC
Confidence            35666666665     7999999999999999999999997 5678999999874         4789999987777889


Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +.|++....... .   ..   ...+.++++.+++.+.........|++++|++.+++++..
T Consensus        78 v~e~l~~~~~~~-~---~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~  132 (246)
T cd03237          78 VRDLLSSITKDF-Y---TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK  132 (246)
T ss_pred             HHHHHHHHhhhc-c---cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999876432111 0   00   1224456666777666666666788899999998887765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.73  E-value=2.5e-17  Score=139.20  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=86.5

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-ECCccCCchhhhhhceEEcccccccccccHHHH
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-INGHERNLSQFRKLSCYIMQDNQLHANLTVEEA  121 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~  121 (240)
                      .+|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|. +++...          .+.+.+.+++.+++.|+
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-~~~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en   69 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL-DAPDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN   69 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence            379999999999999999999999999999999997 567899997 666432          12345667788999999


Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+.....   ........+   .+....++....+..+...+.++++++.+++++...
T Consensus        70 l~~~~~~~---~~~~~~~~~---~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~  122 (213)
T PRK15177         70 ARMMASLY---GLDGDEFSH---FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLP  122 (213)
T ss_pred             HHHHHHHc---CCCHHHHHH---HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcC
Confidence            98754322   112222122   222333444444445566788899999999998765

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.73  E-value=2.3e-17  Score=140.18  Aligned_cols=128  Identities=23%  Similarity=0.292  Sum_probs=94.1

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccc--cccHHHHHHHHHH
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA--NLTVEEAMNVATA  127 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~--~ltv~e~l~~~~~  127 (240)
                      |+|++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.+..  ..++.++|++|++.+..  ..++.+++.+...
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-~~~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGL-IPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            57899999999999999999999999997 5678999999997642  34567999999986643  4688888765321


Q ss_pred             HhcCC-CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          128 LKLGK-DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       128 ~~~~~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ..... ........+.+..+++.+++.+.....+...+.++++++.+++++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  131 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATR  131 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            10000 001112234466677777777666666677889999999999999875

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.73  E-value=3.5e-17  Score=144.01  Aligned_cols=129  Identities=22%  Similarity=0.248  Sum_probs=88.2

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -+|+.+.  .+++|+++||+|.+||+++|+|+|||||||||++|+|+ .+|.+|+|.++|          .++|++|++.
T Consensus        42 i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-~~p~~G~I~i~g----------~i~yv~q~~~  108 (282)
T cd03291          42 FSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-LEPSEGKIKHSG----------RISFSSQFSW  108 (282)
T ss_pred             EEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECC----------EEEEEeCccc
Confidence            3455553  46799999999999999999999999999999999997 567899999987          2799999988


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++ .++.+++.+...  .    ........++     ..+..+....  .........++++++++.+++++...
T Consensus       109 l~~-~tv~enl~~~~~--~----~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~  177 (282)
T cd03291         109 IMP-GTIKENIIFGVS--Y----DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD  177 (282)
T ss_pred             ccc-cCHHHHhhcccc--c----CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            776 489998765211  0    1111111111     1111110000  01112235678889999999998864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0055|consensus

Probab=99.72  E-value=1.1e-17  Score=167.13  Aligned_cols=143  Identities=24%  Similarity=0.322  Sum_probs=103.0

Q ss_pred             cCCCceecCCCce---eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310           31 TNTNNNCEPNEKT---ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~~~---~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g  104 (240)
                      .-+|++..|..++   +|+++||.|++|+.|+|||||||||||++++|.++|. |.+|+|.++|.++   ....++..+|
T Consensus       352 ef~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~ig  430 (1228)
T KOG0055|consen  352 EFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIG  430 (1228)
T ss_pred             EEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcC
Confidence            3467888888775   8999999999999999999999999999999999865 6899999999876   3567889999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  177 (240)
                      .|+|+|.++ ..|++||+.+..     ++..+....+.++..-..   ..++...+..    -...+++++||+.+|+++
T Consensus       431 lV~QePvlF-~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal  504 (1228)
T KOG0055|consen  431 LVSQEPVLF-ATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL  504 (1228)
T ss_pred             eeeechhhh-cccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence            999999665 679999998642     121222222222211100   0011111111    012678899999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       505 v~~  507 (1228)
T KOG0055|consen  505 VRN  507 (1228)
T ss_pred             HhC
Confidence            875

>PLN03140 ABC transporter G family member; Provisional

Probab=99.72  E-value=2.8e-17  Score=170.75  Aligned_cols=139  Identities=25%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC---ccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT---EGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~---~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      .+.+|+++|+.|++||+++|+|||||||||||++|+|++ .+.   +|+|.++|++......++.++||+|++.+++.+|
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT  255 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT  255 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence            578999999999999999999999999999999999974 455   8999999987633223567999999999999999


Q ss_pred             HHHHHHHHHHHhcCC-------CccHHHH------------------------HHHHHHhhhcCCcchhh-----hhccC
Q psy310          118 VEEAMNVATALKLGK-------DLTKAAR------------------------KDVVRTLFYRSDTNHAQ-----RCFLS  161 (240)
Q Consensus       118 v~e~l~~~~~~~~~~-------~l~~~~~------------------------~~~~~~l~~~~~~~~~~-----~~~~~  161 (240)
                      |+|++.++..++...       ...+.+.                        ...++.+++.+++.+..     .....
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            999999875443110       0111110                        11245567777776643     33456


Q ss_pred             CCCCchhhHHHHHHHHhcc
Q psy310          162 GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++++++++.+++++...
T Consensus       336 glSGGerkRVsia~aL~~~  354 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGP  354 (1470)
T ss_pred             CCCcccceeeeehhhhcCC
Confidence            7899999999999988775

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=4.5e-17  Score=157.91  Aligned_cols=132  Identities=21%  Similarity=0.240  Sum_probs=99.4

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .-.|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+++.        ..++|++|++
T Consensus       314 ~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~--------~~igy~~Q~~  384 (638)
T PRK10636        314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-LAPVSGEIGLAKG--------IKLGYFAQHQ  384 (638)
T ss_pred             EEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEEECCC--------EEEEEecCcc
Confidence            346888999999999999999999999999999999999999999997 5688999998641        2589999974


Q ss_pred             c--ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 Q--LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~--~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .  +....++.+.+..     ...    ......++.++..+++.. .....+...|+++++++.+++++...
T Consensus       385 ~~~l~~~~~~~~~~~~-----~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~  448 (638)
T PRK10636        385 LEFLRADESPLQHLAR-----LAP----QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR  448 (638)
T ss_pred             hhhCCccchHHHHHHH-----hCc----hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            2  3334455544321     111    112344667777777753 44556677899999999999999865

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.72  E-value=2.8e-17  Score=159.82  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=99.0

Q ss_pred             cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310           31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      .-+|+++.+. ++++|+++||+|++||+++|+||||||||||+++|+|+ .++.+|+|.+++        ++.++||+|+
T Consensus       453 ~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-~~~~~G~i~~~~--------~~~i~~v~Q~  523 (659)
T TIGR00954       453 KFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-WPVYGGRLTKPA--------KGKLFYVPQR  523 (659)
T ss_pred             EEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCeEeecC--------CCcEEEECCC
Confidence            4567888774 56899999999999999999999999999999999998 457889998754        4568999999


Q ss_pred             ccccccccHHHHHHHHHHHh-c-CCCccHHHHHHHHHHhhhcCCcchhhhh---------ccCCCCCchhhHHHHHHHHh
Q psy310          110 NQLHANLTVEEAMNVATALK-L-GKDLTKAARKDVVRTLFYRSDTNHAQRC---------FLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~-~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  178 (240)
                      +.++.. |++|++.+..... . .....    .+.+.++++.+++.+....         .....+++++|++.+++++.
T Consensus       524 ~~l~~~-tv~eni~~~~~~~~~~~~~~~----~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~  598 (659)
T TIGR00954       524 PYMTLG-TLRDQIIYPDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY  598 (659)
T ss_pred             CCCCCc-CHHHHHhcCCChhhhhccCCC----HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH
Confidence            987766 9999987532110 0 01111    1223445555555443222         12357788999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       599 ~~  600 (659)
T TIGR00954       599 HK  600 (659)
T ss_pred             cC
Confidence            75

>PTZ00243 ABC transporter; Provisional

Probab=99.72  E-value=2.2e-17  Score=172.87  Aligned_cols=137  Identities=23%  Similarity=0.229  Sum_probs=100.6

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|++..|.+  .++|+++||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++.   ...+|+.++||
T Consensus      1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I~iV 1389 (1560)
T PTZ00243       1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQFSMI 1389 (1560)
T ss_pred             EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcceEE
Confidence            3566777654  46999999999999999999999999999999999985 578999999998763   56788999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhcc----CCCCCchhhHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCFL----SGPWGTFESSVLLAL  175 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~~~  175 (240)
                      +|+|.++.. |+++|+...      ...+.++..+.++    ..++.+..       +..+    ...|++++|++.+++
T Consensus      1390 pQdp~LF~g-TIreNIdp~------~~~sdeeI~~Al~----~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243       1390 PQDPVLFDG-TVRQNVDPF------LEASSAEVWAALE----LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred             CCCCccccc-cHHHHhCcc------cCCCHHHHHHHHH----HCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence            999998864 999999631      1122333333332    22222111       1111    235678899999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++.++
T Consensus      1459 ALL~~ 1463 (1560)
T PTZ00243       1459 ALLKK 1463 (1560)
T ss_pred             HHhcC
Confidence            99864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.72  E-value=1.8e-17  Score=173.79  Aligned_cols=142  Identities=22%  Similarity=0.184  Sum_probs=101.1

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~  105 (240)
                      .-+|++.+|..  .++|+++||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++   ....+|+.+++
T Consensus      1239 ~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130       1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred             EEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhccEE
Confidence            34677777754  47999999999999999999999999999999999985 57899999999876   34678899999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|+|.++.. |+++|+....      ...+++..+.++..     ...+  +++..-...-...+++++|++.+|+++.
T Consensus      1318 VpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130       1318 IPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred             ECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence            9999998864 9999997421      11222222222221     1110  1111111111235678899999999887


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      +.
T Consensus      1391 r~ 1392 (1622)
T PLN03130       1391 RR 1392 (1622)
T ss_pred             cC
Confidence            63

>PRK13409 putative ATPase RIL; Provisional

Probab=99.72  E-value=7.3e-17  Score=154.96  Aligned_cols=129  Identities=19%  Similarity=0.195  Sum_probs=104.1

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -.|+.+.+++. .|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++          ..++|++|++.
T Consensus       343 ~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-~~p~~G~I~~~----------~~i~y~~Q~~~  410 (590)
T PRK13409        343 YPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV-LKPDEGEVDPE----------LKISYKPQYIK  410 (590)
T ss_pred             EcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEEe----------eeEEEeccccc
Confidence            45677777764 49999999999999999999999999999999997 56789999885          14899999988


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +...+|+.+++.+... ..    ..   ...++++++.+++.+.....+...|++++|++.+++++...
T Consensus       411 ~~~~~tv~e~l~~~~~-~~----~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~  471 (590)
T PRK13409        411 PDYDGTVEDLLRSITD-DL----GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRD  471 (590)
T ss_pred             CCCCCcHHHHHHHHhh-hc----Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            8888999998875321 11    11   12356677888887777777888999999999999999875

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.72  E-value=3.2e-17  Score=156.31  Aligned_cols=134  Identities=22%  Similarity=0.245  Sum_probs=95.4

Q ss_pred             CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      -+|+.+.|++ .++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+..   ...+++.++||+
T Consensus       325 ~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~  403 (547)
T PRK10522        325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFSAVF  403 (547)
T ss_pred             EEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence            4577777754 57999999999999999999999999999999999984 578999999998764   345678899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh---c--cCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC---F--LSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++.. |+.++-         ...+    .+.+.++++.+++......   .  -...+++++|++.+++++...
T Consensus       404 q~~~lf~~-ti~~n~---------~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~  467 (547)
T PRK10522        404 TDFHLFDQ-LLGPEG---------KPAN----PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEE  467 (547)
T ss_pred             cChhHHHH-hhcccc---------CchH----HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99977653 444430         0111    1222333333333322111   0  124678899999999998874

>PLN03232 ABC transporter C family member; Provisional

Probab=99.72  E-value=1.5e-17  Score=173.85  Aligned_cols=137  Identities=20%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v  106 (240)
                      -+|++.+|..  .++|+|+||+|++||++||||++|||||||+++|.|++ .|.+|+|.++|.++   ....+|+.++||
T Consensus      1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232       1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred             EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhcEEE
Confidence            4677877743  57999999999999999999999999999999999984 57899999999876   346778999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLAL  175 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  175 (240)
                      +|+|.++.. |+++|+....      ..+.++..+.++    ..++.+.-           ...-...|++++|++.+++
T Consensus      1316 pQdp~LF~g-TIr~NL~~~~------~~sdeei~~al~----~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232       1316 PQSPVLFSG-TVRFNIDPFS------EHNDADLWEALE----RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred             CCCCeeeCc-cHHHHcCCCC------CCCHHHHHHHHH----HcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence            999998864 9999987421      122232222222    22221111           1111235678899999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++.+.
T Consensus      1385 ALLr~ 1389 (1495)
T PLN03232       1385 ALLRR 1389 (1495)
T ss_pred             HHHhC
Confidence            88763

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=2.6e-17  Score=141.83  Aligned_cols=123  Identities=24%  Similarity=0.342  Sum_probs=103.0

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-------CchhhhhhceEEcccccccccccHH
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-------NLSQFRKLSCYIMQDNQLHANLTVE  119 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-------~~~~~~~~~g~v~Q~~~~~~~ltv~  119 (240)
                      +++|.++.--+++|.|+||||||||+++|+|+ ..|++|.|.++|+-.       .....++.+||||||..+++++||+
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL-~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr   94 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGL-TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR   94 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhcc-CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence            57888877689999999999999999999997 668999999999743       2345678999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      .|+++....  .       .......+...+++.|...+++...+++++|++.+.+++..
T Consensus        95 gNL~YG~~~--~-------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt  145 (352)
T COG4148          95 GNLRYGMWK--S-------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT  145 (352)
T ss_pred             cchhhhhcc--c-------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc
Confidence            999875321  1       23345567777889999999999999999999999998765

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.70  E-value=6.8e-17  Score=154.32  Aligned_cols=135  Identities=20%  Similarity=0.279  Sum_probs=98.5

Q ss_pred             CCCceecCCC-----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhc
Q psy310           32 NTNNNCEPNE-----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLS  103 (240)
Q Consensus        32 ~~~~~~~~~~-----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~  103 (240)
                      -+|+++.|++     +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ...+++.+
T Consensus       340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~p~~G~i~~~g~~i~~~~~~~~~~~i  418 (555)
T TIGR01194       340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YIPQEGEILLDGAAVSADSRDDYRDLF  418 (555)
T ss_pred             EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhhC
Confidence            4578888765     2599999999999999999999999999999999998 4578999999998763   34567889


Q ss_pred             eEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc------cCCCCCchhhHHHHHHHH
Q psy310          104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF------LSGPWGTFESSVLLALAM  177 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  177 (240)
                      +||+|++.++.. ++.++..        ..    ...+.+.++++..++.+.....      ....|++++|++.+++++
T Consensus       419 ~~v~q~~~lf~~-ti~~n~~--------~~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal  485 (555)
T TIGR01194       419 SAIFADFHLFDD-LIGPDEG--------EH----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW  485 (555)
T ss_pred             cEEccChhhhhh-hhhcccc--------cc----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence            999999987754 4554421        11    1122233444444444322221      134678899999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       486 l~~  488 (555)
T TIGR01194       486 LED  488 (555)
T ss_pred             HcC
Confidence            875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>KOG0059|consensus

Probab=99.70  E-value=1.3e-16  Score=159.47  Aligned_cols=144  Identities=24%  Similarity=0.284  Sum_probs=124.4

Q ss_pred             CCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310           33 TNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~  107 (240)
                      .|..+.++.+. +++++||.|++||++|++|+|||||||++++|.|. .+|.+|++.+.|++...    ...++.+||+|
T Consensus       568 ~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCP  646 (885)
T KOG0059|consen  568 NNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-TKPTSGEALIKGHDITVSTDFQQVRKQLGYCP  646 (885)
T ss_pred             cceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCC-ccCCcceEEEecCccccccchhhhhhhcccCC
Confidence            46677777777 99999999999999999999999999999999997 77899999999988743    23678899999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+..+.+.+|.+|.+.+-.+++   ++......+.++.+++.+++.+.........+++.++++..+.++...
T Consensus       647 Q~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~  716 (885)
T KOG0059|consen  647 QFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGD  716 (885)
T ss_pred             chhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcC
Confidence            9999999999999998866554   455566677788899999999988888888899999999999998764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.69  E-value=1.2e-16  Score=138.59  Aligned_cols=136  Identities=21%  Similarity=0.203  Sum_probs=97.3

Q ss_pred             CceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEE-----------ECCccCCch--hh
Q psy310           34 NNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSIT-----------INGHERNLS--QF   99 (240)
Q Consensus        34 ~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~-----------v~g~~~~~~--~~   99 (240)
                      |+.+.|+.. .+|+++|+ |.+||+++|+|||||||||||++|+|+ .+|++|+|.           ++|.+....  ..
T Consensus         5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK-LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC-cCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            566777664 59999995 999999999999999999999999998 567899996           666654211  11


Q ss_pred             h---hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHH
Q psy310          100 R---KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       100 ~---~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      +   ..++|++|+..+.+. ++.+++...  +.      .....+.+.++++.+++.+.........+.++++++.++++
T Consensus        83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~--l~------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara  153 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPK-AVKGKVGEL--LK------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAA  153 (255)
T ss_pred             hhcccceeeecchhccCch-HHHHHHHHH--hc------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence            1   135788888776663 555555432  11      11223445667777777765555566678889999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      ++..
T Consensus       154 l~~~  157 (255)
T cd03236         154 LARD  157 (255)
T ss_pred             HHhC
Confidence            8865

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.69  E-value=1.6e-16  Score=126.36  Aligned_cols=67  Identities=31%  Similarity=0.420  Sum_probs=59.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      +|+.+.+++.++|+++||++++||+++|+|+||||||||+++|+|+ .+|.+|+|.++|.        ..++|++|
T Consensus         4 ~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-~~~~~G~i~~~~~--------~~i~~~~~   70 (144)
T cd03221           4 ENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-LEPDEGIVTWGST--------VKIGYFEQ   70 (144)
T ss_pred             EEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-CCCCceEEEECCe--------EEEEEEcc
Confidence            4567777777899999999999999999999999999999999997 5678999999883        35788888

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=1.2e-16  Score=137.33  Aligned_cols=171  Identities=18%  Similarity=0.164  Sum_probs=118.7

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEE-cccccccccccH
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYI-MQDNQLHANLTV  118 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v-~Q~~~~~~~ltv  118 (240)
                      .++++|+||+|++|+++|++|||||||||+||+|+|+ ..|.+|.|.++|.+.-.  ..+-+.+++| .|..++.-.+.+
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence            3489999999999999999999999999999999997 55789999999986421  2233455555 445555555556


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecccee------
Q psy310          119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSG------  192 (240)
Q Consensus       119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl------  192 (240)
                      .+.+.+...++   .++...-+++...+.+.+++....+......|.+++.+..++.++.+.. ....|+.++.      
T Consensus       116 ~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p-~VLfLDEpTvgLDV~a  191 (325)
T COG4586         116 LDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP-KVLFLDEPTVGLDVNA  191 (325)
T ss_pred             hhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC-cEEEecCCccCcchhH
Confidence            66555544333   3445556666777777777776555555566777788888888877642 1112233321      


Q ss_pred             -----------EEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310          193 -----------RLRSGELTAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       193 -----------~I~~Ge~valvG~NGsGKSTLlk~l  217 (240)
                                 .-+++-.|.+.-++=++=++|-+-+
T Consensus       192 q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv  227 (325)
T COG4586         192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV  227 (325)
T ss_pred             HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence                       1356778888888888888876655

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.69  E-value=1.2e-16  Score=167.30  Aligned_cols=138  Identities=21%  Similarity=0.182  Sum_probs=100.8

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|++.+|..  .++|+++||+|++||++||||++|||||||+++|.+++ .|.+|+|.++|.++.   ...+|+.+++
T Consensus      1286 ~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957      1286 EFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred             EEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcCeE
Confidence            34677777754  47999999999999999999999999999999999985 578999999998763   4677899999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-------hhhcc----CCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-------QRCFL----SGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~  174 (240)
                      |+|+|.++.. |+++|+...     . ...+++..+.++    ..++.+.       .+..+    ...+++++|++.++
T Consensus      1365 VpQdp~LF~g-TIr~NLdp~-----~-~~sdeei~~al~----~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957      1365 IPQDPVLFSG-SLRMNLDPF-----S-QYSDEEVWWALE----LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred             ECCCCcccCc-cHHHHcCcc-----c-CCCHHHHHHHHH----HcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence            9999999875 999998621     1 122333222222    2222111       11111    23567889999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++.+.
T Consensus      1434 RALLr~ 1439 (1522)
T TIGR00957      1434 RALLRK 1439 (1522)
T ss_pred             HHHHcC
Confidence            988763

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03073 ABC transporter F family; Provisional

Probab=99.68  E-value=4e-16  Score=152.69  Aligned_cols=134  Identities=14%  Similarity=0.158  Sum_probs=97.2

Q ss_pred             cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310           31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      .-+|+.+.|+ .+.+|+++||+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+.+        +..++|++|+
T Consensus       510 ~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-l~p~~G~I~~~~--------~~~igyv~Q~  580 (718)
T PLN03073        510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-LQPSSGTVFRSA--------KVRMAVFSQH  580 (718)
T ss_pred             EEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCceEEECC--------ceeEEEEecc
Confidence            3468888885 45799999999999999999999999999999999997 567899999865        2358999998


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.  ..+++.++.......... ...    .+.++.++..+++.. .....+...|+++++++.+++++...
T Consensus       581 ~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~  645 (718)
T PLN03073        581 HV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  645 (718)
T ss_pred             cc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence            63  233443332221111111 111    234566777777763 44556677889999999999998865

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.68  E-value=4.7e-16  Score=139.91  Aligned_cols=136  Identities=22%  Similarity=0.291  Sum_probs=111.4

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceEEccccc--cc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCYIMQDNQ--LH  113 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~v~Q~~~--~~  113 (240)
                      ..+++++||++.+||.+||||+||||||||-++|.+++.  .+|+|.+.|.++.      ..++++.+-+|||||.  +.
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs  377 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS  377 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence            468999999999999999999999999999999999743  3599999998764      2456788999999985  67


Q ss_pred             ccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          114 ANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       114 ~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.++|.+.+...... ....+...++.+++.+.+..++++.. ..+++...++++.|++.+++++...
T Consensus       378 PRmtV~qII~EGL~v-h~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLk  444 (534)
T COG4172         378 PRMTVGQIIEEGLRV-HEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILK  444 (534)
T ss_pred             cccCHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcC
Confidence            888998877655433 23356777778888888888887654 5667778899999999999998765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.68  E-value=1.2e-16  Score=166.92  Aligned_cols=136  Identities=21%  Similarity=0.242  Sum_probs=99.8

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      -+|++.+|.  ..++|+++||+|++||++||||++|||||||+++|.|++.  .+|+|.++|.++.   ...+|+.++||
T Consensus      1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271      1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred             EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEE
Confidence            467887775  4789999999999999999999999999999999999853  6899999998763   45678999999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-------cc----CCCCCchhhHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-------FL----SGPWGTFESSVLLAL  175 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~  175 (240)
                      +|+|.++.. |+++|+....      ....+...+    +++..++.+....       .+    ...+++++|++.+++
T Consensus      1298 pQdp~LF~G-TIR~NLdp~~------~~tdeei~~----aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271      1298 PQKVFIFSG-TFRKNLDPYE------QWSDEEIWK----VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred             eCCCccCcc-CHHHHhCccc------CCCHHHHHH----HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence            999999864 9999996321      112222222    2333332221111       11    125678899999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++.++
T Consensus      1367 ALLr~ 1371 (1490)
T TIGR01271      1367 SILSK 1371 (1490)
T ss_pred             HHhCC
Confidence            87763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.68  E-value=2.4e-16  Score=129.73  Aligned_cols=68  Identities=25%  Similarity=0.341  Sum_probs=60.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      .|+.+.++++.+++++ |+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|..         ++|++|++.
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~---------i~~~~q~~~   71 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-LIPNGDNDEWDGIT---------PVYKPQYID   71 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCcEEEECCEE---------EEEEcccCC
Confidence            5788999999999985 99999999999999999999999999997 56789999998843         678888653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.7e-16  Score=128.79  Aligned_cols=141  Identities=18%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------------hhhh
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------------SQFR  100 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------------~~~~  100 (240)
                      .++++-|+...-.++|||+++|||+.||||+|||||||||+||++. ..|+.|+|.+.-.+...            ..++
T Consensus        10 ~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~R   88 (258)
T COG4107          10 SGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLR   88 (258)
T ss_pred             hhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc-cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhh
Confidence            3577889999999999999999999999999999999999999997 56889999986543211            1134


Q ss_pred             hhceEEccccccccccc------HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-hhccCCCCCchhhHHHH
Q psy310          101 KLSCYIMQDNQLHANLT------VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-RCFLSGPWGTFESSVLL  173 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~lt------v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~  173 (240)
                      ...|+|.|+|.--..+.      +.|-++..-..+++      ..+..+..+++.+.+.... +..+...+++++|++.+
T Consensus        89 TeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG------~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG------NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             hccceeecCccccceeeeccCCccchhHHhhhhhhhh------hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence            45799999985332232      23322211111111      2233455566666654332 22334568899999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++.++.+
T Consensus       163 ARnLVt~  169 (258)
T COG4107         163 ARNLVTR  169 (258)
T ss_pred             HHHhccC
Confidence            9988765

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=9.4e-17  Score=148.57  Aligned_cols=140  Identities=26%  Similarity=0.273  Sum_probs=102.9

Q ss_pred             ccCCCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           30 NTNTNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        30 ~~~~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      -.-+|++.+|.+..  +|+++||+|.+||+++|+|+||||||||+++|.|.+ .|++|+|.++|.++.   ....++.++
T Consensus       337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHh
Confidence            35567777777755  999999999999999999999999999999999975 478999999998763   233677899


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhc-----------cCCCCCchhhHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCF-----------LSGPWGTFESSVLL  173 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  173 (240)
                      ++.|.+.++ .-|+++|++++.     +..+.++    +.++++++++.+.....           -...|+++++|+.+
T Consensus       416 vl~Qr~hlF-~~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl  485 (573)
T COG4987         416 VLTQRVHLF-SGTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL  485 (573)
T ss_pred             hhccchHHH-HHHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence            999998876 458999998642     1222222    33344555544433222           12356788899999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      ++.+.+.
T Consensus       486 AR~LL~d  492 (573)
T COG4987         486 ARALLHD  492 (573)
T ss_pred             HHHHHcC
Confidence            8887663

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.67  E-value=3.8e-16  Score=139.99  Aligned_cols=117  Identities=25%  Similarity=0.357  Sum_probs=93.0

Q ss_pred             EECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHH
Q psy310           60 IMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAA  138 (240)
Q Consensus        60 LvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~  138 (240)
                      |+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++|++|++.+++.+++.+++.+.....   ......
T Consensus         1 l~G~nGsGKSTLl~~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGF-EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCC-CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence            6899999999999999997 5678999999998753 2234567999999999999999999998764321   122333


Q ss_pred             HHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          139 RKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ..+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~  118 (325)
T TIGR01187        77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK  118 (325)
T ss_pred             HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            445667788888887777777778899999999999999875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.67  E-value=2.7e-16  Score=163.79  Aligned_cols=93  Identities=28%  Similarity=0.381  Sum_probs=79.2

Q ss_pred             cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE-CCccC---Cchhhhhhc
Q psy310           31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI-NGHER---NLSQFRKLS  103 (240)
Q Consensus        31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v-~g~~~---~~~~~~~~~  103 (240)
                      .-+|+.+.|+.   .++|+++||+|++||+++|+||||||||||+++|+|++ .|++|+|.+ +|.++   ....+++.+
T Consensus       384 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~I  462 (1466)
T PTZ00265        384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSKI  462 (1466)
T ss_pred             EEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHhc
Confidence            44688888875   36999999999999999999999999999999999984 578999999 45654   334567889


Q ss_pred             eEEcccccccccccHHHHHHHH
Q psy310          104 CYIMQDNQLHANLTVEEAMNVA  125 (240)
Q Consensus       104 g~v~Q~~~~~~~ltv~e~l~~~  125 (240)
                      +||+|++.++. .|++|++.+.
T Consensus       463 g~V~Q~~~LF~-~TI~eNI~~g  483 (1466)
T PTZ00265        463 GVVSQDPLLFS-NSIKNNIKYS  483 (1466)
T ss_pred             cEecccccchh-ccHHHHHHhc
Confidence            99999999886 5999999874

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.67  E-value=3.8e-16  Score=134.56  Aligned_cols=100  Identities=24%  Similarity=0.284  Sum_probs=78.9

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHH
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEA  121 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~  121 (240)
                      ..++++|||+|++||++||||+||||||||.|+|.|+ ..|++|+|.+.|.+....  .                     
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~pt~G~i~f~g~~i~~~--~---------------------   81 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EEPTSGEILFEGKDITKL--S---------------------   81 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cCCCCceEEEcCcchhhc--c---------------------
Confidence            5799999999999999999999999999999999997 668999999999774211  1                     


Q ss_pred             HHHHHHHhcCCCccHHHHHHHHHHhhhcCCcch-hhhhccCCCCCchhhHHHHHHHHhc
Q psy310          122 MNVATALKLGKDLTKAARKDVVRTLFYRSDTNH-AQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       122 l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                                    .....+.+.++++.+++.. ...+++...++++.|++.+|+++..
T Consensus        82 --------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal  126 (268)
T COG4608          82 --------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL  126 (268)
T ss_pred             --------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhh
Confidence                          1233455666777777544 4566777788888899888887654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.65  E-value=1.1e-15  Score=122.82  Aligned_cols=75  Identities=36%  Similarity=0.570  Sum_probs=63.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q  108 (240)
                      +|+.+.+.++.+|++++|+|++||+++|+|+||||||||+++|+|+ .++.+|+|.++|.+...   ......++|++|
T Consensus         3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267           3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-LKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            3566777777899999999999999999999999999999999997 45789999999976532   234567889988

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055|consensus

Probab=99.65  E-value=5.8e-16  Score=154.86  Aligned_cols=143  Identities=21%  Similarity=0.289  Sum_probs=105.2

Q ss_pred             cCCCceecCCCce---eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310           31 TNTNNNCEPNEKT---ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~~~---~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g  104 (240)
                      .-+|+.-+|..+|   +|+++||+|++|+.+||||||||||||...+|-.+|. |++|.|.++|.++   ++..+|+.++
T Consensus       989 ~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen  989 EFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred             EEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcc
Confidence            3467777777665   8999999999999999999999999999999999865 6899999999876   4577899999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  177 (240)
                      .|.|+|.++. -|++||+.+.    . ...+..+..+.++..-.+   ..+++-.+..    -...+++++||+.+|+++
T Consensus      1068 lVsQEP~LF~-~TIrENI~YG----~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1068 LVSQEPVLFN-GTIRENIAYG----S-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred             eeccCchhhc-ccHHHHHhcc----C-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence            9999999874 5999999875    1 113343333333322111   0111111111    123678899999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      .+.
T Consensus      1142 lRn 1144 (1228)
T KOG0055|consen 1142 LRN 1144 (1228)
T ss_pred             HcC
Confidence            864

>KOG0056|consensus

Probab=99.65  E-value=1.7e-16  Score=145.49  Aligned_cols=140  Identities=23%  Similarity=0.269  Sum_probs=97.4

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      .|+..+|. ++++|+||||.+.+|+.++||||||+||||++|+|-.++. ..+|.|.++|+|+.   .+.+|..+|+|||
T Consensus       541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ  619 (790)
T KOG0056|consen  541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVVPQ  619 (790)
T ss_pred             EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcccC
Confidence            45666655 4789999999999999999999999999999999999754 56899999999873   4567899999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhc---CCcchhhhhc----cCCCCCchhhHHHHHHHHhc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYR---SDTNHAQRCF----LSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  179 (240)
                      |..++.+ |+..|++++..     ....++..+.+++...+   +..++.....    -...+++++|++.+++.+.+
T Consensus       620 DtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK  691 (790)
T KOG0056|consen  620 DTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK  691 (790)
T ss_pred             cceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence            9988754 66666665421     11223333333333221   1222221111    12356788889888876654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=5.5e-15  Score=119.49  Aligned_cols=149  Identities=21%  Similarity=0.226  Sum_probs=105.5

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC--CccCCc---------hhhhhhceEEcccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN--GHERNL---------SQFRKLSCYIMQDN  110 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~--g~~~~~---------~~~~~~~g~v~Q~~  110 (240)
                      -++|+++||+|+.||+++|=||||||||||||+|.+-|. |++|+|.+.  |.-+.+         .-.++-+|||.|.-
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL  102 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL  102 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence            368999999999999999999999999999999999754 789999874  221111         12246789999987


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcccccceeecc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNRIHEKTILKS  189 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~  189 (240)
                      ...+..+..+.++....   ..+......+..++.++.++.+++. ..-.+...+++++|++-+++.+.-.+ .-.+|+.
T Consensus       103 RviPRV~aLdVvaePll---~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~-pILLLDE  178 (235)
T COG4778         103 RVIPRVSALDVVAEPLL---ARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDY-PILLLDE  178 (235)
T ss_pred             HhccCcchHHHHHhHHH---HcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccC-ceEEecC
Confidence            77776666665554322   2244556667778888888887654 33334456788899999998876543 2234555


Q ss_pred             ceeEEe
Q psy310          190 VSGRLR  195 (240)
Q Consensus       190 vsl~I~  195 (240)
                      .+-++.
T Consensus       179 PTasLD  184 (235)
T COG4778         179 PTASLD  184 (235)
T ss_pred             Cccccc
Confidence            555443

>PLN03130 ABC transporter C family member; Provisional

Probab=99.59  E-value=3.5e-15  Score=156.81  Aligned_cols=131  Identities=20%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCc-cEEEECCccCCchhhhhhceEEc
Q psy310           32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~-G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      -+|+...++   ++++|+++||+|++||+++|+||+|||||||+++|.|++ ++.+ |+|.+          +..++||+
T Consensus       617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l----------~~~Iayv~  685 (1622)
T PLN03130        617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVI----------RGTVAYVP  685 (1622)
T ss_pred             EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEE----------cCeEEEEc
Confidence            356666665   367999999999999999999999999999999999984 5678 89975          34689999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhc----cCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCF----LSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+|.++. .|++||+.+...      .+++...+.++...-..+   +++.....    -...+++++||+.+|++++.+
T Consensus       686 Q~p~Lfn-gTIreNI~fg~~------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~  758 (1622)
T PLN03130        686 QVSWIFN-ATVRDNILFGSP------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN  758 (1622)
T ss_pred             CccccCC-CCHHHHHhCCCc------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence            9999875 699999986421      122222332222210000   11111111    123678899999999998864

>PLN03232 ABC transporter C family member; Provisional

Probab=99.59  E-value=4.2e-15  Score=155.58  Aligned_cols=132  Identities=22%  Similarity=0.247  Sum_probs=90.8

Q ss_pred             CCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           32 NTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        32 ~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      -+|+...++   ++++|+|+||+|++||+++|+||+|||||||+++|.|++ +|.+|.+.         ..+..++||+|
T Consensus       617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~---------~~~~~Iayv~Q  686 (1495)
T PLN03232        617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSV---------VIRGSVAYVPQ  686 (1495)
T ss_pred             EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEE---------EecCcEEEEcC
Confidence            356666665   367999999999999999999999999999999999985 46677553         23567999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCFL----SGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|.++. .|++||+.+..      ..+++...+.++......+   +++.....+    ...|++++||+.+|++++.+
T Consensus       687 ~p~Lf~-gTIreNI~fg~------~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~  758 (1495)
T PLN03232        687 VSWIFN-ATVRENILFGS------DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN  758 (1495)
T ss_pred             cccccc-ccHHHHhhcCC------ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence            999875 59999998642      1123333333332211001   111111111    13678899999999998764

>PTZ00243 ABC transporter; Provisional

Probab=99.58  E-value=7.3e-15  Score=154.07  Aligned_cols=126  Identities=25%  Similarity=0.257  Sum_probs=89.5

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccc
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANL  116 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~l  116 (240)
                      ++++++++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.+.          +.++|++|++.++ ..
T Consensus       668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~-~~~~~G~i~~~----------~~i~yv~Q~~~l~-~~  735 (1560)
T PTZ00243        668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ-FEISEGRVWAE----------RSIAYVPQQAWIM-NA  735 (1560)
T ss_pred             cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEEC----------CeEEEEeCCCccC-CC
Confidence            455678899999999999999999999999999999999997 55789999863          3589999999876 57


Q ss_pred             cHHHHHHHHHHHhcCCCccHHHHHHH-----HHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          117 TVEEAMNVATALKLGKDLTKAARKDV-----VRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       117 tv~e~l~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++|++.+....      ......+.     +...++.+  +............+++++|++.++++++..
T Consensus       736 Tv~enI~~~~~~------~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~  800 (1560)
T PTZ00243        736 TVRGNILFFDEE------DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYAN  800 (1560)
T ss_pred             cHHHHHHcCChh------hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999998763110      11111111     11222222  222222233445778899999999988764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.58  E-value=9.7e-15  Score=153.12  Aligned_cols=132  Identities=23%  Similarity=0.269  Sum_probs=92.8

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      .-+|+.+.++.  +++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.++|          .++||+|
T Consensus       638 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-~~~~~G~i~~~g----------~i~yv~Q  706 (1522)
T TIGR00957       638 TVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-MDKVEGHVHMKG----------SVAYVPQ  706 (1522)
T ss_pred             EEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CccCCcEEEECC----------EEEEEcC
Confidence            34567777754  5799999999999999999999999999999999997 557899999986          3899999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh--hhcCCc-ch----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL--FYRSDT-NH----AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l--~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.++ ..|++||+.+...      .+++...+.++..  .+.++. +.    .........+++++|++.++++++.+
T Consensus       707 ~~~l~-~~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~  778 (1522)
T TIGR00957       707 QAWIQ-NDSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  778 (1522)
T ss_pred             Ccccc-CCcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99875 5799999986421      1222222222211  111111 00    11112334678899999999988764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.58  E-value=9.7e-15  Score=152.79  Aligned_cols=122  Identities=22%  Similarity=0.260  Sum_probs=86.4

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE  120 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e  120 (240)
                      .+++|+++||+|++||+++|+|||||||||||++|+|+ .++.+|+|.++|          .++|++|++.++. .|++|
T Consensus       438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-~~~~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e  505 (1490)
T TIGR01271       438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE-LEPSEGKIKHSG----------RISFSPQTSWIMP-GTIKD  505 (1490)
T ss_pred             cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence            36799999999999999999999999999999999997 557899999987          3899999999876 49999


Q ss_pred             HHHHHHHHhcCCCccHHHHHHHHH-----HhhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          121 AMNVATALKLGKDLTKAARKDVVR-----TLFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       121 ~l~~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+.+...  .    ......+.++     ..+..+....  .........+++++|++.++++++..
T Consensus       506 NI~~g~~--~----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~  566 (1490)
T TIGR01271       506 NIIFGLS--Y----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKD  566 (1490)
T ss_pred             HHHhccc--c----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcC
Confidence            9986421  1    1111111111     1111111110  01111234678899999999988763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.56  E-value=1.4e-14  Score=119.13  Aligned_cols=61  Identities=25%  Similarity=0.246  Sum_probs=49.0

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      .+++|+++||+|++||+++|+|||||||||||++|.+     ++|++.+.+.....  .+..++|++|
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~--~~~~~~~~~q   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF--SRNKLIFIDQ   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc--ccccEEEEhH
Confidence            3679999999999999999999999999999999853     47999988763221  1234678776

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.54  E-value=3.8e-14  Score=134.08  Aligned_cols=131  Identities=27%  Similarity=0.308  Sum_probs=96.4

Q ss_pred             cCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310           31 TNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        31 ~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      .-.|+.+.|++ +.+++++||.|.+|+++|||||||+||||||++|+|. ..|.+|.|.+...        -.+||..|+
T Consensus       323 ~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-~~~~~G~v~~g~~--------v~igyf~Q~  393 (530)
T COG0488         323 EFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-LGPLSGTVKVGET--------VKIGYFDQH  393 (530)
T ss_pred             EEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-cccCCceEEeCCc--------eEEEEEEeh
Confidence            45788899966 6999999999999999999999999999999999997 5567999988542        347999998


Q ss_pred             cc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhc
Q psy310          110 NQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       110 ~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      .. +.+..++.+.+.-..     ....    ...++.++.+++.... ....+...|++++.++.++..+..
T Consensus       394 ~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~  456 (530)
T COG0488         394 RDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ  456 (530)
T ss_pred             hhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence            73 335567777654211     1111    4456667777776543 334455678888888887776655

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.53  E-value=1.3e-13  Score=143.91  Aligned_cols=39  Identities=38%  Similarity=0.492  Sum_probs=33.4

Q ss_pred             ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHH
Q psy310           35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN   73 (240)
Q Consensus        35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr   73 (240)
                      ++.+.-....|+++||+|++||+++|+|+||||||||++
T Consensus       601 L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        601 LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             EEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            334433445799999999999999999999999999999

>KOG0054|consensus

Probab=99.52  E-value=2.4e-14  Score=145.95  Aligned_cols=88  Identities=33%  Similarity=0.432  Sum_probs=75.7

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEEcccc
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYIMQDN  110 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v~Q~~  110 (240)
                      ++-|+++..++|++|||.|++||+|||||+.|||||||+.+|-.+ ..+.+|+|.|+|.|+   .+.++|+.++++||||
T Consensus      1145 ~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1145 SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred             EEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-cCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence            344555556899999999999999999999999999999999997 557899999999886   4578899999999999


Q ss_pred             cccccccHHHHHH
Q psy310          111 QLHANLTVEEAMN  123 (240)
Q Consensus       111 ~~~~~ltv~e~l~  123 (240)
                      .++. -|++.|++
T Consensus      1224 vLFs-GTvR~NLD 1235 (1381)
T KOG0054|consen 1224 VLFS-GTVRFNLD 1235 (1381)
T ss_pred             ceec-CccccccC
Confidence            9874 47777765

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.52  E-value=5e-14  Score=128.51  Aligned_cols=31  Identities=35%  Similarity=0.705  Sum_probs=28.2

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      |+.||+++++||||-|||||+++|+|..+|.
T Consensus       364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPd  394 (591)
T COG1245         364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPD  394 (591)
T ss_pred             eecceEEEEECCCCcchHHHHHHHhccccCC
Confidence            6788999999999999999999999986654

>KOG0066|consensus

Probab=99.52  E-value=8.1e-14  Score=126.76  Aligned_cols=44  Identities=27%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      |..+...++.+|.+.|+.|-.|.++|||||||-||||||+.|+.
T Consensus       269 nF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~  312 (807)
T KOG0066|consen  269 NFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA  312 (807)
T ss_pred             eeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence            45566778889999999999999999999999999999999987

>KOG0062|consensus

Probab=99.52  E-value=5.1e-14  Score=129.85  Aligned_cols=51  Identities=25%  Similarity=0.332  Sum_probs=46.2

Q ss_pred             CCcccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           27 TNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .-.--+.+.+.++|++.+|.+-++.+..|.++||||+||+|||||||+|+-
T Consensus        78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            334456678999999999999999999999999999999999999999986

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.47  E-value=7e-14  Score=105.53  Aligned_cols=73  Identities=18%  Similarity=0.085  Sum_probs=59.1

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccH
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      .++|++++|++++||+++|+||||||||||++++.       +|.+.+.|.+...   ....+..++++|+   ....++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti   71 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRL   71 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhH
Confidence            57899999999999999999999999999999985       6789999877532   2344566777777   345678


Q ss_pred             HHHHHH
Q psy310          119 EEAMNV  124 (240)
Q Consensus       119 ~e~l~~  124 (240)
                      ++|+.+
T Consensus        72 ~~Ni~~   77 (107)
T cd00820          72 RLNIFL   77 (107)
T ss_pred             Hhhcee
Confidence            888876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0054|consensus

Probab=99.47  E-value=2.2e-13  Score=138.98  Aligned_cols=122  Identities=25%  Similarity=0.404  Sum_probs=89.3

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE  120 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e  120 (240)
                      ..+.|+||||+|++|+.+||||+-|||||+||.+|.|. -+..+|.|.++|.          ++||+|.|+++ +.|++|
T Consensus       533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-m~~~sG~v~v~gs----------iaYv~Q~pWI~-ngTvre  600 (1381)
T KOG0054|consen  533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-MPKLSGSVAVNGS----------VAYVPQQPWIQ-NGTVRE  600 (1381)
T ss_pred             CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-cccccceEEEcCe----------EEEeccccHhh-CCcHHH
Confidence            34599999999999999999999999999999999997 5578999999883          79999999886 569999


Q ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh---hhhcc----CCCCCchhhHHHHHHHHhcc
Q psy310          121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA---QRCFL----SGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+.|...      .+++.-++.+++..-..+++-.   +...+    -..++++++|+.+|+|.|+.
T Consensus       601 NILFG~~------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~  661 (1381)
T KOG0054|consen  601 NILFGSP------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD  661 (1381)
T ss_pred             hhhcCcc------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence            9987532      2333333344432211121111   11111    12578899999999999875

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.44  E-value=2.3e-13  Score=122.37  Aligned_cols=82  Identities=27%  Similarity=0.440  Sum_probs=67.7

Q ss_pred             CCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcc
Q psy310           33 TNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q  108 (240)
                      .|+.++|.+. --+.+|+++|++||+|-|+|.||||||||+++|.|+ ..|++|+|.++|.+++.   .++|+..+-||-
T Consensus       326 rnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~PqsG~I~ldg~pV~~e~ledYR~LfSavFs  404 (546)
T COG4615         326 RNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFS  404 (546)
T ss_pred             eeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cCCCCCceeECCccCCCCCHHHHHHHHHHHhh
Confidence            4566666665 468899999999999999999999999999999998 45789999999998753   456677777887


Q ss_pred             ccccccc
Q psy310          109 DNQLHAN  115 (240)
Q Consensus       109 ~~~~~~~  115 (240)
                      |..+++.
T Consensus       405 DyhLF~~  411 (546)
T COG4615         405 DYHLFDQ  411 (546)
T ss_pred             hHhhhHh
Confidence            7766644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.44  E-value=1.1e-13  Score=119.48  Aligned_cols=58  Identities=41%  Similarity=0.574  Sum_probs=48.6

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh-----ccCChhhhc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL-----LEYSHKDLA  237 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~-----~~~~~~~~~  237 (240)
                      .|+++.+++++||+|.+||+++|+||||||||||+|+|+|+.+|  +++++     ..+++|++|
T Consensus        11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA   75 (258)
T COG1120          11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA   75 (258)
T ss_pred             EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence            46688999999999999999999999999999999999998665  45655     345666654

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.1e-13  Score=122.32  Aligned_cols=90  Identities=31%  Similarity=0.441  Sum_probs=74.5

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      .|+...|.. +++|+++||.+.+|+.++++||+|+||||++++|..++. +.+|.|.++|+++.   ...+++.+|+|||
T Consensus       266 ~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQ  344 (497)
T COG5265         266 INVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQ  344 (497)
T ss_pred             EEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence            345555554 689999999999999999999999999999999999865 67999999998763   3567899999999


Q ss_pred             cccccccccHHHHHHH
Q psy310          109 DNQLHANLTVEEAMNV  124 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~  124 (240)
                      |..++.+ |...++.+
T Consensus       345 DtvLFND-ti~yni~y  359 (497)
T COG5265         345 DTVLFND-TIAYNIKY  359 (497)
T ss_pred             cceehhh-hHHHHHhc
Confidence            9988743 56666654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.38  E-value=2.3e-13  Score=113.78  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC--------CCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS--------GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--------~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      ++++|++++| +++|+||||||||||+++|+|+..+        +..|++.+.|.+.........++++||++..+..  
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~--   90 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS--   90 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--
Confidence            6789999999 9999999999999999999986321        1234576767654333345679999999876510  


Q ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          118 VEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       118 v~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                                  ..   .    .+.+.++++.   .+.........++++++++.++.++..
T Consensus        91 ------------~~---~----~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~  130 (197)
T cd03278          91 ------------II---S----QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAI  130 (197)
T ss_pred             ------------EE---e----hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHH
Confidence                        00   0    1122333333   222333445577888899988887753

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.37  E-value=7.9e-13  Score=107.54  Aligned_cols=113  Identities=24%  Similarity=0.359  Sum_probs=80.6

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHHH
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVEE  120 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~e  120 (240)
                      -|-.+|.++..||++-|||||||||||||-.++|+ . |.+|+|.+.|.+..   ..++.+..+|+.|+..-...+.|+.
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm-~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~   91 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH   91 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCC-C-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence            46778999999999999999999999999999998 4 46899999998874   3456778889988766555677777


Q ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCc
Q psy310          121 AMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGT  166 (240)
Q Consensus       121 ~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  166 (240)
                      .+.+.    .    +...+...+..+...+++.++..+.+...+++
T Consensus        92 YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGG  129 (248)
T COG4138          92 YLTLH----Q----PDKTRTELLNDVAGALALDDKLGRSTNQLSGG  129 (248)
T ss_pred             hhhhc----C----chHHHHHHHHHHHhhhcccchhhhhhhhcCcc
Confidence            65531    1    12344445555555555555554444444443

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.36  E-value=3.6e-12  Score=121.07  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=96.0

Q ss_pred             cccCCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310           29 TNTNTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        29 ~~~~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      .-+-+|++....+ +.++++.+|+|++||.+.|.||||||||||+|+|+|+.+ ..+|+|....        ...+-|++
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P~--------~~~~lflp  462 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMPA--------DSALLFLP  462 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecCC--------CCceEEec
Confidence            3445677766655 689999999999999999999999999999999999865 4578877652        22367999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhcc------CCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL------SGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |.|.+... |.+|.+.++....   ..+.    +.+.+++..+++.+...+.-      ...+.+++|++..|+.+.++
T Consensus       463 Q~PY~p~G-tLre~l~YP~~~~---~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k  533 (604)
T COG4178         463 QRPYLPQG-TLREALCYPNAAP---DFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK  533 (604)
T ss_pred             CCCCCCCc-cHHHHHhCCCCCC---CCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence            99987555 8899887543211   1222    23344555556555443321      22567889999999999876

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=7.4e-13  Score=113.98  Aligned_cols=44  Identities=39%  Similarity=0.641  Sum_probs=39.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      |+...+|+++||+|.+||+++|+||||||||||+|+|+|+.+|.
T Consensus        14 y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~   57 (254)
T COG1121          14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS   57 (254)
T ss_pred             ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence            34336999999999999999999999999999999999985554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.29  E-value=2.3e-12  Score=107.88  Aligned_cols=52  Identities=37%  Similarity=0.533  Sum_probs=46.1

Q ss_pred             hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC--cccchhhhc
Q psy310          178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KILRQLWLL  229 (240)
Q Consensus       178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~--~~~~~~~~~  229 (240)
                      .+.+++..+|+++|++|.+||+++|+||+|||||||+|+|++|  ...++||+-
T Consensus         9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~   62 (240)
T COG1126           9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD   62 (240)
T ss_pred             eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC
Confidence            3467788999999999999999999999999999999999999  455688773

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.28  E-value=3.2e-12  Score=109.10  Aligned_cols=45  Identities=36%  Similarity=0.626  Sum_probs=41.1

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      .+....+|+++||+|.+||+|+|+|++|||||||+++|+||-+|.
T Consensus        12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~   56 (248)
T COG1116          12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT   56 (248)
T ss_pred             EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            345578999999999999999999999999999999999996665

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.27  E-value=4.1e-12  Score=105.08  Aligned_cols=47  Identities=34%  Similarity=0.451  Sum_probs=41.5

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   51 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI   51 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence            356799999999999999999999999999999999998544  56655

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.27  E-value=3.3e-12  Score=106.70  Aligned_cols=45  Identities=47%  Similarity=0.671  Sum_probs=41.5

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ...++.+++++||.++.||++||+||||||||||+|+|+|...|+
T Consensus        10 ~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~   54 (259)
T COG4559          10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD   54 (259)
T ss_pred             EeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC
Confidence            456889999999999999999999999999999999999986655

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.26  E-value=5.5e-12  Score=107.70  Aligned_cols=48  Identities=42%  Similarity=0.679  Sum_probs=41.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~   59 (235)
T cd03261          10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI   59 (235)
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            3456799999999999999999999999999999999999544  45644

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.26  E-value=4.1e-12  Score=108.09  Aligned_cols=45  Identities=47%  Similarity=0.620  Sum_probs=41.7

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      -++.+++||+++||+|.+||+|+|+|+||||||||+++++|.--+
T Consensus        39 v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p   83 (257)
T COG1119          39 VRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP   83 (257)
T ss_pred             EEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence            357899999999999999999999999999999999999998555

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.25  E-value=5.7e-12  Score=105.98  Aligned_cols=48  Identities=31%  Similarity=0.569  Sum_probs=41.4

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   59 (213)
T cd03259          10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI   59 (213)
T ss_pred             eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            3456799999999999999999999999999999999998543  45543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.25  E-value=6.5e-12  Score=106.24  Aligned_cols=48  Identities=31%  Similarity=0.480  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|++++|+|++||++||+|+||||||||+++|+|+..  .+++|+
T Consensus        10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   59 (220)
T cd03265          10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV   59 (220)
T ss_pred             ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            445679999999999999999999999999999999999843  456765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=7e-12  Score=106.64  Aligned_cols=45  Identities=38%  Similarity=0.515  Sum_probs=40.3

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ......+|+|+||+|++||++||||+||||||||+|+|+|...|.
T Consensus        36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt   80 (249)
T COG1134          36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT   80 (249)
T ss_pred             CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence            345668999999999999999999999999999999999985554

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.25  E-value=7.5e-12  Score=104.56  Aligned_cols=48  Identities=40%  Similarity=0.591  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus         8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   57 (206)
T TIGR03608         8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL   57 (206)
T ss_pred             ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence            445679999999999999999999999999999999999854  357755

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.24  E-value=7.5e-12  Score=105.55  Aligned_cols=45  Identities=49%  Similarity=0.682  Sum_probs=40.5

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~   63 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV   63 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence            5799999999999999999999999999999999999543  56655

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.24  E-value=3.2e-11  Score=102.85  Aligned_cols=35  Identities=34%  Similarity=0.451  Sum_probs=31.9

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHH
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLL   72 (240)
                      ...+..+|+++||+|++||+++|+|+||||||||+
T Consensus         4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            34556799999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.24  E-value=9.7e-12  Score=105.74  Aligned_cols=57  Identities=35%  Similarity=0.378  Sum_probs=47.7

Q ss_pred             HHHHHHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          172 LLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       172 ~~~~~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +....+..+++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   81 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV   81 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            444445557788899999999999999999999999999999999999844  346654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.24  E-value=7.6e-12  Score=110.75  Aligned_cols=53  Identities=38%  Similarity=0.606  Sum_probs=44.7

Q ss_pred             hcccc-cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhhcc
Q psy310          178 YNRIH-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWLLE  230 (240)
Q Consensus       178 ~~~~~-~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~~~  230 (240)
                      ...++ ++.+|++|||+|++||++||+|+||||||||+|+|+|+..|.  +++...
T Consensus        11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G   66 (293)
T COG1131          11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG   66 (293)
T ss_pred             EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcC
Confidence            34566 589999999999999999999999999999999999996554  554443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.24  E-value=7.9e-12  Score=105.12  Aligned_cols=48  Identities=38%  Similarity=0.569  Sum_probs=41.3

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus         9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~   58 (213)
T cd03235           9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV   58 (213)
T ss_pred             ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence            445679999999999999999999999999999999999954  345544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.23  E-value=1.9e-12  Score=110.04  Aligned_cols=51  Identities=35%  Similarity=0.617  Sum_probs=46.2

Q ss_pred             HHHHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          174 ALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       174 ~~~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ...+..++++-.++++|||+|++||++|||||||||||||+++|.|+.+|+
T Consensus         7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~   57 (250)
T COG0411           7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS   57 (250)
T ss_pred             eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC
Confidence            344566788899999999999999999999999999999999999997776

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.23  E-value=9.2e-12  Score=104.49  Aligned_cols=49  Identities=27%  Similarity=0.491  Sum_probs=42.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhhc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWLL  229 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~~  229 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+.
T Consensus        10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~   60 (210)
T cd03269          10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD   60 (210)
T ss_pred             ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence            345679999999999999999999999999999999999843  4577653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.23  E-value=9e-12  Score=104.56  Aligned_cols=45  Identities=36%  Similarity=0.623  Sum_probs=39.8

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   60 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV   60 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            6799999999999999999999999999999999998543  45543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.23  E-value=8.9e-12  Score=104.28  Aligned_cols=45  Identities=40%  Similarity=0.564  Sum_probs=39.9

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   59 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL   59 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            679999999999999999999999999999999999844  345543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.23  E-value=9.5e-12  Score=105.07  Aligned_cols=45  Identities=31%  Similarity=0.488  Sum_probs=40.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|++||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI   61 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            6799999999999999999999999999999999999543  56654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.23  E-value=1e-11  Score=104.33  Aligned_cols=48  Identities=31%  Similarity=0.525  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (213)
T cd03262          10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII   59 (213)
T ss_pred             ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            345679999999999999999999999999999999999954  456655

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.23  E-value=1.1e-11  Score=101.74  Aligned_cols=47  Identities=40%  Similarity=0.666  Sum_probs=40.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++.
T Consensus        10 ~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   58 (178)
T cd03229          10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL   58 (178)
T ss_pred             ECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3456799999999999999999999999999999999999554  4553

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.23  E-value=9.7e-12  Score=106.51  Aligned_cols=48  Identities=38%  Similarity=0.620  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (239)
T cd03296          12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF   61 (239)
T ss_pred             ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            445679999999999999999999999999999999999954  356654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.23  E-value=1.2e-11  Score=100.23  Aligned_cols=48  Identities=38%  Similarity=0.562  Sum_probs=41.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.++.+|++++|+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~   59 (163)
T cd03216          10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV   59 (163)
T ss_pred             ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            345679999999999999999999999999999999999944  446654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=1.1e-11  Score=103.59  Aligned_cols=48  Identities=31%  Similarity=0.571  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~   60 (200)
T PRK13540         11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF   60 (200)
T ss_pred             eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence            345679999999999999999999999999999999999954  456654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.22  E-value=9.6e-12  Score=110.40  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=41.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||++||+|+||||||||+++|+|+..|  +++++
T Consensus         3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~   52 (302)
T TIGR01188         3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV   52 (302)
T ss_pred             eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            3456799999999999999999999999999999999999544  45644

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.22  E-value=9.9e-12  Score=105.01  Aligned_cols=48  Identities=33%  Similarity=0.483  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|++||++||+|+||||||||+++|+|+..  .+++++
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   59 (222)
T cd03224          10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF   59 (222)
T ss_pred             cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            345679999999999999999999999999999999999954  356655

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.22  E-value=1.2e-11  Score=104.70  Aligned_cols=45  Identities=40%  Similarity=0.654  Sum_probs=40.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   63 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV   63 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            5799999999999999999999999999999999999543  56654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.22  E-value=1e-11  Score=105.90  Aligned_cols=48  Identities=33%  Similarity=0.616  Sum_probs=41.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   59 (236)
T cd03219          10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF   59 (236)
T ss_pred             ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence            345679999999999999999999999999999999999854  356654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.22  E-value=1.1e-11  Score=104.56  Aligned_cols=47  Identities=32%  Similarity=0.499  Sum_probs=41.8

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQL  226 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~  226 (240)
                      .|+.-.+|++|||+|.+||+++|+|+||+|||||+|+|+|+..+  ++|
T Consensus        12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I   60 (237)
T COG0410          12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI   60 (237)
T ss_pred             cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            45667899999999999999999999999999999999999555  455

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.22  E-value=1.1e-11  Score=105.54  Aligned_cols=48  Identities=27%  Similarity=0.573  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   59 (232)
T cd03218          10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL   59 (232)
T ss_pred             eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            4456799999999999999999999999999999999998543  56665

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.22  E-value=1.2e-11  Score=103.07  Aligned_cols=48  Identities=33%  Similarity=0.506  Sum_probs=41.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (198)
T TIGR01189        10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW   59 (198)
T ss_pred             ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence            44568999999999999999999999999999999999984  3446654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.22  E-value=1.1e-11  Score=96.87  Aligned_cols=42  Identities=45%  Similarity=0.716  Sum_probs=37.5

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      |++++|+|++||+++|+|+||||||||+++|+|+..+  +++++
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~   44 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILI   44 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEE
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccc
Confidence            6899999999999999999999999999999999554  56644

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.22  E-value=1.2e-11  Score=104.01  Aligned_cols=48  Identities=27%  Similarity=0.580  Sum_probs=41.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~   59 (213)
T cd03301          10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI   59 (213)
T ss_pred             ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            345679999999999999999999999999999999999844  356655

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.22  E-value=8.9e-12  Score=106.71  Aligned_cols=48  Identities=40%  Similarity=0.664  Sum_probs=41.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc----ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~----~~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+.    ..+++++
T Consensus        10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~   61 (243)
T TIGR01978        10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF   61 (243)
T ss_pred             ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence            44567999999999999999999999999999999999982    3456654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.22  E-value=1.2e-11  Score=104.09  Aligned_cols=46  Identities=41%  Similarity=0.569  Sum_probs=40.6

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      ++.+|+++||+|++||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~   61 (214)
T TIGR02673        14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI   61 (214)
T ss_pred             CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            467999999999999999999999999999999999984  3456654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=9.5e-12  Score=104.96  Aligned_cols=44  Identities=43%  Similarity=0.656  Sum_probs=40.7

Q ss_pred             ccc-ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          181 IHE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       181 ~~~-~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ..+ +.||++|||+|++||+.||+||||||||||..+|+|...|.
T Consensus        13 v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~   57 (251)
T COG0396          13 VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE   57 (251)
T ss_pred             ecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce
Confidence            445 49999999999999999999999999999999999997776

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.21  E-value=1.2e-11  Score=110.02  Aligned_cols=49  Identities=33%  Similarity=0.539  Sum_probs=43.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +++++.+|+++||+|++||++||+|+||||||||+++|+|+..|  +++|+
T Consensus        16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i   66 (306)
T PRK13537         16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL   66 (306)
T ss_pred             EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            45567899999999999999999999999999999999999554  46655

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.21  E-value=1.3e-11  Score=103.33  Aligned_cols=48  Identities=38%  Similarity=0.601  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~   60 (204)
T PRK13538         11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW   60 (204)
T ss_pred             ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            345679999999999999999999999999999999999844  346654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.3e-11  Score=107.12  Aligned_cols=48  Identities=40%  Similarity=0.650  Sum_probs=41.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   60 (255)
T PRK11248         11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL   60 (255)
T ss_pred             eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            345679999999999999999999999999999999999954  356654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.21  E-value=1.2e-11  Score=105.91  Aligned_cols=46  Identities=41%  Similarity=0.596  Sum_probs=40.6

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (243)
T TIGR02315        14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL   61 (243)
T ss_pred             CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence            46799999999999999999999999999999999999543  46544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.21  E-value=1.3e-11  Score=104.96  Aligned_cols=48  Identities=35%  Similarity=0.562  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (230)
T TIGR03410        10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL   59 (230)
T ss_pred             eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            3456799999999999999999999999999999999999543  56655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.21  E-value=1.4e-11  Score=102.89  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=41.4

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||++||+|+||||||||+++|+|+..  .+++++
T Consensus        10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (201)
T cd03231          10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL   59 (201)
T ss_pred             eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            345679999999999999999999999999999999999954  345543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.21  E-value=1.4e-11  Score=103.91  Aligned_cols=45  Identities=29%  Similarity=0.525  Sum_probs=40.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   62 (216)
T TIGR00960        16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF   62 (216)
T ss_pred             eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            4699999999999999999999999999999999999543  56655

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.21  E-value=1.4e-11  Score=104.79  Aligned_cols=48  Identities=42%  Similarity=0.606  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   66 (225)
T PRK10247         17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF   66 (225)
T ss_pred             eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence            44567999999999999999999999999999999999984  4456654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.21  E-value=1.5e-11  Score=103.17  Aligned_cols=48  Identities=29%  Similarity=0.491  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   61 (207)
T PRK13539         12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL   61 (207)
T ss_pred             ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            345679999999999999999999999999999999999944  356654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.20  E-value=1.5e-11  Score=102.98  Aligned_cols=48  Identities=29%  Similarity=0.554  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   59 (208)
T cd03268          10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF   59 (208)
T ss_pred             ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            345679999999999999999999999999999999999843  456655

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.20  E-value=1.4e-11  Score=111.17  Aligned_cols=46  Identities=30%  Similarity=0.513  Sum_probs=41.2

Q ss_pred             hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ...++++.+|+++||+|.+||++||+|+||||||||+++|+|+..|
T Consensus        48 ~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p   93 (340)
T PRK13536         48 SKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP   93 (340)
T ss_pred             EEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3355677899999999999999999999999999999999998554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.20  E-value=1.2e-11  Score=111.35  Aligned_cols=51  Identities=29%  Similarity=0.619  Sum_probs=44.4

Q ss_pred             hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      .+.+++..+++|+||+|++||+++|+||+|||||||||+|+||-.|+  +|++
T Consensus        12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l   64 (352)
T COG3842          12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL   64 (352)
T ss_pred             eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            34567789999999999999999999999999999999999995554  5543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.20  E-value=1.7e-11  Score=100.13  Aligned_cols=47  Identities=34%  Similarity=0.577  Sum_probs=40.9

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      +++.+|+++||+|.+||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        11 ~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~   59 (173)
T cd03230          11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV   59 (173)
T ss_pred             CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            3457999999999999999999999999999999999984  3456654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.20  E-value=1.2e-11  Score=104.95  Aligned_cols=55  Identities=31%  Similarity=0.474  Sum_probs=48.0

Q ss_pred             HHhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhhcc
Q psy310          176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWLLE  230 (240)
Q Consensus       176 ~~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~~~  230 (240)
                      .+...++++.|++++||+|++||+++|+|++|||||||+|+|.|+.+|  +++|+.-
T Consensus        13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G   69 (263)
T COG1127          13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG   69 (263)
T ss_pred             eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence            345567899999999999999999999999999999999999999555  4777643

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.20  E-value=1.6e-11  Score=104.12  Aligned_cols=44  Identities=32%  Similarity=0.451  Sum_probs=39.2

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   64 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF   64 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            79999999999999999999999999999999999954  345544

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.20  E-value=1.7e-11  Score=104.85  Aligned_cols=48  Identities=40%  Similarity=0.604  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   60 (236)
T TIGR03864        11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV   60 (236)
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            345679999999999999999999999999999999999943  356655

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.20  E-value=1.7e-11  Score=104.88  Aligned_cols=45  Identities=47%  Similarity=0.661  Sum_probs=40.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   60 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI   60 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence            6799999999999999999999999999999999999543  56654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.2e-11  Score=106.85  Aligned_cols=48  Identities=29%  Similarity=0.470  Sum_probs=42.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-------chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-------RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-------~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+       +++|+
T Consensus        17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   71 (254)
T PRK14273         17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY   71 (254)
T ss_pred             eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence            4456799999999999999999999999999999999999653       67765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.20  E-value=1.7e-11  Score=104.96  Aligned_cols=49  Identities=35%  Similarity=0.582  Sum_probs=42.5

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .+..+.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~   80 (236)
T cd03267          30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV   80 (236)
T ss_pred             ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            3456789999999999999999999999999999999999844  356654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.20  E-value=1.7e-11  Score=103.35  Aligned_cols=44  Identities=34%  Similarity=0.521  Sum_probs=39.6

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   64 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV   64 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence            799999999999999999999999999999999999543  45655

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.20  E-value=1.5e-11  Score=104.36  Aligned_cols=41  Identities=46%  Similarity=0.728  Sum_probs=38.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+.
T Consensus        10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34567999999999999999999999999999999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.20  E-value=1.8e-11  Score=104.38  Aligned_cols=43  Identities=42%  Similarity=0.569  Sum_probs=38.8

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      .+|+++||+|++||+++|+|+||||||||+++|+|+..+  ++++
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~   63 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL   63 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            799999999999999999999999999999999999544  4553

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=1.7e-11  Score=105.00  Aligned_cols=48  Identities=27%  Similarity=0.535  Sum_probs=41.4

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   62 (241)
T PRK10895         13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII   62 (241)
T ss_pred             eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            4456799999999999999999999999999999999998543  45543

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.19  E-value=1.7e-11  Score=106.07  Aligned_cols=43  Identities=35%  Similarity=0.665  Sum_probs=39.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus        14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p   56 (251)
T PRK09544         14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP   56 (251)
T ss_pred             ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4456799999999999999999999999999999999998543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.19  E-value=1.3e-11  Score=107.13  Aligned_cols=48  Identities=38%  Similarity=0.602  Sum_probs=42.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-----chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-----RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-----~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+     +++|+
T Consensus        14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~   66 (262)
T PRK09984         14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL   66 (262)
T ss_pred             eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE
Confidence            3456799999999999999999999999999999999999654     57766

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.19  E-value=1.8e-11  Score=102.83  Aligned_cols=45  Identities=31%  Similarity=0.553  Sum_probs=40.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   60 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV   60 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            579999999999999999999999999999999999944  356654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.19  E-value=1.8e-11  Score=108.77  Aligned_cols=49  Identities=29%  Similarity=0.481  Sum_probs=42.3

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .++++.+|+++||+|.+||++||+|+||||||||+++|+|+..  .+++|+
T Consensus        13 ~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~   63 (303)
T TIGR01288        13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV   63 (303)
T ss_pred             EeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            3455679999999999999999999999999999999999854  356654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.19  E-value=1.9e-11  Score=103.44  Aligned_cols=46  Identities=37%  Similarity=0.702  Sum_probs=41.3

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   61 (222)
T PRK10908         14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF   61 (222)
T ss_pred             CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            4679999999999999999999999999999999999954  467765

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.19  E-value=2.1e-11  Score=100.19  Aligned_cols=48  Identities=40%  Similarity=0.644  Sum_probs=41.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus         9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~   58 (180)
T cd03214           9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL   58 (180)
T ss_pred             ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            3446799999999999999999999999999999999998543  45544

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.4e-11  Score=106.68  Aligned_cols=48  Identities=29%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~   68 (258)
T PRK14241         14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL   68 (258)
T ss_pred             ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence            445679999999999999999999999999999999999964       467765

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.19  E-value=1.4e-11  Score=103.15  Aligned_cols=46  Identities=33%  Similarity=0.511  Sum_probs=41.4

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-----cchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-----LRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-----~~~~~~  228 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..     .+++|+
T Consensus        19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i   69 (202)
T cd03233          19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY   69 (202)
T ss_pred             CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence            5679999999999999999999999999999999999965     456654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.5e-11  Score=106.22  Aligned_cols=48  Identities=31%  Similarity=0.515  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-------ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-------ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-------~~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+.       ..+++|+
T Consensus        16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   70 (253)
T PRK14242         16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL   70 (253)
T ss_pred             ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence            44567999999999999999999999999999999999983       3467765

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=1.5e-11  Score=106.18  Aligned_cols=48  Identities=31%  Similarity=0.457  Sum_probs=42.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..       .+++|+
T Consensus        14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~   68 (253)
T PRK14267         14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL   68 (253)
T ss_pred             eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence            345679999999999999999999999999999999999954       467766

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.19  E-value=2.3e-11  Score=96.73  Aligned_cols=47  Identities=32%  Similarity=0.440  Sum_probs=40.9

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .+..+++++||++++||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        11 ~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~   59 (144)
T cd03221          11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW   59 (144)
T ss_pred             CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence            34579999999999999999999999999999999999844  456654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.19  E-value=1.9e-11  Score=106.22  Aligned_cols=48  Identities=35%  Similarity=0.609  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~   71 (257)
T PRK11247         22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA   71 (257)
T ss_pred             ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence            445679999999999999999999999999999999999854  356654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.19  E-value=2e-11  Score=105.07  Aligned_cols=48  Identities=33%  Similarity=0.610  Sum_probs=41.4

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   62 (250)
T PRK11264         13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV   62 (250)
T ss_pred             ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence            445679999999999999999999999999999999999854  345543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.18  E-value=2.3e-11  Score=106.26  Aligned_cols=52  Identities=31%  Similarity=0.429  Sum_probs=44.5

Q ss_pred             HhcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       177 ~~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +...++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        30 ~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i   83 (269)
T cd03294          30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI   83 (269)
T ss_pred             hhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence            34456778899999999999999999999999999999999999544  45554

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=2e-11  Score=106.28  Aligned_cols=47  Identities=30%  Similarity=0.516  Sum_probs=40.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+  ++++
T Consensus        21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   69 (265)
T PRK10575         21 VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL   69 (265)
T ss_pred             ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEE
Confidence            4456899999999999999999999999999999999999543  4553

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.18  E-value=2.2e-11  Score=106.37  Aligned_cols=48  Identities=35%  Similarity=0.595  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   66 (269)
T PRK11831         17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF   66 (269)
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            455679999999999999999999999999999999999954  456665

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.18  E-value=2.2e-11  Score=103.45  Aligned_cols=44  Identities=43%  Similarity=0.597  Sum_probs=39.1

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~   69 (228)
T PRK10584         24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL   69 (228)
T ss_pred             EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence            59999999999999999999999999999999999944  345543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.18  E-value=2.2e-11  Score=104.26  Aligned_cols=48  Identities=31%  Similarity=0.535  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~   60 (240)
T PRK09493         11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV   60 (240)
T ss_pred             ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            345679999999999999999999999999999999999944  456665

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.7e-11  Score=105.63  Aligned_cols=48  Identities=31%  Similarity=0.470  Sum_probs=41.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14240         13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLL   67 (250)
T ss_pred             ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence            345679999999999999999999999999999999999743       367755

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.18  E-value=2.3e-11  Score=102.75  Aligned_cols=45  Identities=42%  Similarity=0.643  Sum_probs=40.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   64 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF   64 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            469999999999999999999999999999999999844  456655

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.18  E-value=2.4e-11  Score=102.51  Aligned_cols=49  Identities=29%  Similarity=0.458  Sum_probs=42.1

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        20 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   70 (214)
T PRK13543         20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI   70 (214)
T ss_pred             ecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence            3445679999999999999999999999999999999999843  356654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=2.3e-11  Score=104.03  Aligned_cols=48  Identities=31%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~   64 (237)
T PRK11614         15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF   64 (237)
T ss_pred             eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence            345679999999999999999999999999999999999854  345543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.7e-11  Score=106.97  Aligned_cols=48  Identities=35%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..       -+++|+
T Consensus        29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~   83 (267)
T PRK14235         29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL   83 (267)
T ss_pred             ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence            445679999999999999999999999999999999999854       467765

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=2.4e-11  Score=104.30  Aligned_cols=48  Identities=35%  Similarity=0.565  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   62 (241)
T PRK14250         13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI   62 (241)
T ss_pred             eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            345679999999999999999999999999999999999843  456665

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.18  E-value=2.4e-11  Score=104.82  Aligned_cols=48  Identities=35%  Similarity=0.342  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   62 (253)
T TIGR02323        13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY   62 (253)
T ss_pred             eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            3456799999999999999999999999999999999999544  45654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=2.4e-11  Score=103.70  Aligned_cols=45  Identities=40%  Similarity=0.622  Sum_probs=40.0

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   68 (233)
T PRK11629         22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF   68 (233)
T ss_pred             eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            469999999999999999999999999999999999943  456654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=2.4e-11  Score=104.21  Aligned_cols=48  Identities=31%  Similarity=0.412  Sum_probs=42.3

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      +..+.+|+++||+|.+||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   61 (242)
T PRK11124         12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI   61 (242)
T ss_pred             ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            34567999999999999999999999999999999999995  4467765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.18  E-value=2.4e-11  Score=104.11  Aligned_cols=48  Identities=31%  Similarity=0.542  Sum_probs=41.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~   61 (242)
T TIGR03411        12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF   61 (242)
T ss_pred             cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            345679999999999999999999999999999999999843  356655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.18  E-value=2.5e-11  Score=105.21  Aligned_cols=48  Identities=33%  Similarity=0.414  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   65 (258)
T PRK11701         16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY   65 (258)
T ss_pred             cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            445679999999999999999999999999999999999954  356655

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.18  E-value=2.2e-11  Score=103.17  Aligned_cols=43  Identities=47%  Similarity=0.623  Sum_probs=40.0

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      +++.+|++|+|.|.+||+|||||++|||||||+|+|+|+..++
T Consensus        15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t   57 (258)
T COG3638          15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT   57 (258)
T ss_pred             CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence            6788999999999999999999999999999999999985544

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=2.1e-11  Score=106.48  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   60 (271)
T PRK13638         11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW   60 (271)
T ss_pred             cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence            3456799999999999999999999999999999999998543  45544

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.17  E-value=2.4e-11  Score=104.54  Aligned_cols=48  Identities=35%  Similarity=0.507  Sum_probs=42.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..       .+++|+
T Consensus        11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~   65 (247)
T TIGR00972        11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF   65 (247)
T ss_pred             ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence            345579999999999999999999999999999999999954       457765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.17  E-value=2.5e-11  Score=104.71  Aligned_cols=48  Identities=35%  Similarity=0.502  Sum_probs=41.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (252)
T TIGR03005        10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV   59 (252)
T ss_pred             eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            345679999999999999999999999999999999999854  356654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=2.4e-11  Score=107.12  Aligned_cols=45  Identities=31%  Similarity=0.543  Sum_probs=39.9

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||++||+|+||||||||+++|+|+..+  +++++
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~   66 (287)
T PRK13637         20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII   66 (287)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEE
Confidence            4699999999999999999999999999999999999544  45544

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.17  E-value=2.1e-11  Score=105.14  Aligned_cols=48  Identities=33%  Similarity=0.452  Sum_probs=42.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++.+.+|+++||+|.+||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        14 ~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i   68 (251)
T PRK14251         14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKF   68 (251)
T ss_pred             ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEE
Confidence            445679999999999999999999999999999999999954       466654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.17  E-value=2.9e-11  Score=103.72  Aligned_cols=45  Identities=22%  Similarity=0.527  Sum_probs=40.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++|+
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   60 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI   60 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            5799999999999999999999999999999999999543  56655

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.17  E-value=2.8e-11  Score=104.66  Aligned_cols=48  Identities=38%  Similarity=0.587  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   61 (255)
T PRK11231         12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL   61 (255)
T ss_pred             ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence            455689999999999999999999999999999999999843  345544

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.17  E-value=3.1e-11  Score=98.06  Aligned_cols=40  Identities=38%  Similarity=0.611  Sum_probs=37.4

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   53 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW   53 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5799999999999999999999999999999999999543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.16  E-value=2.3e-11  Score=104.80  Aligned_cols=48  Identities=38%  Similarity=0.679  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC----cccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY----KILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~----~~~~~~~~  228 (240)
                      ++++.+|+++||+|++||++||+|+||||||||+++|+|+    ...+++|+
T Consensus        17 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~   68 (252)
T CHL00131         17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF   68 (252)
T ss_pred             eCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE
Confidence            3456799999999999999999999999999999999997    23466655

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=2.8e-11  Score=104.50  Aligned_cols=48  Identities=31%  Similarity=0.543  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+  +++++
T Consensus        15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~   64 (255)
T PRK11300         15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL   64 (255)
T ss_pred             ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence            4456799999999999999999999999999999999999443  45544

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.16  E-value=3e-11  Score=105.87  Aligned_cols=43  Identities=42%  Similarity=0.618  Sum_probs=39.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus        11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p   53 (272)
T PRK13547         11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG   53 (272)
T ss_pred             ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4456799999999999999999999999999999999998543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.16  E-value=3e-11  Score=104.81  Aligned_cols=48  Identities=48%  Similarity=0.690  Sum_probs=41.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~   61 (258)
T PRK13548         12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL   61 (258)
T ss_pred             eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            445679999999999999999999999999999999999843  456644

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.16  E-value=3e-11  Score=107.20  Aligned_cols=48  Identities=33%  Similarity=0.535  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||++||+|+||||||||+++|+|+..  .+++|+
T Consensus        12 ~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i   61 (301)
T TIGR03522        12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV   61 (301)
T ss_pred             ECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            456789999999999999999999999999999999999943  445654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.16  E-value=3.3e-11  Score=102.11  Aligned_cols=48  Identities=29%  Similarity=0.527  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc--ccchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK--ILRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~--~~~~~~~  228 (240)
                      +.++.+|+++||+|++||+++|+|+||||||||+++|+|+.  ..+++|+
T Consensus        10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   59 (223)
T TIGR03740        10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF   59 (223)
T ss_pred             ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            34567999999999999999999999999999999999984  4456665

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.16  E-value=3.2e-11  Score=98.31  Aligned_cols=44  Identities=43%  Similarity=0.632  Sum_probs=39.2

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      .+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~   61 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI   61 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence            69999999999999999999999999999999999944  345544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.16  E-value=2.5e-11  Score=105.04  Aligned_cols=46  Identities=28%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc------chhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL------RQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~------~~~~~  228 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+      +++|+
T Consensus        15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~   66 (254)
T PRK10418         15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLL   66 (254)
T ss_pred             ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEE
Confidence            45799999999999999999999999999999999999654      77765

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=2.5e-11  Score=104.71  Aligned_cols=48  Identities=33%  Similarity=0.488  Sum_probs=41.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      +.++.+|+++||+|.+||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~   68 (251)
T PRK14270         14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLL   68 (251)
T ss_pred             ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEE
Confidence            345679999999999999999999999999999999999854       367755

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=2.5e-11  Score=104.62  Aligned_cols=48  Identities=33%  Similarity=0.560  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~   67 (250)
T PRK14247         13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL   67 (250)
T ss_pred             ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence            345679999999999999999999999999999999999954       466654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=3.1e-11  Score=106.44  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=39.8

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..|  +++++
T Consensus        20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~   66 (287)
T PRK13641         20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI   66 (287)
T ss_pred             ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            4699999999999999999999999999999999999554  45543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.16  E-value=1.7e-11  Score=101.72  Aligned_cols=48  Identities=31%  Similarity=0.476  Sum_probs=42.3

Q ss_pred             hcccccce-eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccch
Q psy310          178 YNRIHEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ  225 (240)
Q Consensus       178 ~~~~~~~~-il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~  225 (240)
                      .+++++++ +++||||.++.||++||+|+|||||||++|+|++|.+|+|
T Consensus         8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~   56 (245)
T COG4555           8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS   56 (245)
T ss_pred             hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC
Confidence            34455555 8999999999999999999999999999999999988774

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.15  E-value=2.6e-11  Score=105.75  Aligned_cols=48  Identities=31%  Similarity=0.490  Sum_probs=42.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..       .+++++
T Consensus        30 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   84 (267)
T PRK14237         30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY   84 (267)
T ss_pred             ECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence            456789999999999999999999999999999999999964       467755

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.15  E-value=3.6e-11  Score=101.90  Aligned_cols=45  Identities=42%  Similarity=0.571  Sum_probs=40.4

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~   67 (224)
T TIGR02324        21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV   67 (224)
T ss_pred             eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            469999999999999999999999999999999999954  467755

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=3.2e-11  Score=106.26  Aligned_cols=45  Identities=24%  Similarity=0.416  Sum_probs=39.9

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +.+|+++||+|.+||++||+|+||||||||+++|+|+..  .+++++
T Consensus        20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~   66 (286)
T PRK13646         20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV   66 (286)
T ss_pred             cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            469999999999999999999999999999999999944  456654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.5e-11  Score=104.29  Aligned_cols=48  Identities=35%  Similarity=0.497  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-------cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-------LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-------~~~~~~  228 (240)
                      ++++.+|+++||+|.+||++||+|+||||||||+++|+|+..       .+++|+
T Consensus        22 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~   76 (258)
T PRK14268         22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI   76 (258)
T ss_pred             eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE
Confidence            445679999999999999999999999999999999999854       466655

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.15  E-value=5.8e-11  Score=101.74  Aligned_cols=134  Identities=16%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC---------------CCCCcc--------EEEECCccC
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK---------------TSGTEG--------SITINGHER   94 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~---------------~~~~~G--------~V~v~g~~~   94 (240)
                      .|++..++++++     |++++|+||||||||||+++|.+++               ..+.+|        +|.+.+.+.
T Consensus        11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~   85 (243)
T cd03272          11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN   85 (243)
T ss_pred             CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence            455667777776     8899999999999999999998431               112233        444444221


Q ss_pred             C------chhhhhhceEEcccccccc-cccHHHHHHHHHHHhcCCCccH-HHHHHHHHHhhhcCCcchhhhhccCCCCCc
Q psy310           95 N------LSQFRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGKDLTK-AARKDVVRTLFYRSDTNHAQRCFLSGPWGT  166 (240)
Q Consensus        95 ~------~~~~~~~~g~v~Q~~~~~~-~ltv~e~l~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  166 (240)
                      .      ....++.+++++|+..+.. ..+..+...+............ ...+..+..+.   .+...........+++
T Consensus        86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~---~l~~~~~~~~~~lS~G  162 (243)
T cd03272          86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLT---NMKQDEQQEMQQLSGG  162 (243)
T ss_pred             ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhh---hccccccccccccCHH
Confidence            1      0123455788888777665 3466655544332222111000 00011111121   1222222344457788


Q ss_pred             hhhHHHHHHHHhc
Q psy310          167 FESSVLLALAMYN  179 (240)
Q Consensus       167 ~~~~~~~~~~~~~  179 (240)
                      +++++.++++++.
T Consensus       163 ~~~r~~la~~l~~  175 (243)
T cd03272         163 QKSLVALALIFAI  175 (243)
T ss_pred             HHHHHHHHHHHHH
Confidence            8999999998863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3e-11  Score=104.25  Aligned_cols=48  Identities=38%  Similarity=0.606  Sum_probs=42.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-------chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-------RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-------~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+       +++|+
T Consensus        14 ~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~   68 (251)
T PRK14249         14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL   68 (251)
T ss_pred             ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEE
Confidence            3456799999999999999999999999999999999999665       67766

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=3.6e-11  Score=105.34  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=40.6

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+|+++||+|++||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   61 (274)
T PRK13644         14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV   61 (274)
T ss_pred             CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            3569999999999999999999999999999999999944  456655

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.7e-11  Score=104.64  Aligned_cols=48  Identities=35%  Similarity=0.639  Sum_probs=41.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++++
T Consensus        17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~   66 (265)
T PRK10253         17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL   66 (265)
T ss_pred             ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence            445679999999999999999999999999999999999854  345544

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.9e-11  Score=104.88  Aligned_cols=41  Identities=37%  Similarity=0.592  Sum_probs=38.0

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..+
T Consensus        19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   59 (272)
T PRK15056         19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL   59 (272)
T ss_pred             CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46799999999999999999999999999999999999544

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.14  E-value=4e-11  Score=104.37  Aligned_cols=46  Identities=33%  Similarity=0.503  Sum_probs=40.7

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..  .+++|+
T Consensus        23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   70 (265)
T TIGR02769        23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF   70 (265)
T ss_pred             ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            3679999999999999999999999999999999999954  346655

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		2e-07
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		5e-07
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		8e-07
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-06
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-06
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		6e-06
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		7e-06
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-06
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		1e-04
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		8e-06
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-04
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-06
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		9e-06
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		2e-05
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		2e-05
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		4e-05
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		5e-05
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		5e-05
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		5e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		5e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		5e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		5e-05
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		5e-05
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		6e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		7e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		8e-04
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		7e-05
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		8e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		7e-05
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		9e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-04
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		1e-04
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		1e-04
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		1e-04
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		1e-04
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		1e-04
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-04
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-04
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		2e-04
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		2e-04
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-04
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		2e-04
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		3e-04
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-04
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-04
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-04
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-04
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		3e-04
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		3e-04
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-04
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		4e-04
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		4e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		4e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		4e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		5e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		8e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		6e-04
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		6e-04
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		9e-04
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		8e-04
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		8e-04

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
            ++ ++  VS  + SGE+ AI+GP+GAGKSTLL +LTGY  S + G   + G   N  Q 
Sbjct: 22  QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-LSPSHGECHLLGQNLNSWQP 80
Query: 100 RKLS---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT 145
           + L+     + Q ++L    +V E + +  A   G    +A ++ + +T
Sbjct: 81  KALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT 129

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           ++L A  ++  + ++ ++  VS  + SGE+ AI+GP+GAGKSTLL +LTGY
Sbjct: 10  ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           ILK +S  ++ GE  +I+G SG+GKSTLL IL G   + TEG + + G E + +  ++LS
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 104 C-------YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
                   ++ Q + L   LT  E + +   LK+GK   +A  +
Sbjct: 78  LLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKER 120

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           NE  ILK ++  +  GE  A +G SG GKSTL+N++  +    T G I I+GH  N+  F
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGH--NIKDF 408
Query: 100 -----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR----KDVVRTLFYRS 150
                R     + QDN L ++ TV+E + +       +++ +AA+     D +  L    
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 151 DTNHAQR 157
           DT   +R
Sbjct: 468 DTEVGER 474

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQFRK 101
           T L +++ +++ GE  A++GPSG+GKSTLL  + G YK   T G I  +  E+++++   
Sbjct: 17  TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFD--EKDVTELPP 72
Query: 102 LS---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC 158
                  + Q+  L+ ++TV +  N+A  L    +L KA R+++ + +   +   H  + 
Sbjct: 73  KDRNVGLVFQNWALYPHMTVYK--NIAFPL----ELRKAPREEIDKKVREVAKMLHIDKL 126
Query: 159 FLSGPW 164
               PW
Sbjct: 127 LNRYPW 132

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITING-----HERN 95
           +LK ++  +R GE+  ++GPSG+GKST    LN+L  +     EG I I+G      + N
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTN 73
Query: 96  LSQFRKLSCYIMQDNQLHANLTV 118
           L++ R+    + Q   L  ++TV
Sbjct: 74  LNKVREEVGMVFQRFNLFPHMTV 96

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITING-----HERN 95
           +LK ++  +R GE+  ++GPSG+GKST    LN+L  +     EG I I+G      + N
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTN 94
Query: 96  LSQFRKLSCYIMQDNQLHANLTV 118
           L++ R+    + Q   L  ++TV
Sbjct: 95  LNKVREEVGMVFQRFNLFPHMTV 117

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
          LK+V+  ++ GE  +IMGPSG+GKST+LNI+ G     TEG + I+  + N
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTN 70

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           LK+V+  ++ GE  +IMGPSG+GKST+LNI+
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
          LK+V+  ++ GE  +IMGPSG+GKST+LNI+ G     TEG + I+  + N
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTN 70

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           LK+V+  ++ GE  +IMGPSG+GKST+LNI+
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
           ++ VS ++R GE+  ++GPSG+GK+T+L ++ G +   T+G + I G    +L   ++  
Sbjct: 31  VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLPPQKRNV 89
Query: 104 CYIMQDNQLHANLTVEEAMNVATAL---KLGKDLTKAARKDVVRTLFYRSDTN 153
             + Q+  L  ++TV +  NV+  L   ++ KD   A  ++++R +   S  N
Sbjct: 90  GLVFQNYALFQHMTVYD--NVSFGLREKRVPKDEMDARVRELLRFMRLESYAN 140

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV---------------RTLFY 148
              +++N +  +       +V  A +L +D++K A KD +               R    
Sbjct: 82  PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 141
Query: 149 RSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
           R+    A    L  P+G          FES V   +A   RI
Sbjct: 142 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
              +++N +  +       +V  A +L +D++K A KD +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK+++  +  GE+ AI G +G+GK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKD 141
              +++N +  +       +V  A +L +D+TK A +D
Sbjct: 112 PGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQD 149

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV 143
              +++N + A ++ +E    +V  A +L +D++K A KD +
Sbjct: 112 PGTIKEN-IIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 152

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLS 103
           L ++S ++ SGE   I+GP+GAGK+  L ++ G+    + G I ++G +  +LS  +   
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHDI 74
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKD 133
            ++ Q+  L  ++ V++ +     +K  KD
Sbjct: 75  AFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 12  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 70
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 71  DPNWLRRQVGVVLQDNVL 88

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 18  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 77  DPNWLRRQVGVVLQDNVL 94

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 12  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 70
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 71  DPNWLRRQVGVVLQDNVL 88

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 14  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 72
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 73  DPNWLRRQVGVVLQDNVL 90

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 18  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 77  DPNWLRRQVGVVLQDNVL 94

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 18  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 76
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 77  DPNWLRRQVGVVLQDNVL 94

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-----HERNLSQ 98
           +L  +S  L  GE+  I+G SG GK+TLL  L G++   + G I+++G        NL  
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-GEISLSGKTIFSKNTNLPV 77
Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
             +   Y++Q+  L  +LTV    N+A  L  GK  T   R+ +
Sbjct: 78  RERRLGYLVQEGVLFPHLTVYR--NIAYGLGNGKGRTAQERQRI 119

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G  TSG +GSI   G         
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
           KL+ +
Sbjct: 70  KLALH 74

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G
Sbjct: 10  VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G  TSG +GSI   G         
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
           KL+ +
Sbjct: 70  KLALH 74

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G
Sbjct: 10  VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 35  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV---------------RTL 146
              +++N +   ++ +E    +V  A +L +D++K A KD +               R  
Sbjct: 94  PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 147 FYRSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
             R+    A    L  P+G          FES V   +A   RI
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 196

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV---------------RTL 146
              +++N +   ++ +E    +V  A +L +D++K A KD +               R  
Sbjct: 82  PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 147 FYRSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
             R+    A    L  P+G          FES V   +A   RI
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +P+   IL +++  ++ GE+  I+G +G+GKSTL  ++  +      G + I+GH+  L+
Sbjct: 14  KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 72
Query: 98  Q---FRKLSCYIMQDNQL 112
                R+    ++QDN L
Sbjct: 73  DPNWLRRQVGVVLQDNVL 90

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK+++  +  GE+ AI G +G+GK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
              +++N + + ++ +E    +V  A +L +D+TK A +D
Sbjct: 112 PGTIKENII-SGVSYDEYRYKSVVKACQLQQDITKFAEQD 150

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKDVV 143
              +++N +   ++ +E    +V  A +L +D++K A KD +
Sbjct: 112 PGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNI 152

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK+++  +  GE+ AI G +G+GK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
              +++N +   ++ +E    +V  A +L +D+TK A +D
Sbjct: 112 PGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK+++  +  GE+ AI G +G+GK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
              +++N +   ++ +E    +V  A +L +D+TK A +D
Sbjct: 112 PGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK+++  +  GE+ AI G +G+GK++LL ++ G +   +EG I  +G     SQF  + 
Sbjct: 53  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 104 CYIMQDNQLHANLTVEE--AMNVATALKLGKDLTKAARKD 141
              +++N +   ++ +E    +V  A +L +D+TK A +D
Sbjct: 112 PGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQD 150

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 20/129 (15%)
Query: 48  VSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERN--LSQFRKLSC 104
           VS  ++ GE  A++GPSG GK+T L +L G YK   T G I  +    N    ++R++  
Sbjct: 22  VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGM 79
Query: 105 YIMQDNQLHANLTVEEAMNVATAL---KLGKD-----LTKAARKDVVRTLFYRSDTN--- 153
            + Q+  L+ ++TV E  N+A  L   ++ KD     + + ARK ++  L  R  T    
Sbjct: 80  -VFQNYALYPHMTVFE--NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSG 136
Query: 154 -HAQRCFLS 161
              QR  L+
Sbjct: 137 GQQQRVALA 145

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN 95
          LK+V+  ++ GE  +I GPSG+GKST LNI+ G     TEG + I+  + N
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTEGEVYIDNIKTN 70

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTE-GSITINGH 92
          +TILK V+  +  GE+ A+MGP+GAGKSTL  IL G      E G I ++G 
Sbjct: 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           ++  I  +TILK V+  +  GE+ A+MGP+GAGKSTL  IL G
Sbjct: 9   LWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
           N   +LK V+    +G++  ++G +G+GK+TLL IL G   +   G I ++G   +    
Sbjct: 22  NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA--GEIFLDGSPADPFLL 79
Query: 100 RKLSCYIMQDNQLH-ANLTVEEAMNVATALKL 130
           RK   Y+ Q+        TVEE  +VA +L++
Sbjct: 80  RKNVGYVFQNPSSQIIGATVEE--DVAFSLEI 109

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT------EGSITINGHERNLSQ 98
           L +V+  + +GE   I+GPSGAGK+T + I+ G     T      +  +  NG      +
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVA---TALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
            RK+   + Q   L+ NLT  E  N+A   T +K+ K+  +   ++V + L    D +H 
Sbjct: 81  DRKIGM-VFQTWALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKIL----DIHHV 133
Query: 156 QRCFLSGPWGTFESSVLLALAM 177
              F     G  +  V LA A+
Sbjct: 134 LNHFPRELSGAQQQRVALARAL 155

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E T L  +SG +R+GE+  ++GP+GAGKSTLL    G  TSG +GSI   G         
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
           KL+ +
Sbjct: 70  KLALH 74

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E T L  +SG +R+GE+  ++GP+GAGKSTLL    G  TSG +GSI   G         
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSG-KGSIQFAGQPLEAWSAT 69
Query: 101 KLSCY 105
           KL+ +
Sbjct: 70  KLALH 74

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERNLSQFR 100
           IL+ ++ R+ +G+  A++G SG GKST++++L  Y     +G ITI+G    + NL   R
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLR 491
Query: 101 KLSCYIMQDNQLHANLTVEEAMNV 124
           K    + Q+  L  N T+EE +++
Sbjct: 492 KNVAVVSQEPALF-NCTIEENISL 514

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT------EGSITINGHERNLSQ 98
           L +V+  + +GE   I+GPSGAGK+T + I+ G     T      +  +  NG      +
Sbjct: 21  LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVA---TALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
            RK+   + Q   L+ NLT  E  N+A   T +K+ K+  +   ++V + L      NH 
Sbjct: 81  DRKIGM-VFQTWALYPNLTAFE--NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 156 QRCFLSG 162
            R    G
Sbjct: 138 PRELSGG 144

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
           E  I +  S  + SG +TA++GPSG+GKST+L++L       + G+I+++GH+
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHD 407

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQ   + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
              +++N +  +       +V  A +L +D++K A KD +
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 151

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLS 103
           +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G     SQ   + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 104 CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV---------------RTLFY 148
              +++N +  +       +V  A +L +D++K A KD +               R    
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171
Query: 149 RSDTNHAQRCFLSGPWG---------TFESSVLLALAMYNRI 181
           R+    A    L  P+G          FES V   +A   RI
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNL--S 97
           +K +LK ++  ++ G+  A++GP+G+GK+T++N+L  +      G I ++G + R +  S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKRS 425
Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 139
             R     ++QD  L +  TV+E +         +++ +AA+
Sbjct: 426 SLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAK 466

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE 93
           E  I +  S  + SG +TA++GPSG+GKST+L++L       + G+I+++GH+
Sbjct: 387 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS-GTISLDGHD 438

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
          L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
          L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---L 96
           + + IL+ +S   +   + A  GPSG GKST+ ++L  +    T G ITI+G   +   L
Sbjct: 13  DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNISL 71
Query: 97  SQFRKLSCYIMQDNQLHA 114
             +R    ++ QD+ + A
Sbjct: 72  ENWRSQIGFVSQDSAIMA 89

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER--NLSQ 98
           E  + K ++  +  GE    +GPSG GKSTLL ++ G +T  T G + I G +R  +   
Sbjct: 15  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFI-GEKRMNDTPP 72
Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
             +    + Q   L+ +L+V E  N++  LKL       A+K+V+
Sbjct: 73  AERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E  + K ++  +  GE    +GPSG GKSTLL ++ G +T  T G + I     N +   
Sbjct: 15  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA 73
Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           +     + Q   L+ +L+V E  N++  LKL       A+K+V+
Sbjct: 74  ERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          KTILK +S ++  G+   + G +GAGK+TLLNIL  Y+ + T G++ + G
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNLFG 82

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           E  + K ++  +  GE    +GPSG GKSTLL ++ G +T  T G + I     N +   
Sbjct: 15  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPA 73
Query: 101 KLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV 143
           +     + Q   L+ +L+V E  N++  LKL       A+K+V+
Sbjct: 74  ERGVGMVFQSYALYPHLSVAE--NMSFGLKLA-----GAKKEVI 110

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITINGHE 93
           +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G   Y+ +G  G++   G +
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 66

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G
Sbjct: 11  VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE--RNLSQF 99
           K ILK +S  +  GE+  ++GP+GAGK+T L I++      + G +T+ G        + 
Sbjct: 28  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEV 86
Query: 100 RKLSCYIMQDNQLHANL 116
           RKL  Y+ ++   + N+
Sbjct: 87  RKLISYLPEEAGAYRNM 103

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 177 MYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           +  RI +K ILK +S  +  GE+  ++GP+GAGK+T L I++
Sbjct: 21  LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITINGHE 93
           +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G   Y+ +G  G++   G +
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 85

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G
Sbjct: 30  VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
          L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           L  VS  +  G++T I+GP+G+GKSTL+N++TG+
Sbjct: 23  LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	5e-16
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-14
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-06
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	7e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-06
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	7e-14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-13
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-10
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-13
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	5e-10
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-12
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	4e-12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	5e-10
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	6e-12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	6e-10
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-11
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-11
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	4e-04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-11
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-11
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-09
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-11
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-07
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-10
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-10
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	7e-06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-10
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	7e-10
1ji0_A	240	ABC transporter; ATP binding protein, structural g	3e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-09
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	6e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	6e-06
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-09
1b0u_A	262	Histidine permease; ABC transporter, transport pro	5e-06
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	3e-05
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-09
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-08
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-04
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-09
1g6h_A	257	High-affinity branched-chain amino acid transport	9e-07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-09
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-06
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-09
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	9e-09
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-08
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-05
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	3e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-06
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	4e-08
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	9e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	5e-08
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-07
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	4e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-05
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	4e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	3e-07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-06
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	3e-06
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	7e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-06
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-05
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	6e-05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	6e-05
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	7e-05
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	8e-05
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	7e-05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	7e-05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	1e-04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	9e-05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	1e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	4e-04
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	5e-04
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	5e-04
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	8e-04
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	9e-04

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 73.7 bits (182), Expect = 5e-16
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 22/131 (16%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF- 99
           E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G  +   +GSI   G  + L  + 
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAG--QPLEAWS 67

Query: 100 -----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNH 154
                   + Y+ Q         V     +     L        R +++  +      + 
Sbjct: 68  ATKLALHRA-YLSQQQTPPFATPVWHY--LT----LH--QHDKTRTELLNDVAGALALDD 118

Query: 155 -AQRCF--LSG 162
              R    LSG
Sbjct: 119 KLGRSTNQLSG 129

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK------ILRQLWLLEYSHK 234
           + E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G              L  +S  
Sbjct: 10  VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSAT 69

Query: 235 DLALCR 240
            LAL R
Sbjct: 70  KLALHR 75

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
           K +L+ ++  +  G +    GP+G GK+TLL  ++ Y     +G I  NG    +++ + 
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNGV--PITKVKG 78

Query: 102 LSCYIMQDNQLHANLTVEEAMNVATALK 129
              ++ ++  +   ++VE+ +    +L 
Sbjct: 79  KIFFLPEEIIVPRKISVEDYLKAVASLY 106

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           K +L+ ++  +  G +    GP+G GK+TLL  ++ Y
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 68.1 bits (167), Expect = 7e-14
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
             E+  L++++  +  GE   I+GP+G+GK+TLL  ++G       G+I ING    + +
Sbjct: 15  GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFING--MEVRK 69

Query: 99  FRKLSCYIMQDNQLHA-NLTVEEAMNVATALKLGK 132
            R    Y     + +   +TV +   V    +L  
Sbjct: 70  IRNYIRYSTNLPEAYEIGVTVND--IVYLYEELKG 102

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + +E+  L++++  +  GE   I+GP+G+GK+TLL  ++G
Sbjct: 13  GKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 68.0 bits (167), Expect = 7e-14
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
           P EK  L++VS  +  GE   + G +G+GKSTLL I+ G     T G +  +G  +   +
Sbjct: 17  PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYE 75

Query: 99  FRKLSCYIMQ--DNQLHANLTVEE 120
            R+      Q  ++Q  A   V +
Sbjct: 76  IRRNIGIAFQYPEDQFFAE-RVFD 98

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           EK  L++VS  +  GE   + G +G+GKSTLL I+ G
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGTEGSITINGHER--- 94
             KTILK +S ++  G+   + G +GAGK+TLLNIL  Y   TSGT   + + G      
Sbjct: 32  QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT---VNLFGKMPGKV 88

Query: 95  --NLSQFRKLSCYIMQD--NQLHANLTVEEAMNVATAL 128
             +    R+   ++      +      V +   V +  
Sbjct: 89  GYSAETVRQHIGFVSHSLLEKFQEGERVIDV--VISGA 124

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
             KTILK +S ++  G+   + G +GAGK+TLLNIL  Y
Sbjct: 32  QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ERNLS 97
           ILK +S  ++ GE  +I+G SG+GKSTLL IL G   + TEG + + G       E+ LS
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77

Query: 98  QFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             R     ++ Q + L   LT  E  NV   +       K A++     L
Sbjct: 78  LLRNRKLGFVFQFHYLIPELTALE--NVIVPMLKMGKPKKEAKERGEYLL 125

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 56.7 bits (138), Expect = 5e-10
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           ILK +S  ++ GE  +I+G SG+GKSTLL IL
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--ERNLS 97
            +K ILK +S  +  GE+  ++GP+GAGK+T L I++      + G +T+ G        
Sbjct: 26  GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPH 84

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           + RKL  Y+ ++   + N+   E +            + +  +++V   
Sbjct: 85  EVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERA 130

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +K ILK +S  +  GE+  ++GP+GAGK+T L I++  
Sbjct: 27  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
          + +TILK V+  +  GE+ A+MGP+GAGKSTL  IL G   Y      G I ++G
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV--ERGEILLDG 66

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
            I  +TILK V+  +  GE+ A+MGP+GAGKSTL  IL G   Y +
Sbjct: 12  SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV 57

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 62.6 bits (153), Expect = 6e-12
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 5/55 (9%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKTSGTEGSITING 91
           +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G   Y+   T G++   G
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKG 83

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG---YKI 222
            + +K IL+ +S  +  GE+ AIMGP+G+GKSTL   L G   Y++
Sbjct: 29  SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV 74

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 14/111 (12%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
           +  EK  L  VS  +  G+  A++G SG+GKST+ N+ T  Y      GSI ++GH   +
Sbjct: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRD 409

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
             L+  R+    + Q+  L  N T+    N+A       +  +  R+ + +
Sbjct: 410 YKLTNLRRHFALVSQNVHLF-NDTIAN--NIA----YAAEG-EYTREQIEQ 452

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           EK  L  VS  +  G+  A++G SG+GKST+ N+ T
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 23/114 (20%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING----------- 91
            +L  +S  L  GE+  I+G SG GK+TLL  L G++     G I+++G           
Sbjct: 18  PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-DSGEISLSGKTIFSKNTNLP 76

Query: 92  -HERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
             ER L        Y++Q+  L  +LTV    N+A  L  GK    A  +  + 
Sbjct: 77  VRERRLG-------YLVQEGVLFPHLTVYR--NIAYGLGNGK-GRTAQERQRIE 120

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +L  +S  L  GE+  I+G SG GK+TLL  L G
Sbjct: 18  PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 24/115 (20%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTL---LNILTGYKTSGTEGSITINGHE------RN 95
           L +VS  + +G++  ++G SGAGKSTL   +N+L       TEGS+ ++G E        
Sbjct: 44  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP----TEGSVLVDGQELTTLSESE 99

Query: 96  LSQFRKLSCYIMQDNQLHANL----TVEEAMNVATALKLGKDLTKAARKDVVRTL 146
           L++ R+    I Q    H NL    TV    NVA  L+L     K   K  V  L
Sbjct: 100 LTKARRQIGMIFQ----HFNLLSSRTVFG--NVALPLELDN-TPKDEVKRRVTEL 147

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/28 (46%), Positives = 21/28 (75%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           L +VS  + +G++  ++G SGAGKSTL+
Sbjct: 44  LNNVSLHVPAGQIYGVIGASGAGKSTLI 71

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 21/117 (17%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING------- 91
           P     ++ VS ++R GE+  ++GPSG+GK+T+L ++ G +   T+G + I G       
Sbjct: 25  PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-TKGDVWIGGKRVTDLP 83

Query: 92  -HERNLSQ-FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             +RN+   F        Q+  L  ++TV +  NV+  L+  K + K      VR L
Sbjct: 84  PQKRNVGLVF--------QNYALFQHMTVYD--NVSFGLRE-KRVPKDEMDARVREL 129

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 14/35 (40%), Positives = 26/35 (74%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             ++ VS ++R GE+  ++GPSG+GK+T+L ++ G
Sbjct: 29  RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
                LK+V+  ++ GE  +IMGPSG+GKST+LNI+ G     TEG + I+        +
Sbjct: 16  EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDD 74

Query: 94  RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVA 125
             L++ R+    ++ Q   L   LT  E  NV 
Sbjct: 75  DELTKIRRDKIGFVFQQFNLIPLLTALE--NVE 105

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 18/33 (54%), Positives = 26/33 (78%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
             LK+V+  ++ GE  +IMGPSG+GKST+LNI+
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH-----E 93
            +    LK ++  ++ GE+TAI+G +G GKSTL     G     + G I  +        
Sbjct: 18  SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSR 76

Query: 94  RNLSQFRKLSCYIMQ--DNQLHANLTVEE 120
           + + + R+    + Q  DNQL +  +V +
Sbjct: 77  KGIMKLRESIGIVFQDPDNQLFSA-SVYQ 104

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           LK ++  ++ GE+TAI+G +G GKSTL     G
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
              E   L++++ ++ +G+  A++G SG+GKST+ +++T  Y     EG I ++GH   E
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLRE 409

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVA 125
             L+  R     + Q+  L  N TV    N+A
Sbjct: 410 YTLASLRNQVALVSQNVHLF-NDTVAN--NIA 438

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 27/36 (75%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           E   L++++ ++ +G+  A++G SG+GKST+ +++T
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNL 96
            + + IL+ +S   +   + A  GPSG GKST+ ++L   Y+   T G ITI+G    N+
Sbjct: 12  DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNI 69

Query: 97  SQ--FRKLSCYIMQDNQL 112
           S   +R    ++ QD+ +
Sbjct: 70  SLENWRSQIGFVSQDSAI 87

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
            + IL+ +S   +   + A  GPSG GKST+ ++L
Sbjct: 14  SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RN 95
             NE  ILK ++  +  GE  A +G SG GKSTL+N++   Y    T G I I+GH  ++
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKD 407

Query: 96  LSQ 98
              
Sbjct: 408 FLT 410

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           E  ILK ++  +  GE  A +G SG GKSTL+N++ 
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
               +L    G     E+  +MG +G GK+TL+ +L G      EG       + N+S  
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPDEGQDI---PKLNVSMK 418

Query: 100 RKLSCYIMQD 109
            +        
Sbjct: 419 PQKIAPKFPG 428

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +     +L    G     E+  +MG +G GK+TL+ +L G
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KTSGT---EGSITINGHER 94
           +  +         R G++  ++G +G GKST L IL G      G               
Sbjct: 88  SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147

Query: 95  NLSQFRKLSCYIMQDN--QLHANLTVEE-AMNVATALKLGKDLTKAARKDVVRTLF 147
             S+ +     +++D+   +     V+     +   ++   +L K   +     + 
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
             +         R G++  ++G +G GKST L IL G 
Sbjct: 89  ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLSQ 98
            +  L+ VS  +  G+  A++GPSGAGKST+L +L   Y    + G I I+G +   ++Q
Sbjct: 66  GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQ 123

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
            +  L+ VS  +  G+  A++GPSGAGKST+L +L
Sbjct: 66  GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 56.3 bits (137), Expect = 7e-10
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKL 102
            +K +  ++  G++  ++G +GAGK+T L+ + G   +  +G I  NG +  N       
Sbjct: 21  AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFNGQDITNKPAHVIN 79

Query: 103 S---CYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
                 + +  ++   LTV E  N    L +G    +  ++ + R L
Sbjct: 80  RMGIALVPEGRRIFPELTVYE--N----LMMGA-YNRKDKEGIKRDL 119

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 176 AMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             Y  IH    +K +  ++  G++  ++G +GAGK+T L+ + G
Sbjct: 14  VYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
             E  + + ++  L  G++ A++G +G GKSTLL++L G      +G I +         
Sbjct: 15  QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-IQGKIEV--------- 64

Query: 99  FRKLSCYIMQDNQLHANLTVEE 120
           ++ +  ++ Q        +V +
Sbjct: 65  YQSIG-FVPQFFSSPFAYSVLD 85

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 14/38 (36%), Positives = 25/38 (65%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            E  + + ++  L  G++ A++G +G GKSTLL++L G
Sbjct: 16  AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
                 L+   G +R GE+  I+GP+G GK+T + +L G     TEG +  +       Q
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKVEWDLTVAYKPQ 424

Query: 99  FRKLSCYIMQDNQL 112
           + K   Y     +L
Sbjct: 425 YIKAE-YEGTVYEL 437

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             + +    L+   G +R GE+  I+GP+G GK+T + +L G
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-----YKTSGTEGSITINGHERN 95
               +      ++ G +  I+GP+G GK+T + IL G                I     N
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162

Query: 96  LSQ--FRKL 102
             Q  F +L
Sbjct: 163 ELQNYFERL 171

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
               +      ++ G +  I+GP+G GK+T + IL G
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLS 97
               LKS++  + SG   A++G +G+GKST+  +L   Y     EG I I G      +
Sbjct: 31 TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---AEGDIKIGGKNVNKYN 87

Query: 98 Q 98
          +
Sbjct: 88 R 88

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
           Y +      LKS++  + SG   A++G +G+GKST+  +L
Sbjct: 27  YPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 44  ILKSVSGRLRSGELTAIMGPSGAGKSTLL---NILTGYKTSGTEGSITINGHERNLSQFR 100
           +LK VS + R+G++ +I+G SG+GKST L   N L       +EG+I +NG   NL + +
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP----SEGAIIVNGQNINLVRDK 76

Query: 101 KLSCYIMQDNQLHA 114
                +   NQL  
Sbjct: 77  DGQLKVADKNQLRL 90

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL---NIL 217
           +LK VS + R+G++ +I+G SG+GKST L   N L
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL 55

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 25/151 (16%)

Query: 18  TNNTNNTNNTNTNTNTNNNCEP-----------NEKTILKSVSGRLRSGELTAIMGPSGA 66
            ++ ++ ++++      ++                  +LK ++  +R GE+  ++GPSG+
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGS 61

Query: 67  GKSTLL---NILTGYKTSGTEGSITINGHE-----RNLSQFRKLSCYIMQDNQLHANLTV 118
           GKST L   N+L  +     EG I I+G        NL++ R+    + Q   L  ++TV
Sbjct: 62  GKSTFLRCLNLLEDF----DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117

Query: 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYR 149
               N+  A    +   +   +     L  +
Sbjct: 118 LN--NITLAPMKVRKWPREKAEAKAMELLDK 146

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           +LK ++  +R GE+  ++GPSG+GKST L
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFL 67

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---E 93
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++   Y      G + I+GH    
Sbjct: 18  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLAL 75

Query: 94  RNLSQFRKLSCYIMQDNQL 112
            + +  R+    ++QDN L
Sbjct: 76  ADPNWLRRQVGVVLQDNVL 94

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
               IL +++  ++ GE+  I+G SG+GKSTL  ++
Sbjct: 20  DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
              L+   G ++ GE+  I+GP+G GK+T + +L G     TEG I  +       Q+ K
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKIEWDLTVAYKPQYIK 357

Query: 102 LSCYIMQD 109
                 + 
Sbjct: 358 AD---YEG 362

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           + +    L+   G ++ GE+  I+GP+G GK+T + +L G
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG 334

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 52  LRSGELTAIMGPSGAGKSTLLNILTG-----YKTSGTEGSITINGHERN--LSQFRKL 102
           ++ G +  I+GP+G GKST + IL G                I     N   + F KL
Sbjct: 44  VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 194 LRSGELTAIMGPSGAGKSTLLNILTG 219
           ++ G +  I+GP+G GKST + IL G
Sbjct: 44  VKEGMVVGIVGPNGTGKSTAVKILAG 69

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE 93
          L  VS  +  G++T I+GP+G+GKSTL+N++TG  K    EG +     +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKD 70

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 47.5 bits (114), Expect = 9e-07
 Identities = 17/33 (51%), Positives = 26/33 (78%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           L  VS  +  G++T I+GP+G+GKSTL+N++TG
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 55

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRK 101
              L   +G  + GE+  I+GP+G GK+T   IL G + +  EGS+T     + LS   +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG-EITADEGSVTPEK--QILSYKPQ 337

Query: 102 LSCYIMQDNQLHANLTVEEAM 122
               I  +        +E A 
Sbjct: 338 ---RIFPNYDGTVQQYLENAS 355

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              L   +G  + GE+  I+GP+G GK+T   IL G
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 52  LRSGELTAIMGPSGAGKSTLLNILTGY-KTSGTEGSITINGHERNLSQFR--KLSCY--- 105
            ++  +  ++G +G GK+T+L IL G    +  + +  + G +  L +FR  ++  Y   
Sbjct: 22  PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKE 80

Query: 106 IMQDNQ 111
           +  +  
Sbjct: 81  LYSNEL 86

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 194 LRSGELTAIMGPSGAGKSTLLNILTGYKI 222
            ++  +  ++G +G GK+T+L IL G  I
Sbjct: 22  PKNNTILGVLGKNGVGKTTVLKILAGEII 50

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HE 93
              L ++S ++ SGE   I+GP+GAGK+  L ++ G+      G I ++G         +
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK 71

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAAR 139
            +++       ++ Q+  L  ++ V++  N+   +++ K +    R
Sbjct: 72  HDIA-------FVYQNYSLFPHMNVKK--NLEFGMRMKK-IKDPKR 107

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              L ++S ++ SGE   I+GP+GAGK+  L ++ G
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 7e-09
 Identities = 31/182 (17%), Positives = 56/182 (30%), Gaps = 49/182 (26%)

Query: 95  NLSQFRK-LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
               F     C  +QD    + L+ EE  ++   +     ++   R   +          
Sbjct: 25  FEDAFVDNFDCKDVQD-MPKSILSKEEIDHI---IMSKDAVSGTLR---LFWTLLSKQEE 77

Query: 154 HAQRC----------FLSGPWGTFESSVLLALAMY-------------------NRIHEK 184
             Q+           FL  P  T +    +   MY                   +R+   
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTL-LNILTGYKILRQL-----WLLEYSHKDLAL 238
             L+     LR  +   I G  G+GK+ + L++   YK+  ++     WL      +L  
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLKN 191

Query: 239 CR 240
           C 
Sbjct: 192 CN 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 67/242 (27%)

Query: 22  NNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTL-LNILTGYKT 80
           +   N N      N         L+     LR  +   I G  G+GK+ + L++   YK 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK- 175

Query: 81  SGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATA-LKLGKDLTKAAR 139
                                                V+  M+     L L    +    
Sbjct: 176 -------------------------------------VQCKMDFKIFWLNLKNCNSPETV 198

Query: 140 KDVVRTLFYRSDTNHAQRCFLSGP------WGTFESSVLLALAMYNR-------IHEKTI 186
            ++++ L Y+ D N   R   S            E   LL    Y         +     
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 187 LKSVSGR---L---RSGELTAIMGPSGAGKSTLLNILTGY------KILRQLWLLEYSHK 234
             + +     L   R  ++T  +  +     +L +            +L + + L+   +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-Y-LDCRPQ 316

Query: 235 DL 236
           DL
Sbjct: 317 DL 318

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH 92
           E  ILK ++ +++SG+  A++G SG GKST + ++   Y     +G ++I+G 
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQ 452

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 41   EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
               +L+ +S  ++ G+  A++G SG GKST++ +L   Y      GS+ ++G    + N+
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNV 1102

Query: 97   SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
               R     + Q+  L  + ++ E  N+A     G +    + +++VR
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAE--NIA----YGDNSRVVSYEEIVR 1143

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           E  ILK ++ +++SG+  A++G SG GKST + ++ 
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 183  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
               +L+ +S  ++ G+  A++G SG GKST++ +L
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKTSGTEGSITINGH---ERN 95
           N   +L  V+  ++ G L A++G +G+GKSTL+N I          G + ++        
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVK 411

Query: 96  LSQFRKLSCYIMQDNQL 112
           L   R     + Q+  L
Sbjct: 412 LKDLRGHISAVPQETVL 428

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLN 215
              +L  V+  ++ G L A++G +G+GKSTL+N
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN 387

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE-RNLS- 97
           +K +LK ++  ++ G+  A++GP+G+GK+T++N+L   Y      G I ++G + R +  
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKR 424

Query: 98  -QFRKLSCYIMQD 109
              R     ++QD
Sbjct: 425 SSLRSSIGIVLQD 437

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 13/36 (36%), Positives = 28/36 (77%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT 218
           +K +LK ++  ++ G+  A++GP+G+GK+T++N+L 
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--------HERNLSQFRKLSCYI 106
            +   ++GP+GAGKS  L ++ G       G + +NG          R +         +
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGF-------V 75

Query: 107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
            QD  L  +L+V    N+A  L   +++ +  R   VR
Sbjct: 76  PQDYALFPHLSVYR--NIAYGL---RNVERVERDRRVR 108

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
          E     +LK ++ ++  G+L A+ G +GAGK++LL ++ G +   +EG I  +G
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG-ELEPSEGKIKHSG 69

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +LK ++ ++  G+L A+ G +GAGK++LL ++ G
Sbjct: 20  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING 91
            ++   L  ++  +  G L A++G  G GKS+LL+ L   +    EG + I G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA-EMDKVEGHVAIKG 66

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            +   L  ++  +  G L A++G  G GKS+LL+ L  
Sbjct: 16  SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGH---ERNL 96
              +L+ ++  L  G++TA++GP+G+GKST+  +L   Y+   T G + ++G    + + 
Sbjct: 31  NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDH 88

Query: 97  SQFRK 101
                
Sbjct: 89  HYLHT 93

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
              +L+ ++  L  G++TA++GP+G+GKST+  +L
Sbjct: 31  NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 9/170 (5%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQ 98
              K  +  ++ +       A++GP+GAGKSTL+N+LTG +   T G +  + + R    
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG-ELLPTSGEVYTHENCR---- 737

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC 158
                 YI Q    H    +++  +     +      +       R +         +  
Sbjct: 738 ----IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIF 793

Query: 159 FLSGPWGTFESSVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGA 208
            + G                   +E + L   +  ++S     +M    A
Sbjct: 794 KIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            K  +  ++ +       A++GP+GAGKSTL+N+LTG
Sbjct: 685 SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 42/145 (28%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
             K +L     RL+      I GP+G GKSTL+  +   +  G           R     
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG----FPTQEECR----- 496

Query: 100 RKLSCYIMQDNQ-LHANLTVEEAMN---------VATAL-KLGKDLTKAARK-------- 140
              + Y+  D    H++ +V + +          +   L + G      A          
Sbjct: 497 ---TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGW 553

Query: 141 ----DVVRTLFYRSD-------TNH 154
                + R +   +D       TNH
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNH 578

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
               K +L     RL+      I GP+G GKSTL+  +   ++
Sbjct: 444 AYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 5  EYVNTNNTNNTNNTNNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPS 64
          E             NN   T+N + + + +N         LK ++ ++  G+L A+ G +
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPV-LKDINFKIERGQLLAVAGST 73

Query: 65 GAGKSTLLNILTGYKTSGTEGSITING 91
          GAGK++LL ++ G +   +EG I  +G
Sbjct: 74 GAGKTSLLMMIMG-ELEPSEGKIKHSG 99

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +LK ++ ++  G+L A+ G +GAGK++LL ++ G
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS 97
           +  +   L +V+  + +GE   I+GPSGAGK+T + I+ G     + G +  +      +
Sbjct: 14  KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASN 72

Query: 98  QFRKLSCY---I-M--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
               +      I M  Q   L+ NLT  E  N+A  L   K ++K   +  V 
Sbjct: 73  GKLIVPPEDRKIGMVFQTWALYPNLTAFE--NIAFPLTNMK-MSKEEIRKRVE 122

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             L +V+  + +GE   I+GPSGAGK+T + I+ G
Sbjct: 19  VALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 23/116 (19%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------ 92
             +   +  VS  ++ GE  A++GPSG GK+T L +L G     T G I  +        
Sbjct: 13  FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-TSGEIYFDDVLVNDIP 71

Query: 93  --ERNLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
              R +          M  Q+  L+ ++TV E  N+A  L+  + ++K   +  V 
Sbjct: 72  PKYREVG---------MVFQNYALYPHMTVFE--NIAFPLRARR-ISKDEVEKRVV 115

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING---HERN 95
                IL+++S  +  G+   ++G +G+GKSTLL+     +   TEG I I+G       
Sbjct: 31  EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGEIQIDGVSWDSIT 88

Query: 96  LSQFRKLSCYIMQDNQL 112
           L Q+RK    I Q   +
Sbjct: 89  LEQWRKAFGVIPQKVFI 105

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL 217
                 IL+++S  +  G+   ++G +G+GKSTLL+  
Sbjct: 30  TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 23/112 (20%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
           T L +++ +++ GE  A++GPSG+GKSTLL  + G     T G I  +          +R
Sbjct: 17  TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-TSGKIYFDEKDVTELPPKDR 75

Query: 95  NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           N+          +  Q+  L+ ++TV +  N+A  L+L K   +      VR
Sbjct: 76  NVG---------LVFQNWALYPHMTVYK--NIAFPLELRK-APREEIDKKVR 115

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 23/112 (20%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
           T +  ++  ++ GE   ++GPSG GK+T L ++ G +   TEG I             +R
Sbjct: 25  TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPKDR 83

Query: 95  NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
           N+S         M  Q   +  ++TV E  N+A  LK+ K   K      VR
Sbjct: 84  NIS---------MVFQSYAVWPHMTVYE--NIAFPLKIKK-FPKDEIDKRVR 123

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 17/112 (15%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF--- 99
           T ++ +S  ++ GE   ++GPSG GK+T L ++ G +   + G I I        +    
Sbjct: 17  TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEKGIF 75

Query: 100 -----RKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
                R ++   M  Q   L+ ++TV +  N+A  LKL K + +      VR
Sbjct: 76  VPPKDRDIA---MVFQSYALYPHMTVYD--NIAFPLKLRK-VPRQEIDQRVR 121

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTG 77
           +G ++   G SG GKS+LLN L G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTG 219
           +G ++   G SG GKS+LLN L G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
            G+++ + G SG GKS+LLN +     LR
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAINPGLKLR 196

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 54  SGELTAIMGPSGAGKSTLLNIL 75
            G+++ + G SG GKS+LLN +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAI 189

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 23/112 (20%)

Query: 43  TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH--------ER 94
            + K ++  +  GE    +GPSG GKSTLL ++ G +T  T G + I           ER
Sbjct: 17  VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPPAER 75

Query: 95  NLSQFRKLSCYIM--QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
            +          M  Q   L+ +L+V E  N++  LKL     K      V 
Sbjct: 76  GVG---------MVFQSYALYPHLSVAE--NMSFGLKLAG-AKKEVINQRVN 115

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKI 222
            G +  + GPSG GKS++L+ LTG ++
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGEEL 190

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 54  SGELTAIMGPSGAGKSTLLNILTG 77
            G +  + GPSG GKS++L+ LTG
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG 187

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 196 SGELTAIMGPSGAGKSTLLNILTGYKILR 224
             + T   G SG GKS+LLN ++    LR
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISPELGLR 200

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 54  SGELTAIMGPSGAGKSTLLNIL 75
             + T   G SG GKS+LLN +
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAI 193

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 39 PNEKTILKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTGYK 79
              + +      + S  L  A+ G +G+GKS+ +N L G  
Sbjct: 52 QLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 182 HEKTILKSVSGRLRSGELT-AIMGPSGAGKSTLLNILTGYKIL 223
              + +      + S  L  A+ G +G+GKS+ +N L G    
Sbjct: 53  LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE 95

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
           LK+VS ++  G   A+ G SG+GKSTL+N +L  YK L Q
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQ 677

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
           LK++   +  G    + G SG+GKS+L+   L  Y  L  
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL--YPALMN 637

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
           LK+VS ++  G   A+ G SG+GKSTL+N +L  YK L Q
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL--YKALAQ 375

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLLN-ILTGYKILRQ 225
           L ++  R   G +T++ G SG+GKSTL++  L     L  
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQAL--VDALAA 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.94
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.93
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.93
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.93
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.93
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.93
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.92
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.92
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.92
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.91
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.91
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.89
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.89
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.88
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.88
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.87
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.87
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.85
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.84
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.82
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.82
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.81
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.81
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.8
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.74
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.72
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.72
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.65
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.59
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.58
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.4
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.36
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.35
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.32
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.32
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.31
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.31
1g6h_A	257	High-affinity branched-chain amino acid transport	99.3
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.3
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.3
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.3
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.29
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.29
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.28
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.27
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.27
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.27
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.27
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.26
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.26
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.26
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.25
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.24
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.24
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.24
2og2_A	359	Putative signal recognition particle receptor; nuc	99.23
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.23
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.22
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.21
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.21
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.2
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.19
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.19
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.19
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.18
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.18
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.15
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.15
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.15
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.14
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.14
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.13
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.12
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.11
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.1
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.09
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.09
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.08
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.07
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.03
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.03
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.02
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.02
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.01
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.0
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.99
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.99
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.98
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.98
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.96
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.96
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.94
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.93
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.93
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.93
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.92
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.92
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.91
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.88
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.87
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.86
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.86
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.84
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.84
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.81
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.81
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.8
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.8
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.78
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.75
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.75
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.75
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.71
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.7
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.69
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.69
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.69
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.69
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.67
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.64
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.63
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.62
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.61
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.6
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.59
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.58
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.58
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.57
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.56
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.55
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.54
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.53
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.53
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.53
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.52
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.51
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.49
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.48
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.48
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.46
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.45
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.44
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.44
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.44
2og2_A	359	Putative signal recognition particle receptor; nuc	98.43
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.42
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.41
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.41
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.41
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.4
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.4
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.4
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.39
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.37
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.36
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.36
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.33
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.33
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.32
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.32
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.29
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.27
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.27
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.25
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.25
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.25
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.25
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.25
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.24
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.23
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.22
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.22
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.22
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.22
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.22
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.21
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.2
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.18
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.18
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.18
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.16
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.16
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.16
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.15
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.14
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.14
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.13
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.13
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.13
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.13
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.11
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.11
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.1
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.09
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.08
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.07
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.07
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.06
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.05
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.03
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.03
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.03
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.01
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.0
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.0
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.99
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.97
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.97
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.96
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.95
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.95
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.95
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.94
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.94
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.93
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.92
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.92
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.91
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.91
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.9
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.88
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.85
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.85
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.83
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.83
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.81
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.77
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.77
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.77
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.76
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.76
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.75
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.75
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.74
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.73
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.73
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.72
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.7
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.7
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.68
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.67
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.66
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.66
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.66
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.65
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.65
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.64
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.63
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.61
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.59
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.58
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.57
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.57
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.56
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.55
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.53
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.53
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.52
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.51
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.5
3ice_A	422	Transcription termination factor RHO; transcriptio	97.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.47
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.47
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.47
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.44
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.43
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.42
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.41
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.4
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.4
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.38
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.37
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.36
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.36
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.35
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.34
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.34
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.34
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.32
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.32
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.32
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.3
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.3
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.26
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.25
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.25
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.24
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.23
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.22
3ice_A	422	Transcription termination factor RHO; transcriptio	97.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.2
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.19
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.18
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.18
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.17
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.15
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.14
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.13
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.13
1via_A	175	Shikimate kinase; structural genomics, transferase	97.13
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.12
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.1
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.09
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.09
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.08
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.07
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.06
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.04
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.03
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.01
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.01
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.0
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.98
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.97
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.97
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.96
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.94
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.94
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.94
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.9
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.89
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.86
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.86
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.86
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.85
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.84
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.84
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.81
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.8
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.78
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.78
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.77
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.77
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.75
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.73
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.73
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.73
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.72
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.72
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.72
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.7
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.69
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.67
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.67
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.66
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.65
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.65
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.65
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.64
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.64
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.64
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.64
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.63
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.63
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.62
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.61
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.6
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.6
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.59
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.58
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.58
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.58
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.57
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.57
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.57
3bos_A	242	Putative DNA replication factor; P-loop containing	96.56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.56
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.56
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.56
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.56
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.55
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.55
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.54
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.54
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.53
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.53
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.52
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.52
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.52
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.52
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.52
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.51
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.51
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.51
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.51
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.5
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.48
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.48
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.46
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.46
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.46
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.45
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.45
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.45
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.43

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.94  E-value=3.5e-26  Score=207.08  Aligned_cols=144  Identities=22%  Similarity=0.251  Sum_probs=125.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|++..+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~   85 (381)
T 3rlf_A            7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   85 (381)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSCEEEECTTCC
T ss_pred             EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-CCCCCeEEEECCEECCCCCHHHCCEEEEecCCc
Confidence            5789999999999999999999999999999999999999999997 5688999999998764 2334567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+||.|++.+.....   ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        86 l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~  151 (381)
T 3rlf_A           86 LYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE  151 (381)
T ss_dssp             CCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence            999999999999865432   234555667788899999998888888888999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.94  E-value=1.5e-26  Score=208.14  Aligned_cols=145  Identities=22%  Similarity=0.292  Sum_probs=122.6

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-----CchhhhhhceEE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-----NLSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-----~~~~~~~~~g~v  106 (240)
                      -+|+++.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ ..|++|+|.++|.++     .....++.++||
T Consensus         7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v   85 (359)
T 3fvq_A            7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-EQPDSGEISLSGKTIFSKNTNLPVRERRLGYL   85 (359)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-SCCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred             EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-CCCCCcEEEECCEECcccccccchhhCCEEEE
Confidence            35789999999999999999999999999999999999999999997 668899999999875     123446789999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||++.+++.+||.|++.+....   ....+...++.++++++.+++.+...+.+...|++++|++.++++++..
T Consensus        86 fQ~~~l~p~ltV~eni~~~l~~---~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~  156 (359)
T 3fvq_A           86 VQEGVLFPHLTVYRNIAYGLGN---GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD  156 (359)
T ss_dssp             CTTCCCCTTSCHHHHHHTTSTT---SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             eCCCcCCCCCCHHHHHHHHHHH---cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999875321   1223344456778888888998888888888999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=1.2e-26  Score=219.06  Aligned_cols=92  Identities=21%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             cccCCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE---------EECCccCCc--
Q psy310           29 TNTNTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI---------TINGHERNL--   96 (240)
Q Consensus        29 ~~~~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V---------~v~g~~~~~--   96 (240)
                      ..-.+|+.+.|+++ .+++++| +|++||+++|+|||||||||||++|+|+ .+|++|++         .+.|.+...  
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl-~~p~~G~~~~~~~~~~~~~~g~~~~~~~   98 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ-LIPNLCGDNDSWDGVIRAFRGNELQNYF   98 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS-SCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCCccCcchhhhHHhhCCccHHHHH
Confidence            34457999999987 4999999 9999999999999999999999999997 55788884         234543211  


Q ss_pred             hh---hhhhceEEccccccccc---ccHHHHH
Q psy310           97 SQ---FRKLSCYIMQDNQLHAN---LTVEEAM  122 (240)
Q Consensus        97 ~~---~~~~~g~v~Q~~~~~~~---ltv~e~l  122 (240)
                      ..   .+..+++++|...+.+.   .++.+++
T Consensus        99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~  130 (538)
T 1yqt_A           99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL  130 (538)
T ss_dssp             HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHH
T ss_pred             HHHHHHhhhhhhhhhhhhhcchhhhccHHHHH
Confidence            00   11246788887544332   2566654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.93  E-value=1.1e-25  Score=191.71  Aligned_cols=147  Identities=25%  Similarity=0.293  Sum_probs=116.3

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh----hhh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ----FRK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~----~~~  101 (240)
                      +|+++.|+.    .++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   ..    .++
T Consensus         5 ~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   83 (235)
T 3tif_A            5 KNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-DKPTEGEVYIDNIKTNDLDDDELTKIRRD   83 (235)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence            466777753    4699999999999999999999999999999999997 56889999999987632   11    134


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++||+|++.+++.+|+.|++.+................+.+.++++.+++.+. ....+...|++++|++.+++++...
T Consensus        84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~  163 (235)
T 3tif_A           84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN  163 (235)
T ss_dssp             HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            699999999999999999999876443221223444455667778888887764 3566777899999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.93  E-value=1.4e-25  Score=189.71  Aligned_cols=144  Identities=27%  Similarity=0.264  Sum_probs=118.6

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch------hhh-hhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS------QFR-KLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~------~~~-~~~g~  105 (240)
                      +|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+....      ..+ +.++|
T Consensus         8 ~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   86 (224)
T 2pcj_A            8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGF   86 (224)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEE
T ss_pred             EeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCCCCHHHHHHHHhCcEEE
Confidence            5788889888999999999999999999999999999999999997 567899999999876321      122 67999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+|++.+++.+|+.|++.+.....   ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus        87 v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~  158 (224)
T 2pcj_A           87 VFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE  158 (224)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred             EecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999999999999998754332   123333455677788888887777777778899999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.93  E-value=1.2e-26  Score=221.80  Aligned_cols=90  Identities=20%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             CCCceecCCCc-eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE---------EECCccCCc--hh-
Q psy310           32 NTNNNCEPNEK-TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI---------TINGHERNL--SQ-   98 (240)
Q Consensus        32 ~~~~~~~~~~~-~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V---------~v~g~~~~~--~~-   98 (240)
                      .+|+.+.|+++ .+|+++| +|++||+++|+|||||||||||++|+|+ ..|++|++         .+.|.+...  .. 
T Consensus        94 ~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~  171 (607)
T 3bk7_A           94 DEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ-LIPNLCEDNDSWDNVIRAFRGNELQNYFERL  171 (607)
T ss_dssp             GGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS-SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred             cCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC-CCCCCCccccccchhhheeCCEehhhhhhhh
Confidence            46899999887 4999999 9999999999999999999999999997 55788885         234543211  00 


Q ss_pred             --hhhhceEEccccccccc---ccHHHHHH
Q psy310           99 --FRKLSCYIMQDNQLHAN---LTVEEAMN  123 (240)
Q Consensus        99 --~~~~~g~v~Q~~~~~~~---ltv~e~l~  123 (240)
                        .+..+++++|.....+.   .++.+++.
T Consensus       172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~  201 (607)
T 3bk7_A          172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLK  201 (607)
T ss_dssp             HHTSCCCEEECSCGGGGGGTCCSBHHHHHH
T ss_pred             hhhhcceEEeechhhhchhhccccHHHHhh
Confidence              12246788886543322   26776653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.93  E-value=2.1e-25  Score=200.55  Aligned_cols=145  Identities=24%  Similarity=0.319  Sum_probs=123.2

Q ss_pred             CCCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310           32 NTNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD  109 (240)
Q Consensus        32 ~~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~  109 (240)
                      -+|+.+.| +++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus        17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~   95 (355)
T 1z47_A           17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQN   95 (355)
T ss_dssp             EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred             EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEECCEECCcCChhhCcEEEEecC
Confidence            35788899 888899999999999999999999999999999999997 5688999999998763 23346789999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+|+.|++.+.....   ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        96 ~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~  163 (355)
T 1z47_A           96 YALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR  163 (355)
T ss_dssp             GCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            99999999999998864332   223444566778889999998888888888999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.93  E-value=1.5e-25  Score=201.84  Aligned_cols=145  Identities=25%  Similarity=0.277  Sum_probs=122.6

Q ss_pred             CCCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhh
Q psy310           32 NTNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRK  101 (240)
Q Consensus        32 ~~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~  101 (240)
                      -+|+++.|+.    ..+|++|||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|.++..      ...++
T Consensus        27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-~~p~~G~I~i~G~~i~~~~~~~~~~~r~  105 (366)
T 3tui_C           27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERPTEGSVLVDGQELTTLSESELTKARR  105 (366)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECSSCCHHHHHHHHT
T ss_pred             EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-CCCCceEEEECCEECCcCCHHHHHHHhC
Confidence            3577777753    5799999999999999999999999999999999997 66899999999987642      22457


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .++||||++.+++.+||.|++.+.....   ...+...++.+.++++.+++.+....++...|++++|++.+++++...
T Consensus       106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~  181 (366)
T 3tui_C          106 QIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN  181 (366)
T ss_dssp             TEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred             cEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            8999999999999999999998865432   234555667788899999998888888888999999999999999875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.93  E-value=2.3e-25  Score=192.60  Aligned_cols=146  Identities=25%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---------------
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---------------   96 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---------------   96 (240)
                      -+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...               
T Consensus         9 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~   87 (262)
T 1b0u_A            9 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQ   87 (262)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred             EeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEccccccccccccccChhh
Confidence            45788899989999999999999999999999999999999999997 56789999999987641               


Q ss_pred             -hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHH
Q psy310           97 -SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLA  174 (240)
Q Consensus        97 -~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  174 (240)
                       ...++.++||+|++.+++.+|+.|++.+......  ........+.+.++++.+++.+. ....+...|++++|++.++
T Consensus        88 ~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA  165 (262)
T 1b0u_A           88 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  165 (262)
T ss_dssp             HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence             1345679999999999999999999987531111  22333445667788888898877 7777778899999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       166 raL~~~  171 (262)
T 1b0u_A          166 RALAME  171 (262)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.93  E-value=2.8e-25  Score=192.31  Aligned_cols=147  Identities=22%  Similarity=0.283  Sum_probs=120.7

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceE
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~  105 (240)
                      .-+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..     ....++.++|
T Consensus        26 ~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~  104 (263)
T 2olj_A           26 DVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-EDFDEGEIIIDGINLKAKDTNLNKVREEVGM  104 (263)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred             EEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-CCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence            346788999988999999999999999999999999999999999997 5678999999998763     1234567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+|++.+++.+|+.|++.+......  ........+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus       105 v~Q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~  177 (263)
T 2olj_A          105 VFQRFNLFPHMTVLNNITLAPMKVR--KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME  177 (263)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EeCCCcCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence            9999999999999999987531111  223333455677888888888777777778899999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.93  E-value=2.8e-25  Score=191.54  Aligned_cols=144  Identities=21%  Similarity=0.268  Sum_probs=119.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc--hhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...  ...++.++|++|++
T Consensus        19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~   97 (256)
T 1vpl_A           19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA   97 (256)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred             EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEECCEECCccHHHHhhcEEEEcCCC
Confidence            5788899989999999999999999999999999999999999997 56789999999987532  23456799999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+|+.|++.+.....   ........+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        98 ~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~  164 (256)
T 1vpl_A           98 GAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  164 (256)
T ss_dssp             CCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999998754322   122333345567788888887777777778899999999999999875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.93  E-value=2.9e-25  Score=193.39  Aligned_cols=168  Identities=20%  Similarity=0.240  Sum_probs=131.9

Q ss_pred             CCCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----hhhhhhceE
Q psy310           32 NTNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----SQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----~~~~~~~g~  105 (240)
                      -+|+++.|++ .++|++|||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++..     ...++.++|
T Consensus        10 i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~   88 (275)
T 3gfo_A           10 VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-LKPSSGRILFDNKPIDYSRKGIMKLRESIGI   88 (275)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCCSHHHHHHHHHSEEE
T ss_pred             EEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-CCCCCeEEEECCEECCcccccHHHHhCcEEE
Confidence            4578899975 5699999999999999999999999999999999997 56789999999987631     235678999


Q ss_pred             Eccccc-ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccc
Q psy310          106 IMQDNQ-LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEK  184 (240)
Q Consensus       106 v~Q~~~-~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (240)
                      |||++. .+..+|+.|++.+.....   ........+.++++++.+++.+.....+...|++++|++.+++++...    
T Consensus        89 v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~----  161 (275)
T 3gfo_A           89 VFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME----  161 (275)
T ss_dssp             ECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC----
T ss_pred             EEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC----
Confidence            999973 344789999998764321   234455566788889999998888888888999999999999999875    


Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~  220 (240)
                                   ..+.|+.++-||     +-.++++|..+
T Consensus       162 -------------P~lLlLDEPts~LD~~~~~~i~~~l~~l  189 (275)
T 3gfo_A          162 -------------PKVLILDEPTAGLDPMGVSEIMKLLVEM  189 (275)
T ss_dssp             -------------CSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             -------------CCEEEEECccccCCHHHHHHHHHHHHHH
Confidence                         345666666663     34455555444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.93  E-value=9.2e-26  Score=223.94  Aligned_cols=82  Identities=24%  Similarity=0.380  Sum_probs=62.0

Q ss_pred             ccCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310           30 NTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        30 ~~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      -.+.|+.+.|+++.+|+++||+|++||+++|+|||||||||||++|+|       |+|  .|.+.. .  ...++|++|+
T Consensus       436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~-~--~~~~~~v~q~  503 (986)
T 2iw3_A          436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQ-E--ECRTVYVEHD  503 (986)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCT-T--TSCEEETTCC
T ss_pred             eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCccc-c--ceeEEEEccc
Confidence            344588899999999999999999999999999999999999999995       111  222211 0  1125788887


Q ss_pred             c-cccccccHHHHHH
Q psy310          110 N-QLHANLTVEEAMN  123 (240)
Q Consensus       110 ~-~~~~~ltv~e~l~  123 (240)
                      + .+...+++.+++.
T Consensus       504 ~~~~~~~ltv~e~l~  518 (986)
T 2iw3_A          504 IDGTHSDTSVLDFVF  518 (986)
T ss_dssp             CCCCCTTSBHHHHHH
T ss_pred             ccccccCCcHHHHHH
Confidence            4 5567788888765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.93  E-value=2.7e-25  Score=200.27  Aligned_cols=144  Identities=22%  Similarity=0.281  Sum_probs=122.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   85 (362)
T 2it1_A            7 ENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWA   85 (362)
T ss_dssp             EEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred             EeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-CCCCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence            5788999999999999999999999999999999999999999997 5688999999998763 2234577999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.....   ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  151 (362)
T 2it1_A           86 LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE  151 (362)
T ss_dssp             CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            999999999999864332   223444456778888989988887778888999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.93  E-value=2.7e-25  Score=201.11  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=122.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-------chhhhhhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-------LSQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-------~~~~~~~~g~  105 (240)
                      +|+.+.|+++++|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++.       ....++.++|
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~   85 (372)
T 1g29_1            7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM   85 (372)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred             EeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-CCCCccEEEECCEECccccccccCCHhHCCEEE
Confidence            5788899989999999999999999999999999999999999997 5688999999998753       2234567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |||++.+++.+|+.|++.+.....   ...+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        86 v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  157 (372)
T 1g29_1           86 VFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK  157 (372)
T ss_dssp             ECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999864332   223444456678888888888887788888999999999999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.92  E-value=3.3e-25  Score=200.41  Aligned_cols=146  Identities=21%  Similarity=0.248  Sum_probs=116.9

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQD  109 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~  109 (240)
                      .-+|+.+.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||+
T Consensus        13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~   91 (372)
T 1v43_A           13 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEPTEGRIYFGDRDVTYLPPKDRNISMVFQS   91 (372)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred             EEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence            345889999999999999999999999999999999999999999997 5688999999998763 22345779999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++.+|+.|++.+....   ....+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        92 ~~l~~~ltv~eni~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  159 (372)
T 1v43_A           92 YAVWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE  159 (372)
T ss_dssp             -----CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred             cccCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999999864211   1233444556778889999998888888888999999999999999875

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.92  E-value=2.1e-25  Score=200.84  Aligned_cols=144  Identities=22%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|+++.+|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~   85 (359)
T 2yyz_A            7 VNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYA   85 (359)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-CCCCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence            5788899999999999999999999999999999999999999997 5688999999998763 2234577999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+...  . ....+...++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        86 l~~~ltv~eni~~~~~--~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~  151 (359)
T 2yyz_A           86 LYPHMTVFENIAFPLR--A-RRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ  151 (359)
T ss_dssp             CCTTSCHHHHHHGGGS--S-SCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCCHHHHHHHHHH--h-cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999986421  1 1223333445677888889998888888888999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.92  E-value=1.9e-25  Score=200.82  Aligned_cols=144  Identities=23%  Similarity=0.269  Sum_probs=121.5

Q ss_pred             CCceecCCCce--eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhce
Q psy310           33 TNNNCEPNEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~~~~~--~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g  104 (240)
                      +|+.+.|++++  +|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++.      ....++.++
T Consensus         7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig   85 (353)
T 1oxx_K            7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-DVPSTGELYFDDRLVASNGKLIVPPEDRKIG   85 (353)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-SCCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred             EeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCEECcccccccCChhhCCEE
Confidence            47888888888  99999999999999999999999999999999997 5688999999998753      234467899


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||||++.+++.+|+.|++.+....   ........++.++++++.+++.+...+.+...|++++|++.+++++...
T Consensus        86 ~v~Q~~~l~~~ltv~eni~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           86 MVFQTWALYPNLTAFENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             EEETTSCCCTTSCHHHHHHGGGTT---SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCccCCCCCHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999874321   1234444566778889999998888888888999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.92  E-value=3.5e-25  Score=191.98  Aligned_cols=173  Identities=22%  Similarity=0.305  Sum_probs=132.6

Q ss_pred             cCCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           31 TNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        31 ~~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      .-+|+.+.++++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|++
T Consensus        13 ~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~   91 (266)
T 4g1u_C           13 EASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-LSPSHGECHLLGQNLNSWQPKALARTRAVMR   91 (266)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-SCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred             EEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence            346889999999999999999999999999999999999999999997 5678999999998763   234556799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceee
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTIL  187 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il  187 (240)
                      |++.+...+|++|++.+..... .    ....++.+.++++.+++.+.........|++++|++.+++++..-..     
T Consensus        92 q~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~-----  161 (266)
T 4g1u_C           92 QYSELAFPFSVSEVIQMGRAPY-G----GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ-----  161 (266)
T ss_dssp             SCCCCCSCCBHHHHHHGGGTTS-C----STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC-----
T ss_pred             cCCccCCCCCHHHHHHhhhhhc-C----cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc-----
Confidence            9999888899999998643211 1    11224456677888888777777777889999999999999986100     


Q ss_pred             ccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310          188 KSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGY  220 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~  220 (240)
                            -.....+.|+.++-||     +..++++|..+
T Consensus       162 ------~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l  193 (266)
T 4g1u_C          162 ------PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL  193 (266)
T ss_dssp             ------SSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             ------cCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence                  0001467777777775     34456665554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=4e-25  Score=190.54  Aligned_cols=148  Identities=20%  Similarity=0.185  Sum_probs=118.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIM  107 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~  107 (240)
                      -+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...    ...++.++||+
T Consensus        10 i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   88 (257)
T 1g6h_A           10 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-LKADEGRVYFENKDITNKEPAELYHYGIVRTF   88 (257)
T ss_dssp             EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred             EeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCEECCCCCHHHHHhCCEEEEc
Confidence            35788899999999999999999999999999999999999999997 56789999999987632    12346799999


Q ss_pred             ccccccccccHHHHHHHHHHH-hcCC---------CccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATAL-KLGK---------DLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~-~~~~---------~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      |++.+++.+|+.|++.+.... ....         .......++.+.++++.+++.+.........|++++|++.+++++
T Consensus        89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL  168 (257)
T 1g6h_A           89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL  168 (257)
T ss_dssp             CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence            999999999999999764211 0010         011223345677788888888777777788899999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       169 ~~~  171 (257)
T 1g6h_A          169 MTN  171 (257)
T ss_dssp             HTC
T ss_pred             HcC
Confidence            875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.92  E-value=8.9e-25  Score=183.76  Aligned_cols=161  Identities=16%  Similarity=0.248  Sum_probs=125.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.+++ ++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..  ..++.++||+|++.+
T Consensus        14 ~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~   89 (214)
T 1sgw_A           14 RDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIV   89 (214)
T ss_dssp             EEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGG--GGGGGEEEECSSCCC
T ss_pred             EEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECCEEhh--hhcCcEEEEeCCCcC
Confidence            578888988 999999999999999999999999999999999997 5678999999998764  356789999999999


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeecccee
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVSG  192 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vsl  192 (240)
                      ++.+|+.|++.+..... .....    .+.+.++++.+++.+. .......|++++|++.+++++...            
T Consensus        90 ~~~~tv~enl~~~~~~~-~~~~~----~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~------------  151 (214)
T 1sgw_A           90 PRKISVEDYLKAVASLY-GVKVN----KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVN------------  151 (214)
T ss_dssp             CTTSBHHHHHHHHHHHT-TCCCC----HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSC------------
T ss_pred             CCCCCHHHHHHHHHHhc-CCchH----HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhC------------
Confidence            88999999998754322 10111    2345566777777666 666677889999999999999875            


Q ss_pred             EEeCCcEEEEEcCCCC-----CHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGA-----GKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGs-----GKSTLlk~l~G~  220 (240)
                           ..+.|+.++-+     .+..++++|..+
T Consensus       152 -----p~lllLDEPts~LD~~~~~~l~~~l~~~  179 (214)
T 1sgw_A          152 -----AEIYVLDDPVVAIDEDSKHKVLKSILEI  179 (214)
T ss_dssp             -----CSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred             -----CCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence                 23444444444     466666666554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.92  E-value=1.5e-24  Score=194.57  Aligned_cols=140  Identities=21%  Similarity=0.284  Sum_probs=118.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|+++ +|+++||+|++||+++|+||||||||||||+|+|+ .+|++|+|.++|.++. ....++.++||||++.
T Consensus         5 ~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~   82 (348)
T 3d31_A            5 ESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS   82 (348)
T ss_dssp             EEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-SCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred             EEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-CCCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence            4788899888 99999999999999999999999999999999997 5688999999998763 2344678999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+.......   .+.   +.+.++++.+++.+...+.+...|++++|++.+++++...
T Consensus        83 l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~  145 (348)
T 3d31_A           83 LFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN  145 (348)
T ss_dssp             CCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred             cCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            99999999999886533211   111   4567788888888877777888999999999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.91  E-value=7.7e-25  Score=224.39  Aligned_cols=91  Identities=25%  Similarity=0.411  Sum_probs=78.9

Q ss_pred             CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      -+|+.+.|++   .++|+++||+|++||+++||||||||||||+++|.|++ +|++|+|.++|.++.   ...+++.++|
T Consensus       390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i~~  468 (1284)
T 3g5u_A          390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREIIGV  468 (1284)
T ss_dssp             EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhheEE
Confidence            4678888864   47999999999999999999999999999999999984 578999999998753   3556788999


Q ss_pred             EcccccccccccHHHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~  124 (240)
                      |+|++.++.. |++||+.+
T Consensus       469 v~Q~~~l~~~-ti~eNi~~  486 (1284)
T 3g5u_A          469 VSQEPVLFAT-TIAENIRY  486 (1284)
T ss_dssp             ECSSCCCCSS-CHHHHHHH
T ss_pred             EcCCCccCCc-cHHHHHhc
Confidence            9999998865 99999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=2.1e-24  Score=184.32  Aligned_cols=143  Identities=17%  Similarity=0.222  Sum_probs=113.7

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q  108 (240)
                      +|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+...   .. .++.++|++|
T Consensus        10 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   88 (240)
T 1ji0_A           10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-VRAQKGKIIFNGQDITNKPAHVINRMGIALVPE   88 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred             EeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEECCEECCCCCHHHHHhCCEEEEec
Confidence            5788889888999999999999999999999999999999999997 56789999999987632   11 2345999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC-cchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD-TNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|+.|++.+...  ..  .......+.++++++.++ +.+.........|++++|++.+++++...
T Consensus        89 ~~~l~~~ltv~enl~~~~~--~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~  157 (240)
T 1ji0_A           89 GRRIFPELTVYENLMMGAY--NR--KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGT--TC--CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCccCCCCcHHHHHHHhhh--cC--CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999999986421  11  111223445566777774 66666667778899999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.91  E-value=2.5e-24  Score=187.77  Aligned_cols=147  Identities=20%  Similarity=0.243  Sum_probs=114.8

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-----chhhhhhceEE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-----LSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-----~~~~~~~~g~v  106 (240)
                      -+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..     ....++.++||
T Consensus        24 ~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v  102 (279)
T 2ihy_A           24 LDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFV  102 (279)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTBCCC---CCHHHHHTTEEEE
T ss_pred             EEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCeEEEECCEEcccccCCHHHHcCcEEEE
Confidence            45788999989999999999999999999999999999999999997 5678999999998753     23346779999


Q ss_pred             ccccccc--ccccHHHHHHHHHHH--hcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLH--ANLTVEEAMNVATAL--KLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~--~~ltv~e~l~~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+.  ..+|++|++.+....  ....... ....+.+.++++.+++.+.........|++++|++.+++++...
T Consensus       103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~  179 (279)
T 2ihy_A          103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDID-DEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ  179 (279)
T ss_dssp             CHHHHTTSCTTSBHHHHHHTTC---------CC-HHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EcCcccccCCCCCHHHHHHhhhhhccccccCCc-HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence            9998643  346999999763211  0000111 22345567788888888777777778899999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.91  E-value=5.4e-24  Score=182.74  Aligned_cols=148  Identities=25%  Similarity=0.231  Sum_probs=110.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhh-hhhceEEc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQF-RKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~-~~~~g~v~  107 (240)
                      +|+.+.|+++++|+++||+|++||+++|+||||||||||+++|+|+. .+|++|+|.++|.+...   ... +..++|++
T Consensus         7 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~   86 (250)
T 2d2e_A            7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF   86 (250)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCC
T ss_pred             EeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEec
Confidence            57888898899999999999999999999999999999999999962 35689999999987632   111 33578999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCc-chhhhhccCC-CCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDT-NHAQRCFLSG-PWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+++.+++.+++.+................+.+.++++.+++ .+.....+.. .|++++|++.+++++...
T Consensus        87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~  161 (250)
T 2d2e_A           87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE  161 (250)
T ss_dssp             CCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred             cCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence            999999999999999875422111111222334556777888888 4666666666 899999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=3.6e-24  Score=185.46  Aligned_cols=143  Identities=20%  Similarity=0.160  Sum_probs=112.4

Q ss_pred             CCceecCC--C---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310           33 TNNNCEPN--E---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~~--~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      +|+.+.|+  +   +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+......++.++||+
T Consensus         6 ~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~i~~v~   84 (266)
T 2yz2_A            6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-IEPTSGDVLYDGERKKGYEIRRNIGIAF   84 (266)
T ss_dssp             EEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred             EEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCCcEEEECCEECchHHhhhhEEEEe
Confidence            46677776  4   6799999999999999999999999999999999997 5678999999998764324567799999


Q ss_pred             ccc-cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc--hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDN-QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN--HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~-~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++ .++..+|+.|++.+......    ......+.+.++++.+++.  +.....+...|++++|++.+++++...
T Consensus        85 q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~  156 (266)
T 2yz2_A           85 QYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE  156 (266)
T ss_dssp             SSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence            996 45667899999986421111    1111234466677888887  766777778899999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.90  E-value=1.6e-24  Score=209.23  Aligned_cols=33  Identities=45%  Similarity=0.608  Sum_probs=31.1

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      +|++|||+|++||++||+|+||||||||+++|+
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            699999999999999999999999999998764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.90  E-value=7.4e-24  Score=184.04  Aligned_cols=146  Identities=17%  Similarity=0.191  Sum_probs=107.8

Q ss_pred             cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhce
Q psy310           31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g  104 (240)
                      .-+|+.+.|++   +++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.++.   ....++.++
T Consensus        18 ~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~i~   96 (271)
T 2ixe_A           18 KFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-YQPTGGKVLLDGEPLVQYDHHYLHTQVA   96 (271)
T ss_dssp             EEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred             EEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECCEEcccCCHHHHhccEE
Confidence            34688888876   7899999999999999999999999999999999997 5678999999998753   233456799


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccH---HHHHHHHHHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTK---AARKDVVRTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      ||+|++.+++ .|+.|++.+...  .......   ......+..+++.+  ++...........|++++|++.+++++..
T Consensus        97 ~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           97 AVGQEPLLFG-RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             EECSSCCCCS-SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             EEecCCcccc-ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            9999998876 599999975311  1000000   01111223344444  34444445566788999999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       174 ~  174 (271)
T 2ixe_A          174 K  174 (271)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=5.9e-23  Score=177.99  Aligned_cols=149  Identities=19%  Similarity=0.192  Sum_probs=114.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEEEECCccCCc---hhh-hhhceEE
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSITINGHERNL---SQF-RKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V~v~g~~~~~---~~~-~~~~g~v  106 (240)
                      -+|+.+.|+++++|+++||+|++||+++|+|||||||||||++|+|+. .+|++|+|.++|.+...   ... +..++|+
T Consensus        23 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v  102 (267)
T 2zu0_C           23 IKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMA  102 (267)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred             EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence            467888998899999999999999999999999999999999999973 24679999999987531   112 2348999


Q ss_pred             cccccccccccHHHHHHHHHH-Hh--cC-CCccHHHHHHHHHHhhhcCCcc-hhhhhccC-CCCCchhhHHHHHHHHhcc
Q psy310          107 MQDNQLHANLTVEEAMNVATA-LK--LG-KDLTKAARKDVVRTLFYRSDTN-HAQRCFLS-GPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~-~~--~~-~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|++.+++.+++.+++.+... ..  .. .........+.++++++.+++. +.....+. ..|++++|++.+++++...
T Consensus       103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~  182 (267)
T 2zu0_C          103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE  182 (267)
T ss_dssp             CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred             ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999876431 11  11 1122333345677788888875 34455554 4899999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.89  E-value=4.4e-23  Score=177.48  Aligned_cols=137  Identities=19%  Similarity=0.228  Sum_probs=109.7

Q ss_pred             CCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           33 TNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.++ ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.+          ++.++||+|++.
T Consensus         8 ~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~----------~~~i~~v~q~~~   76 (253)
T 2nq2_C            8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-HRPIQGKIEV----------YQSIGFVPQFFS   76 (253)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-SCCSEEEEEE----------CSCEEEECSCCC
T ss_pred             eeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEE----------eccEEEEcCCCc
Confidence            56788888 88999999999999999999999999999999999997 5678999982          356899999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCC-ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKD-LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|+.|++.+......... .......+.+.++++.+++.+.........|++++|++.+++++...
T Consensus        77 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~  146 (253)
T 2nq2_C           77 SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE  146 (253)
T ss_dssp             CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            8889999999986421111100 01122345567788888888777777778899999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.89  E-value=2e-23  Score=178.31  Aligned_cols=139  Identities=21%  Similarity=0.263  Sum_probs=112.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|+.  +|+++||+|++ |+++|+|||||||||||++|+|+ .+|++|+|.++|.+.. ....++.++||+|++.
T Consensus         5 ~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   80 (240)
T 2onk_A            5 VRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-VKPDRGEVRLNGADITPLPPERRGIGFVPQDYA   80 (240)
T ss_dssp             EEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred             EEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence            467777865  59999999999 99999999999999999999997 5678999999998753 2234567999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|++|++.+...  . ...  ....+.++++++.+++.+.....+...|++++|++.+++++...
T Consensus        81 l~~~ltv~enl~~~~~--~-~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  144 (240)
T 2onk_A           81 LFPHLSVYRNIAYGLR--N-VER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ  144 (240)
T ss_dssp             CCTTSCHHHHHHTTCT--T-SCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCCcHHHHHHHHHH--H-cCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999999876321  1 111  11245677788888887777777778899999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.89  E-value=3.6e-23  Score=177.40  Aligned_cols=137  Identities=22%  Similarity=0.304  Sum_probs=103.2

Q ss_pred             CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+.+.|  +++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++||+
T Consensus        11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~   89 (247)
T 2ff7_A           11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-YIPENGQVLIDGHDLALADPNWLRRQVGVVL   89 (247)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred             EEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhcEEEEe
Confidence            5778888  467899999999999999999999999999999999997 5678999999998763   233567799999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhh-----------hccCCCCCchhhHHHHHHH
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQR-----------CFLSGPWGTFESSVLLALA  176 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  176 (240)
                      |++.+++ .|+.|++.+..     ......    .+.++++.+++.+...           ......|++++|++.++++
T Consensus        90 Q~~~l~~-~tv~enl~~~~-----~~~~~~----~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra  159 (247)
T 2ff7_A           90 QDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA  159 (247)
T ss_dssp             SSCCCTT-SBHHHHHTTTC-----TTCCHH----HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred             CCCcccc-ccHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence            9998875 69999987531     111221    2223333333333222           2235678899999999999


Q ss_pred             Hhcc
Q psy310          177 MYNR  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      ++..
T Consensus       160 L~~~  163 (247)
T 2ff7_A          160 LVNN  163 (247)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.88  E-value=7e-23  Score=175.88  Aligned_cols=129  Identities=25%  Similarity=0.300  Sum_probs=105.3

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccccccccccHH
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDNQLHANLTVE  119 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~~~~~~ltv~  119 (240)
                      ++|+++||+|++||+++|+|||||||||||++|+|+ .+|+ |+|.++|.+..   ....++.++|++|++.+++.+|++
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   91 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW   91 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence            689999999999999999999999999999999998 5567 99999998752   234566799999999988889999


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhccc
Q psy310          120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRI  181 (240)
Q Consensus       120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (240)
                      |++.+..   . ....    .+.+.++++.+++.+.........|++++|++.+++++....
T Consensus        92 e~l~~~~---~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p  145 (249)
T 2qi9_C           92 HYLTLHQ---H-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT  145 (249)
T ss_dssp             HHHHTTC---S-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhh---c-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            9987531   1 1111    344666778888877777777788999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-23  Score=198.34  Aligned_cols=56  Identities=27%  Similarity=0.428  Sum_probs=47.5

Q ss_pred             ccCCCceecCCCce-eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE
Q psy310           30 NTNTNNNCEPNEKT-ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI   87 (240)
Q Consensus        30 ~~~~~~~~~~~~~~-~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V   87 (240)
                      +-.+|+.++|+... .+++++ .+.+||++||+|||||||||||++|+|+ ..|++|+|
T Consensus        78 ~~~~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gl-l~P~~G~i  134 (608)
T 3j16_B           78 NLEAHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGK-QKPNLGRF  134 (608)
T ss_dssp             SSSTTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS-SCCCTTTT
T ss_pred             hhcCCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcC-CCCCCceE
Confidence            34578889998764 567666 6899999999999999999999999997 56788987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.88  E-value=2.1e-23  Score=196.89  Aligned_cols=38  Identities=37%  Similarity=0.611  Sum_probs=33.3

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      .|..++|+|++||++||+|+||||||||+++|+|+..|
T Consensus       283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35556777999999999999999999999999999554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.88  E-value=5.2e-23  Score=181.59  Aligned_cols=143  Identities=21%  Similarity=0.227  Sum_probs=103.2

Q ss_pred             cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .-+|+++.|+ ++++|+++||+|++||+++||||||||||||+++|+|+ ..|.+|+|.++|.++.   ...+++.++||
T Consensus        55 ~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v  133 (306)
T 3nh6_A           55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-YDISSGCIRIDGQDISQVTQASLRSHIGVV  133 (306)
T ss_dssp             EEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-SCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred             EEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-CCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence            3467888884 57899999999999999999999999999999999998 4578999999998763   34567889999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++ ..|++|++.+...     ........+.++.+     +..+  ++...........|++++|++.++++++.
T Consensus       134 ~Q~~~lf-~~Tv~eNi~~~~~-----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          134 PQDTVLF-NDTIADNIRYGRV-----TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             CSSCCCC-SEEHHHHHHTTST-----TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             ecCCccC-cccHHHHHHhhcc-----cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            9999887 4699999975321     11222222222111     1111  11111122234578899999999999987


Q ss_pred             c
Q psy310          180 R  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       208 ~  208 (306)
T 3nh6_A          208 A  208 (306)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.87  E-value=1e-22  Score=174.00  Aligned_cols=138  Identities=22%  Similarity=0.301  Sum_probs=102.2

Q ss_pred             CCceecC-CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEP-NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~-~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      +|+.+.| +++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|.+..   ....++.++||+|
T Consensus         5 ~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   83 (243)
T 1mv5_A            5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-YQPTAGEITIDGQPIDNISLENWRSQIGFVSQ   83 (243)
T ss_dssp             EEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-SCCSBSCEEETTEESTTTSCSCCTTTCCEECC
T ss_pred             EEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcC
Confidence            4677888 667899999999999999999999999999999999997 5678999999998753   2234677999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHHHH
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      ++.+++ .|+.|++.+..  .  .......    +.++++.+++.+..           .......|++++|++.+++++
T Consensus        84 ~~~l~~-~tv~enl~~~~--~--~~~~~~~----~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral  154 (243)
T 1mv5_A           84 DSAIMA-GTIRENLTYGL--E--GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF  154 (243)
T ss_dssp             SSCCCC-EEHHHHTTSCT--T--SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             CCcccc-ccHHHHHhhhc--c--CCCCHHH----HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence            998876 59999987531  1  1122222    22333333332221           123356788999999999999


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ...
T Consensus       155 ~~~  157 (243)
T 1mv5_A          155 LRN  157 (243)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.87  E-value=1.9e-22  Score=174.55  Aligned_cols=136  Identities=23%  Similarity=0.271  Sum_probs=108.6

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhce-EEc
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSC-YIM  107 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g-~v~  107 (240)
                      +|+.+.+++    +++|+++||+|+ ||+++|+|||||||||||++|+|+ . |++|+|.++|.+......++.++ |++
T Consensus         5 ~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-~-p~~G~I~~~g~~~~~~~~~~~i~~~v~   81 (263)
T 2pjz_A            5 KNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-L-PYSGNIFINGMEVRKIRNYIRYSTNLP   81 (263)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-S-CCEEEEEETTEEGGGCSCCTTEEECCG
T ss_pred             EEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-C-CCCcEEEECCEECcchHHhhheEEEeC
Confidence            456777776    789999999999 999999999999999999999998 5 78999999997653111256789 999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcc-hhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN-HAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.+  .+|+.|++.+.....   ...    .+.+.++++.+++. +.........|++++|++.+++++...
T Consensus        82 Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~  146 (263)
T 2pjz_A           82 EAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ  146 (263)
T ss_dssp             GGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             CCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            99887  889999998754322   111    23456677777877 666667777899999999999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.86  E-value=2.7e-22  Score=182.41  Aligned_cols=136  Identities=21%  Similarity=0.251  Sum_probs=107.5

Q ss_pred             cCCCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+.+.|  +++.+|+++||+|++||+++|+|||||||||||++|+|+ .+ ++|+|.++|.++.   ....++.++|
T Consensus        21 ~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-~~-~~G~I~i~G~~i~~~~~~~~rr~ig~   98 (390)
T 3gd7_A           21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LN-TEGEIQIDGVSWDSITLEQWRKAFGV   98 (390)
T ss_dssp             EEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-SE-EEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred             EEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-CC-CCeEEEECCEECCcCChHHHhCCEEE
Confidence            456888999  678899999999999999999999999999999999998 44 7899999998763   2345678999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCC-----------CCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSG-----------PWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  174 (240)
                      |||++.+++ +|+++++.+.      .....    +.+.++++.+++.+...+++..           .|++++|++.++
T Consensus        99 v~Q~~~lf~-~tv~enl~~~------~~~~~----~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA  167 (390)
T 3gd7_A           99 IPQKVFIFS-GTFRKNLDPN------AAHSD----QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA  167 (390)
T ss_dssp             ESCCCCCCS-EEHHHHHCTT------CCSCH----HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred             EcCCcccCc-cCHHHHhhhc------cccCH----HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence            999998886 6999988521      11122    2344566667776665555544           789999999999


Q ss_pred             HHHhc
Q psy310          175 LAMYN  179 (240)
Q Consensus       175 ~~~~~  179 (240)
                      ++++.
T Consensus       168 RAL~~  172 (390)
T 3gd7_A          168 RSVLS  172 (390)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98765

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.86  E-value=2.2e-21  Score=164.40  Aligned_cols=131  Identities=21%  Similarity=0.250  Sum_probs=93.5

Q ss_pred             CCCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccc
Q psy310           32 NTNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        32 ~~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      -+|+.+.++  ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|.+|+|.++|          .++|++|+
T Consensus         9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g----------~i~~v~q~   77 (229)
T 2pze_A            9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQF   77 (229)
T ss_dssp             EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEECS----------CEEEECSS
T ss_pred             EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CcCCccEEEECC----------EEEEEecC
Confidence            357778884  57899999999999999999999999999999999997 567899999987          38999999


Q ss_pred             ccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcCCcch--hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          110 NQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRSDTNH--AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       110 ~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +.+++. |++|++.+..    .  .......+..+.     .+..+....  .........|++++|++.+++++...
T Consensus        78 ~~~~~~-tv~enl~~~~----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~  148 (229)
T 2pze_A           78 SWIMPG-TIKENIIFGV----S--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD  148 (229)
T ss_dssp             CCCCSB-CHHHHHHTTS----C--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             CcccCC-CHHHHhhccC----C--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence            988775 9999987531    1  111111111111     111111000  01112346788999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.85  E-value=3e-21  Score=166.62  Aligned_cols=137  Identities=23%  Similarity=0.231  Sum_probs=100.6

Q ss_pred             CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      -+|+.+.|++   +++|+++||+|++||+++|+|||||||||||++|+|++. + +|+|.++|.+..   ....++.++|
T Consensus        20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~   97 (260)
T 2ghi_A           20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGI   97 (260)
T ss_dssp             EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred             EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEE
Confidence            3577888875   469999999999999999999999999999999999854 5 899999998753   2345677999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  174 (240)
                      |+|++.++. .|++|++.+..   .  ......    +.++++.+++.+..           .......|++++|++.++
T Consensus        98 v~Q~~~l~~-~tv~enl~~~~---~--~~~~~~----~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA  167 (260)
T 2ghi_A           98 VPQDTILFN-ETIKYNILYGK---L--DATDEE----VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA  167 (260)
T ss_dssp             ECSSCCCCS-EEHHHHHHTTC---T--TCCHHH----HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred             EcCCCcccc-cCHHHHHhccC---C--CCCHHH----HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence            999998875 69999987531   1  112221    22233333322211           123456788999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      ++++..
T Consensus       168 raL~~~  173 (260)
T 2ghi_A          168 RCLLKD  173 (260)
T ss_dssp             HHHHHC
T ss_pred             HHHHcC
Confidence            999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.84  E-value=8e-21  Score=161.79  Aligned_cols=130  Identities=23%  Similarity=0.292  Sum_probs=94.5

Q ss_pred             CCceecCC--CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           33 TNNNCEPN--EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~--~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      +|+.+.|+  ++++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|          .++||+|++
T Consensus         7 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~   75 (237)
T 2cbz_A            7 RNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-MDKVEGHVAIKG----------SVAYVPQQA   75 (237)
T ss_dssp             EEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-SEEEEEEEEECS----------CEEEECSSC
T ss_pred             EEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEECC----------EEEEEcCCC
Confidence            46778887  57899999999999999999999999999999999997 557899999988          289999998


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH--hhhcCCcch-----hhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT--LFYRSDTNH-----AQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+ ..+|+.|++.+..  ..    ......+..+.  +.+.++...     .........|++++|++.+++++...
T Consensus        76 ~~-~~~tv~enl~~~~--~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  145 (237)
T 2cbz_A           76 WI-QNDSLRENILFGC--QL----EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  145 (237)
T ss_dssp             CC-CSEEHHHHHHTTS--CC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             cC-CCcCHHHHhhCcc--cc----CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            65 5789999987531  11    11111111111  111111110     12234556788999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.82  E-value=3.3e-20  Score=176.58  Aligned_cols=140  Identities=19%  Similarity=0.242  Sum_probs=105.7

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+++.|++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|
T Consensus       343 ~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b60_A          343 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-YDIDEGHILMDGHDLREYTLASLRNQVAL  421 (582)
T ss_dssp             EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-TCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-cCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence            34678888873  7899999999999999999999999999999999998 5578999999998763   3446778999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  174 (240)
                      |+|++.+++ .|++|++.+...    ....++    .+.++++..++.+....           .....|++++|++.++
T Consensus       422 v~Q~~~l~~-~tv~eni~~~~~----~~~~~~----~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA  492 (582)
T 3b60_A          422 VSQNVHLFN-DTVANNIAYART----EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA  492 (582)
T ss_dssp             ECSSCCCCS-SBHHHHHHTTTT----SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred             EccCCcCCC-CCHHHHHhccCC----CCCCHH----HHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence            999999886 499999976310    112222    23334444444332222           2245778999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       493 ral~~~  498 (582)
T 3b60_A          493 RALLRD  498 (582)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.82  E-value=3.4e-20  Score=176.49  Aligned_cols=140  Identities=22%  Similarity=0.284  Sum_probs=105.0

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+++.|++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|
T Consensus       343 ~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b5x_A          343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-YDVDSGSICLDGHDVRDYKLTNLRRHFAL  421 (582)
T ss_pred             EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence            34678888874  6899999999999999999999999999999999998 4578999999998753   3456778999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHH
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLA  174 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  174 (240)
                      |+|++.+++ .|++|++.+...    ....++    .+.++++..++.+....           .....|++++|++.++
T Consensus       422 v~Q~~~l~~-~tv~eni~~~~~----~~~~~~----~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA  492 (582)
T 3b5x_A          422 VSQNVHLFN-DTIANNIAYAAE----GEYTRE----QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA  492 (582)
T ss_pred             EcCCCcccc-ccHHHHHhccCC----CCCCHH----HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence            999999886 599999976320    112222    23334444443332222           2245778999999999


Q ss_pred             HHHhcc
Q psy310          175 LAMYNR  180 (240)
Q Consensus       175 ~~~~~~  180 (240)
                      +++...
T Consensus       493 ral~~~  498 (582)
T 3b5x_A          493 RALLRD  498 (582)
T ss_pred             HHHHcC
Confidence            999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=7.9e-21  Score=181.07  Aligned_cols=143  Identities=19%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             cCCCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+++.|  +++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ...+++.++|
T Consensus       343 ~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-~~~~~G~i~i~g~~i~~~~~~~~r~~i~~  421 (587)
T 3qf4_A          343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-IDPERGRVEVDELDVRTVKLKDLRGHISA  421 (587)
T ss_dssp             EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-SCCSEEEEEESSSBGGGBCHHHHHHHEEE
T ss_pred             EEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-ccCCCcEEEECCEEcccCCHHHHHhheEE
Confidence            346778888  457899999999999999999999999999999999998 5578999999998763   3456788999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++. .|++||+.+..     .........+.++..     +..+  +............|++++|++.++++++
T Consensus       422 v~Q~~~lf~-~tv~eni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~  495 (587)
T 3qf4_A          422 VPQETVLFS-GTIKENLKWGR-----EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV  495 (587)
T ss_dssp             ECSSCCCCS-EEHHHHHTTTC-----SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred             ECCCCcCcC-ccHHHHHhccC-----CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence            999999885 49999987531     112222222222211     1111  1121222233457889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       496 ~~  497 (587)
T 3qf4_A          496 KK  497 (587)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.81  E-value=1.1e-20  Score=179.62  Aligned_cols=143  Identities=24%  Similarity=0.297  Sum_probs=102.5

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+++.+++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ....++.++|
T Consensus       341 ~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~~~~~~~~~~r~~i~~  419 (578)
T 4a82_A          341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YDVTSGQILIDGHNIKDFLTGSLRNQIGL  419 (578)
T ss_dssp             EEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-SCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-CCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence            34677888864  6799999999999999999999999999999999998 5578999999998763   3456778999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++.. |++||+.+..     .........+.++..     +..+  +............|++++|++.++++++
T Consensus       420 v~Q~~~l~~~-tv~eni~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~  493 (578)
T 4a82_A          420 VQQDNILFSD-TVKENILLGR-----PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL  493 (578)
T ss_dssp             ECSSCCCCSS-BHHHHHGGGC-----SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred             EeCCCccCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence            9999998865 9999987531     111222222222211     1110  1111111222357889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       494 ~~  495 (578)
T 4a82_A          494 NN  495 (578)
T ss_dssp             HC
T ss_pred             cC
Confidence            75

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.80  E-value=4.5e-20  Score=176.16  Aligned_cols=139  Identities=20%  Similarity=0.298  Sum_probs=102.9

Q ss_pred             cCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEE
Q psy310           31 TNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYI  106 (240)
Q Consensus        31 ~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v  106 (240)
                      .-+|+++.++ ++++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+..   ...+++.++||
T Consensus       356 ~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v  434 (598)
T 3qf4_B          356 EFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-YDVDRGQILVDGIDIRKIKRSSLRSSIGIV  434 (598)
T ss_dssp             EEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-SCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-cCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence            3467788886 46799999999999999999999999999999999998 5578999999998763   34567889999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhh-----------ccCCCCCchhhHHHHHH
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRC-----------FLSGPWGTFESSVLLAL  175 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  175 (240)
                      +|++.++. .|++||+.+..     .......    +.+.++..++.+....           .....|++++|++.+++
T Consensus       435 ~Q~~~lf~-~tv~eni~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr  504 (598)
T 3qf4_B          435 LQDTILFS-TTVKENLKYGN-----PGATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR  504 (598)
T ss_dssp             CTTCCCCS-SBHHHHHHSSS-----TTCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred             eCCCcccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence            99998875 59999987531     1111111    2223333333222111           12346889999999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      +++..
T Consensus       505 al~~~  509 (598)
T 3qf4_B          505 AFLAN  509 (598)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            99875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.79  E-value=2.1e-19  Score=157.42  Aligned_cols=123  Identities=21%  Similarity=0.294  Sum_probs=85.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.  .+++|+++||+|++||+++|+|||||||||||++|+|+ .+|++|+|.++|          .++|++|++.+
T Consensus        44 ~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g----------~i~~v~Q~~~l  110 (290)
T 2bbs_A           44 SNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-LEPSEGKIKHSG----------RISFCSQNSWI  110 (290)
T ss_dssp             --------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-SCEEEEEEECCS----------CEEEECSSCCC
T ss_pred             EEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCcEEEECC----------EEEEEeCCCcc
Confidence            455553  46799999999999999999999999999999999997 567899999987          37999999988


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-----------hhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-----------RCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++. |+.|++. .  ..    .......    .++...++.+..           .......|++++|++.++++++..
T Consensus       111 ~~~-tv~enl~-~--~~----~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~  177 (290)
T 2bbs_A          111 MPG-TIKENII-G--VS----YDEYRYR----SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD  177 (290)
T ss_dssp             CSS-BHHHHHH-T--TC----CCHHHHH----HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred             Ccc-cHHHHhh-C--cc----cchHHHH----HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence            774 9999986 2  11    1111111    111222221111           112346788999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.74  E-value=1.4e-18  Score=178.63  Aligned_cols=141  Identities=23%  Similarity=0.290  Sum_probs=102.8

Q ss_pred             cCCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310           31 TNTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g  104 (240)
                      .-+|++.+|.+   .++|+++||+|++||++|||||||||||||+++|.|++ .|.+|+|.++|.++   ....+|+.++
T Consensus      1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A         1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp             EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred             EEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            34678888854   46999999999999999999999999999999999985 47899999999876   3567889999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhh-------hhcc----CCCCCchhhHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQ-------RCFL----SGPWGTFESSVLL  173 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------~~~~----~~~~~~~~~~~~~  173 (240)
                      ||+|+|.++. .|++||+.+...   ....+.++..+.++    ..++.+.-       +..+    ...|++++|++.+
T Consensus      1157 ~V~Qdp~LF~-gTIreNI~~gld---~~~~sd~ei~~Al~----~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A         1157 IVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQVEEAAR----LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp             EECSSCCCCS-EEHHHHHSSSSC---TTTSCHHHHHHHHH----HTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred             EECCCCEeeC-ccHHHHHhccCC---CCCCCHHHHHHHHH----HhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence            9999998875 599999864310   11223333333333    22222111       1111    2356788999999


Q ss_pred             HHHHhcc
Q psy310          174 ALAMYNR  180 (240)
Q Consensus       174 ~~~~~~~  180 (240)
                      |+++.+.
T Consensus      1229 ARAllr~ 1235 (1321)
T 4f4c_A         1229 ARALVRN 1235 (1321)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHhC
Confidence            9998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.74  E-value=5.6e-18  Score=174.17  Aligned_cols=143  Identities=24%  Similarity=0.346  Sum_probs=102.6

Q ss_pred             cCCCceecCC---CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---Cchhhhhhce
Q psy310           31 TNTNNNCEPN---EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSC  104 (240)
Q Consensus        31 ~~~~~~~~~~---~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g  104 (240)
                      .-+|+...|.   ++++|+|+||+|++||+++||||+|||||||+++|.|++ .|.+|+|.++|.++   ....+++.++
T Consensus       417 ~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~i~  495 (1321)
T 4f4c_A          417 TVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKNVA  495 (1321)
T ss_dssp             EEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             EEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhccc
Confidence            3457777774   468999999999999999999999999999999999985 57899999999875   3466788999


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCC---cchhhhhcc----CCCCCchhhHHHHHHHH
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSD---TNHAQRCFL----SGPWGTFESSVLLALAM  177 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~  177 (240)
                      ||+|+|.++ ..|++||+.+..     +....+...+.++.......   +++.....+    ...+++++||+.+|+++
T Consensus       496 ~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl  569 (1321)
T 4f4c_A          496 VVSQEPALF-NCTIEENISLGK-----EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL  569 (1321)
T ss_dssp             EECSSCCCC-SEEHHHHHHTTC-----TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred             ccCCcceee-CCchhHHHhhhc-----ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence            999999886 469999997631     12233333333322110000   111111111    23678899999999998


Q ss_pred             hcc
Q psy310          178 YNR  180 (240)
Q Consensus       178 ~~~  180 (240)
                      +..
T Consensus       570 ~~~  572 (1321)
T 4f4c_A          570 VRN  572 (1321)
T ss_dssp             TTC
T ss_pred             ccC
Confidence            864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.72  E-value=2.3e-17  Score=157.64  Aligned_cols=130  Identities=22%  Similarity=0.197  Sum_probs=101.7

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~  111 (240)
                      -.|+.+.+++. .|+.++|+|.+||+++|+|||||||||||++|+|+ .+|++|+|.+          ...++|++|++.
T Consensus       360 ~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~I~~----------~~~i~~v~Q~~~  427 (607)
T 3bk7_A          360 YPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV-EEPTEGKVEW----------DLTVAYKPQYIK  427 (607)
T ss_dssp             ECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS-SCCSBSCCCC----------CCCEEEECSSCC
T ss_pred             EeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC-CCCCceEEEE----------eeEEEEEecCcc
Confidence            35677777664 68999999999999999999999999999999997 5678999875          235899999988


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ....+|+.+++........       ...+.+.++++.+++.+.....+...|++++|++.+++++...
T Consensus       428 ~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~  489 (607)
T 3bk7_A          428 AEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRD  489 (607)
T ss_dssp             CCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred             CCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            7778899887654211110       1123456677777777777777778899999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.72  E-value=3.3e-17  Score=154.63  Aligned_cols=129  Identities=22%  Similarity=0.204  Sum_probs=101.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .|+.+.+++ ..|+.++|+|++||++||+|||||||||||++|+|+ .+|.+|+|.+          ...++|++|++..
T Consensus       291 ~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-~~p~~G~i~~----------~~~i~~v~Q~~~~  358 (538)
T 1yqt_A          291 PRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV-EEPTEGKIEW----------DLTVAYKPQYIKA  358 (538)
T ss_dssp             CCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS-SCCSBCCCCC----------CCCEEEECSSCCC
T ss_pred             eeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCeEEEE----------CceEEEEecCCcC
Confidence            456666665 368999999999999999999999999999999997 5678999875          1358999999887


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ...+|+.+++.........       ..+.++++++.+++.+.....+...|++++|++.+++++...
T Consensus       359 ~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~  419 (538)
T 1yqt_A          359 DYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD  419 (538)
T ss_dssp             CCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred             CCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            7788998876542111111       123566788888887776777778899999999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.70  E-value=1.2e-17  Score=171.30  Aligned_cols=144  Identities=16%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             CCCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           32 NTNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      -+|+...|++   .++|+++||+|++||++||+||||||||||+++|.|+ .+|.+|+|.++|.++.   ...+++.++|
T Consensus      1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 1111 (1284)
T 3g5u_A         1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111 (1284)
T ss_dssp             EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SCCSEEEEESSSSCTTSSCHHHHTTSCEE
T ss_pred             EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cCCCCCEEEECCEEcccCCHHHHHhceEE
Confidence            3567777764   3699999999999999999999999999999999998 5578999999998763   3456788999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhh--hcC-Ccchhhhh----ccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF--YRS-DTNHAQRC----FLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~--~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++ ..|++||+.+...   ..........+.++...  +.. .+.+..+.    .....|++++|++.+++++.
T Consensus      1112 v~Q~~~l~-~~ti~eNi~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A         1112 VSQEPILF-DCSIAENIAYGDN---SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp             EESSCCCC-SSBHHHHHTCCCS---SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred             ECCCCccc-cccHHHHHhccCC---CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence            99999776 5699999875311   11122222222222211  000 01111111    12346788999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus      1188 ~~ 1189 (1284)
T 3g5u_A         1188 RQ 1189 (1284)
T ss_dssp             HC
T ss_pred             cC
Confidence            75

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.69  E-value=9.3e-17  Score=151.52  Aligned_cols=131  Identities=21%  Similarity=0.246  Sum_probs=102.0

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .|+.+.+++ ..|+.++|+|++||++||+||||||||||+++|+|+ .+|++|+|.+.+.         .++|++|+...
T Consensus       273 ~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~---------~i~~~~q~~~~  341 (538)
T 3ozx_A          273 TKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE-ITADEGSVTPEKQ---------ILSYKPQRIFP  341 (538)
T ss_dssp             CCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS-SCCSBCCEESSCC---------CEEEECSSCCC
T ss_pred             cceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEECCe---------eeEeechhccc
Confidence            455666665 457888999999999999999999999999999997 5678999987652         47899998776


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ....++.+++....    ......  ....++++++.+++.+.....+...|++++|++.+++++...
T Consensus       342 ~~~~tv~~~l~~~~----~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~  403 (538)
T 3ozx_A          342 NYDGTVQQYLENAS----KDALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE  403 (538)
T ss_dssp             CCSSBHHHHHHHHC----SSTTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred             ccCCCHHHHHHHhh----hhccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            66789999876521    111111  123456788888888777777888999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.65  E-value=5.7e-18  Score=159.24  Aligned_cols=77  Identities=16%  Similarity=0.061  Sum_probs=62.6

Q ss_pred             CceecCCCceeeeeeEE-EEeCCCEEEEECCCCchHHHHHHH--HhCCCCCCCccEEEECCccCCc--hhhhhhceEEcc
Q psy310           34 NNNCEPNEKTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNI--LTGYKTSGTEGSITINGHERNL--SQFRKLSCYIMQ  108 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~--L~G~~~~~~~G~V~v~g~~~~~--~~~~~~~g~v~Q  108 (240)
                      +++.-+++.++|++++| .|++||+++|+||||||||||+++  ++|+ .++.+|.|.+.|.+...  ...++.++|++|
T Consensus        17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q   95 (525)
T 1tf7_A           17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IEFDEPGVFVTFEETPQDIIKNARSFGWDLA   95 (525)
T ss_dssp             SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred             ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence            45556777889999999 999999999999999999999999  7897 44578999999987421  223456789998


Q ss_pred             ccc
Q psy310          109 DNQ  111 (240)
Q Consensus       109 ~~~  111 (240)
                      ++.
T Consensus        96 ~~~   98 (525)
T 1tf7_A           96 KLV   98 (525)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.59  E-value=2e-15  Score=150.18  Aligned_cols=59  Identities=32%  Similarity=0.420  Sum_probs=53.1

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      -.|+.+.|++  +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.+++
T Consensus       674 v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-l~P~sG~I~~~~  734 (986)
T 2iw3_A          674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-LLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-SCCSEEEEEECT
T ss_pred             EEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEEcC
Confidence            3577888865  6899999999999999999999999999999999997 567899999976

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.58  E-value=1.5e-17  Score=133.27  Aligned_cols=86  Identities=15%  Similarity=0.098  Sum_probs=70.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .++.+.++++.+++++||+|++|++++|+||||||||||+|+|+|++  |.+|+|.+.|.++... . ....+++|++.+
T Consensus        11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~~~-~-~~~~~~~q~~~l   86 (158)
T 1htw_A           11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLVEE-Y-NIAGKMIYHFDL   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCEEE-E-EETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeeeee-c-cCCCcceecccc
Confidence            45567777788999999999999999999999999999999999974  6889999998775311 1 111389999888


Q ss_pred             cccccHHHHHH
Q psy310          113 HANLTVEEAMN  123 (240)
Q Consensus       113 ~~~ltv~e~l~  123 (240)
                      + .+++.+++.
T Consensus        87 ~-~ltv~e~l~   96 (158)
T 1htw_A           87 Y-RLADPEELE   96 (158)
T ss_dssp             T-TCSCTTHHH
T ss_pred             c-cCCcHHHHH
Confidence            7 888877764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.55  E-value=9.4e-15  Score=139.57  Aligned_cols=129  Identities=18%  Similarity=0.121  Sum_probs=95.4

Q ss_pred             CceecCCC-ceeeeeeEEEEeCC-----CEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEc
Q psy310           34 NNNCEPNE-KTILKSVSGRLRSG-----ELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIM  107 (240)
Q Consensus        34 ~~~~~~~~-~~~L~~vsl~I~~G-----e~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~  107 (240)
                      ++.+.+.. ..++++++|+|.+|     |+++|+|||||||||||++|+|+ .+|++|+.      .    ....++|++
T Consensus       351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl-~~p~~G~~------~----~~~~i~~~~  419 (608)
T 3j16_B          351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA-LKPDEGQD------I----PKLNVSMKP  419 (608)
T ss_dssp             SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS-SCCSBCCC------C----CSCCEEEEC
T ss_pred             ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC-CCCCCCcC------c----cCCcEEEec
Confidence            34445544 45789999999999     88999999999999999999997 56788862      1    123579999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |+.......++.+++...  .. .....    ...++.+++.+++.+.....+...|++++|++.+++++...
T Consensus       420 q~~~~~~~~tv~e~~~~~--~~-~~~~~----~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~  485 (608)
T 3j16_B          420 QKIAPKFPGTVRQLFFKK--IR-GQFLN----PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIP  485 (608)
T ss_dssp             SSCCCCCCSBHHHHHHHH--CS-STTTS----HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred             ccccccCCccHHHHHHHH--hh-ccccc----HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            987766667888866421  11 11111    12345667777777777778888999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.40  E-value=3.2e-14  Score=119.08  Aligned_cols=69  Identities=19%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hhhhhhceEEccccccccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQFRKLSCYIMQDNQLHAN  115 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~~~~~~g~v~Q~~~~~~~  115 (240)
                      ..-|++|||+|++|++++|+||||||||||+++|+|++  |  |.|.+ |.+...    ...++.++|++|++.+++.
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~   82 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED   82 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence            34699999999999999999999999999999999974  3  88988 654321    1124568899998765543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.36  E-value=1.2e-13  Score=127.14  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=75.8

Q ss_pred             cccCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc---cCCc--------
Q psy310           29 TNTNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNL--------   96 (240)
Q Consensus        29 ~~~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~---~~~~--------   96 (240)
                      .-.-.++++.++ +..+|+++ |+|.+||+++|+|||||||||||++|+|+ ..++.|.|.+.|.   +...        
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~~~~~~~~  208 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDFIENILGP  208 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHHHHhhccc
Confidence            345567888887 67899999 99999999999999999999999999997 5678999999997   3311        


Q ss_pred             hhhhhhceEEccc-ccccccccHHHHHHHH
Q psy310           97 SQFRKLSCYIMQD-NQLHANLTVEEAMNVA  125 (240)
Q Consensus        97 ~~~~~~~g~v~Q~-~~~~~~ltv~e~l~~~  125 (240)
                      ..+++.++|++|+ ....+.+++.+++.+.
T Consensus       209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~  238 (438)
T 2dpy_A          209 DGRARSVVIAAPADVSPLLRMQGAAYATRI  238 (438)
T ss_dssp             HHHHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cccCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            2245678999994 5556677888776653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.35  E-value=1.9e-13  Score=115.96  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccccccc
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLT  117 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~lt  117 (240)
                      ..+++++|+++||++++|+++||+||||||||||+++|+|++     |.+.++       ..++.++|++|+. ++..++
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~   74 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLT   74 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccC
Confidence            456778999999999999999999999999999999999963     333332       2356789999995 666788


Q ss_pred             HHHHHHH
Q psy310          118 VEEAMNV  124 (240)
Q Consensus       118 v~e~l~~  124 (240)
                      +.++..+
T Consensus        75 ~~~~~~~   81 (245)
T 2jeo_A           75 AEQKAKA   81 (245)
T ss_dssp             HHHHHHH
T ss_pred             HhHhhhh
Confidence            8887754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.32  E-value=9.1e-13  Score=110.90  Aligned_cols=48  Identities=42%  Similarity=0.598  Sum_probs=42.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~   63 (224)
T 2pcj_A           14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL   63 (224)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            4456799999999999999999999999999999999999554  46644

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.32  E-value=1.1e-12  Score=113.31  Aligned_cols=49  Identities=45%  Similarity=0.752  Sum_probs=42.9

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|++||++||+|+||||||||+|+|+|+..|  +++++
T Consensus        20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~   70 (266)
T 4g1u_C           20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL   70 (266)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred             EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence            35567899999999999999999999999999999999999554  46654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.31  E-value=3.3e-13  Score=118.61  Aligned_cols=81  Identities=15%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh--hhhceEEccccc-ccc
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHA  114 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~--~~~~g~v~Q~~~-~~~  114 (240)
                      +++++|++++|++++|+||||||||||+++|+|++ .+.+|+|.+.|.+....       .+  +..++|++|++. +.+
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            45789999999999999999999999999999974 46789999999876421       11  246899999988 888


Q ss_pred             cccHHHHHHHHH
Q psy310          115 NLTVEEAMNVAT  126 (240)
Q Consensus       115 ~ltv~e~l~~~~  126 (240)
                      .+++.+++.++.
T Consensus       169 ~~~v~e~l~~~~  180 (302)
T 3b9q_A          169 ATVLSKAVKRGK  180 (302)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            889999887643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.31  E-value=1.4e-12  Score=110.86  Aligned_cols=48  Identities=21%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   65 (240)
T 1ji0_A           16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF   65 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            4456799999999999999999999999999999999999544  56654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.30  E-value=1.2e-12  Score=112.37  Aligned_cols=48  Identities=38%  Similarity=0.675  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~   66 (257)
T 1g6h_A           17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF   66 (257)
T ss_dssp             ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            4556799999999999999999999999999999999999554  46644

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.30  E-value=3e-12  Score=123.47  Aligned_cols=36  Identities=42%  Similarity=0.569  Sum_probs=32.7

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ...+|++|||+|++||+++|+||||||||||+++|.
T Consensus       334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            345799999999999999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.30  E-value=1.3e-12  Score=112.46  Aligned_cols=48  Identities=31%  Similarity=0.465  Sum_probs=42.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|++||++||+|+||||||||+|+|+|+..|  +++++
T Consensus        16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~   65 (262)
T 1b0u_A           16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV   65 (262)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            4556799999999999999999999999999999999999554  57755

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.30  E-value=6e-15  Score=136.69  Aligned_cols=69  Identities=17%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-E-EEECCccCCchhhhhhceEEccccccc---ccccHHHH
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-S-ITINGHERNLSQFRKLSCYIMQDNQLH---ANLTVEEA  121 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~-V~v~g~~~~~~~~~~~~g~v~Q~~~~~---~~ltv~e~  121 (240)
                      +++|+|++||+++|+||||||||||+|+|+|+ ..+++| + |.++|.      .++.++|++|+..++   ..+++.++
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl-~~p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~en  202 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY-ALKFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLP  202 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT-THHHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc-ccccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhh
Confidence            79999999999999999999999999999997 557899 8 999882      256789999987543   34566665


Q ss_pred             H
Q psy310          122 M  122 (240)
Q Consensus       122 l  122 (240)
                      +
T Consensus       203 i  203 (460)
T 2npi_A          203 T  203 (460)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.30  E-value=1.5e-12  Score=110.31  Aligned_cols=45  Identities=40%  Similarity=0.661  Sum_probs=40.4

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||++||+||||||||||+++|+|+..|  +++++
T Consensus        18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~   64 (235)
T 3tif_A           18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI   64 (235)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence            4699999999999999999999999999999999999554  46655

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.29  E-value=1.6e-12  Score=112.16  Aligned_cols=49  Identities=31%  Similarity=0.563  Sum_probs=43.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        33 ~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~   83 (263)
T 2olj_A           33 SFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII   83 (263)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence            34566799999999999999999999999999999999999554  57765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.29  E-value=1.8e-12  Score=112.65  Aligned_cols=49  Identities=41%  Similarity=0.541  Sum_probs=43.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        30 ~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~   80 (279)
T 2ihy_A           30 MKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL   80 (279)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence            35567899999999999999999999999999999999999554  57755

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.29  E-value=1.8e-12  Score=111.40  Aligned_cols=48  Identities=35%  Similarity=0.541  Sum_probs=42.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~   74 (256)
T 1vpl_A           25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV   74 (256)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            4566799999999999999999999999999999999999554  56654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.28  E-value=4.4e-13  Score=110.82  Aligned_cols=77  Identities=18%  Similarity=0.164  Sum_probs=44.5

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHH
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEE  120 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e  120 (240)
                      ..+++++  .+|++||+++|+||||||||||+++|+|+++ ...+.+.+.+.... ...++.++|+||++..++.+++.+
T Consensus         8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~   83 (207)
T 1znw_A            8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQG   83 (207)
T ss_dssp             -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTT
T ss_pred             CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcC
Confidence            3456777  6999999999999999999999999999743 32222222121111 122456899999987766555544


Q ss_pred             H
Q psy310          121 A  121 (240)
Q Consensus       121 ~  121 (240)
                      +
T Consensus        84 ~   84 (207)
T 1znw_A           84 E   84 (207)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.27  E-value=2.6e-14  Score=119.24  Aligned_cols=67  Identities=12%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             cCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           38 EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        38 ~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      .++.+.+|+++    ++||+++|+|||||||||||++|+|+  +|++|+|............++.++|++|++
T Consensus         9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A            9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSRIILTRPAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred             CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence            34556788885    89999999999999999999999996  577898842101111123456799999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.27  E-value=2.2e-12  Score=107.97  Aligned_cols=47  Identities=23%  Similarity=0.505  Sum_probs=41.1

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +++ .+|+++||+|.+||+++|+|+||||||||+++|+|+..|  +++++
T Consensus        20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~   68 (214)
T 1sgw_A           20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY   68 (214)
T ss_dssp             SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence            445 799999999999999999999999999999999999554  46644

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.27  E-value=2.6e-12  Score=108.41  Aligned_cols=41  Identities=32%  Similarity=0.554  Sum_probs=38.1

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++.+|+++||+|++||+++|+|+||||||||+++|+|+..|
T Consensus        20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (229)
T 2pze_A           20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP   60 (229)
T ss_dssp             SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            46799999999999999999999999999999999999554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.27  E-value=2.1e-12  Score=111.45  Aligned_cols=49  Identities=39%  Similarity=0.598  Sum_probs=42.3

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc----ccchhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK----ILRQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~----~~~~~~~  228 (240)
                      .++++.+|+++||+|++||+++|+|+||||||||+|+|+|+.    ..+++++
T Consensus        29 ~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~   81 (267)
T 2zu0_C           29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF   81 (267)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred             EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence            345678999999999999999999999999999999999982    2356655

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.27  E-value=3e-12  Score=111.12  Aligned_cols=45  Identities=33%  Similarity=0.548  Sum_probs=39.8

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ..+|+++||+|++||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~   67 (275)
T 3gfo_A           21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF   67 (275)
T ss_dssp             CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence            4599999999999999999999999999999999999544  45544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.27  E-value=3.1e-12  Score=109.20  Aligned_cols=46  Identities=33%  Similarity=0.581  Sum_probs=41.0

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++.+|+++||+|.+||++||+|+||||||||+++|+|+..|  +++++
T Consensus        21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i   68 (247)
T 2ff7_A           21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI   68 (247)
T ss_dssp             SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            46799999999999999999999999999999999999554  46654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.26  E-value=3.3e-12  Score=109.47  Aligned_cols=41  Identities=34%  Similarity=0.617  Sum_probs=38.4

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..|
T Consensus        17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p   57 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP   57 (253)
T ss_dssp             TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred             CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56799999999999999999999999999999999999554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.26  E-value=2.9e-12  Score=109.04  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=41.3

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +++.+|+++||+|.+||+++|+|+||||||||+++|+|+..|  +++++
T Consensus        13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~   61 (243)
T 1mv5_A           13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI   61 (243)
T ss_dssp             SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred             CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            346799999999999999999999999999999999999554  56654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.26  E-value=3.1e-12  Score=108.53  Aligned_cols=41  Identities=29%  Similarity=0.433  Sum_probs=38.2

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++.+|+++||+|.+||+++|+|+||||||||+++|+|+..|
T Consensus        17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (237)
T 2cbz_A           17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK   57 (237)
T ss_dssp             SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred             CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            36799999999999999999999999999999999999654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.25  E-value=4e-12  Score=108.68  Aligned_cols=48  Identities=48%  Similarity=0.641  Sum_probs=41.3

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC--cc--cchhhh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY--KI--LRQLWL  228 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~--~~--~~~~~~  228 (240)
                      ++++.+|+++||+|++||+++|+|+||||||||+|+|+|+  ..  .+++++
T Consensus        13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~   64 (250)
T 2d2e_A           13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL   64 (250)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred             ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence            4556799999999999999999999999999999999997  33  346644

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.25  E-value=1.2e-12  Score=117.69  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC-CchhhhhhceEEc-ccccc--cccccHHH
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER-NLSQFRKLSCYIM-QDNQL--HANLTVEE  120 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~-~~~~~~~~~g~v~-Q~~~~--~~~ltv~e  120 (240)
                      +++++|.|++|++++|+||||||||||+++|+|++ ++.+|.|.+.+... .....+..+++++ |++..  +...++++
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~  243 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAAT  243 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHH
Confidence            39999999999999999999999999999999984 56899999987532 2222456788999 77654  36778899


Q ss_pred             HHHHHH
Q psy310          121 AMNVAT  126 (240)
Q Consensus       121 ~l~~~~  126 (240)
                      +++.+.
T Consensus       244 ~i~~~l  249 (361)
T 2gza_A          244 LLRSCL  249 (361)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            888653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.24  E-value=4.1e-12  Score=109.90  Aligned_cols=45  Identities=31%  Similarity=0.525  Sum_probs=40.5

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|.+||+++|+|+||||||||+++|+|+..|  +++++
T Consensus        32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~   78 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL   78 (271)
T ss_dssp             SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            6799999999999999999999999999999999999654  46644

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.24  E-value=1.9e-13  Score=120.26  Aligned_cols=52  Identities=27%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI   89 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v   89 (240)
                      +|+.+.++ .++|+++||+|++|++++|+||||||||||+++|+|++    +|+|..
T Consensus       105 ~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~  156 (305)
T 2v9p_A          105 QNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLS  156 (305)
T ss_dssp             TTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEEC
T ss_pred             EEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEE
Confidence            56777776 67999999999999999999999999999999999984    788864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.24  E-value=4.5e-12  Score=113.80  Aligned_cols=49  Identities=35%  Similarity=0.592  Sum_probs=43.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        13 ~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i   63 (359)
T 3fvq_A           13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL   63 (359)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence            45667899999999999999999999999999999999999554  46644

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.23  E-value=1.6e-12  Score=116.75  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh--hhhceEEccccc-cccc
Q psy310           46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF--RKLSCYIMQDNQ-LHAN  115 (240)
Q Consensus        46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~--~~~~g~v~Q~~~-~~~~  115 (240)
                      .+++|++++|++++|+||||||||||+++|+|++ .+.+|+|.+.+.+....       .+  +..++|++|++. +.+.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            4688999999999999999999999999999974 46789999999876421       11  346899999987 7888


Q ss_pred             ccHHHHHHHHH
Q psy310          116 LTVEEAMNVAT  126 (240)
Q Consensus       116 ltv~e~l~~~~  126 (240)
                      .++.+++.++.
T Consensus       227 ~tv~e~l~~~~  237 (359)
T 2og2_A          227 TVLSKAVKRGK  237 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            88999887653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.23  E-value=5.6e-12  Score=108.73  Aligned_cols=45  Identities=36%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +.+|+++||+|++||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~   66 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY   66 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence            5799999999999999999999999999999999999554  45644

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.22  E-value=8.3e-14  Score=127.31  Aligned_cols=117  Identities=19%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             CceeeeeeEEEEeCCC--------------------EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhh
Q psy310           41 EKTILKSVSGRLRSGE--------------------LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR  100 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge--------------------~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~  100 (240)
                      .+.+|++++|+|++|+                    +++|+||||||||||+++|+|+ .++++|+|.++|.+..     
T Consensus        35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl-~~p~~GsI~~~g~~~t-----  108 (413)
T 1tq4_A           35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI-GNEEEGAAKTGVVEVT-----  108 (413)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC-CTTSTTSCCCCC---------
T ss_pred             CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC-CCccCceEEECCeecc-----
Confidence            3568999999999999                    9999999999999999999997 5678999999886542     


Q ss_pred             hhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCc--hhhHHHHHHHHh
Q psy310          101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGT--FESSVLLALAMY  178 (240)
Q Consensus       101 ~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  178 (240)
                       ..++++|++ .++.+++.|+..+.    ..        +..+.++++.+++.+......  .+.+  +++++.++.++.
T Consensus       109 -~~~~v~q~~-~~~~ltv~D~~g~~----~~--------~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~  172 (413)
T 1tq4_A          109 -MERHPYKHP-NIPNVVFWDLPGIG----ST--------NFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAIS  172 (413)
T ss_dssp             -CCCEEEECS-SCTTEEEEECCCGG----GS--------SCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHH
T ss_pred             -eeEEecccc-ccCCeeehHhhccc----ch--------HHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHH
Confidence             137888875 34556655543221    00        112333444444443322211  3333  677777777765


Q ss_pred             c
Q psy310          179 N  179 (240)
Q Consensus       179 ~  179 (240)
                      .
T Consensus       173 ~  173 (413)
T 1tq4_A          173 M  173 (413)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.21  E-value=7e-12  Score=113.35  Aligned_cols=49  Identities=33%  Similarity=0.634  Sum_probs=43.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .+++..+|+++||+|++||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        12 ~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i   62 (381)
T 3rlf_A           12 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI   62 (381)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence            45677899999999999999999999999999999999999554  46644

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.21  E-value=2.6e-12  Score=119.52  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------h--hhhhceEEccccccccc
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------Q--FRKLSCYIMQDNQLHAN  115 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~--~~~~~g~v~Q~~~~~~~  115 (240)
                      -+++||++.+|++++|+|+||||||||+++|+|++ .+..|+|.+.+.+....       .  .+..++|++|+..+.+.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            36799999999999999999999999999999974 46789999987665321       1  24568999999887788


Q ss_pred             ccHHHHHHHHH
Q psy310          116 LTVEEAMNVAT  126 (240)
Q Consensus       116 ltv~e~l~~~~  126 (240)
                      .++.+++.+..
T Consensus       362 ~tV~e~l~~a~  372 (503)
T 2yhs_A          362 SVIFDAIQAAK  372 (503)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88999888764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.20  E-value=9.7e-12  Score=111.71  Aligned_cols=49  Identities=31%  Similarity=0.534  Sum_probs=42.7

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|++||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   62 (359)
T 2yyz_A           12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF   62 (359)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence            34566799999999999999999999999999999999999554  56654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.20  E-value=9.6e-12  Score=106.38  Aligned_cols=44  Identities=41%  Similarity=0.653  Sum_probs=39.6

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-chhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-RQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-~~~~~  228 (240)
                      .+|+++||+|++||+++|+|+||||||||+|+|+|+..| +++++
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~   58 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF   58 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence            589999999999999999999999999999999999443 77754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.19  E-value=9.8e-12  Score=111.51  Aligned_cols=47  Identities=32%  Similarity=0.724  Sum_probs=41.4

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   74 (355)
T 1z47_A           26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI   74 (355)
T ss_dssp             TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence            456799999999999999999999999999999999999554  45644

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.19  E-value=1e-11  Score=111.70  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=40.4

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ..+|+++||+|.+||++||+|+||||||||+|+|+|+..|  +++++
T Consensus        41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i   87 (366)
T 3tui_C           41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV   87 (366)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence            4699999999999999999999999999999999999655  46654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.19  E-value=1.2e-11  Score=111.30  Aligned_cols=49  Identities=33%  Similarity=0.626  Sum_probs=42.6

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   62 (362)
T 2it1_A           12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF   62 (362)
T ss_dssp             ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence            34566799999999999999999999999999999999999554  46654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.19  E-value=1.2e-11  Score=111.53  Aligned_cols=49  Identities=31%  Similarity=0.596  Sum_probs=42.6

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   62 (372)
T 1g29_1           12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI   62 (372)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence            34566799999999999999999999999999999999999554  46654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.18  E-value=1.2e-11  Score=106.32  Aligned_cols=45  Identities=29%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc-chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL-RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~-~~~~~  228 (240)
                      +.+|+++||+|++||+++|+|+||||||||+++|+|+..+ +++++
T Consensus        33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i   78 (260)
T 2ghi_A           33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKI   78 (260)
T ss_dssp             SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred             CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence            4699999999999999999999999999999999998433 46644

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.18  E-value=1.3e-11  Score=111.46  Aligned_cols=49  Identities=27%  Similarity=0.581  Sum_probs=42.7

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        20 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   70 (372)
T 1v43_A           20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF   70 (372)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence            35566799999999999999999999999999999999999554  46654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.17  E-value=1.3e-11  Score=107.78  Aligned_cols=45  Identities=29%  Similarity=0.504  Sum_probs=40.1

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      .+.+|+++||+|.+||+++|+|+||||||||+|+|+|+..|  ++++
T Consensus        50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~   96 (290)
T 2bbs_A           50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK   96 (290)
T ss_dssp             CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEE
T ss_pred             CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            35799999999999999999999999999999999999654  4554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.16  E-value=1.1e-11  Score=109.09  Aligned_cols=45  Identities=36%  Similarity=0.525  Sum_probs=40.2

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      ++.+|+++||+|++||++||+|+||||||||+++|+|+..|  ++|+
T Consensus        66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~  112 (306)
T 3nh6_A           66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR  112 (306)
T ss_dssp             TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred             CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE
Confidence            46799999999999999999999999999999999999655  3553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.16  E-value=1.8e-11  Score=105.49  Aligned_cols=44  Identities=30%  Similarity=0.606  Sum_probs=39.1

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-ccchhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-ILRQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-~~~~~~~  228 (240)
                      +.+|+++||+|. ||+++|+|+||||||||+|+|+|+. ..+++++
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~   62 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFI   62 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEE
Confidence            679999999999 9999999999999999999999996 2246644

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.15  E-value=4e-12  Score=101.55  Aligned_cols=52  Identities=17%  Similarity=0.059  Sum_probs=42.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc-ccchhhhccCC
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-ILRQLWLLEYS  232 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~-~~~~~~~~~~~  232 (240)
                      ++++.+++++||+|++||+++|+|+||||||||+|+|+|+. ..++++.+.++
T Consensus        17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~   69 (158)
T 1htw_A           17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT   69 (158)
T ss_dssp             HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred             HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEe
Confidence            34567899999999999999999999999999999999974 33566554443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.15  E-value=1e-11  Score=111.28  Aligned_cols=48  Identities=33%  Similarity=0.654  Sum_probs=41.8

Q ss_pred             cccce--eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          181 IHEKT--ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       181 ~~~~~--il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ++++.  +|+++||+|.+||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        13 y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i   64 (353)
T 1oxx_K           13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF   64 (353)
T ss_dssp             EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence            44566  99999999999999999999999999999999999554  46644

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.15  E-value=1.4e-11  Score=110.25  Aligned_cols=48  Identities=31%  Similarity=0.638  Sum_probs=41.6

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .++++ +|+++||+|++||+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        10 ~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~   59 (348)
T 3d31_A           10 KWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL   59 (348)
T ss_dssp             ECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence            34456 99999999999999999999999999999999999554  46654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.15  E-value=2.3e-12  Score=111.48  Aligned_cols=67  Identities=22%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      .++||||||||||||+++|+|+ ..+.+|+|.+.|.+......++.++|++|++.+...+|+.+++.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~-~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~   70 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS-QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGF   70 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH-HC------------CCCCCSCCEEEESCC----CCEEEEECCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhh
Confidence            4799999999999999999997 567899999999876443445678999999888777777665543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.14  E-value=4.4e-13  Score=119.47  Aligned_cols=83  Identities=12%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhce
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSC  104 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g  104 (240)
                      .+++.+.++.+.+|++++|++.+|++++|+|+||||||||+++|+|+ ..+.+|+|.+.+.+...       ...+..++
T Consensus        32 ~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~  110 (337)
T 2qm8_A           32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL-LTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA  110 (337)
T ss_dssp             CSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH-HHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred             eCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh-hhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence            45667777777899999999999999999999999999999999997 45678999998876521       12356789


Q ss_pred             EEccccccccc
Q psy310          105 YIMQDNQLHAN  115 (240)
Q Consensus       105 ~v~Q~~~~~~~  115 (240)
                      +++|++.++..
T Consensus       111 ~v~q~~~~~~~  121 (337)
T 2qm8_A          111 RLAIDRNAFIR  121 (337)
T ss_dssp             TGGGCTTEEEE
T ss_pred             eeccCcccccc
Confidence            99999877653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.14  E-value=8.4e-12  Score=115.99  Aligned_cols=51  Identities=16%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER   94 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~   94 (240)
                      ..+|+++||+|++ |+++|+|||||||||||++|+|+ .+|.+|+|.++|.+.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-LIPDLTLLNFRNTTE   67 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH-HCCCTTTCCCCCTTS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-CCCCCCEEEECCEEc
Confidence            4579999999999 99999999999999999999997 567899999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.14  E-value=3.2e-11  Score=108.18  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEEC-CccCCchhhhhhceEEcccccccccccHHHHH
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITIN-GHERNLSQFRKLSCYIMQDNQLHANLTVEEAM  122 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~-g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l  122 (240)
                      ++++++. .+|++++|+||||||||||+++|+|. .. +..|.|.+. |.... ......+++++|+..+++.+++.+. 
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~-~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~-  281 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGL-QNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF-  281 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCC-SSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcc-ccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence            4455553 48999999999999999999999997 55 778999886 64432 1234567999999888888887773 


Q ss_pred             HHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          123 NVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                            .+ ..+........+.++++.+++.+...+.....+ +..+++.++.++
T Consensus       282 ------~l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          282 ------GL-WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             ------CC-CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             ------hh-cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence                  11 123444445556667777777666666666566 667777665543

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.13  E-value=2.1e-11  Score=107.12  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----hh---h--hhhceEEcccccccccccHHHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----SQ---F--RKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----~~---~--~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      +|++++|+||||||||||+++|+|++ .+.+|+|.+.|.+...    .+   +  +..++|++|++...+..++.+++..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            79999999999999999999999974 4679999999987632    11   1  3458999999888888888888775


Q ss_pred             HH
Q psy310          125 AT  126 (240)
Q Consensus       125 ~~  126 (240)
                      +.
T Consensus       180 ~~  181 (304)
T 1rj9_A          180 MK  181 (304)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.12  E-value=8.6e-12  Score=104.67  Aligned_cols=68  Identities=21%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      -..++|++++|+||||||||||+++|+|++++ +..|.|.+.+++... ..+..++|+||++..++.+++
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~   79 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMIS   79 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHh
Confidence            35689999999999999999999999997443 368888887765422 123568899998766554443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.11  E-value=5.8e-12  Score=110.65  Aligned_cols=91  Identities=13%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             CceecCCCceeeeeeEEEE-------------------eCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEE---C
Q psy310           34 NNNCEPNEKTILKSVSGRL-------------------RSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITI---N   90 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I-------------------~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v---~   90 (240)
                      |+.+.|  .++++++++.+                   .+|+++||+|+||||||||+++|+|++.. |.+|.|.+   +
T Consensus        42 ~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d  119 (308)
T 1sq5_A           42 EVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             HHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             hHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence            344444  36888999888                   89999999999999999999999996331 67899999   7


Q ss_pred             CccCCchhhhhhceEEcccccccccccHHHHHHHHHHH
Q psy310           91 GHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATAL  128 (240)
Q Consensus        91 g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~  128 (240)
                      |..... ..++.++++ |...+...+++.+++.+...+
T Consensus       120 ~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l  155 (308)
T 1sq5_A          120 GFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDL  155 (308)
T ss_dssp             GGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred             CccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence            765432 234557788 777777888998888765443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.10  E-value=1.4e-11  Score=110.23  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             ccCCCceecCC-CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           30 NTNTNNNCEPN-EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        30 ~~~~~~~~~~~-~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      -.-+++.+.++ +..+++++ |.|.+||+++|+||||||||||+++|+|+ ..++.|.|.+.|..
T Consensus        46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-~~~~~g~i~~~G~~  108 (347)
T 2obl_A           46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG-ASADIIVLALIGER  108 (347)
T ss_dssp             TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCC
T ss_pred             eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC-CCCCEEEEEEeccc
Confidence            44567777887 67899999 99999999999999999999999999997 55788999888854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.09  E-value=5.4e-11  Score=101.13  Aligned_cols=42  Identities=26%  Similarity=0.483  Sum_probs=37.6

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +|+++||+|++ |+++|+|+||||||||+|+|+|+..|  +++++
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~   57 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL   57 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            59999999999 99999999999999999999999554  46654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.09  E-value=5.5e-11  Score=107.92  Aligned_cols=47  Identities=26%  Similarity=0.409  Sum_probs=40.9

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc-cchhhh
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI-LRQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~-~~~~~~  228 (240)
                      +++.+|+++||+|++||+++|+||||||||||+|+|+|+.. .+++++
T Consensus        32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i   79 (390)
T 3gd7_A           32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI   79 (390)
T ss_dssp             SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEE
T ss_pred             CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEE
Confidence            45679999999999999999999999999999999999843 345644

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.08  E-value=2.3e-11  Score=99.29  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=44.1

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccH
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      |+++.+|++++|+||||||||||+++|+|++ +    .+.+.+.....   ...+..++|++|++..+..+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK   68 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh
Confidence            5778899999999999999999999999973 2    35555543321   1124467899998766555443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.08  E-value=1.3e-11  Score=109.61  Aligned_cols=77  Identities=16%  Similarity=0.354  Sum_probs=59.0

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccccccccccHHHH
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQLHANLTVEEA  121 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~~~~~ltv~e~  121 (240)
                      +++++++|.|++|++++|+||||||||||+++|+|+ .+|.+|.|.++|.+.. ....+..++++++     ...+.+..
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~-~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----gg~~~r~~  232 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF-IPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADC  232 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG-SCTTSCEEEEESSCCCCCSSCSSEEEEECB-----TTBCHHHH
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC-CcCCCcEEEECCeeccccccchhEEEEEeC-----CChhHHHH
Confidence            378999999999999999999999999999999998 4568999999886431 2223455667764     34556665


Q ss_pred             HHHH
Q psy310          122 MNVA  125 (240)
Q Consensus       122 l~~~  125 (240)
                      ++.+
T Consensus       233 la~a  236 (330)
T 2pt7_A          233 LKSC  236 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.07  E-value=3e-11  Score=100.86  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~~~  228 (240)
                      ...-|+++||+|.+|++++|+||||||||||+++|+|+. ++++++
T Consensus         9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~~   53 (218)
T 1z6g_A            9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFYF   53 (218)
T ss_dssp             -------------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEEE
T ss_pred             ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEEE
Confidence            345799999999999999999999999999999999986 466654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.03  E-value=1.4e-11  Score=112.79  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             eecCCCceeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccc
Q psy310           36 NCEPNEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH  113 (240)
Q Consensus        36 ~~~~~~~~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~  113 (240)
                      .+.|++.+ |+++||+|++|++  ++||||||||||||+++|+|+.   ..|......   .....++.++|++|++.++
T Consensus        22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~---l~g~~~~~~---~~~~~~~~i~~v~Q~~~l~   94 (427)
T 2qag_B           22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK---FEGEPATHT---QPGVQLQSNTYDLQESNVR   94 (427)
T ss_dssp             CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC---C-------C---CSSCEEEEEEEEEEC--CE
T ss_pred             EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc---ccCCcCCCC---CccceEeeEEEEeecCccc
Confidence            56777777 9999999999999  9999999999999999999972   123211110   0111234688999987765


Q ss_pred             ccccHHH
Q psy310          114 ANLTVEE  120 (240)
Q Consensus       114 ~~ltv~e  120 (240)
                      +.+++.+
T Consensus        95 ~~ltv~D  101 (427)
T 2qag_B           95 LKLTIVS  101 (427)
T ss_dssp             EEEEEEE
T ss_pred             cccchhh
Confidence            5555443

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.03  E-value=7.4e-11  Score=106.88  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=56.5

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-------------------------------------C
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-------------------------------------S   81 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-------------------------------------~   81 (240)
                      ..+..+|++++|++.+| +++|+|||||||||||++|.++..                                     .
T Consensus        45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~  123 (415)
T 4aby_A           45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSS  123 (415)
T ss_dssp             EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEET
T ss_pred             hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEec
Confidence            34456799999999999 999999999999999999977532                                     1


Q ss_pred             CCccEEEECCccCCch---hhh-hhceEEccccccc
Q psy310           82 GTEGSITINGHERNLS---QFR-KLSCYIMQDNQLH  113 (240)
Q Consensus        82 ~~~G~V~v~g~~~~~~---~~~-~~~g~v~Q~~~~~  113 (240)
                      +..|.+.++|.+....   .+. ..+.+++|++.+.
T Consensus       124 ~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~  159 (415)
T 4aby_A          124 AGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVS  159 (415)
T ss_dssp             TSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTT
T ss_pred             CCceEEEECCEECCHHHHHHHHhhceEEecCccccc
Confidence            3367899999876532   222 3378999986544

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.02  E-value=2.8e-11  Score=106.76  Aligned_cols=56  Identities=18%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHH
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMN  123 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~  123 (240)
                      +++|+++||+||||||||||+++|+|++. +..|.              ..+++|+|++.+++. ++.+++.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~  142 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRN  142 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence            78999999999999999999999999743 44442              347899999988776 8887764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.02  E-value=1e-10  Score=93.95  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ++||+|++||+++|+||||||||||++++.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence            589999999999999999999999999865

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.01  E-value=1.1e-10  Score=114.93  Aligned_cols=35  Identities=37%  Similarity=0.548  Sum_probs=32.3

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHH-HhC
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNI-LTG   77 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~-L~G   77 (240)
                      .+|++|||+|++||++||+|+||||||||+++ |+|
T Consensus       511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred             cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence            36999999999999999999999999999996 664

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.00  E-value=7.2e-11  Score=103.51  Aligned_cols=69  Identities=17%  Similarity=0.252  Sum_probs=47.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCch--hhh-hhceEEccccccc-----ccccHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNLS--QFR-KLSCYIMQDNQLH-----ANLTVE  119 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~~--~~~-~~~g~v~Q~~~~~-----~~ltv~  119 (240)
                      ++.+|++++|+||||||||||+++|+ + ..+..|+|.+   .|......  ..+ +.++|++|.|.+.     +.+++ 
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~-~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-G-EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-S-CCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-H-hhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence            34579999999999999999999999 7 5678999999   77654321  112 3589999998653     56777 


Q ss_pred             HHH
Q psy310          120 EAM  122 (240)
Q Consensus       120 e~l  122 (240)
                      +++
T Consensus       238 e~l  240 (302)
T 2yv5_A          238 REV  240 (302)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.00  E-value=9.4e-11  Score=94.73  Aligned_cols=69  Identities=16%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-hhhhhceEEcccccccccccHHHHHHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-QFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      .+.+|++++|+||||||||||+++|+|.   +..|.|.+++.+.... ..+...+|++|++.  ...++.+++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~   74 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD   74 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence            4789999999999999999999999996   4579999988653110 11233567777543  34556665543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.99  E-value=2.3e-09  Score=106.41  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=29.6

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHH
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLL   72 (240)
                      ....|++|||+|++|++++|+|+||||||||+
T Consensus       596 ~~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          596 RHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             CSTTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ccccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            34569999999999999999999999999997

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.99  E-value=8.4e-11  Score=104.41  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhc--eEEcccccccccccHHHHH
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLS--CYIMQDNQLHANLTVEEAM  122 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~--g~v~Q~~~~~~~ltv~e~l  122 (240)
                      .++|++++|+||||||||||+++|+|+ ..+..|+|.+.+.+...       ...++.+  .+++|...+.+.+++.+++
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~-l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l  204 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANW-LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI  204 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH-HHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence            368999999999999999999999997 45678999999887632       1123333  4899998888888999988


Q ss_pred             HHHH
Q psy310          123 NVAT  126 (240)
Q Consensus       123 ~~~~  126 (240)
                      ..+.
T Consensus       205 ~~~~  208 (328)
T 3e70_C          205 QHAK  208 (328)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.98  E-value=6.9e-11  Score=103.58  Aligned_cols=80  Identities=24%  Similarity=0.194  Sum_probs=30.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .|+.+.++.+.++++++|.|      +|||+||+|||||+++|.|....+.+| +.+.|.+.........+++++|.+..
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~   74 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV   74 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence            36778889999999999998      999999999999999999952446678 77766554222123457788886554


Q ss_pred             cccccHH
Q psy310          113 HANLTVE  119 (240)
Q Consensus       113 ~~~ltv~  119 (240)
                      ...++++
T Consensus        75 ~~~ltv~   81 (301)
T 2qnr_A           75 KLRLTVV   81 (301)
T ss_dssp             CEEEEEE
T ss_pred             ccCcchh
Confidence            4444443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.98  E-value=8e-10  Score=109.63  Aligned_cols=34  Identities=44%  Similarity=0.587  Sum_probs=31.7

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ..|++|||+|++||++||+|+||||||||+++|.
T Consensus       638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999999853

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.97  E-value=2.8e-10  Score=108.14  Aligned_cols=44  Identities=25%  Similarity=0.514  Sum_probs=39.6

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      +.+|+++||+|++||++||+|+||||||||+++|+|+..|  ++++
T Consensus       356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~  401 (582)
T 3b60_A          356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL  401 (582)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence            5799999999999999999999999999999999999654  4553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.97  E-value=5.8e-11  Score=113.46  Aligned_cols=75  Identities=23%  Similarity=0.279  Sum_probs=52.9

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhceEEcccccccccccHHHHH
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSCYIMQDNQLHANLTVEEAM  122 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g~v~Q~~~~~~~ltv~e~l  122 (240)
                      +|+++.   ++|||||||||||||++|+|++.|..+|.|.++|.++.      ....+..++|++|++.+++.+++.+++
T Consensus        42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i  118 (608)
T 3szr_A           42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI  118 (608)
T ss_dssp             SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred             cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence            366664   99999999999999999999844437999999997742      124567889999999999999999988


Q ss_pred             HHHH
Q psy310          123 NVAT  126 (240)
Q Consensus       123 ~~~~  126 (240)
                      ....
T Consensus       119 ~~~~  122 (608)
T 3szr_A          119 NKAQ  122 (608)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.96  E-value=3.3e-10  Score=107.60  Aligned_cols=44  Identities=34%  Similarity=0.499  Sum_probs=39.6

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      +.+|+++||+|++||++||+|+||||||||+++|+|+..|  ++++
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  401 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC  401 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            5799999999999999999999999999999999999654  4553

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.94  E-value=3.9e-11  Score=103.20  Aligned_cols=62  Identities=23%  Similarity=0.295  Sum_probs=49.0

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-ccEEEECCccCCchhhhhhceEEcc
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      ++|++++  +++|++++|+||||||||||+++|+|++ ++. +|+|.+.|.++... .+...++++|
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~~~-~~~~~~~v~q   77 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIEYV-FKHKKSIVNQ   77 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCCSC-CCCSSSEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcceee-cCCcceeeeH
Confidence            5889999  8999999999999999999999999974 455 89999988765321 1233456666

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.93  E-value=2.9e-10  Score=96.19  Aligned_cols=40  Identities=15%  Similarity=0.051  Sum_probs=25.3

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+++.+|+++||++.+|+++||+|+||||||||+++|+|+
T Consensus         9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A            9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3466799999999999999999999999999999999995

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.93  E-value=2.9e-10  Score=107.88  Aligned_cols=40  Identities=38%  Similarity=0.603  Sum_probs=37.6

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.+|+++||+|++||++||+||||||||||+++|+|+..|
T Consensus       354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            4699999999999999999999999999999999999655

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.93  E-value=2.3e-10  Score=95.70  Aligned_cols=38  Identities=29%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh-CCC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-GYK   79 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~-G~~   79 (240)
                      .+..+++||++++|++++|+||||||||||+++|+ |++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35678999999999999999999999999999999 974

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.92  E-value=4e-10  Score=107.38  Aligned_cols=40  Identities=33%  Similarity=0.707  Sum_probs=37.6

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.+|+++||+|++||++||+|+||||||||+++|+|+..|
T Consensus       368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            4699999999999999999999999999999999999655

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.91  E-value=4.6e-10  Score=106.78  Aligned_cols=45  Identities=29%  Similarity=0.489  Sum_probs=39.9

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLW  227 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~  227 (240)
                      ++.+|+++||+|++||++||+|+||||||||+++|+|+..|  +++.
T Consensus       355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  401 (587)
T 3qf4_A          355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE  401 (587)
T ss_dssp             SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred             CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence            35699999999999999999999999999999999999655  4553

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.88  E-value=4.9e-10  Score=98.03  Aligned_cols=60  Identities=22%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCch-h-h-hhhceEEccccc
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNLS-Q-F-RKLSCYIMQDNQ  111 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~~-~-~-~~~~g~v~Q~~~  111 (240)
                      ++.+|++++|+||||||||||+++|+|+ ..|..|+|.+   .|.+.... . . .+.++||+|.|.
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~-~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~  230 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPG-LKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG  230 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTT-CCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhccc-ccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence            4557999999999999999999999997 5678999998   77654211 1 1 135799999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.87  E-value=2.6e-10  Score=100.29  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL  226 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~  226 (240)
                      +.+|++++|+|++|++++|+|+||||||||+++|+|+. .++|
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I  154 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSV  154 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEE
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceE
Confidence            56999999999999999999999999999999999985 4544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.87  E-value=4.5e-10  Score=92.88  Aligned_cols=60  Identities=20%  Similarity=0.212  Sum_probs=41.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCC-C-----CccEEEECCccCCchhhhhhceEEccccccc
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTS-G-----TEGSITINGHERNLSQFRKLSCYIMQDNQLH  113 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~-----~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~  113 (240)
                      -|++||+++|+||||||||||+++|+|...+ +     ..+.+.+++.+...   ...+++++|...+.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~   86 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLD   86 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCC
Confidence            6899999999999999999999999994332 2     33477777654211   23355566655443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.86  E-value=3.3e-10  Score=99.69  Aligned_cols=71  Identities=18%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE---CCccCCc-hhhhh-hceEEcccccccc----cccHHH
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI---NGHERNL-SQFRK-LSCYIMQDNQLHA----NLTVEE  120 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v---~g~~~~~-~~~~~-~~g~v~Q~~~~~~----~ltv~e  120 (240)
                      +++.+|++++|+||||||||||+++|+|. ..+..|.|.+   .|..... ....+ ..+|++|.|.+..    .+++ +
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~-~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e  245 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE-LGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E  245 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccc-ccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence            45668999999999999999999999997 5567899988   6654321 11112 2799999987765    5777 6


Q ss_pred             HH
Q psy310          121 AM  122 (240)
Q Consensus       121 ~l  122 (240)
                      ++
T Consensus       246 ~l  247 (307)
T 1t9h_A          246 EL  247 (307)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.86  E-value=6.3e-10  Score=91.13  Aligned_cols=76  Identities=13%  Similarity=0.014  Sum_probs=49.9

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch--hhhhhceEEcccccccccccHHHH
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS--QFRKLSCYIMQDNQLHANLTVEEA  121 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~--~~~~~~g~v~Q~~~~~~~ltv~e~  121 (240)
                      ++-...+...+|++++|+|+||||||||+++|++.+     |.+.+++.+....  ..+...++++|++...+.+++.++
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   92 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE   92 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence            344444667899999999999999999999999963     7788888665321  122356899998776666666665


Q ss_pred             HHH
Q psy310          122 MNV  124 (240)
Q Consensus       122 l~~  124 (240)
                      +..
T Consensus        93 ~~~   95 (200)
T 4eun_A           93 WMD   95 (200)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.85  E-value=1.4e-10  Score=106.21  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hhhhhceEE
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QFRKLSCYI  106 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~~~~~g~v  106 (240)
                      ++.+.++...+|+++ +. .+|++++|+|||||||||||++|+|++ .+.+|.|.+.+.++...       +....+++.
T Consensus       148 ~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~  224 (418)
T 1p9r_A          148 SLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPIEFDIDGIGQTQVNPRVDMT  224 (418)
T ss_dssp             GSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSCCSCCSSSEEEECBGGGTBC
T ss_pred             HcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccchhccCCcceEEEccccCcC
Confidence            344455555677777 53 899999999999999999999999974 45689999887665321       123344554


Q ss_pred             c---------cccccc--cc----ccHHHHHHHH
Q psy310          107 M---------QDNQLH--AN----LTVEEAMNVA  125 (240)
Q Consensus       107 ~---------Q~~~~~--~~----ltv~e~l~~~  125 (240)
                      |         |+|.+.  ..    .++.+++.++
T Consensus       225 f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~  258 (418)
T 1p9r_A          225 FARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS  258 (418)
T ss_dssp             HHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH
Confidence            4         877653  22    4666766654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.84  E-value=2e-10  Score=94.14  Aligned_cols=53  Identities=19%  Similarity=0.321  Sum_probs=42.2

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccc
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDN  110 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~  110 (240)
                      |++++|+||||||||||+++|+|++ . .+| |.++|.... ....++.++|++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEECCEEETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEecchhHhhhceEEEEEEec
Confidence            7899999999999999999999974 4 678 888776542 233466789999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.81  E-value=3.5e-10  Score=94.10  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=32.2

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +.+.+|+++    .+||+++|+|+||||||||+++|+|+ .|
T Consensus        11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p   47 (208)
T 3b85_A           11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL   47 (208)
T ss_dssp             HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred             hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence            345677775    89999999999999999999999999 55

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.81  E-value=1.3e-09  Score=89.78  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=25.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ..++++  .+|.+||+++|+|+||||||||+++|+|+.
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            346677  689999999999999999999999999985

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.80  E-value=2e-09  Score=88.39  Aligned_cols=52  Identities=21%  Similarity=0.249  Sum_probs=39.2

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEccccccc--ccccHHHHHH
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH--ANLTVEEAMN  123 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~--~~ltv~e~l~  123 (240)
                      .++|+++||+||||||||||+++|+|++. +                   .++|++|++.++  ..+++.++..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~   56 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLR   56 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcC
Confidence            57899999999999999999999999632 2                   367888887665  4456666543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.80  E-value=1e-10  Score=98.67  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-----------hhhhhhceEEccc
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-----------SQFRKLSCYIMQD  109 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-----------~~~~~~~g~v~Q~  109 (240)
                      +|++.+ ++++|+|||||||||||++|+|+ ..|.+|.|.++|.+...           ...+..++|++|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~   91 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA-LIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD   91 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHH-HSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcc-cccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence            677777 89999999999999999999997 55789999998876511           1123567888874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.78  E-value=1.9e-10  Score=99.74  Aligned_cols=54  Identities=22%  Similarity=0.197  Sum_probs=43.7

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCccCC
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHERN   95 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~~~   95 (240)
                      +.++|+++++.|++|++++|+||||||||||+++|+|. ..+.+| .|.+.+.+..
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~~G~~v~~~~~e~~   75 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTAMGKKVGLAMLEES   75 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-HHHTSCCCEEEEESSSC
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHHcCCeEEEEeCcCC
Confidence            34579999999999999999999999999999999996 334556 6765544443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.75  E-value=1.5e-09  Score=101.69  Aligned_cols=51  Identities=16%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      ..+++++++.|++|+.++|+|||||||||||++|+|+ .++.+|.|.+.+..
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~-i~~~~giitied~~  297 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF-IPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG-SCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-CCCCCCEEEEcCcc
Confidence            3467889999999999999999999999999999998 46789999998754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.75  E-value=1.7e-09  Score=97.40  Aligned_cols=61  Identities=23%  Similarity=0.295  Sum_probs=47.5

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCC-ccEEEECCccCCchhhhhhceEEcc
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGT-EGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~-~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      +|++++  +.+|++++|+||||||||||+++|+|++. +. +|.|.+.+.+... ..+..+++++|
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~-~~~~~~~~v~Q  188 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQ  188 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCS-CCCCSSSEEEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhh-hhccCceEEEe
Confidence            455554  78999999999999999999999999744 44 7999776655432 24556788998

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.75  E-value=2.5e-09  Score=89.38  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh-CCc
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT-GYK  221 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~-G~~  221 (240)
                      ...+++||+|.+|++++|+|+||||||||+++|+ |+.
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999999 874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.71  E-value=1.9e-09  Score=88.82  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCccC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHER   94 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~~   94 (240)
                      .++|++++|+||||||||||+++|+|++.+  +..|.|.++|...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            478999999999999999999999997442  2467777766544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.70  E-value=1.9e-09  Score=98.49  Aligned_cols=41  Identities=34%  Similarity=0.569  Sum_probs=37.3

Q ss_pred             ceeeccceeEEeCCc--------------------EEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          184 KTILKSVSGRLRSGE--------------------LTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge--------------------~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      +.++++++|+|++||                    ++||+|+||||||||+++|+|+..+.
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~   96 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE   96 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence            468999999999999                    99999999999999999999985543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.69  E-value=5e-09  Score=97.35  Aligned_cols=44  Identities=23%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ..+|+++||+|++ |+++|+|+||||||||+++|+|+..+  +++++
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~   62 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF   62 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence            4579999999999 99999999999999999999998544  46655

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.69  E-value=3.7e-09  Score=85.38  Aligned_cols=63  Identities=24%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      |++++|+||||||||||+++|++    +.+|.+.+++.+...   ....++++|........++.+++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~   64 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA----QLDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITD   64 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH----HSSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc----ccCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHH
Confidence            67999999999999999999987    346888888754311   1234667765544444566665544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.69  E-value=3.4e-09  Score=96.99  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             cccceeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCCcc
Q psy310          181 IHEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +++.. ++++||+|++|++  +||+|+||||||||+++|+|+..
T Consensus        25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence            44455 9999999999999  99999999999999999999853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.69  E-value=1.1e-09  Score=92.61  Aligned_cols=69  Identities=16%  Similarity=0.269  Sum_probs=50.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHHh---CCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLLNILT---GYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~---G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      ++++++|+||||||||||+++|+   |+ ..++.|+|.+.+.+.. ......+.+++|+..+.+..++.+++..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-~~~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~   97 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-QHLSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMS   97 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC-CCEEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCC-eEecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            47999999999999999999999   97 5567788876653321 1233445566777666677777777664

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.69  E-value=4.9e-09  Score=85.36  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=27.9

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG   85 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G   85 (240)
                      ++|.+|++++|+||||||||||+++|++++ .+..|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~-~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP-STSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT-TCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh-CCCeE
Confidence            368899999999999999999999999974 23444

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.68  E-value=3.9e-09  Score=94.28  Aligned_cols=41  Identities=24%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      +..+++++ |+|.+|++++|+|+||||||||+++|+|+..+.
T Consensus        58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            56799999 999999999999999999999999999985543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.67  E-value=3.1e-09  Score=97.17  Aligned_cols=81  Identities=20%  Similarity=0.160  Sum_probs=48.3

Q ss_pred             CCCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCccCCchhhhhhceEEccc
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGHERNLSQFRKLSCYIMQD  109 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~~~~~~~~~~~~g~v~Q~  109 (240)
                      -.|+.+.++.+.++++++|.|      +|||+||||||||+++|+|... +..|  .+.+....   ......+++++|+
T Consensus        14 ~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-~~~~~~~~~~~~~~---t~~~~~i~~v~q~   83 (418)
T 2qag_C           14 FANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL-YSPEYPGPSHRIKK---TVQVEQSKVLIKE   83 (418)
T ss_dssp             -CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-CCCCCCSCC--------CCEEEEEECC---
T ss_pred             EEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-CCCCCCCcccCCcc---ceeeeeEEEEEec
Confidence            356778888899999999998      9999999999999999999733 2223  12111111   0112456778887


Q ss_pred             ccccccccHHHHH
Q psy310          110 NQLHANLTVEEAM  122 (240)
Q Consensus       110 ~~~~~~ltv~e~l  122 (240)
                      +.+...+++.+++
T Consensus        84 ~~~~~~Ltv~Dt~   96 (418)
T 2qag_C           84 GGVQLLLTIVDTP   96 (418)
T ss_dssp             ---CEEEEEEECC
T ss_pred             CCcccceeeeech
Confidence            6655555554443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.65  E-value=2.8e-09  Score=87.46  Aligned_cols=27  Identities=44%  Similarity=0.533  Sum_probs=22.9

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      ++|++++|+||||||||||+++|.|++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999964

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.64  E-value=3.1e-09  Score=90.43  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=45.8

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHh---CCCCCCCccEEE--------ECCccCC----chhhhhhceEEcccc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILT---GYKTSGTEGSIT--------INGHERN----LSQFRKLSCYIMQDN  110 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~---G~~~~~~~G~V~--------v~g~~~~----~~~~~~~~g~v~Q~~  110 (240)
                      .+|++++|+|||||||||++++|+   |+ ..++.|.+.        ..|.+..    ...++..+++++|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   96 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNW-RLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ   96 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTC-EEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCC-CcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence            789999999999999999999999   96 556789887        6776542    234567788888754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.64  E-value=6.7e-09  Score=83.26  Aligned_cols=33  Identities=33%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      ++++|++.+| +++|+||||||||||+++|.+++
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999 99999999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.63  E-value=3.1e-09  Score=86.16  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-ch--hhhhhceEEcccc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LS--QFRKLSCYIMQDN  110 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~--~~~~~~g~v~Q~~  110 (240)
                      +++|+||||||||||+++|+|++.      |.+.|.+.. ..  ..++.++|++|++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~   52 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT   52 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC
Confidence            689999999999999999999742      223332211 11  2356789999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.62  E-value=5.6e-09  Score=96.63  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +++|+|++||+++|+|+||||||||+|+|+|+..
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            7999999999999999999999999999999944

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.61  E-value=7e-09  Score=89.05  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=36.1

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc---chhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL---RQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~---~~~~~  228 (240)
                      .+|++++  +++|++++|+|+||||||||+++|+|+..+   ++++.
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~   59 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT   59 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence            4788888  999999999999999999999999998543   45544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.60  E-value=5.2e-09  Score=93.84  Aligned_cols=38  Identities=18%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            55999999999999999999999999999999999543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.59  E-value=1.9e-09  Score=92.18  Aligned_cols=48  Identities=23%  Similarity=0.341  Sum_probs=35.8

Q ss_pred             cCCCc-eecC-CCceeeeeeEEEEeC---CCEEEEECCCCchHHHHHHHHhCC
Q psy310           31 TNTNN-NCEP-NEKTILKSVSGRLRS---GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        31 ~~~~~-~~~~-~~~~~L~~vsl~I~~---Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .-+|+ .+.+ ++.++|+++||+|.+   |++++|+|++||||||++++|++.
T Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           19 ETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             -------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34566 7777 778899999999999   999999999999999999999984

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.59  E-value=1.5e-08  Score=88.84  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=33.9

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ..+..++|++++|++++|+|+||||||||++.|+|+..+
T Consensus        88 ~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           88 NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             -CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            334678999999999999999999999999999998433

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.58  E-value=9e-09  Score=94.69  Aligned_cols=40  Identities=23%  Similarity=0.391  Sum_probs=36.9

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +..+|+++ |+|.+|++++|+|+||||||||+++|+|+..+
T Consensus       144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            46799999 99999999999999999999999999998544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.58  E-value=4.4e-09  Score=93.25  Aligned_cols=38  Identities=16%  Similarity=0.366  Sum_probs=35.7

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            78999999999999999999999999999999998544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.58  E-value=7.2e-09  Score=83.59  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCCCCC---ccEEEECCccC-C-----chhhh-hhce----EEccccccc
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKTSGT---EGSITINGHER-N-----LSQFR-KLSC----YIMQDNQLH  113 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~~~~---~G~V~v~g~~~-~-----~~~~~-~~~g----~v~Q~~~~~  113 (240)
                      ++++|+|+||||||||+++|+|++. +.   .|.|.++|.+. .     ...++ +.++    ++.|++.++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~   73 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF   73 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence            5899999999999999999999754 44   79999998763 2     12344 3566    788877654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=2.5e-08  Score=81.41  Aligned_cols=38  Identities=18%  Similarity=0.044  Sum_probs=24.1

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ...+++++||++.+|++++|+|++||||||+++.|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999999999999999975

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.55  E-value=4e-09  Score=85.93  Aligned_cols=53  Identities=30%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCC----CCCccEEE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKT----SGTEGSIT   88 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~----~~~~G~V~   88 (240)
                      +|+.+.++ .+++++  |.+.+|++++|+|+||||||||++.|+|...    .+..|.+.
T Consensus         7 ~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~   63 (210)
T 1pui_A            7 QQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ   63 (210)
T ss_dssp             ----CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred             hhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence            45556665 356777  8899999999999999999999999999631    45556554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.54  E-value=1.6e-09  Score=88.64  Aligned_cols=59  Identities=22%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE--EECCccC
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI--TINGHER   94 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V--~v~g~~~   94 (240)
                      |+...++...+.+.+++..++|++++|+|+||||||||+++|++.+.  ..|.+  .+++.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~   64 (200)
T 3uie_A            4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV   64 (200)
T ss_dssp             ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred             CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence            45566677777788888889999999999999999999999999632  45776  7777543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.53  E-value=5.8e-09  Score=93.36  Aligned_cols=44  Identities=30%  Similarity=0.380  Sum_probs=38.7

Q ss_pred             eeeeEEEEeC--CCEEEEECCCCchHHHHHHHHhCCCCCCCc----cEEEE
Q psy310           45 LKSVSGRLRS--GELTAIMGPSGAGKSTLLNILTGYKTSGTE----GSITI   89 (240)
Q Consensus        45 L~~vsl~I~~--Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~----G~V~v   89 (240)
                      .+.|+++|.+  |++++|+||||||||||+++|+|++ .+.+    |++.+
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i  207 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFV  207 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHH
Confidence            4569999999  9999999999999999999999974 4667    77765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.53  E-value=1e-08  Score=91.78  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             eeccceeEEeC--CcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          186 ILKSVSGRLRS--GELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       186 il~~vsl~I~~--Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++..|+++|.+  |++++|+|+||||||||+++|+|+..+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46789999999  999999999999999999999998555

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.53  E-value=2.8e-08  Score=98.78  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++..++++++|++++|++++|+||||||||||||+|++
T Consensus       658 ~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          658 QDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            35678899999999999999999999999999999976

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.53  E-value=1.4e-08  Score=95.18  Aligned_cols=47  Identities=21%  Similarity=0.259  Sum_probs=39.8

Q ss_pred             ccceeecccee-EEeCCcEEEEEcCCCCCHHHHHHH--HhCCccc--chhhh
Q psy310          182 HEKTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNI--LTGYKIL--RQLWL  228 (240)
Q Consensus       182 ~~~~il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~--l~G~~~~--~~~~~  228 (240)
                      .+..+|++++| .|.+||+++|+|+||||||||+++  ++|+..+  +.+++
T Consensus        23 ~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v   74 (525)
T 1tf7_A           23 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV   74 (525)
T ss_dssp             CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence            35679999999 999999999999999999999999  6788543  35544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.52  E-value=2.8e-08  Score=89.04  Aligned_cols=73  Identities=22%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      .+.+|++++|+|||||||||||++|+|++.+...|.|...+.+... ......+++.|........+..+.++.
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~~~~La~  191 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGFSEALRS  191 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-hhhccccceeeeeeccccCCHHHHHHH
Confidence            5678999999999999999999999997443335676654443322 123344667776554445666665543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.52  E-value=1e-08  Score=91.05  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.3

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .+.++++++|++.+|++++|+|+||||||||+++|+|+..
T Consensus        41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3568999999999999999999999999999999998643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.51  E-value=3.1e-09  Score=91.79  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEccc
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQD  109 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~  109 (240)
                      ++...+|+++++.+++|  ++|+||||||||||+++|+|.. .+  +.+.+.|.++..   ....+.++++||.
T Consensus        30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES-GL--NFISVKGPELLNMYVGESERAVRQVFQR   98 (274)
T ss_dssp             HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-TC--EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-CC--CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence            34556789999999999  9999999999999999999973 32  788998876521   1223345555554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.50  E-value=5.2e-08  Score=95.67  Aligned_cols=38  Identities=26%  Similarity=0.278  Sum_probs=35.3

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++.++++++|+ ++|++++|+||||||||||||+|+|+
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            456789999999 99999999999999999999999995

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.49  E-value=3.5e-08  Score=79.46  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI   89 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v   89 (240)
                      .+|++++|+||||||||||+++|++.+++...|.|.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            3799999999999999999999999743224455543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.48  E-value=7.5e-09  Score=85.29  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             ceeeeeeEE-EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310           42 KTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN   95 (240)
Q Consensus        42 ~~~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~   95 (240)
                      .+.|+++.+ .|++|++++|+||||||||||++.|++... +..|.|.+.+.+..
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~   62 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEES   62 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSC
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccC
Confidence            456778876 899999999999999999999999998533 34567777665443

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.46  E-value=1.7e-08  Score=91.26  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=35.5

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +....+|++++|++.+| +++|+|+||||||||+++|.++
T Consensus        45 i~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             EEEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             hccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999 9999999999999999999776

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.45  E-value=7.4e-08  Score=95.93  Aligned_cols=36  Identities=25%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHH
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL   75 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L   75 (240)
                      +...++++++|++.+|++++|+||||||||||||+|
T Consensus       647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             CceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            445688899999999999999999999999999999

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.45  E-value=4.1e-08  Score=84.95  Aligned_cols=53  Identities=25%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--c-hh-hh-ccCChhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--R-QL-WL-LEYSHKD  235 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~-~~-~~-~~~~~~~  235 (240)
                      +..+|+++++.|++|++++|+|+||||||||++.|+|+..+  + .+ |+ .+.+++.
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~   78 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEE   78 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHH
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHH
Confidence            34589999999999999999999999999999999998443  2 34 33 5555543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.44  E-value=2.1e-08  Score=88.27  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=30.1

Q ss_pred             cceeE-EeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          189 SVSGR-LRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       189 ~vsl~-I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +++.. +.+|+++||+|+||||||||+++|+|+..+
T Consensus        81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            45543 899999999999999999999999998543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.44  E-value=8.5e-08  Score=79.00  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=26.7

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .|++||+++|+|+||||||||+++|+|+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999999999994

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.43  E-value=4.7e-08  Score=87.67  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      ..++|++++|++++|+|+||||||||++.|+|+..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            56899999999999999999999999999999843

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.42  E-value=7.1e-08  Score=96.97  Aligned_cols=43  Identities=21%  Similarity=0.194  Sum_probs=35.7

Q ss_pred             ceecC-CCceeeeeeEEEEeC-------CCEEEEECCCCchHHHHHHHHhCC
Q psy310           35 NNCEP-NEKTILKSVSGRLRS-------GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        35 ~~~~~-~~~~~L~~vsl~I~~-------Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++.+ ++..++++++|++.+       |++++|+||||||||||||+| |+
T Consensus       761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence            55555 667899999999987       999999999999999999999 86

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.42  E-value=5e-08  Score=90.73  Aligned_cols=42  Identities=17%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      -++++|++.+|++++|+|+||||||||++.|+|+..+  +++++
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l  326 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML  326 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence            4689999999999999999999999999999998433  35544

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.41  E-value=1.8e-09  Score=95.50  Aligned_cols=90  Identities=21%  Similarity=0.269  Sum_probs=61.4

Q ss_pred             CCCceecCCCceeeeeeEEEEeCC-------CEEEEECCCCchHHHHHHHHhCCCC---CCCccEEEECCccCCc--hh-
Q psy310           32 NTNNNCEPNEKTILKSVSGRLRSG-------ELTAIMGPSGAGKSTLLNILTGYKT---SGTEGSITINGHERNL--SQ-   98 (240)
Q Consensus        32 ~~~~~~~~~~~~~L~~vsl~I~~G-------e~vgLvG~NGSGKSTLLr~L~G~~~---~~~~G~V~v~g~~~~~--~~-   98 (240)
                      -++++.-++...+++++++.|.+|       +.++|+||||+|||||+++|++.+.   .+.+|.+...+.+...  .. 
T Consensus        21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~  100 (334)
T 1in4_A           21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL  100 (334)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC
T ss_pred             CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc
Confidence            346667778888999999999887       8999999999999999999999632   2234544443332210  01 


Q ss_pred             hhhhceEEcccccccccccHHHHHH
Q psy310           99 FRKLSCYIMQDNQLHANLTVEEAMN  123 (240)
Q Consensus        99 ~~~~~g~v~Q~~~~~~~ltv~e~l~  123 (240)
                      .+..+.++.|.+.+..  ++.+.+.
T Consensus       101 ~~~~v~~iDE~~~l~~--~~~e~L~  123 (334)
T 1in4_A          101 ERGDVLFIDEIHRLNK--AVEELLY  123 (334)
T ss_dssp             CTTCEEEEETGGGCCH--HHHHHHH
T ss_pred             cCCCEEEEcchhhcCH--HHHHHHH
Confidence            1345778888766543  5666553

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.41  E-value=5.9e-08  Score=77.16  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-hhh-hhceEEccccc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-QFR-KLSCYIMQDNQ  111 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-~~~-~~~g~v~Q~~~  111 (240)
                      .+|++++|+|+|||||||++++|++.+     |.+.+++.+.... ... ...++.+|+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~   61 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDD   61 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccc
Confidence            468999999999999999999999852     6677877654311 111 23566666543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.41  E-value=1.1e-07  Score=93.08  Aligned_cols=70  Identities=19%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHH
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVE  119 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~  119 (240)
                      ++..++++++|+   |++++|+||||||||||||+|+|+...+..|.+.      .  ..+..+++++|   ++..+++.
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p--a~~~~i~~v~~---i~~~~~~~  629 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P--AEEAHLPLFDG---IYTRIGAS  629 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S--SSEEEECCCSE---EEEECCC-
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e--hhccceeeHHH---hhccCCHH
Confidence            446788999999   9999999999999999999999963224456432      1  11234666665   45566666


Q ss_pred             HHHH
Q psy310          120 EAMN  123 (240)
Q Consensus       120 e~l~  123 (240)
                      +++.
T Consensus       630 d~l~  633 (765)
T 1ewq_A          630 DDLA  633 (765)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            6554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.40  E-value=3.1e-08  Score=86.71  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      .+|+++||+|+||||||||+++|+|+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            889999999999999999999999973

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.40  E-value=7.9e-08  Score=79.04  Aligned_cols=29  Identities=38%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .++|++++|+|+||||||||+++|+|+..
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999999999854

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.40  E-value=1.1e-07  Score=83.72  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|++.+| +++|+||||||||||+++|..+
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence            578888999 9999999999999999999853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.39  E-value=1.2e-07  Score=75.86  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             ceee--ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          184 KTIL--KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       184 ~~il--~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ...+  +++++.+.+| +++|+|+||||||||+++|+++
T Consensus        12 f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           12 FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            3466  7889999999 9999999999999999999885

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.38  E-value=6.7e-08  Score=85.35  Aligned_cols=79  Identities=13%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch-------hh-----hhhceEE-ccccc
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS-------QF-----RKLSCYI-MQDNQ  111 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~-------~~-----~~~~g~v-~Q~~~  111 (240)
                      +++++|++.+|++++|+|+||+||||++..|++.+ .+..|+|.+.+.|....       .+     +..+.++ +|...
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~  173 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN  173 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence            36789999999999999999999999999999964 34678888877665321       11     3346777 66544


Q ss_pred             ccccccHHHHHHH
Q psy310          112 LHANLTVEEAMNV  124 (240)
Q Consensus       112 ~~~~ltv~e~l~~  124 (240)
                      ..+..++.+++..
T Consensus       174 ~~p~~~~~~~l~~  186 (320)
T 1zu4_A          174 ADPASVVFDAIKK  186 (320)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            4444445555543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=1.6e-07  Score=76.57  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=23.1

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      ....++++||++.+|.+++|+|++||||||+.+.|++
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3458999999999999999999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.36  E-value=1.1e-07  Score=79.56  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        48 vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      -+...++|++++|+|+||||||||+++|+++     .|.|.+.+.+
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~   53 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEP   53 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence            3345579999999999999999999999995     5778887765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.36  E-value=4.2e-08  Score=87.56  Aligned_cols=68  Identities=25%  Similarity=0.317  Sum_probs=49.5

Q ss_pred             eeeeee-EEEEeCCCEEEEECCCCchHHHHHHHHhCCCC-CCCc----cE-EEECCccCCchhhhhhceEEccccccc
Q psy310           43 TILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYKT-SGTE----GS-ITINGHERNLSQFRKLSCYIMQDNQLH  113 (240)
Q Consensus        43 ~~L~~v-sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~-~~~~----G~-V~v~g~~~~~~~~~~~~g~v~Q~~~~~  113 (240)
                      +.|+.+ .+.|++|++++|+||||||||||++.|++... ++.+    |. |++++.+..   .+..+++++|...+.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~  192 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLD  192 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCC
Confidence            345555 68999999999999999999999999999742 3344    67 788876541   134466677765443

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.34  E-value=1.4e-07  Score=92.72  Aligned_cols=43  Identities=21%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL  226 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~  226 (240)
                      ++.++++++|+ .+|++++|+||||||||||+|+|+|+....|+
T Consensus       594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~  636 (800)
T 1wb9_A          594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYI  636 (800)
T ss_dssp             SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTT
T ss_pred             Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhc
Confidence            45689999999 99999999999999999999999997554443

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.33  E-value=3.8e-07  Score=75.73  Aligned_cols=43  Identities=19%  Similarity=0.333  Sum_probs=35.3

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhC--CCCC----CCccEEEECCcc
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTG--YKTS----GTEGSITINGHE   93 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G--~~~~----~~~G~V~v~g~~   93 (240)
                      -|++|++++|+||||||||||++.|++  ...+    ...|.+.+.+.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            488999999999999999999999999  3222    146788888765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.33  E-value=7.9e-08  Score=95.55  Aligned_cols=43  Identities=21%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL  226 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~  226 (240)
                      +.|+++++|++.+|++++|+||||||||||+|+|+++....|+
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~  702 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQI  702 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhc
Confidence            5688999999999999999999999999999999876554443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.32  E-value=2e-08  Score=88.37  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=32.8

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCC-------CCCccEEEECCccC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKT-------SGTEGSITINGHER   94 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~-------~~~~G~V~v~g~~~   94 (240)
                      ++++|+|+|||||||||++|.|...       .++.|+|.++|.++
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            5899999999999999999999731       46789998887654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.32  E-value=4e-07  Score=83.15  Aligned_cols=42  Identities=26%  Similarity=0.237  Sum_probs=36.7

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.+..---++++|+++.|++++|||+|||||||||++|++.
T Consensus       139 ~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             ccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            444544456899999999999999999999999999999996

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.29  E-value=6.8e-08  Score=82.46  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=34.7

Q ss_pred             ccceeeccceeEEeC---CcEEEEEcCCCCCHHHHHHHHhC
Q psy310          182 HEKTILKSVSGRLRS---GELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       182 ~~~~il~~vsl~I~~---Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      ++..+|++++|+|.+   |++++|+|++||||||++++|++
T Consensus        30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999   99999999999999999999987

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.27  E-value=3.8e-07  Score=75.03  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=25.7

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKT   80 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~   80 (240)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999999999743

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.27  E-value=1.5e-07  Score=92.64  Aligned_cols=35  Identities=37%  Similarity=0.523  Sum_probs=32.3

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHH-HhCC
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNI-LTGY  220 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~-l~G~  220 (240)
                      +|+++||+|++||++||+|+||||||||++. |+|+
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence            5899999999999999999999999999996 6654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.25  E-value=1.3e-07  Score=88.65  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ..++++++|.|++|+.++|+|+||||||||+++|+|+..+
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            4578899999999999999999999999999999998544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.25  E-value=1.8e-07  Score=80.59  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQL  226 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~  226 (240)
                      +..+.+|+++++.+.+|  ++|+||||||||||+++|+|...+..+
T Consensus        30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            34567999999999999  999999999999999999997554433

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.25  E-value=4.5e-07  Score=90.30  Aligned_cols=33  Identities=27%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l  217 (240)
                      .++++++|++.+|++++|+||||||||||+|+|
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            477899999999999999999999999999999

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.25  E-value=2.7e-07  Score=90.20  Aligned_cols=37  Identities=30%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      ++.++++++|+   |++++|+||||||||||+|+|+|+..
T Consensus       565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence            35688999998   99999999999999999999999754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.24  E-value=2e-07  Score=75.72  Aligned_cols=36  Identities=36%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ..++++  |.+.+|++++|+|+||||||||++.|+|..
T Consensus        15 ~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           15 APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356777  899999999999999999999999999986

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.23  E-value=2.9e-08  Score=85.17  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccc
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDN  110 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~  110 (240)
                      ..++...+++++++.+++|  ++|+||||||||||+++|++...   .|.|.+.+.+..   .......+.+++|..
T Consensus        57 ~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  128 (278)
T 1iy2_A           57 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETA  128 (278)
T ss_dssp             HHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444556788999999999  99999999999999999999632   678888775431   111233455666654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.22  E-value=3.4e-08  Score=83.40  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             ecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcccc
Q psy310           37 CEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQDN  110 (240)
Q Consensus        37 ~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q~~  110 (240)
                      ..++...+++++++++++|  ++|+||||+|||||+++|++...   .|.+.+.+.+..   .......+++++|..
T Consensus        33 ~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  104 (254)
T 1ixz_A           33 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETA  104 (254)
T ss_dssp             HHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444556789999999999  99999999999999999999632   678888775431   111223455666653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.22  E-value=1.9e-07  Score=76.41  Aligned_cols=41  Identities=24%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      ..+|++++|+|+||||||||+++|++.+ .+..|.|.+.+.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~-~~~~~~v~~~~~d   59 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTL-REQGISVCVFHMD   59 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHH-HHTTCCEEEEEGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCeEEEeccC
Confidence            5689999999999999999999999963 3456777776544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.22  E-value=4.7e-07  Score=74.37  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=32.6

Q ss_pred             ceeecccee-EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          184 KTILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       184 ~~il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ...|+++.+ .|.+|+.++|+|+||||||||++.|++.
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            345777776 7999999999999999999999999975

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.22  E-value=2.4e-07  Score=72.73  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCccC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGHER   94 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~~~   94 (240)
                      +|+.++|+||+|||||||+++|++.+. + +|  .+.+.+.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHh
Confidence            899999999999999999999999643 2 57  777777554

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.22  E-value=3.2e-07  Score=91.17  Aligned_cols=33  Identities=45%  Similarity=0.608  Sum_probs=31.1

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      .|+++||+|++||++||+|+||||||||+++|+
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            589999999999999999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.21  E-value=3.8e-07  Score=81.75  Aligned_cols=35  Identities=31%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ...+++++|++.+| +++|+|||||||||||++|.+
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           14 YRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             BTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            34578899999999 999999999999999999997

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.21  E-value=1.2e-07  Score=85.56  Aligned_cols=63  Identities=16%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccc
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN  110 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~  110 (240)
                      ..+|+++++.+++|++++|+||+|||||||+++|+|.    ..|.+.......  ......+++++|..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~----~~g~~~~~~~~~--~~~~~~lg~~~q~~  218 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL----CGGKALNVNLPL--DRLNFELGVAIDQF  218 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH----HCCEEECCSSCT--TTHHHHHGGGTTCS
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh----cCCcEEEEeccc--hhHHHHHHHhcchh
Confidence            3578999999999999999999999999999999985    256665521111  11222356666654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.21  E-value=2.3e-07  Score=74.16  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=28.1

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +|.+.+|+.++|+||||+|||||+++|++.+
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5677889999999999999999999999963

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.20  E-value=4.2e-08  Score=86.74  Aligned_cols=51  Identities=16%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             CCceeeeeeEEEEeCCC------EEEEECCCCchHHHHHHHHhCCCCC-CCccEEEEC
Q psy310           40 NEKTILKSVSGRLRSGE------LTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITIN   90 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge------~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~   90 (240)
                      ++...+++++..+.+++      ++||+||||||||||+++|.+++.. +..|.|.+-
T Consensus        71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i  128 (321)
T 3tqc_A           71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI  128 (321)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred             cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence            34445566666666666      8999999999999999999997432 345555443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.19  E-value=8.3e-07  Score=79.55  Aligned_cols=33  Identities=42%  Similarity=0.696  Sum_probs=30.0

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ..++++++++.+| +++|+|||||||||||.+|+
T Consensus        12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3467899999999 88999999999999999998

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.18  E-value=6.2e-07  Score=78.27  Aligned_cols=35  Identities=40%  Similarity=0.531  Sum_probs=22.4

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .++.+.++++++|+|      +|+|+||+|||||++.|+|.
T Consensus         7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A            7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             -----------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred             eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence            355678999999988      99999999999999999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.18  E-value=7.7e-07  Score=72.51  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+.++|++++|+|+||||||||+++|++.
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            355678999999999999999999999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.18  E-value=8.7e-07  Score=80.96  Aligned_cols=37  Identities=32%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .++.+.++++++|+|      +|+|+||||||||+++|+|+..
T Consensus        20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred             eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence            345678999999998      9999999999999999999865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.16  E-value=2.5e-07  Score=88.18  Aligned_cols=74  Identities=11%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q  108 (240)
                      ++.+.=+|...+++.+++.+.+|+.++|+||+|+|||||+++|++++.+...|.+.+.+....  .....+.++++
T Consensus        38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~--~~~p~i~~~p~  111 (604)
T 3k1j_A           38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED--ENMPRIKTVPA  111 (604)
T ss_dssp             SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC--TTSCEEEEEET
T ss_pred             cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc--ccCCcEEEEec
Confidence            344445677789999999999999999999999999999999999855443478888765442  12333455543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.16  E-value=5.8e-07  Score=90.38  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             cceeeccceeEEeC-------CcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          183 EKTILKSVSGRLRS-------GELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       183 ~~~il~~vsl~I~~-------Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ++.++++++|.+.+       |++++|+||||||||||+|.| |+.
T Consensus       768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence            45689999999987       999999999999999999999 873

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.16  E-value=5.3e-07  Score=76.01  Aligned_cols=39  Identities=23%  Similarity=0.557  Sum_probs=34.8

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +....+++++++.+.+|  ++|+|+||||||||+++|++..
T Consensus        35 ~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           35 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999  9999999999999999999863

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.15  E-value=3.8e-07  Score=82.28  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=34.9

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+++++++.|.+|+.++|+|+||||||||+++|+|.
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4689999999999999999999999999999999985

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.14  E-value=8.8e-07  Score=72.93  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKT   80 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~   80 (240)
                      +..-+|++++|+||||||||||++.|.+.++
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445899999999999999999999998643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.14  E-value=1.3e-06  Score=70.47  Aligned_cols=38  Identities=32%  Similarity=0.485  Sum_probs=30.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCC----C------CccEEEECCccC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTS----G------TEGSITINGHER   94 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~----~------~~G~V~v~g~~~   94 (240)
                      +++|+|+||||||||++.|+|...+    +      ..|.|.++|.+.
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            6899999999999999999996322    1      368888888643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.14  E-value=1.3e-06  Score=73.43  Aligned_cols=29  Identities=31%  Similarity=0.517  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHh---CCcccc
Q psy310          196 SGELTAIMGPSGAGKSTLLNILT---GYKILR  224 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~---G~~~~~  224 (240)
                      ++++++|+|+||||||||+++|+   |+..+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            47899999999999999999999   986554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.13  E-value=7.4e-07  Score=79.85  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +...+++++|++.+| +++|+|+||||||||+++|.++
T Consensus        13 ~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           13 NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence            345678999999999 9999999999999999999985

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.13  E-value=4.1e-07  Score=81.84  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      .+|++++  +.+|+.++|+|+||||||||+++|+|+..+
T Consensus       126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            3666665  889999999999999999999999998543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.13  E-value=6.5e-07  Score=76.66  Aligned_cols=39  Identities=23%  Similarity=0.557  Sum_probs=34.9

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +....+++++++.+.+|  ++|+|+||||||||+++|++..
T Consensus        59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            44567899999999999  9999999999999999999863

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.13  E-value=4.2e-07  Score=74.13  Aligned_cols=37  Identities=27%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ...+.+++..++|++++|+|++|||||||+++|++..
T Consensus        13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445556667889999999999999999999999863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.13  E-value=6.8e-07  Score=71.41  Aligned_cols=31  Identities=19%  Similarity=0.179  Sum_probs=27.5

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +|.+.+|+.++|+|+||+|||||+++|++..
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3566789999999999999999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.11  E-value=9.8e-07  Score=80.57  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      -++++|+|+.|++|+|+|+||||||||+++|+|.+
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            47899999999999999999999999999999983

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.11  E-value=8.1e-07  Score=77.47  Aligned_cols=32  Identities=34%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      |++.+|++++|+|+||||||||+++|+|+..+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccc
Confidence            34556899999999999999999999998544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.10  E-value=9.3e-07  Score=77.42  Aligned_cols=28  Identities=29%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +|++++|+|+||||||||++.|+|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6899999999999999999999998443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.09  E-value=1.7e-06  Score=73.41  Aligned_cols=33  Identities=33%  Similarity=0.651  Sum_probs=28.1

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHh---CCccc--chhh
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILT---GYKIL--RQLW  227 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~---G~~~~--~~~~  227 (240)
                      .+|++++|+|++||||||++++|+   |+..+  +.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            679999999999999999999999   98443  4554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.08  E-value=2e-06  Score=77.92  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=34.7

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCC-----------CCCCCccEEEECC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGY-----------KTSGTEGSITING   91 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~-----------~~~~~~G~V~v~g   91 (240)
                      .+.+|++++|||+||||||||+++|+|.           ...|..|.|.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            4578999999999999999999999993           1236789998876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.08  E-value=6.4e-07  Score=84.55  Aligned_cols=42  Identities=38%  Similarity=0.460  Sum_probs=34.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEE-ECCcc
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SIT-INGHE   93 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~-v~g~~   93 (240)
                      .+++|++++|+|+||||||||+++|++.+ .+.+| .+. ++|.+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDI  408 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcH
Confidence            47899999999999999999999999974 45565 674 77754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.07  E-value=2.5e-06  Score=84.74  Aligned_cols=29  Identities=34%  Similarity=0.570  Sum_probs=27.9

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHH
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLL  214 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLl  214 (240)
                      .|+++||+|++|++++|+|+||||||||+
T Consensus       599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccceEEcCCcEEEEEccCCCChhhhH
Confidence            48999999999999999999999999997

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.07  E-value=1.3e-06  Score=68.91  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|++++|+|++|||||||+++|++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4688999999999999999999996

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.06  E-value=4.3e-07  Score=79.17  Aligned_cols=47  Identities=19%  Similarity=0.218  Sum_probs=39.9

Q ss_pred             eeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310           46 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN   95 (240)
Q Consensus        46 ~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~   95 (240)
                      ++++|+  +|++++|+|+||+||||++..|++.+ .+..|+|.+.+.+..
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ  137 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEECCSS
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcc
Confidence            678888  99999999999999999999999974 345788988776653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.05  E-value=5.6e-07  Score=82.22  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhhc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWLL  229 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~~  229 (240)
                      ..+|+++ + .++|++++|+|+||||||||+++|+|+..+  +.++..
T Consensus       156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~  201 (418)
T 1p9r_A          156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  201 (418)
T ss_dssp             HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence            3466776 4 378999999999999999999999998443  456543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.03  E-value=2.4e-06  Score=66.93  Aligned_cols=29  Identities=31%  Similarity=0.645  Sum_probs=23.8

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.++++.+| +.+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            345555554 89999999999999999987

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.03  E-value=1.4e-06  Score=77.16  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      ...+|++++|+|+||||||||++.|+|+..
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            347899999999999999999999999743

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.03  E-value=8.9e-07  Score=79.24  Aligned_cols=31  Identities=32%  Similarity=0.417  Sum_probs=27.6

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      .+.+|+.++|+|+||||||||+++|+|+..+
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence            5678889999999999999999999998443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.01  E-value=2.6e-06  Score=76.27  Aligned_cols=34  Identities=41%  Similarity=0.643  Sum_probs=30.5

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      ...++++++.+..| .++|+|+||||||||+.+|+
T Consensus        11 f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           11 FLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34567889999999 89999999999999999998

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.00  E-value=1.9e-06  Score=71.93  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.8

Q ss_pred             ceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          190 VSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       190 vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -+...++|++++|+|+||||||||+++|+|+
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3445689999999999999999999999997

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.00  E-value=6.7e-07  Score=78.50  Aligned_cols=31  Identities=32%  Similarity=0.279  Sum_probs=26.3

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +++.+|++++|+|+||+|||||+++|+|+..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence            5567899999999999999999999999743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.99  E-value=6.4e-07  Score=78.58  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=38.2

Q ss_pred             eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310           48 VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER   94 (240)
Q Consensus        48 vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~   94 (240)
                      +++...+|++++|+|+|||||||++..|++.+ .+..|+|.+.+.|.
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~~D~  142 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAADT  142 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECT
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEcccc
Confidence            45667899999999999999999999999974 34567888877664

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.97  E-value=2.9e-06  Score=77.30  Aligned_cols=30  Identities=27%  Similarity=0.540  Sum_probs=27.1

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +++.+|++++|+|||||||||||++|.++.
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            557789999999999999999999999863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.97  E-value=5.2e-06  Score=75.36  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHH--hCCCCCCC-----ccEEEECCcc
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNIL--TGYKTSGT-----EGSITINGHE   93 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L--~G~~~~~~-----~G~V~v~g~~   93 (240)
                      --|++|++++|+||||||||||++.|  .+. .++.     .+.+++++.+
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~-~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQ-IPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhc-cCcccCCCCCcEEEEeCCC
Confidence            36899999999999999999999944  565 4332     3477787765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.96  E-value=2.3e-06  Score=69.76  Aligned_cols=29  Identities=28%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      .+.+|++++|+|++|||||||+++|++.+
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999999999963

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.96  E-value=3.2e-06  Score=68.98  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             eeeeeEE-EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310           44 ILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH   92 (240)
Q Consensus        44 ~L~~vsl-~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~   92 (240)
                      .|+.+.. .|++|++++|+||||||||||++.|++   ....+.+.+...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~   54 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE   54 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence            4555543 689999999999999999999999998   222344555443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.96  E-value=2.6e-06  Score=72.94  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=29.9

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCCcccchhhh
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGYKILRQLWL  228 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~~~~  228 (240)
                      .|.+|++++|+|+||||||||++.|++....+.+|+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~   61 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL   61 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcC
Confidence            478999999999999999999999998644444443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.95  E-value=3.6e-06  Score=72.09  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=26.2

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|.+|++++|+||||||||||++.|++.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999999999984

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.95  E-value=4.9e-06  Score=74.42  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE-EECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V-~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      -|.+|+++.|+||+|||||||+..++... .+..|.| ++++.........+.+++.+|+..+....++++.+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~-~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~  130 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEA-QKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEI  130 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHH
Confidence            58899999999999999999999999852 2334555 5555443333345667777777666555666665543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.95  E-value=4.7e-06  Score=74.58  Aligned_cols=27  Identities=44%  Similarity=0.742  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +|++++|+|+||||||||+++|+|+..
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999999999854

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.94  E-value=1.3e-06  Score=77.04  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=31.2

Q ss_pred             ccceeeccceeEEeCCc------EEEEEcCCCCCHHHHHHHHhCCc
Q psy310          182 HEKTILKSVSGRLRSGE------LTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge------~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ++...+++++..+..++      ++||+|+||||||||+++|+++.
T Consensus        71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34455666666665555      89999999999999999999874

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.94  E-value=4.2e-06  Score=67.53  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=28.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC----CC------CccEEEECCcc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKT----SG------TEGSITINGHE   93 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~----~~------~~G~V~v~g~~   93 (240)
                      +++|+|+||||||||++.|+|...    .+      ..|.|.++|..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~   53 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT   53 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence            589999999999999999999521    12      25778888754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.94  E-value=5.2e-06  Score=64.95  Aligned_cols=31  Identities=29%  Similarity=0.584  Sum_probs=25.2

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      +.+.++.+.+| ..+|+|+|||||||++++|+
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34455556655 89999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.93  E-value=4.9e-06  Score=68.89  Aligned_cols=27  Identities=22%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      -|.+|++++|+|+||||||||++.|++
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999999999999

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.92  E-value=6e-06  Score=77.10  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           40 NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        40 ~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+...+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus        46 ~nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           46 RNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             ESBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ccccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            3444678899999999 9999999999999999999553

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.92  E-value=2e-07  Score=78.45  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc--cchhhh
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKI--LRQLWL  228 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~--~~~~~~  228 (240)
                      +|++.+ ++++|+||||||||||+++|+|+..  .+++|+
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~   60 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF   60 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence            566766 7999999999999999999999843  345554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.91  E-value=1.6e-07  Score=83.33  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      +..+.++.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+ .+..+.|.+.+
T Consensus        35 ~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~-~~~~~~v~v~~   91 (341)
T 2p67_A           35 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL-IREGLKVAVIA   91 (341)
T ss_dssp             CHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred             CchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEe
Confidence            3444555667888999999999999999999999999999999853 23345555433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.91  E-value=4e-06  Score=73.54  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.+++.+.+| +.+|+|+||||||||+++|..+
T Consensus        16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence            4678889999 9999999999999999999855

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.90  E-value=1e-06  Score=77.77  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=28.1

Q ss_pred             eeccceeEEeCC-------cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          186 ILKSVSGRLRSG-------ELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       186 il~~vsl~I~~G-------e~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +++++++.|..|       +.++|+||||+|||||+++|+|..
T Consensus        33 ~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           33 VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            444445555443       789999999999999999999963

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.88  E-value=4.1e-06  Score=65.58  Aligned_cols=26  Identities=35%  Similarity=0.539  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +|+.++|+|+||||||||+++|+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999999974

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.85  E-value=4.3e-06  Score=68.19  Aligned_cols=34  Identities=35%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             eecccee-EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          186 ILKSVSG-RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       186 il~~vsl-~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      .|+.+.. .|.+|++++|+|+||||||||++.|++
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445543 689999999999999999999999998

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.85  E-value=4.9e-06  Score=72.55  Aligned_cols=28  Identities=39%  Similarity=0.563  Sum_probs=24.6

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +.+|++++|+|+||||||||+++|+ +..
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3458999999999999999999999 743

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.84  E-value=6.9e-06  Score=66.93  Aligned_cols=31  Identities=26%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      --++.+|.+++|+|++|||||||+++|+++.
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3467889999999999999999999999963

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.83  E-value=2.7e-05  Score=71.49  Aligned_cols=154  Identities=18%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC-----------CCCCCCccEEEECCccCCchhhhh------------------------
Q psy310           57 LTAIMGPSGAGKSTLLNILTG-----------YKTSGTEGSITINGHERNLSQFRK------------------------  101 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G-----------~~~~~~~G~V~v~g~~~~~~~~~~------------------------  101 (240)
                      +|+|||++|+|||||++.|.|           .......+.+.+.+....+.+...                        
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad  104 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEAD  104 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCC


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCC----ccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHH
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKD----LTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAM  177 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~----l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (240)
                      .+-+|.+   .....+..+.............    ..+.........+.+...+........+...+.--..+......
T Consensus       105 ~il~VvD---~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~  181 (456)
T 4dcu_A          105 VIIFMVN---GREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAE  181 (456)
T ss_dssp             EEEEEEE---SSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred             EEEEEEe---CCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHh


Q ss_pred             hcccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       178 ~~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      .....      .....-...-+++|+|+.|+|||||++.++|
T Consensus       182 ~l~~~------~~~~~~~~~~ki~ivG~~~vGKSslin~l~~  217 (456)
T 4dcu_A          182 HFKNI------PETKYNEEVIQFCLIGRPNVGKSSLVNAMLG  217 (456)
T ss_dssp             TGGGS------CSSCCCTTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             hcccc------cccccccccceeEEecCCCCCHHHHHHHHhC

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.83  E-value=4.9e-06  Score=74.09  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             eeccc-eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          186 ILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       186 il~~v-sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      .|+.+ .+.|.+|++++|+|+||||||||++.|+++.
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45554 5889999999999999999999999999974

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.81  E-value=7.9e-06  Score=74.45  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=27.4

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +++..|++++|+|+||||||||+++|+++..
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            5567789999999999999999999998633

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.79  E-value=9.8e-06  Score=66.64  Aligned_cols=56  Identities=23%  Similarity=0.214  Sum_probs=38.3

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCCC--CCCccEEEE--------CCccCC----chhhhhhceEEcccc
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYKT--SGTEGSITI--------NGHERN----LSQFRKLSCYIMQDN  110 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~~--~~~~G~V~v--------~g~~~~----~~~~~~~~g~v~Q~~  110 (240)
                      +.+++|+|++||||||++++|++.+.  .++.|.+..        .|.+..    ...+...+++++|++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   74 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST   74 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence            56899999999999999999997422  234566654        444322    123455678888764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.79  E-value=8.4e-06  Score=66.45  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=24.9

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+|++++|+|++|||||||+++|+++
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.77  E-value=4.8e-06  Score=72.58  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCcc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHE   93 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~   93 (240)
                      .+|++++|+|+|||||||++..|++.+ .+.+| .|.+.+.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D  143 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTD  143 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecC
Confidence            479999999999999999999999963 33456 56554444

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.77  E-value=1e-05  Score=64.32  Aligned_cols=38  Identities=34%  Similarity=0.463  Sum_probs=29.2

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGH   92 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~   92 (240)
                      .+|++++|+|++||||||++++|++.+. + .|  .+.+++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~   42 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGD   42 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECCh
Confidence            4799999999999999999999998532 2 34  5555553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.77  E-value=7.2e-06  Score=78.22  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc---chhhh
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL---RQLWL  228 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~---~~~~~  228 (240)
                      ++++..   +||+|+||||||||+++|+|+..|   +.+++
T Consensus        42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~   79 (608)
T 3szr_A           42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTR   79 (608)
T ss_dssp             SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCC
T ss_pred             cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEE
Confidence            344443   999999999999999999999645   35544

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.77  E-value=1.1e-05  Score=64.83  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          199 LTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      +++|+|+||||||||++.|+|...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            7999999999999999999997543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.76  E-value=6.1e-06  Score=72.47  Aligned_cols=55  Identities=16%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-hhhhhhceEEccccc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-SQFRKLSCYIMQDNQ  111 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-~~~~~~~g~v~Q~~~  111 (240)
                      .+.|.||+|+|||||+++|++.+..+..|.+.++|.+... ......+++++|.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~   93 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH   93 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence            4899999999999999999993245678999888765421 112344566666543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.76  E-value=6.9e-07  Score=84.11  Aligned_cols=55  Identities=20%  Similarity=0.311  Sum_probs=42.0

Q ss_pred             ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      +..+++...++.++++++ +|++++|+||+|+|||||+++|++.. .+..|.|.+.+
T Consensus        89 vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~  143 (543)
T 3m6a_A           89 VKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG  143 (543)
T ss_dssp             HHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence            344444555678888888 89999999999999999999999963 34456665544

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.75  E-value=1.1e-05  Score=64.71  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++|+...++.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.75  E-value=1.3e-05  Score=65.12  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++||||||++++|+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999983

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.74  E-value=1.8e-05  Score=69.95  Aligned_cols=31  Identities=29%  Similarity=0.584  Sum_probs=24.4

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.+..+++.+| +.+|+|||||||||+|.+|.
T Consensus        14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34455666554 88999999999999999874

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.73  E-value=1.5e-05  Score=65.42  Aligned_cols=29  Identities=28%  Similarity=0.560  Sum_probs=23.4

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.++++.+ .+.+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            34455555 489999999999999999885

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.73  E-value=1e-05  Score=71.94  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             CCceecCCC---ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCC-CCCCccEE
Q psy310           33 TNNNCEPNE---KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK-TSGTEGSI   87 (240)
Q Consensus        33 ~~~~~~~~~---~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~-~~~~~G~V   87 (240)
                      +++.+.++.   ..+|++++++++   .++|||++|||||||++.|.|.. .+...|.+
T Consensus        12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            344444443   468999999998   99999999999999999999941 23344443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.72  E-value=1.5e-05  Score=65.48  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=24.8

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..-+|+.++|+||+|||||||+++|+++
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3457899999999999999999999986

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.70  E-value=1.5e-05  Score=66.65  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             eeeeeEEEEe---CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC
Q psy310           44 ILKSVSGRLR---SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN   90 (240)
Q Consensus        44 ~L~~vsl~I~---~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~   90 (240)
                      -|.+++|.+.   +|.+++|.|++||||||+++.|+..+. + .+.+...
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~   59 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT   59 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence            3667777776   999999999999999999999998643 3 4555543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.70  E-value=1.2e-05  Score=70.81  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.+++|++.+|++++|+|+||+||||++..|+++
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999999999999999986

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.68  E-value=2.3e-05  Score=64.31  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +.+.++.+.+| ..+|+|+|||||||++.+|.-
T Consensus        14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            34455555565 899999999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.67  E-value=1.6e-05  Score=64.34  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|++||||||++++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.66  E-value=1.5e-05  Score=65.99  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             eeeee-EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCc
Q psy310           44 ILKSV-SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH   92 (240)
Q Consensus        44 ~L~~v-sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~   92 (240)
                      .|+.+ ..-+++|++++|+||||||||||+..++........+.+.+...
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            34444 55689999999999999999999655543212222344455443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.66  E-value=4.3e-05  Score=69.78  Aligned_cols=37  Identities=30%  Similarity=0.489  Sum_probs=29.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC-----------CCCccEEEECCcc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKT-----------SGTEGSITINGHE   93 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~-----------~~~~G~V~v~g~~   93 (240)
                      .++|||++|+|||||++.|.|...           .+..|.+.++|..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~  229 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK  229 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence            799999999999999999999621           1356888888864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.66  E-value=8.7e-06  Score=72.42  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      .++.+++|+|++|||||||++.|.|. ..+..|.|.+.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~-~~~~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM-LTERGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH-hhhcCCeEEEEeec
Confidence            35789999999999999999999995 33445666665544

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.65  E-value=2e-05  Score=64.16  Aligned_cols=28  Identities=29%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      ..+|.+++|+||+|||||||++.|+..+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4589999999999999999999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.65  E-value=2.4e-05  Score=69.09  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=25.2

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +.+..+.+.+| +.+|+||||||||||+++|+.
T Consensus        14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             EEEEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            34455556666 899999999999999998843

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.65  E-value=3.8e-05  Score=68.40  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEE-EECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSI-TINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V-~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      -+++|+++.|.||+|||||||+..++..... ..|.+ +++..........+..++.+++..+....++++.+..
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~  130 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEI  130 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence            5789999999999999999998888753222 23444 4443322112223445655555444444456665544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.64  E-value=8.4e-06  Score=72.20  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.+++++++.+.+|.+++|+|++|+|||||++.|++.
T Consensus        42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34577788888999999999999999999999999865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.63  E-value=1.8e-05  Score=71.71  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.+|++++|+|+||+|||||+++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4678999999999999999999999994

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.61  E-value=2.5e-05  Score=61.65  Aligned_cols=26  Identities=46%  Similarity=0.620  Sum_probs=22.8

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+|.+++|+|++|+|||||++.|.+.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999999985

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.59  E-value=1.3e-05  Score=75.53  Aligned_cols=30  Identities=43%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .+++|++++|+|+||||||||+++|+|...
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            578999999999999999999999999743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.58  E-value=2.8e-05  Score=67.49  Aligned_cols=57  Identities=18%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      .++.+++|+|++|||||||++.|.+++.+  .|      .      .++.+.+|+||+.+++ .+..+++.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~--~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~   85 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME--KY------G------GEKSIGYASIDDFYLT-HEDQLKLNE   85 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH--HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh--cC------C------CCceEEEeccccccCC-hHHHHHHhc
Confidence            46789999999999999999999997432  22      0      0233445588887664 345555543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.57  E-value=8.4e-06  Score=66.82  Aligned_cols=42  Identities=26%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc--EEEECCc
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG--SITINGH   92 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G--~V~v~g~   92 (240)
                      +.+.+|.++.|+|++||||||+++.|++.+ .+..|  .+.+++.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLDGD   63 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEECHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEECCh
Confidence            446789999999999999999999999863 33456  6777653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.57  E-value=3e-05  Score=72.32  Aligned_cols=38  Identities=24%  Similarity=0.575  Sum_probs=34.2

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +..+.+++++++.+.+|  +.|+||+|+|||||+++|++.
T Consensus        50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred             hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999  999999999999999999985

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.56  E-value=2.7e-05  Score=68.20  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      .+++...+|++++|+|+|||||||++..|+++.
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            456677899999999999999999999999873

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.55  E-value=1.1e-05  Score=76.67  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL  223 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~  223 (240)
                      ++...+++.+++.+..|+.++|+||+|+|||||+++|+++..+
T Consensus        44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4455678889999999999999999999999999999998543

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.53  E-value=1.1e-05  Score=75.42  Aligned_cols=39  Identities=28%  Similarity=0.440  Sum_probs=34.0

Q ss_pred             cccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          181 IHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       181 ~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+...+++++|.+.+| ..+|+|+||||||||+++|..+
T Consensus        45 i~nf~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           45 IRNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EESBTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cccccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            34556789999999999 9999999999999999999554

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.53  E-value=1.2e-05  Score=73.60  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             ceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC
Q psy310           35 NNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN   95 (240)
Q Consensus        35 ~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~   95 (240)
                      +...++...  ++++|+  ++++++++|++||||||++..|++.+ .+..+.|.+.+.|..
T Consensus        82 L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           82 LKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ  137 (425)
T ss_dssp             HHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEECCSS
T ss_pred             HHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEeecccc
Confidence            334444433  567777  89999999999999999999999974 345678888776653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.52  E-value=4e-05  Score=61.39  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+++++++..+.. +++|+|++|+|||||++.+++-
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999998888 8999999999999999999873

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.51  E-value=1.4e-05  Score=74.49  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=39.9

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER   94 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~   94 (240)
                      ...+++++++.+++|  ++|+||+|+|||||+++|++...   .+.+.+++.+.
T Consensus        52 ~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~  100 (499)
T 2dhr_A           52 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDF  100 (499)
T ss_dssp             CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGG
T ss_pred             chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHH
Confidence            345677888999998  99999999999999999999632   56788877553

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.50  E-value=4.9e-05  Score=63.50  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=24.8

Q ss_pred             eeccceeEEe---CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          186 ILKSVSGRLR---SGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       186 il~~vsl~I~---~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      =|.+++|++.   +|..++|.|++||||||+++.|+..
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3566777766   8999999999999999999999875

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.49  E-value=2.2e-05  Score=70.98  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |+.+.|.+|++++|+||+|+|||||++.|+..
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            89999999999999999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.48  E-value=4.5e-05  Score=60.62  Aligned_cols=25  Identities=36%  Similarity=0.593  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999985

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.47  E-value=4.7e-05  Score=66.16  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ++++|+  +|++++|+|+||+||||++..|+++.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            678888  99999999999999999999999973

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.47  E-value=4.5e-05  Score=61.06  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=20.7

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+++++++..++. .++|+|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            3678899988776 789999999999999999987

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.47  E-value=7.8e-06  Score=71.91  Aligned_cols=46  Identities=20%  Similarity=0.339  Sum_probs=39.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCC
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.+.-+|...+++.++..|..|++  +.|.||+|+||||++++|++.
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            4455556677788999999999998  999999999999999999985

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.44  E-value=4.4e-05  Score=61.80  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ..+++|+|++||||||+++.|++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.44  E-value=2.2e-05  Score=63.41  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+++++++.++.. +++|+|++|+|||||++.+++-
T Consensus        13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence            35788888888887 7999999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.43  E-value=7.2e-05  Score=58.30  Aligned_cols=22  Identities=45%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++|+|||||++.|.|.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.42  E-value=5.2e-05  Score=62.67  Aligned_cols=32  Identities=16%  Similarity=0.394  Sum_probs=26.0

Q ss_pred             eccc-eeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          187 LKSV-SGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       187 l~~v-sl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      |+.+ ..-|.+|+.++|+|+||||||||+..++
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4444 5568999999999999999999965554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.41  E-value=7.3e-05  Score=59.69  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +...+|.++.|+|++||||||+++.|+..
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34468999999999999999999999985

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.40  E-value=4.2e-05  Score=66.50  Aligned_cols=26  Identities=46%  Similarity=0.551  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++.+++|||++|+|||||++.|.|.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34558999999999999999999995

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.40  E-value=7.6e-05  Score=62.14  Aligned_cols=26  Identities=35%  Similarity=0.420  Sum_probs=23.6

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -.+|.+++|+|++||||||++++|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999999997

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.38  E-value=1.2e-05  Score=71.80  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             eeeeeeEEEEeCCCE--EEEECCCCchHHHHHHHHhCC
Q psy310           43 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~--vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++.+++.+++|++  ++|+|++||||||++++|++.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            356777888899999  999999999999999999984

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.37  E-value=9e-06  Score=72.65  Aligned_cols=40  Identities=35%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+...++.+.++++++|.|      +|||++|+|||||++.|.+.
T Consensus        21 ~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           21 ANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred             ccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence            45555666777888888877      99999999999999999885

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.36  E-value=0.0001  Score=66.77  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.8

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -|.+|++++|+|++|||||||++.|+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            58999999999999999999999553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.36  E-value=8.4e-05  Score=64.61  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=25.3

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .+|++++|+|+|||||||++..|++...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999998743

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.35  E-value=9.9e-05  Score=57.56  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++||||||+++.|+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.34  E-value=4.5e-05  Score=71.73  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      ...++.++++++ +|+.++|+||+|+|||||+++|++..
T Consensus        95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A           95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            345667777777 89999999999999999999999863

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.34  E-value=0.00012  Score=57.66  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999999985

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.34  E-value=0.00016  Score=64.74  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=29.8

Q ss_pred             CCCE-EEEECCCCchHHHHHHHHhCCCCC----------CCccEEEECCccC
Q psy310           54 SGEL-TAIMGPSGAGKSTLLNILTGYKTS----------GTEGSITINGHER   94 (240)
Q Consensus        54 ~Ge~-vgLvG~NGSGKSTLLr~L~G~~~~----------~~~G~V~v~g~~~   94 (240)
                      .|-. ++|+|++|||||||++.|+|....          +..|.+.++|..+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            3455 999999999999999999996321          3467888877543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.33  E-value=3.3e-05  Score=69.00  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             eeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+++.+++.|.+|++  ++|+|++||||||+.++|++.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            367778888889988  999999999999999999985

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.32  E-value=7.9e-05  Score=64.63  Aligned_cols=28  Identities=21%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .++.+|+|+|++|||||||++.|+++..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4678999999999999999999999744

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.32  E-value=1e-05  Score=70.58  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             ee-eEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC
Q psy310           46 KS-VSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER   94 (240)
Q Consensus        46 ~~-vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~   94 (240)
                      ++ ++|+++ +++++++|++|+||||++..|++.+ .+..++|.+.+.+.
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~-~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY-KKKGFKVGLVGADV  136 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence            45 777765 9999999999999999999999863 34466787766554

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.32  E-value=0.00011  Score=65.62  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=27.7

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      ..++++++.+.+| ..+|+|+|||||||++.+|+
T Consensus        14 r~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           14 KSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            3456667777776 89999999999999999986

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.30  E-value=0.00012  Score=58.10  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999984

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.30  E-value=0.00013  Score=57.65  Aligned_cols=22  Identities=45%  Similarity=0.661  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++|+|||||++.|.+.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.26  E-value=0.00012  Score=64.99  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.+|+|+|++|||||||++.|+|.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.25  E-value=0.00016  Score=57.29  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|.++.|.|++||||||+++.|+..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999873

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.25  E-value=1.8e-05  Score=63.94  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ..+++++++..++. .++|+|++|+|||||++.+.+
T Consensus        13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            35778888877776 579999999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=7.9e-05  Score=62.59  Aligned_cols=44  Identities=27%  Similarity=0.609  Sum_probs=28.6

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      ++.+++.+.+|  +.|+||+|+|||||+++|++....+   .+.+++.+
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~   80 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSD   80 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCS
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHH
Confidence            44445555554  8999999999999999999863322   35666544

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.23  E-value=0.00013  Score=64.72  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=27.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+|+++++++.   .|+|+|+.|||||||+++|+|.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            357888888887   8999999999999999999994

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.23  E-value=0.00016  Score=56.13  Aligned_cols=19  Identities=37%  Similarity=0.632  Sum_probs=18.4

Q ss_pred             EEEEECCCCchHHHHHHHH
Q psy310           57 LTAIMGPSGAGKSTLLNIL   75 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L   75 (240)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.22  E-value=0.0002  Score=63.96  Aligned_cols=31  Identities=23%  Similarity=0.435  Sum_probs=26.1

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +++..+++.+ .+.+|+|+|||||||+|.+|.
T Consensus        16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            4667777766 489999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.21  E-value=0.00015  Score=65.65  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      |+.+.|.+|++++|+|++|+|||||++.|+.+
T Consensus       166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            78899999999999999999999999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.20  E-value=0.00018  Score=65.13  Aligned_cols=41  Identities=27%  Similarity=0.435  Sum_probs=31.5

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCC----------CCCCccEEEECC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYK----------TSGTEGSITING   91 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~----------~~~~~G~V~v~g   91 (240)
                      .+..+..++|||++|+|||||+++|+|..          ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            45788999999999999999999999951          124567776654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.19  E-value=5.7e-05  Score=72.71  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEE
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSI   87 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V   87 (240)
                      ++.+.+++.++|+|++|+|||||++.|.+.... +..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            467789999999999999999999999964221 245666

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.00016  Score=58.48  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhC
Q psy310          197 GELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       197 Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      .-+|+|+|++||||||+++.|++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999964

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.18  E-value=0.00016  Score=60.70  Aligned_cols=34  Identities=26%  Similarity=0.663  Sum_probs=24.8

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..++.+.+.+.+|  +.|+|++|+|||||+++|++.
T Consensus        35 ~~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           35 SRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             GGC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence            4566666666666  999999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.17  E-value=0.00016  Score=59.12  Aligned_cols=28  Identities=36%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.+|..++|+|.+||||||+++.|++.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=6e-05  Score=66.18  Aligned_cols=36  Identities=25%  Similarity=0.483  Sum_probs=29.5

Q ss_pred             eeeccceeEEeCCcE--EEEEcCCCCCHHHHHHHHhCC
Q psy310          185 TILKSVSGRLRSGEL--TAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~--valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+++.++..|+.|+.  +.|.||+|+||||++++|++.
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            355555666677776  999999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.15  E-value=0.00021  Score=57.20  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++||||||+++.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.15  E-value=0.0002  Score=57.50  Aligned_cols=38  Identities=34%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCCC--CCccEEEECCcc
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKTS--GTEGSITINGHE   93 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~~--~~~G~V~v~g~~   93 (240)
                      .+++|+|++|||||||++.|.+.+..  ..-|.|...+++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            57999999999999999999885221  123666665543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.14  E-value=0.00019  Score=62.47  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             cc-ceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          188 KS-VSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       188 ~~-vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+ ++|+++ |.+++++|++|+||||++..|++.
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~  121 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF  121 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence            56 788876 999999999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.13  E-value=0.00025  Score=56.23  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.++.|+|++||||||+.+.|+..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.13  E-value=0.00022  Score=59.97  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCchHHHHHHHHhC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .-+++|+||+||||||+++.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999995

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.13  E-value=0.00018  Score=56.71  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+|++||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.12  E-value=0.0002  Score=60.56  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+||+|||||||.+.|+..
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            6899999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.12  E-value=0.00021  Score=56.84  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999863

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.10  E-value=0.00024  Score=56.22  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++.++.|+|++||||||+++.|+.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3577899999999999999999984

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.09  E-value=0.00035  Score=63.76  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             ccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          188 KSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       188 ~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ++++|+  +|++++++|++||||||++..|+++
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            678887  8999999999999999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.09  E-value=0.00027  Score=55.40  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|++||||||+.+.|+.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            689999999999999999986

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.09  E-value=0.00026  Score=57.86  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCchHHHHHHHHhC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +-+++|+|++||||||+++.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.08  E-value=0.00018  Score=60.68  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      ...++.++.|+|++||||||+.+.|+..+.   .+.+.+++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~   67 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS   67 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence            456788999999999999999999998532   2456676643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.07  E-value=0.00037  Score=57.81  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|++|+|||||++.|.|.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999995

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.06  E-value=0.00035  Score=56.12  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999863

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.04  E-value=0.00019  Score=67.06  Aligned_cols=47  Identities=15%  Similarity=0.121  Sum_probs=35.1

Q ss_pred             eeEEEEeCCCEEEEECCCCchHHHHHHHHhC-CCCCCCccEEEECCcc
Q psy310           47 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHE   93 (240)
Q Consensus        47 ~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G-~~~~~~~G~V~v~g~~   93 (240)
                      .+.+++.++.+++|+|++||||||+++.|.. +......+++.+...|
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD  206 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID  206 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence            5789999999999999999999999998875 2122334556554433

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.04  E-value=0.00032  Score=56.46  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|-+++|.|+.||||||+.+.|+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.03  E-value=0.00029  Score=56.47  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=21.1

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++|+|++||||||+.+.|+..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            47999999999999999999974

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.01  E-value=0.00016  Score=58.65  Aligned_cols=22  Identities=55%  Similarity=0.738  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++||||||+++.|+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.01  E-value=0.00034  Score=55.76  Aligned_cols=26  Identities=19%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++-+++|+|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            35779999999999999999999863

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.00  E-value=0.00037  Score=56.34  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.9

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+|-+++|.|+.||||||+.+.|+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999999986

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.00  E-value=0.00035  Score=55.37  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.98  E-value=0.00035  Score=56.68  Aligned_cols=21  Identities=57%  Similarity=0.738  Sum_probs=18.8

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|+||||||||||++.|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.0002  Score=60.42  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=24.3

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      ...++..+.|+|++||||||+.+.|+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            566788999999999999999999976

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.97  E-value=0.00041  Score=57.53  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          199 LTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +|+|+|++|+|||||++.|+|...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            699999999999999999999644

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.97  E-value=0.00018  Score=64.49  Aligned_cols=36  Identities=22%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEEC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITIN   90 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~   90 (240)
                      .+..++|+|++|||||||++.|..... ...+.|.+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~   69 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIII   69 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEE
Confidence            677899999999999999999988532 344556553

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.96  E-value=0.00042  Score=56.02  Aligned_cols=25  Identities=40%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+|-+++|+|+.||||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999985

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.94  E-value=0.00026  Score=63.06  Aligned_cols=33  Identities=39%  Similarity=0.462  Sum_probs=27.9

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      .+.+.++++|.|      +|+|++|+|||||++.|.|..
T Consensus        29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            455777888766      999999999999999998863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.94  E-value=0.00039  Score=55.02  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+|++||||||+.+.|+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.94  E-value=0.0003  Score=65.17  Aligned_cols=37  Identities=24%  Similarity=0.586  Sum_probs=31.9

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .....++++++.+.+|  +.|+||+|+|||||+++|++.
T Consensus        36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            3455788888888888  899999999999999999973

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.90  E-value=0.00039  Score=60.00  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      ..+..+.|+||+||||||+.+.|+..+.   .+.+.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence            3567899999999999999999986422   25566765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.90  E-value=0.00047  Score=61.52  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=25.6

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -|.+|+++.|+|++|||||||+..++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999999998875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.89  E-value=0.00051  Score=62.59  Aligned_cols=24  Identities=38%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      -+++|+|++|+|||||++.|+|..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            389999999999999999999974

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.87  E-value=0.00062  Score=55.73  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|-++.|+|+.||||||+.+.|+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.86  E-value=0.00048  Score=58.49  Aligned_cols=22  Identities=41%  Similarity=0.709  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|++|||||||++.|.|.
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999995

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.86  E-value=0.00055  Score=55.02  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999884

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.86  E-value=0.00055  Score=55.68  Aligned_cols=21  Identities=33%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.85  E-value=0.00043  Score=54.57  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=18.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.++.|.|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5678999999999999999999864

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.84  E-value=0.00046  Score=62.42  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=25.0

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      .+..|.+++|+|++|+|||||+++|+|..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~   46 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ   46 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45678899999999999999999999973

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.84  E-value=0.00058  Score=54.47  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ..+-+++|+|+.||||||+.+.|+..
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.81  E-value=0.00053  Score=59.21  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      +.+.++..+.|.||+|+|||||+++|++...   .+.+.+++
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~   82 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKG   82 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEh
Confidence            3467899999999999999999999998632   34566654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.80  E-value=0.00065  Score=55.31  Aligned_cols=22  Identities=32%  Similarity=0.330  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.78  E-value=0.00059  Score=53.28  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.78  E-value=0.00084  Score=54.07  Aligned_cols=25  Identities=36%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+-+++|+|+.||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.77  E-value=0.00074  Score=52.51  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.77  E-value=0.00078  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++++|+|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.77  E-value=0.0007  Score=55.75  Aligned_cols=26  Identities=31%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++.+++|+|+.||||||+++.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.76  E-value=0.00073  Score=53.54  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.75  E-value=0.00078  Score=53.84  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++|+|++|||||||+..|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            37899999999999999998874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.74  E-value=0.00066  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5899999999999999999884

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.73  E-value=0.00072  Score=51.79  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.00072  Score=53.48  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -=.++|+|+.|+|||||++.|.+.
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            347999999999999999999985

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.73  E-value=0.00089  Score=51.73  Aligned_cols=22  Identities=27%  Similarity=0.650  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            5899999999999999999984

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.72  E-value=0.00066  Score=53.75  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.0009  Score=51.34  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999873

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.72  E-value=0.00096  Score=59.23  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=24.3

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      -|.+|+.+.|.|++|||||||+..++.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~   83 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVA   83 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999887774

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.72  E-value=0.00053  Score=56.90  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.+|+.++|+||+||||||++.++..
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            45799999999999999998876653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.71  E-value=0.00092  Score=51.42  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.70  E-value=0.00078  Score=53.25  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++|+|+.||||||+.+.|+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.69  E-value=0.00084  Score=56.34  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|.|+.||||||+.+.|+..
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999873

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.69  E-value=0.0012  Score=57.96  Aligned_cols=38  Identities=32%  Similarity=0.209  Sum_probs=33.4

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.....++...+.+ .|.-++|+|+||+|||||+..|.+
T Consensus       129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            44567889988888 788999999999999999999987

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.67  E-value=0.00087  Score=51.04  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999884

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.67  E-value=0.00078  Score=53.17  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|++|+|||||++.+.+.
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999884

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.66  E-value=0.00095  Score=54.22  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999863

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.66  E-value=0.00093  Score=51.83  Aligned_cols=22  Identities=41%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.65  E-value=0.00079  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.65  E-value=0.00097  Score=53.63  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ..+++|+|+.||||||+.+.|+..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999853

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.65  E-value=0.00091  Score=50.96  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.65  E-value=0.00079  Score=55.14  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+-++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.64  E-value=0.00091  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.64  E-value=0.0014  Score=57.27  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5889999999999999999999988763

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.64  E-value=0.00062  Score=63.56  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhC--C--cccchhhhccCChh
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTG--Y--KILRQLWLLEYSHK  234 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G--~--~~~~~~~~~~~~~~  234 (240)
                      .+.+.+.++++++|+|.+||||||+++.|..  +  ..++++.+.-.|||
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            4678889999999999999999999999875  2  23455544444555

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.64  E-value=0.00025  Score=65.04  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCccCC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHERN   95 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~~~   95 (240)
                      -+.|+.+..-+.+|+++.|.|++|+|||||+..|++... +..| .|.+.+.+..
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMS  243 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSC
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCC
Confidence            356888887899999999999999999999999988422 2234 5666555443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.63  E-value=0.00094  Score=51.33  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.63  E-value=0.00061  Score=62.43  Aligned_cols=52  Identities=17%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc----chhhh-ccCChhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL----RQLWL-LEYSHKDL  236 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~----~~~~~-~~~~~~~~  236 (240)
                      ..|+.+..-+++|+.+.|.|++|+|||||+..|++.-.+    .=+|+ +|.|+..+
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l  247 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQL  247 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHH
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence            457777778999999999999999999999998885322    23445 67776554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.62  E-value=0.00097  Score=51.15  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999884

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.62  E-value=0.0014  Score=50.77  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.-.++|+|+.|+|||||++.|.+
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            455799999999999999999987

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.62  E-value=0.001  Score=59.41  Aligned_cols=28  Identities=36%  Similarity=0.538  Sum_probs=21.6

Q ss_pred             eCCcE-EEEEcCCCCCHHHHHHHHhCCcc
Q psy310          195 RSGEL-TAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       195 ~~Ge~-valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      +.|-+ |+|+|++|||||||++.|+|...
T Consensus       176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             ---CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred             hcCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence            34555 99999999999999999999743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.61  E-value=0.0011  Score=56.78  Aligned_cols=22  Identities=36%  Similarity=0.712  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|++|+|||||++.|.|.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999994

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.60  E-value=0.00029  Score=65.22  Aligned_cols=33  Identities=27%  Similarity=0.615  Sum_probs=27.3

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++++++.+++|  +.|+||+|+|||||+++|++.
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            345566666776  889999999999999999984

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.60  E-value=0.001  Score=50.93  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.59  E-value=0.001  Score=51.58  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988773

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.58  E-value=0.0019  Score=53.11  Aligned_cols=39  Identities=28%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ......++..-+.+ .|..++|+||+|||||||+..|+..
T Consensus        19 ~a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           19 LAERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             --CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             cCcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            33445677766665 6889999999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.58  E-value=0.0011  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999986

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0011  Score=52.44  Aligned_cols=24  Identities=38%  Similarity=0.584  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      -+++|+|+.|+|||||++.|++-.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.58  E-value=0.00095  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.57  E-value=0.001  Score=52.57  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      =.++|+|+.|+|||||++.|.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999984

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.57  E-value=0.00079  Score=58.79  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhC
Q psy310          197 GELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       197 Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +..+.|.|++|+|||||+++|++
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34599999999999999999999

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.56  E-value=0.0014  Score=53.36  Aligned_cols=25  Identities=16%  Similarity=0.328  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++..+.|.||.|+|||||++.|+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.56  E-value=0.0023  Score=50.67  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=0.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC----CCCCcc----EEEECCc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYK----TSGTEG----SITINGH   92 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~----~~~~~G----~V~v~g~   92 (240)
                      .++|+|++|+|||||++.+.+-.    ..+..+    .+.+++.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   65 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ   65 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.56  E-value=0.0011  Score=52.23  Aligned_cols=22  Identities=45%  Similarity=0.539  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999985

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.56  E-value=0.0011  Score=51.33  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.56  E-value=0.00082  Score=58.02  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=25.2

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.+..+..+.|.|++|+|||||+++|++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            34567788999999999999999999974

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.56  E-value=0.0011  Score=58.56  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -+++|+++.|.||+|||||||+..|+.
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~  144 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCV  144 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999998887

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.55  E-value=0.0019  Score=57.76  Aligned_cols=37  Identities=32%  Similarity=0.415  Sum_probs=28.1

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCC----------CCCCccEEEECC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYK----------TSGTEGSITING   91 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~----------~~~~~G~V~v~g   91 (240)
                      |-.++|||.+|+|||||+++|.+..          ..|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            4578999999999999999999831          123457766654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.55  E-value=0.001  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.54  E-value=0.0011  Score=51.92  Aligned_cols=22  Identities=45%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5899999999999999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.54  E-value=0.0011  Score=52.06  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      .++|+|+.|+|||||++.|.|..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999999853

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.53  E-value=0.0013  Score=51.97  Aligned_cols=24  Identities=38%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      -+++|+|+.|+|||||++.|++-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.53  E-value=0.0013  Score=51.68  Aligned_cols=24  Identities=46%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      -+++|+|+.|+|||||++.|++-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            379999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.52  E-value=0.0013  Score=55.06  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++-+++|+|+.||||||+.+.|+.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.52  E-value=0.0013  Score=55.57  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.++.|+|++||||||+.+.|+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999986

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.52  E-value=0.0012  Score=51.96  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999884

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.52  E-value=0.00093  Score=52.18  Aligned_cols=23  Identities=39%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      =+|+|+|++|+|||||++.+++-
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.52  E-value=0.0011  Score=56.74  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -+++|.|+.||||||+++.|+.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999984

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.51  E-value=0.0012  Score=50.43  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.|.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999986

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.51  E-value=0.0014  Score=54.07  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.51  E-value=0.0014  Score=50.73  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.51  E-value=0.0027  Score=51.11  Aligned_cols=36  Identities=22%  Similarity=0.099  Sum_probs=28.6

Q ss_pred             CceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           41 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        41 ~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++..++..-+.+ .|.-++|.|+||+|||||+..|..
T Consensus         3 ~~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            3 AKQTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             -CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             ccEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            345666666665 688999999999999999988865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.50  E-value=0.0013  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999873

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.48  E-value=0.0013  Score=51.50  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.|.+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.48  E-value=0.0013  Score=56.55  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      .++-.+.|+|++||||||+.+.|+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            346689999999999999999996

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.47  E-value=0.00086  Score=52.39  Aligned_cols=22  Identities=41%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      =.++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999999985

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.46  E-value=0.0014  Score=51.93  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.|+|||||++.|.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.46  E-value=0.0013  Score=52.71  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +|+|+|+.|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.46  E-value=0.0014  Score=50.36  Aligned_cols=21  Identities=43%  Similarity=0.542  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999976

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.45  E-value=0.0014  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999976

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.45  E-value=0.0015  Score=55.73  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++..+.|.||+|+|||||+++|++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            5778999999999999999999985

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.45  E-value=0.0015  Score=53.46  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|-++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.44  E-value=0.0015  Score=51.68  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q psy310          199 LTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +|+|+|+.|+|||||++.|++-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            69999999999999999998853

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.43  E-value=0.0015  Score=50.94  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++|+|+.|+|||||++.|.+
T Consensus        20 ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	5e-19
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	9e-10
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-18
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-12
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	4e-18
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-09
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-17
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	6e-08
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-16
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-10
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-16
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	6e-08
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-16
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-10
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	5e-16
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-10
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	7e-16
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-09
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-15
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	2e-09
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-15
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-10
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-15
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	8e-10
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	4e-15
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-10
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	9e-15
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-10
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-14
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-09
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-14
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-09
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	4e-14
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	6e-09
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-12
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-07
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-12
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	5e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-11
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	6e-10
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-07
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-05
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.001
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	5e-05
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.003
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-04
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-04
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	3e-04
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	0.004
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	5e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	8e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	9e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	9e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.002
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.001
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.001
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.001
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.001
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.001
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	0.001
d1znwa1	182	c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu	0.001
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.002
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	0.003
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	0.002
d1s96a_	205	c.37.1.1 (A:) Guanylate kinase {Escherichia coli [	0.003
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.003
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.003
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.004
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.004

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 80.6 bits (199), Expect = 5e-19
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQF 99
             T +  ++  ++ GE   ++GPSG GK+T L ++ G +   TEG I     +   L   
Sbjct: 18  NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEGRIYFGDRDVTYLPPK 76

Query: 100 RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            +    + Q   +  ++TV E  N+A  LK+ K   K      VR  
Sbjct: 77  DRNISMVFQSYAVWPHMTVYE--NIAFPLKIKK-FPKDEIDKRVRWA 120

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             T +  ++  ++ GE   ++GPSG GK+T L ++ G
Sbjct: 18  NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 54

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 78.1 bits (192), Expect = 3e-18
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE---RNLS 97
           E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G  +   +GSI   G      + +
Sbjct: 11  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSAT 68

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDV 142
           +      Y+ Q         V   + +    K   +L       +
Sbjct: 69  KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL 113

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 170 SVLLALAMYNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           S+++ L     + E T L  +SG +R+GE+  ++GP+GAGKSTLL  + G
Sbjct: 1   SIVMQL---QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 47

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 78.3 bits (193), Expect = 4e-18
 Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 14/135 (10%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
             NE  ILK ++  +  GE  A +G SG GKSTL+N++  +    T G I I+GH   + 
Sbjct: 27  NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-TSGQILIDGHNIKDF 85

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKD------LTKAARKDVVRTLFY 148
                R     + QDN L  + TV+E  N+        D         A   D +  L  
Sbjct: 86  LTGSLRNQIGLVQQDNILF-SDTVKE--NILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 142

Query: 149 RSDTNHAQRCF-LSG 162
             DT   +R   LSG
Sbjct: 143 GYDTEVGERGVKLSG 157

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +E  ILK ++  +  GE  A +G SG GKSTL+N++  
Sbjct: 29  NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
                L +VS  + +G++  ++G SGAGKSTL+  +   +   TEGS+ ++G       E
Sbjct: 16  RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSE 74

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             L++ R+    I Q   L ++ TV    NVA  L+L        ++ V   L
Sbjct: 75  SELTKARRQIGMIFQHFNLLSSRTVFG--NVALPLELDNTPKDEVKRRVTELL 125

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (118), Expect = 6e-08
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
                   L +VS  + +G++  ++G SGAGKSTL+  +   
Sbjct: 13  QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING--HERNLSQ 98
           +K ILK +S  +  GE+  ++GP+GAGK+T L I++      + G +T+ G        +
Sbjct: 14  KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHE 72

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
            RKL  Y+ ++   + N+   E +            + +  +++V   
Sbjct: 73  VRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEEMVERA 117

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           RI +K ILK +S  +  GE+  ++GP+GAGK+T L I++ 
Sbjct: 11  RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 50

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 73.3 bits (180), Expect = 2e-16
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
                LK+V+  ++ GE  +IMGPSG+GKST+LNI+       TEG + I+        +
Sbjct: 16  EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTNDLDD 74

Query: 94  RNLSQFRKLSC-YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLF 147
             L++ R+    ++ Q   L   LT  E + +    K    ++   R+       
Sbjct: 75  DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL 129

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
                LK+V+  ++ GE  +IMGPSG+GKST+LNI+  
Sbjct: 16  EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 73.3 bits (180), Expect = 3e-16
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 19/122 (15%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE------- 93
              +LK VS + R+G++ +I+G SG+GKST L  +   +   +EG+I +NG         
Sbjct: 14  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVNGQNINLVRDK 72

Query: 94  ---------RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
                      L   R     + Q   L +++TV E  NV  A      L+K   ++   
Sbjct: 73  DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE--NVMEAPIQVLGLSKHDARERAL 130

Query: 145 TL 146
             
Sbjct: 131 KY 132

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              +LK VS + R+G++ +I+G SG+GKST L  +  
Sbjct: 14  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 50

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 72.3 bits (177), Expect = 5e-16
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQ 98
            E  + K ++  +  GE    +GPSG GKSTLL ++ G +T  T G + I     N    
Sbjct: 11  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRMNDTPP 69

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
             +    + Q   L+ +L+V E  N++  LKL     +   + V +  
Sbjct: 70  AERGVGMVFQSYALYPHLSVAE--NMSFGLKLAGAKKEVINQRVNQVA 115

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E  + K ++  +  GE    +GPSG GKSTLL ++ G
Sbjct: 12  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 48

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 72.2 bits (177), Expect = 7e-16
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 39  PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERN 95
            + + IL+ +S   +   + A  GPSG GKST+ ++L  +    T G ITI+G      +
Sbjct: 12  DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-TAGEITIDGQPIDNIS 70

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
           L  +R    ++ QD+ + A    E            +DL +    
Sbjct: 71  LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            + IL+ +S   +   + A  GPSG GKST+ ++L  
Sbjct: 14  SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
              E   L++++ ++ +G+  A++G SG+GKST+ +++T +     EG I ++GH   E 
Sbjct: 24  PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-YDIDEGHILMDGHDLREY 82

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK----DVVRTLFYRS 150
            L+  R     + Q+  L  +          T     + + +AAR     D +  +    
Sbjct: 83  TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL 142

Query: 151 DTNHAQRCF-LSG 162
           DT   +    LSG
Sbjct: 143 DTIIGENGVLLSG 155

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 12/38 (31%), Positives = 27/38 (71%)

Query: 182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
            E   L++++ ++ +G+  A++G SG+GKST+ +++T 
Sbjct: 26  REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQF 99
            E   L  VS  +  G++T I+GP+G+GKSTL+N++TG+  +  EG +     +    + 
Sbjct: 15  GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEP 73

Query: 100 ----RKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVR 144
                       Q  Q    +TV E + +         L     K  + 
Sbjct: 74  AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E   L  VS  +  G++T I+GP+G+GKSTL+N++TG
Sbjct: 16  EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 52

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (174), Expect = 3e-15
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 8/148 (5%)

Query: 19  NNTNNTNNTNTNTNTNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 78
           +N +  ++++ N  + ++       +LK+++  +  GE+ AI G +G+GK++LL ++ G 
Sbjct: 26  SNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 85

Query: 79  KTSGTEGSITINGHERNLSQFRKL-SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKA 137
             + +EG I  +G     SQF  +    I ++     +       +V  A +L +D+TK 
Sbjct: 86  LEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF 144

Query: 138 ARKDVVRTLFYRSDTNH----AQRCFLS 161
           A +D   T+              R  L+
Sbjct: 145 AEQD--NTVLGEGGVTLSGGQRARISLA 170

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
             +LK+++  +  GE+ AI G +G+GK++LL ++ G
Sbjct: 49  NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 84

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 69.2 bits (169), Expect = 4e-15
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFR 100
           +K +L+ ++  +  G +    GP+G GK+TLL  ++ Y     +G I  NG      + +
Sbjct: 13  DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIYNGVPIT--KVK 69

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL 160
               ++ ++  +   ++VE+   +     L                    D         
Sbjct: 70  GKIFFLPEEIIVPRKISVED--YLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELS 127

Query: 161 SGPW 164
            G  
Sbjct: 128 QGTI 131

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY 220
           +K +L+ ++  +  G +    GP+G GK+TLL  ++ Y
Sbjct: 13  DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 50

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 69.0 bits (168), Expect = 9e-15
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------E 93
            +   L +V+  + +GE   I+GPSGAGK+T + I+ G     + G +  +        +
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-STGELYFDDRLVASNGK 74

Query: 94  RNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTN 153
             +    +    + Q   L+ NLT  E  N+A  L     ++K   +  V  +    D +
Sbjct: 75  LIVPPEDRKIGMVFQTWALYPNLTAFE--NIAFPLTN-MKMSKEEIRKRVEEVAKILDIH 131

Query: 154 HAQRCF 159
           H    F
Sbjct: 132 HVLNHF 137

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 55.1 bits (132), Expect = 7e-10
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           +   L +V+  + +GE   I+GPSGAGK+T + I+ G
Sbjct: 17  KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 41  EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ERNLS 97
           +  +L+ ++  LR GE+TA++GP+G+GKST+  +L       T G + ++G    +    
Sbjct: 26  DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-TGGQLLLDGKPLPQYEHR 84

Query: 98  QFRKLSCYIMQDNQLHANLTVEEAMNV-----ATALKLGKDLTKAARKDVVRTLFYRSDT 152
              +    + Q+ Q+    +++E +        T  ++     K+     +  L    DT
Sbjct: 85  YLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDT 143

Query: 153 NHAQRCF-LSG 162
              +    LSG
Sbjct: 144 EVDEAGSQLSG 154

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 28/42 (66%)

Query: 178 YNRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           Y    +  +L+ ++  LR GE+TA++GP+G+GKST+  +L  
Sbjct: 21  YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 42  KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING-HERNLSQFR 100
              L ++S ++ SGE   I+GP+GAGK+  L ++ G+      G I ++G    +LS  +
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-DSGRILLDGKDVTDLSPEK 71

Query: 101 KLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFL 160
               ++ Q+  L  ++ V++  N+   +++ K        D  R L      +       
Sbjct: 72  HDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLS 129

Query: 161 SGPW 164
            G  
Sbjct: 130 GGEQ 133

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              L ++S ++ SGE   I+GP+GAGK+  L ++ G
Sbjct: 13  NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 38  EPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH---ER 94
           +P+   IL +++  ++ GE+  I+G SG+GKSTL  ++  +      G + I+GH     
Sbjct: 12  KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLIDGHDLALA 70

Query: 95  NLSQFRKLSCYIMQDNQLHANLTVE---EAMNVATALKLGKDLTKAARKDVVRTLFYRSD 151
           + +  R+    ++QDN L     ++    A    +  K+      A   D +  L    +
Sbjct: 71  DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYN 130

Query: 152 TNHAQRCF-LSG 162
           T   ++   LSG
Sbjct: 131 TIVGEQGAGLSG 142

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
              IL +++  ++ GE+  I+G SG+GKSTL  ++  
Sbjct: 15  SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 55  GELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE-RNLSQFRKLSCYIMQDNQLH 113
            +   ++GP+GAGKS  L ++ G       G + +NG +   L   R+   ++ QD  L 
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALF 82

Query: 114 ANLTVEEAMNVATALKLGKDLTKAARK 140
            +L+V   +          +  +  R+
Sbjct: 83  PHLSVYRNIAYGLRNVERVERDRRVRE 109

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 197 GELTAIMGPSGAGKSTLLNILTG 219
            +   ++GP+GAGKS  L ++ G
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAG 46

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH------- 92
            E T ++ +S  ++ GE   ++GPSG GK+T L ++ G +   + G I I          
Sbjct: 14  GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRGQIYIGDKLVADPEK 72

Query: 93  ERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL 146
              +    +    + Q   L+ ++TV +  N+A  LKL K   +   + V    
Sbjct: 73  GIFVPPKDRDIAMVFQSYALYPHMTVYD--NIAFPLKLRKVPRQEIDQRVREVA 124

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
           E T ++ +S  ++ GE   ++GPSG GK+T L ++ G
Sbjct: 15  EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 1/102 (0%)

Query: 40  NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-YKTSGTEGSITINGHERNLSQ 98
                +K +  ++  G++  ++G +GAGK+T L+ + G  +    +            + 
Sbjct: 17  GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARK 140
                   +          +    N+       KD     R 
Sbjct: 77  VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 55.3 bits (133), Expect = 6e-10
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG 219
               +K +  ++  G++  ++G +GAGK+T L+ + G
Sbjct: 18  AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 1/56 (1%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHA 114
            I G  G GK+TL+  +                     ++ R     I  + +   
Sbjct: 4   IITGEPGVGKTTLVKKIVER-LGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 201 AIMGPSGAGKSTLLNILTG 219
            I G  G GK+TL+  +  
Sbjct: 4   IITGEPGVGKTTLVKKIVE 22

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 18/55 (32%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH 113
            I GP  +GK++LL +LT      T  S               L  +       +
Sbjct: 7   IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
            I GP  +GK++LL +LT   +
Sbjct: 7   IIAGPQNSGKTSLLTLLTTDSV 28

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 35  NNCEPNEKTILKSVSGRLRSGELT----AIMGPSGAGKSTLLNILTGYKTS------GTE 84
           N   P  +T L  + G L+  ++      +MG  G GKS+ +N + G +           
Sbjct: 8   NTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG 67

Query: 85  GSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDL 134
               +    R       +    + +     ++ +    +      +   L
Sbjct: 68  PRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 117

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 183 EKTILKSVSGRLRSGELT----AIMGPSGAGKSTLLNILTGYKI 222
            +T L  + G L+  ++      +MG  G GKS+ +N + G ++
Sbjct: 14  TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV 57

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHAN 115
             +G   +GK+ L   L   +   T+ SIT +     ++  R  S  ++      + 
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 51  RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110
           +  SG   AI+G    GKSTLLN L G K +                        +  D 
Sbjct: 2   KTYSG-FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDT 60

Query: 111 QLH 113
              
Sbjct: 61  PGL 63

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 193 RLRSGELTAIMGPSGAGKSTLLNILTGYKI 222
           +  SG   AI+G    GKSTLLN L G K+
Sbjct: 2   KTYSG-FVAIVGKPNVGKSTLLNNLLGVKV 30

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 19/52 (36%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDN 110
           AI+G    GKSTLLN L G K S T        H             I  D 
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 60

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
           AI+G    GKSTLLN L G KI 
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKIS 31

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 11/131 (8%)

Query: 45  LKSVSGRLRSGELTAIMGPSGAGKSTLL-----NILTG----YKTSGTEGSITINGHERN 95
           L  V   + +G + A++ P GAGKS L       I  G           G +     E  
Sbjct: 19  LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 78

Query: 96  LSQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA 155
            +        +           V + + +   +    ++      D ++           
Sbjct: 79  PTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVL 138

Query: 156 Q--RCFLSGPW 164
              R F     
Sbjct: 139 DTLRRFHIEEE 149

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 187 LKSVSGRLRSGELTAIMGPSGAGKSTLL 214
           L  V   + +G + A++ P GAGKS L 
Sbjct: 19  LDYVLPNMVAGTVGALVSPGGAGKSMLA 46

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 12/55 (21%), Positives = 18/55 (32%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLH 113
            I+G    GKSTL N L   K +  E    +       +       + + D    
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 58

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
            I+G    GKSTL N L   K 
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKK 25

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
            ++G    GKSTLL++++  K 
Sbjct: 5   GLVGFPSVGKSTLLSVVSSAKP 26

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
           ++G    GKSTLL++++  K  
Sbjct: 5  GLVGFPSVGKSTLLSVVSSAKPK 27

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
            ++G   AGKS+LL  +T    
Sbjct: 5   GLVGYPNAGKSSLLAAMTRAHP 26

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
           ++G   AGKS+LL  +T     
Sbjct: 5  GLVGYPNAGKSSLLAAMTRAHPK 27

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 9e-04
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 2/130 (1%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV 118
           A  G S AGKS+ LN LT  K+          G  + ++ F       + D   +    V
Sbjct: 20  AFAGRSNAGKSSALNTLTNQKSLARTSK--TPGRTQLINLFEVADGKRLVDLPGYGYAEV 77

Query: 119 EEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY 178
            E M       LG+ L K      +  L             +         +VL+ L   
Sbjct: 78  PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 137

Query: 179 NRIHEKTILK 188
           +++       
Sbjct: 138 DKLASGARKA 147

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 201 AIMGPSGAGKSTLLNILTGYK 221
           A  G S AGKS+ LN LT  K
Sbjct: 20  AFAGRSNAGKSSALNTLTNQK 40

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
            I+G    GKSTLLN L      
Sbjct: 4   VIVGKPNVGKSTLLNRLLNEDRA 26

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
           I+G    GKSTLLN L     +
Sbjct: 4  VIVGKPNVGKSTLLNRLLNEDRA 26

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 59 AIMGPSGAGKSTLLNILTGYKTS 81
           I G   AGKS+LLN L G + +
Sbjct: 5  VIAGRPNAGKSSLLNALAGREAA 27

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
            I G   AGKS+LLN L G + 
Sbjct: 5   VIAGRPNAGKSSLLNALAGREA 26

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 58 TAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGH 92
             +G +G+GK+TL      Y     + +  +N  
Sbjct: 3  VVFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLD 36

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
              G S  GKSTL+  LTG K+
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKV 25

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 59 AIMGPSGAGKSTLLNILTGYK 79
             G S  GKSTL+  LTG K
Sbjct: 4  IFAGRSNVGKSTLIYRLTGKK 24

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
           G +  + G  G+GKST+   L
Sbjct: 3  GGNILLLSGHPGSGKSTIAEAL 24

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
            G +  + G  G+GKST+   L
Sbjct: 3   GGNILLLSGHPGSGKSTIAEAL 24

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 55 GELTAIMGPSGAGKSTLLNIL 75
          G +  + GPS  GKST++  L
Sbjct: 2  GRVVVLSGPSAVGKSTVVRCL 22

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 197 GELTAIMGPSGAGKSTLLNIL 217
           G +  + GPS  GKST++  L
Sbjct: 2   GRVVVLSGPSAVGKSTVVRCL 22

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 201 AIMGPSGAGKSTLLNILTGYKIL 223
           A+ G S  GKS+ +N L   K L
Sbjct: 27  ALAGRSNVGKSSFINSLINRKNL 49

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 59 AIMGPSGAGKSTLLNILTGYKT 80
          A+ G S  GKS+ +N L   K 
Sbjct: 27 ALAGRSNVGKSSFINSLINRKN 48

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 16/94 (17%)

Query: 55  GELTAIMGPSGAGKSTLLNIL----------------TGYKTSGTEGSITINGHERNLSQ 98
           G L  +  PSGAGKS+L+  L                T     G            +  +
Sbjct: 2   GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 61

Query: 99  FRKLSCYIMQDNQLHANLTVEEAMNVATALKLGK 132
                   ++  ++  N        +   L  G 
Sbjct: 62  EMISRDAFLEHAEVFGNYYGTSREAIEQVLATGV 95

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 197 GELTAIMGPSGAGKSTLLNIL 217
           G L  +  PSGAGKS+L+  L
Sbjct: 2   GTLYIVSAPSGAGKSSLIQAL 22

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 59  AIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQD 109
           AI+G    GKSTL N +   + +             +   F     Y+  D
Sbjct: 12  AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 201 AIMGPSGAGKSTLLNILTGYKI 222
           AI+G    GKSTL N +   + 
Sbjct: 12  AIVGRPNVGKSTLFNAILNKER 33

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 54 SGELTAIMGPSGAGKSTLLNIL 75
          +  +  + G S AGKS ++  L
Sbjct: 2  TTRMIILNGGSSAGKSGIVRCL 23

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 196 SGELTAIMGPSGAGKSTLLNIL 217
           +  +  + G S AGKS ++  L
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCL 23

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.96
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.96
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.96
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.93
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.9
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.9
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.87
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.82
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.8
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.39
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.37
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.37
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.37
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.36
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.34
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.33
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.3
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.29
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.27
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.27
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.27
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.26
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.25
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.19
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.17
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.99
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.58
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.13
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.99
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.94
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.69
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.69
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.68
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.64
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.61
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.6
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.5
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.41
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.4
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.39
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.39
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.38
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.37
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.36
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.26
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.2
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.19
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.16
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.16
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.13
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.12
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.11
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.1
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.1
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.07
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.05
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.04
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.03
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.03
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.03
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.02
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.02
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.98
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.97
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.96
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.96
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.95
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.94
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.94
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.94
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.94
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.92
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.92
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.87
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.84
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.81
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.79
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.78
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.78
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.77
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.77
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.73
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.72
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.71
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.71
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.7
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.67
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.59
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.59
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.58
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.56
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.55
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.53
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.51
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.5
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.48
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.47
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.46
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.44
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.42
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.4
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.37
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.36
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.34
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.32
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.32
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.29
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.28
d1okkd2	207	GTPase domain of the signal recognition particle r	96.28
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.27
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.26
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.26
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.25
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.24
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.24
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.22
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.19
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.18
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.18
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.17
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.16
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.16
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.15
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.15
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.15
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.15
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.13
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.12
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.11
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.09
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.09
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.07
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.06
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.05
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.03
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.99
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.99
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.98
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.97
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.96
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	95.95
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.94
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.93
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.93
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.93
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.87
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.86
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.86
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.85
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.84
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.83
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.81
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.8
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.8
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.79
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.78
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.78
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.78
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.77
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.73
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.72
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.7
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.69
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.68
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.68
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.67
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.65
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.65
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.64
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.61
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.6
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.58
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.56
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.56
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.54
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.52
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.51
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.49
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.44
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.43
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.42
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.37
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.35
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.33
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.29
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.28
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.27
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.24
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.12
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.08
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.03
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.02
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.02
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.99
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.94
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.8
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.71
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.69
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.63
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.58
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.57
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.56
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.56
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.55
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.48
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.45
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.43
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.37
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.32
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.19
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.15
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.09
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.08
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.72
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.64
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.63
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.58
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.58
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.39
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.35
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.32
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.28
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.24
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.22
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.21
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.89
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.73
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.52
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.36
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.3
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.3
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.21
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.19
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.16
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.96
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.9
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.87
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.83
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.62
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.54
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.34
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.33
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.98
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.69
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.53
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.31
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.27
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.92
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.65
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.57
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.25
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.19
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.08
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.03
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.99
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.96
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	88.94
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	88.82
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.73
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.26
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.11
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.91
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.75
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.46
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	87.04
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.03
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.97
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.71
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.61
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.56
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	86.37
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	86.31
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.22
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.82
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	85.44
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.39
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.29
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.13
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.63
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.22
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.82
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.75
d1tuea_	205	Replication protein E1 helicase domain {Human papi	83.74
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.58
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.57
d1tuea_	205	Replication protein E1 helicase domain {Human papi	82.13
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.06
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	81.81
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.52

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=1.3e-29  Score=213.91  Aligned_cols=144  Identities=21%  Similarity=0.258  Sum_probs=120.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|++..+|++|||+|++||+++|+||||||||||+++|+|+ ..|++|+|.++|+++. ....++.+|||||++.
T Consensus        10 ~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl-~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   88 (239)
T d1v43a3          10 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA   88 (239)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCGGGGTEEEEEC---
T ss_pred             EEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC-CCCCCCEEEEcceecccCCcccceEEEEeechh
Confidence            5789999999999999999999999999999999999999999997 5689999999999864 2345678999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|++|++.+....   ...++...++.+.++++.+++.+.....+...|++++|++.+|+++...
T Consensus        89 l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~  154 (239)
T d1v43a3          89 VWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE  154 (239)
T ss_dssp             ---CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred             hcccchHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence            99999999999864322   2456677788889999999999988888899999999999999999876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6e-30  Score=215.23  Aligned_cols=144  Identities=22%  Similarity=0.251  Sum_probs=91.2

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|+.+.|++..+|++|||+|++||+++|+|||||||||||++|+|+ ..|++|+|.++|+++. ....++.+|||||++.
T Consensus         4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl-~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~   82 (232)
T d2awna2           4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA   82 (232)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEESSSCCTTSCGGGTCEEEECSSCC
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-CCCCCCEEEECCEECCCCchhhceeeeeccccc
Confidence            5789999999999999999999999999999999999999999997 6689999999998864 2344677999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +++.+|++|++.+.....   ...+...++++.++++.+++.+.....+...|++++|++.+|+++...
T Consensus        83 l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~  148 (232)
T d2awna2          83 LYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE  148 (232)
T ss_dssp             C------------------------CHHHHHHHHHHHHC---------------------CHHHHHHTC
T ss_pred             cccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999999998864432   234455567788899999998888888888999999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.96  E-value=3.1e-29  Score=211.85  Aligned_cols=167  Identities=18%  Similarity=0.195  Sum_probs=140.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc-------hhhhhhceE
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL-------SQFRKLSCY  105 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~-------~~~~~~~g~  105 (240)
                      +|+.+.||+..+|++|||+|++||+++|+||||||||||+++|+|+ ..|++|+|.++|.++..       ...++.+||
T Consensus         7 ~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl-~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~   85 (240)
T d1g2912           7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAM   85 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred             EeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC-CCCCCCEEEECCEEecccchhhhccccccccee
Confidence            5889999999999999999999999999999999999999999997 56899999999987532       123567999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccce
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKT  185 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (240)
                      |||++.+++.+|+.|++.+....+   ..+....++++.++++.+++.+....++...|++++|++.+|+++...     
T Consensus        86 v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~-----  157 (240)
T d1g2912          86 VFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK-----  157 (240)
T ss_dssp             ECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC-----
T ss_pred             cccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC-----
Confidence            999999999999999999876543   345667778899999999999888888888999999999999999876     


Q ss_pred             eeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGY  220 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~  220 (240)
                                  ..+.|+.++-+|     +..+.++|..+
T Consensus       158 ------------P~iLllDEPt~~LD~~~~~~i~~~l~~l  185 (240)
T d1g2912         158 ------------PQVFLMDEPLSNLDAKLRVRMRAELKKL  185 (240)
T ss_dssp             ------------CSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             ------------CCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence                        356667776664     55566666554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.96  E-value=4.8e-29  Score=210.71  Aligned_cols=144  Identities=23%  Similarity=0.267  Sum_probs=124.8

Q ss_pred             CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC------chhhhhhce
Q psy310           33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN------LSQFRKLSC  104 (240)
Q Consensus        33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~------~~~~~~~~g  104 (240)
                      +|+.+.|  +...+|++|||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.      ....++.+|
T Consensus         7 ~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl-~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig   85 (242)
T d1oxxk2           7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-DVPSTGELYFDDRLVASNGKLIVPPEDRKIG   85 (242)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-SCCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred             EeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC-cCCCCceEEECCEEeecCchhhcchhhccce
Confidence            5777777  667899999999999999999999999999999999997 6689999999998753      233466799


Q ss_pred             EEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          105 YIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       105 ~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ||||++.+++.+|++|++.+....   ...++...++++.++++.+++.+....++...|++++|++.+|+++...
T Consensus        86 ~vfQ~~~L~p~ltv~eni~~~l~~---~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~  158 (242)
T d1oxxk2          86 MVFQTWALYPNLTAFENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (242)
T ss_dssp             EEETTSCCCTTSCHHHHHHGGGTT---SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             EEeccccccccccHHHHhhhhhHh---hcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence            999999999999999999875322   2456677788899999999999888888888999999999999999875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.95  E-value=3.9e-28  Score=203.62  Aligned_cols=163  Identities=20%  Similarity=0.256  Sum_probs=132.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQ  111 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~  111 (240)
                      +|++++|+. .+|++|||+|++||+++|+||||||||||+++|+|+ ..|++|+|.++|.++. ....++.+|||||++.
T Consensus         5 ~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl-~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~   82 (229)
T d3d31a2           5 ESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS   82 (229)
T ss_dssp             EEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-SCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred             EEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-cCCCCCEEEEccEeccccchhHhcceeeccccc
Confidence            578899987 589999999999999999999999999999999997 6689999999999874 2345678999999999


Q ss_pred             ccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcccccceeeccce
Q psy310          112 LHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNRIHEKTILKSVS  191 (240)
Q Consensus       112 ~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs  191 (240)
                      +++.+||.|++.+........  .    ++.+.++++.+++.+..+......|++++|++.+|+++...           
T Consensus        83 l~~~~tV~enl~~~~~~~~~~--~----~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~-----------  145 (229)
T d3d31a2          83 LFPHMNVKKNLEFGMRMKKIK--D----PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN-----------  145 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHHCCC--C----HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC-----------
T ss_pred             cCccccHHHHHHHHHhhcccc--H----HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhcc-----------
Confidence            999999999999876554221  1    23466677778888888888888999999999999999876           


Q ss_pred             eEEeCCcEEEEEcCCCCC-----HHHHHHHHhCC
Q psy310          192 GRLRSGELTAIMGPSGAG-----KSTLLNILTGY  220 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsG-----KSTLlk~l~G~  220 (240)
                            .++.|+.++-||     +-.+.++|..+
T Consensus       146 ------P~iLllDEPts~LD~~~~~~i~~~l~~l  173 (229)
T d3d31a2         146 ------PKILLLDEPLSALDPRTQENAREMLSVL  173 (229)
T ss_dssp             ------CSEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             ------CCceeecCCCcCCCHHHHHHHHHHHHHH
Confidence                  356666666664     55566666554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-28  Score=207.59  Aligned_cols=144  Identities=25%  Similarity=0.288  Sum_probs=121.9

Q ss_pred             CCceecCCCc----eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc------hhhhhh
Q psy310           33 TNNNCEPNEK----TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL------SQFRKL  102 (240)
Q Consensus        33 ~~~~~~~~~~----~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~------~~~~~~  102 (240)
                      +|+++.|+..    .+|+||||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++..      ..+++.
T Consensus         5 ~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl-~~p~sG~I~~~g~~i~~~~~~~~~~~rr~   83 (240)
T d3dhwc1           5 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERPTEGSVLVDGQELTTLSESELTKARRQ   83 (240)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS-SCCSEEEEEETTEEECTTCHHHHHHHHHH
T ss_pred             EeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC-ccccCCceEEcCeEeeeCChhhhhhhhcc
Confidence            4566666543    689999999999999999999999999999999997 66899999999988631      234567


Q ss_pred             ceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          103 SCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       103 ~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      +|||||++.+++.+|+.|++.+.....   ...+...++.+.++++.+++.+....++...|++++|++.+|+++...
T Consensus        84 ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~  158 (240)
T d3dhwc1          84 IGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN  158 (240)
T ss_dssp             EEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTC
T ss_pred             ccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccC
Confidence            999999999999999999999875432   234455677788899999998888888888999999999999999875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=5.7e-28  Score=202.90  Aligned_cols=147  Identities=25%  Similarity=0.302  Sum_probs=120.2

Q ss_pred             CCceecCCC----ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---h---hh-hh
Q psy310           33 TNNNCEPNE----KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---S---QF-RK  101 (240)
Q Consensus        33 ~~~~~~~~~----~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~---~~-~~  101 (240)
                      +|+++.|+.    ..+|++|||+|++||+++|+|||||||||||++|+|+ ..|++|+|.++|.++..   .   .+ ++
T Consensus         5 ~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl-~~p~sG~I~~~g~~i~~~~~~~~~~~r~~   83 (230)
T d1l2ta_           5 KNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-DKPTEGEVYIDNIKTNDLDDDELTKIRRD   83 (230)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC-CCCCcceeEECCEEcCcCChhhcchhhcc
Confidence            466666653    2489999999999999999999999999999999997 66899999999988642   1   12 35


Q ss_pred             hceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHHHHhcc
Q psy310          102 LSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       102 ~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+|||||++.+++.+|+.|++.+..............+.+.+.++++.+++.+. ...++...|++++|++.+|+++...
T Consensus        84 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~  163 (230)
T d1l2ta_          84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN  163 (230)
T ss_dssp             HEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcC
Confidence            699999999999999999999987655433345566667778888888888663 5666777899999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3e-27  Score=199.72  Aligned_cols=144  Identities=21%  Similarity=0.269  Sum_probs=124.9

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC--chhhhhhceEEcccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN--LSQFRKLSCYIMQDN  110 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~--~~~~~~~~g~v~Q~~  110 (240)
                      +|+++.|+++++|+++||+|++||++||+||||||||||+++|+|+ ..|++|+|.++|.+..  ....++.++|+||++
T Consensus         6 ~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~-~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~   84 (238)
T d1vpla_           6 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEA   84 (238)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTCHHHHHTTEEEECTTC
T ss_pred             EeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECcEecccChHHHHhhEeEeeecc
Confidence            6899999999999999999999999999999999999999999998 5689999999998763  234568899999999


Q ss_pred             cccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          111 QLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       111 ~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      .+++.+++.|++.+...+.   ........+.++.+++.+++.+.....+...|++++|++.++++++..
T Consensus        85 ~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~  151 (238)
T d1vpla_          85 GAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  151 (238)
T ss_dssp             CCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            9999999999998866554   234455667778888888888887778888899999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=3.9e-27  Score=201.19  Aligned_cols=145  Identities=26%  Similarity=0.314  Sum_probs=122.3

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc----------------
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL----------------   96 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~----------------   96 (240)
                      +|+.+.||+..+|++|||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.++..                
T Consensus         6 ~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl-~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~   84 (258)
T d1b0ua_           6 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL   84 (258)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEECCEEECTTSSEEESCHHHH
T ss_pred             EEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC-ccCCCCCEEECCEEeccCCccchhcccccHhHH
Confidence            6889999999999999999999999999999999999999999997 66899999999987631                


Q ss_pred             hhhhhhceEEcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchh-hhhccCCCCCchhhHHHHHH
Q psy310           97 SQFRKLSCYIMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHA-QRCFLSGPWGTFESSVLLAL  175 (240)
Q Consensus        97 ~~~~~~~g~v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  175 (240)
                      ...++.+|||||++.+++.+++.+++.+......  ........+.+.++++.+++.+. ...++...|++++|++.+|+
T Consensus        85 ~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAr  162 (258)
T d1b0ua_          85 RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR  162 (258)
T ss_dssp             HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred             HHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHH
Confidence            2345779999999999999999999887643322  34556667778888899888764 45566778999999999999


Q ss_pred             HHhcc
Q psy310          176 AMYNR  180 (240)
Q Consensus       176 ~~~~~  180 (240)
                      ++...
T Consensus       163 aL~~~  167 (258)
T d1b0ua_         163 ALAME  167 (258)
T ss_dssp             HHHTC
T ss_pred             HHhcC
Confidence            99875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=7.3e-27  Score=199.19  Aligned_cols=173  Identities=20%  Similarity=0.183  Sum_probs=135.8

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hh-hhhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQ-FRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~-~~~~~g~v~Q  108 (240)
                      +|+++.|++.++|++|||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.++..   .. .+..++|+||
T Consensus         8 ~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl-~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q   86 (254)
T d1g6ha_           8 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-LKADEGRVYFENKDITNKEPAELYHYGIVRTFQ   86 (254)
T ss_dssp             EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred             EEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC-CcCCCcEEEECCEeccchhHHHHHHhcCCccCC
Confidence            5789999999999999999999999999999999999999999997 66899999999998742   22 2334899999


Q ss_pred             cccccccccHHHHHHHHHHH----------hcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          109 DNQLHANLTVEEAMNVATAL----------KLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~----------~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      ++.+++.+|+.|++.+....          .......+....+.+.++++.+++.+.........|++++|++.+++++.
T Consensus        87 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~  166 (254)
T d1g6ha_          87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM  166 (254)
T ss_dssp             CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHH
Confidence            99999999999999764211          11111223344556777888888888777778888999999999999998


Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCC-----HHHHHHHHhCCccc
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAG-----KSTLLNILTGYKIL  223 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsG-----KSTLlk~l~G~~~~  223 (240)
                      ..                 ..+.|+.++-+|     +..++++|..++..
T Consensus       167 ~~-----------------P~llilDEPt~gLD~~~~~~i~~~i~~l~~~  199 (254)
T d1g6ha_         167 TN-----------------PKMIVMDEPIAGVAPGLAHDIFNHVLELKAK  199 (254)
T ss_dssp             TC-----------------CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hC-----------------cCchhhcCCcccCCHHHHHHHHHHHHHHHHC
Confidence            75                 356677777664     56677777665433

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.93  E-value=3.1e-26  Score=193.73  Aligned_cols=143  Identities=17%  Similarity=0.241  Sum_probs=112.1

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCch---hh-hhhceEEcc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLS---QF-RKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~---~~-~~~~g~v~Q  108 (240)
                      +|+.+.||+..+|++|||+|++||++||+||||||||||+++|+|+ .+|++|+|.++|.++...   .. +..++|++|
T Consensus        10 ~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl-~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q   88 (240)
T d1ji0a_          10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-VRAQKGKIIFNGQDITNKPAHVINRMGIALVPE   88 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEECTTCCHHHHHHTTEEEECS
T ss_pred             eeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEecccccccccHHHHHHhcccccCc
Confidence            5889999999999999999999999999999999999999999997 568999999999986421   11 234789999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC-CcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS-DTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++.+|+.|++.+......    .....++.++.++..+ ++.+.........|++++|++.+++++...
T Consensus        89 ~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~  157 (240)
T d1ji0a_          89 GRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR  157 (240)
T ss_dssp             SCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred             ccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            9999999999999875432221    1122233333344333 455666667778899999999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=7.1e-26  Score=190.79  Aligned_cols=138  Identities=21%  Similarity=0.303  Sum_probs=118.4

Q ss_pred             CceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC-chhhhhhceEEcccccc
Q psy310           34 NNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN-LSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        34 ~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~-~~~~~~~~g~v~Q~~~~  112 (240)
                      ++++.+|+..+  ||||++. +|+++|+||||||||||+++|+|+ .+|++|+|.++|.++. ....++.+|||||++.+
T Consensus         6 ~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl-~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l   81 (240)
T d2onka1           6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGI-VKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL   81 (240)
T ss_dssp             EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC
T ss_pred             EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcC-CCCCceEEEECCEECCcCCHHHcCceeeccchhh
Confidence            56788888765  7999995 699999999999999999999997 6689999999998874 23446789999999999


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+||+|++.++.     ....+...++.+.++++.+++.+.....+...|++++|++.+|++++..
T Consensus        82 ~~~ltV~enl~~~l-----~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~  144 (240)
T d2onka1          82 FPHLSVYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ  144 (240)
T ss_dssp             CTTSCHHHHHHTTC-----TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             cccchhhHhhhhhh-----cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhcc
Confidence            99999999998642     1335556677889999999999988888889999999999999999876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=3.8e-24  Score=180.95  Aligned_cols=142  Identities=25%  Similarity=0.349  Sum_probs=103.0

Q ss_pred             CCceecCCC-ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEcc
Q psy310           33 TNNNCEPNE-KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIMQ  108 (240)
Q Consensus        33 ~~~~~~~~~-~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~Q  108 (240)
                      +|+++.|++ +++|++|||+|++||++||+||||||||||+++|+|+ ..|.+|+|.++|.++.   ...+++.++||+|
T Consensus         5 knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q   83 (242)
T d1mv5a_           5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-YQPTAGEITIDGQPIDNISLENWRSQIGFVSQ   83 (242)
T ss_dssp             EEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-SCCSBSCEEETTEESTTTSCSCCTTTCCEECC
T ss_pred             EEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh-hCCCCCEEEECCEEeccccHHHHHhheEEEcc
Confidence            688888854 6799999999999999999999999999999999998 5578999999998763   3456788999999


Q ss_pred             cccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcC---Ccchhhhhc----cCCCCCchhhHHHHHHHHhcc
Q psy310          109 DNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRS---DTNHAQRCF----LSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       109 ~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++.+++. |++|++.+..    ..........+..+......   .........    ....|++++|++.+|++++..
T Consensus        84 ~~~lf~~-ti~eNi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~  157 (242)
T d1mv5a_          84 DSAIMAG-TIRENLTYGL----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (242)
T ss_dssp             SSCCCCE-EHHHHTTSCT----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             ccccCCc-chhhheeccc----ccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9988765 9999876421    11222333233333221111   111111111    234688999999999999875

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.90  E-value=5.5e-24  Score=175.20  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=106.4

Q ss_pred             CCceecCCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           33 TNNNCEPNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        33 ~~~~~~~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      +|+.+.|+ +++|+++||+|++||+++|+||||||||||+++|+|+ .+|++|+|.++|.++.  ..+..++|++|+..+
T Consensus         6 ~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl-~~p~~G~I~~~g~~i~--~~~~~i~~~~~~~~~   81 (200)
T d1sgwa_           6 RDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNGVPIT--KVKGKIFFLPEEIIV   81 (200)
T ss_dssp             EEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGG--GGGGGEEEECSSCCC
T ss_pred             EEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc-cccCCCEEEECCEehh--HhcCcEEEEeecccC
Confidence            57788885 6899999999999999999999999999999999997 5689999999998763  456789999999998


Q ss_pred             cccccHHHHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          113 HANLTVEEAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       113 ~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ...+++++++.+....... ...+..    +...++.+++.+.. ..+...|++++|++.+++++...
T Consensus        82 ~~~~t~~~~l~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~ia~al~~~  143 (200)
T d1sgwa_          82 PRKISVEDYLKAVASLYGV-KVNKNE----IMDALESVEVLDLK-KKLGELSQGTIRRVQLASTLLVN  143 (200)
T ss_dssp             CTTSBHHHHHHHHHHHTTC-CCCHHH----HHHHHHHTTCCCTT-SBGGGSCHHHHHHHHHHHHTTSC
T ss_pred             CCCcCHHHHHHHHHHhcCC-ccCHHH----HHHHHHHcCCcccc-cccCcCCCcHHHHHHHHHHHhcC
Confidence            8999999998876554322 223322    22233333332222 23445788999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2e-24  Score=182.53  Aligned_cols=141  Identities=22%  Similarity=0.305  Sum_probs=102.2

Q ss_pred             CCceecC--CCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceEEc
Q psy310           33 TNNNCEP--NEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCYIM  107 (240)
Q Consensus        33 ~~~~~~~--~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~v~  107 (240)
                      +|+++.|  +.+++|++|||+|++||++||+||||||||||+++|+|+ .+|.+|+|.++|.++.   ...+++.++||+
T Consensus         5 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~   83 (241)
T d2pmka1           5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-YIPENGQVLIDGHDLALADPNWLRRQVGVVL   83 (241)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred             EEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc-CCCCCCEEEECCEEecccchhhhhceEEEEe
Confidence            5677777  557799999999999999999999999999999999998 5578999999998763   356788999999


Q ss_pred             ccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcCC--cchhhhhccCCCCCchhhHHHHHHHHhcc
Q psy310          108 QDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRSD--TNHAQRCFLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       108 Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      |++.++ ..|++||+.+..     ............+..     +..+.  ............|++++|++.+|++++..
T Consensus        84 Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~  157 (241)
T d2pmka1          84 QDNVLL-NRSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  157 (241)
T ss_dssp             SSCCCT-TSBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             cccccC-CccccccccccC-----ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence            999876 569999987531     112222222222211     11111  11111122345778999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-24  Score=182.65  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=102.6

Q ss_pred             CCCceecCCCc---eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           32 NTNNNCEPNEK---TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        32 ~~~~~~~~~~~---~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      -+|+++.|+++   .+|++|||+|++||++|||||||||||||+++|+|+ ..|.+|+|.++|.++.   ...+++.++|
T Consensus        14 ~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   92 (251)
T d1jj7a_          14 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL-YQPTGGQLLLDGKPLPQYEHRYLHRQVAA   92 (251)
T ss_dssp             EEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETTEEGGGBCHHHHHHHEEE
T ss_pred             EEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc-cCCCcCEEEECCEecchhhhHHHHHHhhh
Confidence            35788888653   599999999999999999999999999999999998 5578999999998763   3557789999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHH-----HHhhhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVV-----RTLFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~-----~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++. .|+++++.+..    .............     ...+..+  +............|++++|++.+|++++
T Consensus        93 v~Q~~~lf~-~tv~eni~~g~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          93 VGQEPQVFG-RSLQENIAYGL----TQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             ECSSCCCCS-SBHHHHHHCSC----SSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             ccccccccC-cchhhhhhhhh----cccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            999998874 69999987531    1111111111111     1112221  1111222233457889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       168 ~~  169 (251)
T d1jj7a_         168 RK  169 (251)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=1.2e-23  Score=179.03  Aligned_cols=141  Identities=24%  Similarity=0.276  Sum_probs=101.1

Q ss_pred             CCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccC---CchhhhhhceEE
Q psy310           32 NTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHER---NLSQFRKLSCYI  106 (240)
Q Consensus        32 ~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~---~~~~~~~~~g~v  106 (240)
                      -+|+.+.|++  .++|++|||+|++||++||+||||||||||+++|+|+ ..|.+|+|.++|.++   ....+++.++||
T Consensus        19 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v   97 (255)
T d2hyda1          19 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-YDVTSGQILIDGHNIKDFLTGSLRNQIGLV   97 (255)
T ss_dssp             EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-SCCSEEEEEETTEEGGGSCHHHHHHTEEEE
T ss_pred             EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc-CCccccccccCCEEcccCCHHHhhheeeee
Confidence            4578888855  5799999999999999999999999999999999998 557899999999876   345678899999


Q ss_pred             cccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHHh-----hhcC--CcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          107 MQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRTL-----FYRS--DTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       107 ~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +|++.++ ..|++||+.+..     .........+.++..     +..+  ++...........|++++|++.+|++++.
T Consensus        98 ~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          98 QQDNILF-SDTVKENILLGR-----PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             CSSCCCC-SSBHHHHHGGGC-----SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             eccccCC-CCCHHHHHhccC-----cCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            9999877 469999997531     112222222222211     1110  01111111223467889999999998876

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=6.2e-22  Score=168.28  Aligned_cols=144  Identities=19%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             cCCCceecCCC--ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCC---chhhhhhceE
Q psy310           31 TNTNNNCEPNE--KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERN---LSQFRKLSCY  105 (240)
Q Consensus        31 ~~~~~~~~~~~--~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~---~~~~~~~~g~  105 (240)
                      .-+|+++.|++  .++|++|||+|++||++|||||||||||||+++|+|+ ..|.+|+|.++|.+..   ...+++.++|
T Consensus        15 ~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   93 (253)
T d3b60a1          15 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-YDIDEGHILMDGHDLREYTLASLRNQVAL   93 (253)
T ss_dssp             EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-TCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc-cCCCccEEEECCcccchhhhhhhhheEEE
Confidence            44678888864  4699999999999999999999999999999999998 5578999999998763   4567788999


Q ss_pred             EcccccccccccHHHHHHHHHHHhcCCCccHHHHHHHHHH-----hhhcC--CcchhhhhccCCCCCchhhHHHHHHHHh
Q psy310          106 IMQDNQLHANLTVEEAMNVATALKLGKDLTKAARKDVVRT-----LFYRS--DTNHAQRCFLSGPWGTFESSVLLALAMY  178 (240)
Q Consensus       106 v~Q~~~~~~~ltv~e~l~~~~~~~~~~~l~~~~~~~~~~~-----l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (240)
                      |+|++.++. .++.+++.+..    ..........+.++.     ++..+  ++...........|++++|++.+|++++
T Consensus        94 v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1          94 VSQNVHLFN-DTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             ECSSCCCCS-SBHHHHHHTTT----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             EeeccccCC-cchhhhhhhcC----cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence            999998764 57888776431    112233222222211     11111  1111111223457889999999999998


Q ss_pred             cc
Q psy310          179 NR  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       169 ~~  170 (253)
T d3b60a1         169 RD  170 (253)
T ss_dssp             HC
T ss_pred             cC
Confidence            75

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.3e-20  Score=159.70  Aligned_cols=124  Identities=23%  Similarity=0.276  Sum_probs=89.5

Q ss_pred             CCCceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccH
Q psy310           39 PNEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTV  118 (240)
Q Consensus        39 ~~~~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv  118 (240)
                      +.++++|+||||+|++||++||+||||||||||+++|+|+ ..|.+|.|.++|          .++|++|++.+++ .|+
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl-~~p~~G~I~~~g----------~i~~v~Q~~~l~~-~tv  113 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEASEGIIKHSG----------RVSFCSQFSWIMP-GTI  113 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-SCCSEEEEECCS----------CEEEECSSCCCCS-EEH
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-CcCCCcEEEECC----------EEEEEeccccccC-cee
Confidence            4678999999999999999999999999999999999998 557899999987          3799999998875 599


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHhhh---cCCcchhhhh----ccCCCCCchhhHHHHHHHHhcc
Q psy310          119 EEAMNVATALKLGKDLTKAARKDVVRTLFY---RSDTNHAQRC----FLSGPWGTFESSVLLALAMYNR  180 (240)
Q Consensus       119 ~e~l~~~~~~~~~~~l~~~~~~~~~~~l~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  180 (240)
                      ++++.+..      ..........++....   ...+.+....    .....|++++|++.+|++++..
T Consensus       114 ~eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~  176 (281)
T d1r0wa_         114 KENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD  176 (281)
T ss_dssp             HHHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             eccccccc------cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhC
Confidence            99886431      1122222222222211   1111111111    1234688999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.4e-20  Score=154.75  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=98.1

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCc---hhhhhhceEEcccccccccccHH
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNL---SQFRKLSCYIMQDNQLHANLTVE  119 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~---~~~~~~~g~v~Q~~~~~~~ltv~  119 (240)
                      .+|++|||+|++||++||+||||||||||+++|+|+ . +.+|+|.++|.++..   ...+...+|++|+.......+++
T Consensus        13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~   90 (231)
T d1l7vc_          13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW   90 (231)
T ss_dssp             TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred             ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence            369999999999999999999999999999999997 4 468999999987632   33455678999987766677888


Q ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHhhhcCCcchhhhhccCCCCCchhhHHHHHHHHhc
Q psy310          120 EAMNVATALKLGKDLTKAARKDVVRTLFYRSDTNHAQRCFLSGPWGTFESSVLLALAMYN  179 (240)
Q Consensus       120 e~l~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (240)
                      +.+.+.    ....    ...+.+.++...+++.+.........|++++|++.+++++.+
T Consensus        91 ~~~~~~----~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~  142 (231)
T d1l7vc_          91 HYLTLH----QHDK----TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (231)
T ss_dssp             HHHHHH----CSCT----TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHhhhc----cchh----hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHh
Confidence            776642    1111    123445556666677666666677789999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=9.8e-14  Score=115.48  Aligned_cols=51  Identities=33%  Similarity=0.609  Sum_probs=44.4

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhhcc
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWLLE  230 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~~~  230 (240)
                      .|++..+|+++||+|++||++||+||||||||||+++|+|+.+|.  ++++..
T Consensus         9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g   61 (232)
T d2awna2           9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE   61 (232)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESS
T ss_pred             EECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECC
Confidence            467788999999999999999999999999999999999995544  665533

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.37  E-value=1.5e-13  Score=115.01  Aligned_cols=50  Identities=20%  Similarity=0.390  Sum_probs=43.5

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ..|++..+|++|||+|++||++||+||||||||||+++|+|+..|  +++.+
T Consensus        14 k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~   65 (240)
T d1ji0a_          14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF   65 (240)
T ss_dssp             EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEe
Confidence            346778899999999999999999999999999999999999655  35533

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=1.5e-13  Score=114.91  Aligned_cols=50  Identities=36%  Similarity=0.561  Sum_probs=43.9

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      .+|+++.+|+++||+|++||++||+|+||||||||+++|+|+..|.  ++.+
T Consensus        10 k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i   61 (238)
T d1vpla_          10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV   61 (238)
T ss_dssp             EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence            4577889999999999999999999999999999999999995553  5533

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.37  E-value=1.4e-13  Score=112.22  Aligned_cols=42  Identities=29%  Similarity=0.574  Sum_probs=38.7

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ++.+|+++||+|++||++||+|+||||||||+++|+|+.+|.
T Consensus        13 ~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~   54 (200)
T d1sgwa_          13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL   54 (200)
T ss_dssp             SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC
Confidence            567999999999999999999999999999999999985544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=1.7e-13  Score=114.39  Aligned_cols=50  Identities=26%  Similarity=0.581  Sum_probs=44.0

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      ..|++..+|++|||+|++||+++|+||||||||||+|+|+|+.+|.  ++++
T Consensus        14 k~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i   65 (239)
T d1v43a3          14 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF   65 (239)
T ss_dssp             EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEE
Confidence            3567889999999999999999999999999999999999996554  5544

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.35  E-value=2e-13  Score=115.17  Aligned_cols=50  Identities=36%  Similarity=0.641  Sum_probs=44.0

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .+|++..+|++|||+|++||++||+|+||||||||+++|+|+..|  +++++
T Consensus        12 k~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~   63 (254)
T d1g6ha_          12 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF   63 (254)
T ss_dssp             EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEE
Confidence            356788899999999999999999999999999999999999655  45544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.34  E-value=2.4e-13  Score=113.65  Aligned_cols=50  Identities=30%  Similarity=0.589  Sum_probs=43.9

Q ss_pred             cccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          179 NRIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       179 ~~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      ..|++..+++++||+|++||+++|+||||||||||+|+|+|+..|  +++++
T Consensus        11 k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~   62 (240)
T d1g2912          11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI   62 (240)
T ss_dssp             EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEE
Confidence            346778899999999999999999999999999999999999554  46655

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.33  E-value=3.3e-13  Score=114.08  Aligned_cols=49  Identities=33%  Similarity=0.487  Sum_probs=43.4

Q ss_pred             ccccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          180 RIHEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       180 ~~~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .|++..+|++|||+|++||++||+|+||||||||+++|+|+..|  +++++
T Consensus        11 ~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~   61 (258)
T d1b0ua_          11 RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV   61 (258)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEE
Confidence            46778899999999999999999999999999999999999654  45644

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=6.8e-13  Score=110.22  Aligned_cols=44  Identities=41%  Similarity=0.692  Sum_probs=39.7

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      .+|+++||+|++||++||+|+||||||||+++|+|+..|  +++|+
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~   64 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI   64 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEE
Confidence            489999999999999999999999999999999999555  46665

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.29  E-value=6.2e-13  Score=111.34  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=39.3

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      +.+.+|++|||+|++||++||+|+||||||||+++|+|+..|.
T Consensus        13 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~   55 (242)
T d1mv5a_          13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT   55 (242)
T ss_dssp             SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            3457999999999999999999999999999999999996654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=6.9e-13  Score=113.39  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=39.8

Q ss_pred             ccceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          182 HEKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       182 ~~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      .+++||+++||+|++||++||+|+||||||||+++|+|+..|.
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~   89 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS   89 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC
Confidence            4678999999999999999999999999999999999996554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.1e-12  Score=109.63  Aligned_cols=44  Identities=30%  Similarity=0.455  Sum_probs=39.3

Q ss_pred             eeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          185 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       185 ~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      .+|++|||+|++||++||+|+||||||||+++|+|+..|.  ++++
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~   64 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV   64 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEE
Confidence            5899999999999999999999999999999999996554  4443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.3e-12  Score=109.25  Aligned_cols=42  Identities=33%  Similarity=0.595  Sum_probs=38.7

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      .+.+|+++||+|++||++||+|+||||||||+++|+|+..|.
T Consensus        15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~   56 (241)
T d2pmka1          15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE   56 (241)
T ss_dssp             SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            457999999999999999999999999999999999996553

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=110.35  Aligned_cols=46  Identities=39%  Similarity=0.619  Sum_probs=40.5

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      ++.+|+++||+|++||++||+|+||||||||+++|+|+..|.  +|++
T Consensus        26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i   73 (251)
T d1jj7a_          26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL   73 (251)
T ss_dssp             TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEE
Confidence            346999999999999999999999999999999999996664  5543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.26  E-value=9.5e-13  Score=109.17  Aligned_cols=45  Identities=33%  Similarity=0.682  Sum_probs=40.1

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      ..+|++|||+|++||++||+||||||||||+++|+|+..|.  ++++
T Consensus        13 ~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~   59 (229)
T d3d31a2          13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL   59 (229)
T ss_dssp             SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEE
Confidence            35899999999999999999999999999999999995554  6654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.25  E-value=8.9e-13  Score=110.17  Aligned_cols=46  Identities=35%  Similarity=0.665  Sum_probs=40.7

Q ss_pred             cceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCccc--chhhh
Q psy310          183 EKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKIL--RQLWL  228 (240)
Q Consensus       183 ~~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~--~~~~~  228 (240)
                      +..+|++|||+|++||+++|+|+||||||||+++|+|+..|  +++++
T Consensus        17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~   64 (242)
T d1oxxk2          17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF   64 (242)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEE
Confidence            46799999999999999999999999999999999999544  46654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=2.4e-12  Score=108.43  Aligned_cols=41  Identities=27%  Similarity=0.531  Sum_probs=38.0

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      ..+|+++||+|++||++||||+||||||||+++|+|+..|.
T Consensus        28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~   68 (253)
T d3b60a1          28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID   68 (253)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred             CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC
Confidence            46999999999999999999999999999999999996653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.9e-12  Score=105.71  Aligned_cols=39  Identities=46%  Similarity=0.764  Sum_probs=36.2

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      ..+|+++||+|++||++||+|+||||||||+++|+|+..
T Consensus        12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            457999999999999999999999999999999999843

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.17  E-value=4.1e-12  Score=106.99  Aligned_cols=41  Identities=37%  Similarity=0.587  Sum_probs=38.3

Q ss_pred             ceeeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc
Q psy310          184 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR  224 (240)
Q Consensus       184 ~~il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~  224 (240)
                      +.+|+++||+|++||++||+|+||||||||+++|+|+..|.
T Consensus        31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~   71 (255)
T d2hyda1          31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT   71 (255)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc
Confidence            56999999999999999999999999999999999996654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.99  E-value=1.4e-10  Score=96.49  Aligned_cols=39  Identities=28%  Similarity=0.547  Sum_probs=33.9

Q ss_pred             cceeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccc--hhhh
Q psy310          189 SVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKILR--QLWL  228 (240)
Q Consensus       189 ~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~--~~~~  228 (240)
                      |+||++. +|+++|+||||||||||+|+|+|+..|.  ++|+
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~   57 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL   57 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence            7999995 6899999999999999999999996554  6655

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.58  E-value=5.3e-09  Score=81.19  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCcc
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHE   93 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~   93 (240)
                      +++|+||||||||||+++|+|. .++..|.+.+.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~-l~~~~g~~~~~~~~   37 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVER-LGKRAIGFWTEEVR   37 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH-HGGGEEEEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHhc-CCCCcceEEECCcc
Confidence            5899999999999999999997 44667888876644

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2.3e-07  Score=71.83  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=27.5

Q ss_pred             eeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           45 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        45 L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++.+|++.+| ++.|+|||||||||+|.+|.-
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            56777888765 889999999999999999964

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.72  E-value=8.8e-06  Score=61.86  Aligned_cols=25  Identities=32%  Similarity=0.593  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+++.|.|++||||||+.+.|+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999975

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=8.2e-06  Score=61.67  Aligned_cols=21  Identities=48%  Similarity=0.518  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|++|||||||++.|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=9.3e-06  Score=63.13  Aligned_cols=24  Identities=38%  Similarity=0.637  Sum_probs=22.3

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |.++.|+||+|||||||++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=4.8e-07  Score=69.96  Aligned_cols=32  Identities=28%  Similarity=0.282  Sum_probs=27.3

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -+.+.++.+.+| +++|+|+|||||||++.+|.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            456677777776 89999999999999999996

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.68  E-value=9e-06  Score=61.69  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+|-+|.|+|++||||||+.++|+-.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=1.5e-05  Score=60.50  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+|+|+.|||||||++.|+..
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999985

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.4e-05  Score=60.62  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++.++.|+|++||||||+.+.|+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999985

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.50  E-value=2.7e-05  Score=58.99  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++|-.+.|.|++||||||+.+.|+-.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.46  E-value=3.4e-05  Score=58.24  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      ..+|.|.|++||||||+.+.|+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999863

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=2.8e-05  Score=57.68  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|+||+||||||+.+.|+-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=2.9e-05  Score=59.92  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|||-|++|||||||++.|.-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=2.4e-05  Score=60.37  Aligned_cols=25  Identities=40%  Similarity=0.502  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|-++.|+|++||||||+.+.|+-.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999999863

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3e-05  Score=58.69  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      .|.|.||+|+|||||++.++..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            58999999999999999999853

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.1e-05  Score=61.12  Aligned_cols=25  Identities=44%  Similarity=0.652  Sum_probs=22.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|.++.|+||||||||||++.|.-.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999888753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=3.2e-05  Score=64.28  Aligned_cols=21  Identities=43%  Similarity=0.849  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.+|||||||||||+|++|.-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            889999999999999999954

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.39  E-value=4.1e-05  Score=58.27  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|++|||||||+..|...
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999877653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.39  E-value=3.7e-05  Score=57.14  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      .++.|.|++|||||||++.|... .   .|.+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~-~---~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK-N---PGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH-S---TTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh-C---CCCEEech
Confidence            36889999999999999987542 1   25555554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4.6e-05  Score=65.65  Aligned_cols=28  Identities=29%  Similarity=0.679  Sum_probs=23.4

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      .+++.++.+.+|+|||||||||+|.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3455556699999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.38  E-value=3.7e-05  Score=57.97  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|+|++||||||+++.|+-.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=5.7e-05  Score=61.27  Aligned_cols=25  Identities=40%  Similarity=0.667  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|...+++|+||+|||||++.|.+.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            5889999999999999999999885

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=4.4e-05  Score=63.45  Aligned_cols=20  Identities=45%  Similarity=0.958  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q psy310          199 LTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~  218 (240)
                      ..+|+|+|||||||++++|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            89999999999999999983

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.35  E-value=4.6e-05  Score=57.15  Aligned_cols=22  Identities=45%  Similarity=0.609  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|.||+||||||+++.|+..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999975

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.26  E-value=7.4e-05  Score=56.67  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+++|.|+.||||||+++.|+-.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=7.1e-05  Score=58.27  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|+|+.|||||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999985

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0001  Score=63.33  Aligned_cols=27  Identities=30%  Similarity=0.703  Sum_probs=21.8

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      +.+..+...+|+|+|||||||++.+|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            334434489999999999999999984

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.16  E-value=0.00011  Score=56.88  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=23.2

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++|-++.|+||.||||||..+.|+-.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999999953

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.16  E-value=9.4e-05  Score=57.52  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q psy310          199 LTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +|||+|+.|+|||||++.|+|.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            69999999999999999999964

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0001  Score=58.15  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|||-|++|||||||.+.|+-.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00015  Score=55.73  Aligned_cols=27  Identities=22%  Similarity=0.462  Sum_probs=24.4

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -|.+|+++.|.||+|||||||+..++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            378999999999999999999987765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.12  E-value=9.8e-05  Score=57.37  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+|.|+||.||||||+.+.|+-.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00011  Score=57.21  Aligned_cols=21  Identities=57%  Similarity=0.738  Sum_probs=19.0

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|+||+|||||||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=6e-05  Score=61.34  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|....++|+||+|||||++.|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            5888999999999999999999984

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=0.00012  Score=56.30  Aligned_cols=21  Identities=43%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      +|||.|+.|||||||.+.|.-
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=8.5e-05  Score=56.31  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|||++|||||||++.|.+-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999884

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.07  E-value=0.00013  Score=58.14  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00015  Score=55.16  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+|+|+.|+|||||++.|.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.05  E-value=0.00013  Score=55.35  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|+|++||||||+.++|+..
T Consensus         3 I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=7.6e-05  Score=57.43  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +|=+|.|+|.+||||||+.+.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            566899999999999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00014  Score=56.87  Aligned_cols=20  Identities=60%  Similarity=0.815  Sum_probs=18.4

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00014  Score=53.73  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|||++|+|||||+..|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6799999999999999999873

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.03  E-value=0.00014  Score=53.86  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|+.|+|||||++.|.+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999886

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00016  Score=56.32  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -.++.|+||.||||||+.+.|+..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00016  Score=55.18  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||+.+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.99  E-value=0.00017  Score=55.05  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|+|++||||||+.+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00019  Score=54.91  Aligned_cols=22  Identities=55%  Similarity=0.736  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|+|+.|+|||||++.|.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=55.72  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ..+.|+||||||||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.97  E-value=0.00013  Score=56.49  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||+.+.|+-.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=55.59  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||..+.|+-.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00019  Score=54.50  Aligned_cols=22  Identities=55%  Similarity=0.724  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|+|..++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.96  E-value=0.00017  Score=53.68  Aligned_cols=22  Identities=41%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|||++|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998873

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.0002  Score=54.88  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|||+|..|+|||||++.|.|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999884

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00018  Score=53.78  Aligned_cols=24  Identities=50%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |=.|+|+|+.++|||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            336899999999999999999985

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.94  E-value=0.00014  Score=56.59  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++.++.|+||.||||||+.+.|+-.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.00016  Score=55.21  Aligned_cols=22  Identities=45%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -|+|||+.|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.94  E-value=0.00011  Score=56.44  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=19.7

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |||+|+.++|||||++.|.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999884

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00024  Score=57.48  Aligned_cols=24  Identities=42%  Similarity=0.693  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          197 GELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       197 Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      |...+++|++|+|||||+++|.|-
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            568899999999999999999884

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0002  Score=54.31  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|+|+.||||||+.++|+..
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00022  Score=55.40  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.++|.+|||||||++.|+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.90  E-value=0.00023  Score=54.66  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||+.+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999975

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00017  Score=55.31  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |||+|..++|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999984

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00028  Score=54.36  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++-+.+.++|++||||||+++.+.-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.83  E-value=0.00029  Score=52.97  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|+.|||||||++.|.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999984

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00026  Score=55.01  Aligned_cols=22  Identities=41%  Similarity=0.643  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+|||+.+||||||++.|.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999884

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00027  Score=54.66  Aligned_cols=22  Identities=36%  Similarity=0.661  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++||.|+.||||||+++.|.-+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            6899999999999999999753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00033  Score=54.85  Aligned_cols=22  Identities=45%  Similarity=0.664  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|.||.||||||+.+.|+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999985

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.00034  Score=53.60  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|+||.||||||+.+.|+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00047  Score=52.79  Aligned_cols=27  Identities=22%  Similarity=0.462  Sum_probs=23.7

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      -|.+|+.+.|.|++|||||||+-.++.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            388999999999999999999766653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00033  Score=55.15  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|-||.||||||..+.|+..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999999985

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00031  Score=53.74  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||..+.|+-.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.74  E-value=0.00034  Score=53.09  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|.|++||||||+++.|+..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5678899999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00017  Score=54.72  Aligned_cols=22  Identities=50%  Similarity=0.536  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+|+|+.++|||||++.|.+.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999885

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.72  E-value=0.00037  Score=52.66  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|..|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999984

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.71  E-value=0.00025  Score=57.26  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITING   91 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g   91 (240)
                      ..+.|.||.|||||||+++|++.+.   .+-+.++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh---cceEEEec
Confidence            3589999999999999999999633   23455654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0006  Score=55.25  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             EEEEeC-CCEEEEECCCCchHHHHHHHHhC
Q psy310           49 SGRLRS-GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        49 sl~I~~-Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.+.+ ..++.|.|||.+||||+||.++-
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEECCCceEEEEeccCchhhHHHHHHHHH
Confidence            345544 46789999999999999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.70  E-value=0.00042  Score=54.00  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .-++.|+||.||||||+.+.|+-.
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999999975

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.00045  Score=52.99  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|+||.||||||+.+.|+-.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.00016  Score=54.04  Aligned_cols=22  Identities=45%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|+.++|||||++.|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999983

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.59  E-value=0.00035  Score=54.06  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+|+|-|+.||||||+++.|+..
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999975

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.00063  Score=51.93  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=25.4

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhC-Ccccc
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTG-YKILR  224 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G-~~~~~  224 (240)
                      .++|++++|-|+=|||||||.|.|+. +....
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~   61 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence            46789999999999999999998874 44433

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00063  Score=53.60  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=23.7

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.+|+++.|.||.|||||||+..++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999987753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.55  E-value=0.00096  Score=53.66  Aligned_cols=28  Identities=39%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             EEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           49 SGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        49 sl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.+. ++++.|.|||.+||||+||.++=
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhHH
Confidence            44443 46899999999999999998753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0012  Score=54.47  Aligned_cols=74  Identities=19%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccccccccHHHHHH
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMN  123 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~  123 (240)
                      -=|++|.++-|.||+|||||||+-.++-....+..-.++++..........+.+|.-..+-.+....++++.+.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~  122 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE  122 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHH
Confidence            46789999999999999999999777653222222245565544322333344444333322233334555443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.54  E-value=0.00043  Score=55.76  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -+.|.||+|||||||+++|++.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999884

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00053  Score=57.92  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|||.|++|||||||.+.|..+
T Consensus        82 iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHH
Confidence            7999999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.51  E-value=0.00046  Score=58.61  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=25.7

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCCCCCCccEEEE
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITI   89 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v   89 (240)
                      .-+.|.|+.||||||||++|.+.+ ++..--|.+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i-~~~~rivti  199 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISI  199 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhc-ccccceeec
Confidence            348999999999999999999974 444434444

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.50  E-value=0.00059  Score=51.31  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999998876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.49  E-value=0.00066  Score=53.84  Aligned_cols=41  Identities=24%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCC-CCccEEEECCcc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTS-GTEGSITINGHE   93 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~-~~~G~V~v~g~~   93 (240)
                      ++|-++-|.|.+||||||+.+.|.-.+.. ...-.+.++|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            57889999999999999999999742110 011245677644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.48  E-value=0.00027  Score=57.39  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +|..++|+|++|+|||||+++|.|-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            4678999999999999999999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.00065  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++||.|+.||||||++++|.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.46  E-value=0.00072  Score=51.12  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +++|+|+.|+|||||++.|.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7999999999999999999885

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.44  E-value=0.00074  Score=55.21  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .|+|+|+.|+|||||++.|.|-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4999999999999999999995

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00071  Score=51.17  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999998875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.00072  Score=53.65  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|.||+|+|||||+++|+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999999874

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.40  E-value=0.00073  Score=55.26  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|+|.+|+|||||++.|.|.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999995

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.00078  Score=50.92  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            389999999999999998765

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00086  Score=53.66  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -.+.|.||+|+||||++++|+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999985

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00072  Score=52.72  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -|+|+|+.|+|||||++.|.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999987

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00075  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999988776

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.32  E-value=0.0025  Score=49.35  Aligned_cols=35  Identities=29%  Similarity=0.251  Sum_probs=27.1

Q ss_pred             ceeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           42 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        42 ~~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +..++..-+.+ .|.=++|.|++|+|||||+-.|..
T Consensus         2 ~~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           2 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34556555555 788899999999999999987765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.32  E-value=0.00082  Score=50.79  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|||+.|+|||||++.|.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999773

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.29  E-value=0.001  Score=52.20  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -+.+|+++.|.|++|+|||||+.-++-
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            388999999999999999999977763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0011  Score=51.98  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|.+++|-|+-||||||+++.|...
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.28  E-value=0.0012  Score=52.46  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=19.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.+++++||+|+||||.+-=|+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998754554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.27  E-value=0.0013  Score=51.40  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -+++|+++.|.|++|+|||||+.-++
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            38899999999999999999985443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.26  E-value=0.0011  Score=52.65  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=22.6

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHh
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +++|+++.|.||+|||||||+--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999987554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0011  Score=52.35  Aligned_cols=26  Identities=38%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+|-+++|-|+-||||||+.+.|...
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0012  Score=49.60  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999976664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.25  E-value=0.00099  Score=51.04  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=19.9

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      |+|||...||||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0011  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++||.|..||||||.+++|..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            6899999999999999999753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=49.63  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.24  E-value=0.0013  Score=52.11  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|..+.|.|++|||||||+.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999976664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.001  Score=50.48  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987655

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0011  Score=52.51  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -|.+|.++.|.|++|||||||+..++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999999998776

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0014  Score=49.48  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|+.|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            4899999999999999999884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.19  E-value=0.0011  Score=52.65  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.+.||.|+|||||+++|+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4789999999999999999985

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.18  E-value=0.0026  Score=49.21  Aligned_cols=34  Identities=26%  Similarity=0.198  Sum_probs=28.1

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ..++..-+.+ .|.-+.|.|++|+|||||+..|.-
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3566666677 888999999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00069  Score=53.69  Aligned_cols=25  Identities=40%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +.+++|-|+-||||||+++.|+..+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999853

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=50.09  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999988876

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0012  Score=56.07  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G  219 (240)
                      -+|||+|++|||||||+..|..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.16  E-value=0.0013  Score=52.46  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+.++.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            567899999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.16  E-value=0.00091  Score=51.03  Aligned_cols=23  Identities=39%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      =+++|+|+.|+|||||++.+.+-
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0017  Score=51.00  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=23.3

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -|.+|..+.|.|+.|||||||.-.++
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            38899999999999999999977665

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.15  E-value=0.0012  Score=55.41  Aligned_cols=25  Identities=24%  Similarity=0.506  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +..-+.|+||+|+|||.|+|+|+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4456789999999999999999985

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0011  Score=49.85  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +|+|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.15  E-value=0.0014  Score=53.40  Aligned_cols=35  Identities=29%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             eeeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           43 TILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        43 ~~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +-|+.+..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34555544478999999999999999999877763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0021  Score=51.87  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             eEEeC-CcEEEEEcCCCCCHHHHHHHHhCCcccchh
Q psy310          192 GRLRS-GELTAIMGPSGAGKSTLLNILTGYKILRQL  226 (240)
Q Consensus       192 l~I~~-Ge~valvG~NGsGKSTLlk~l~G~~~~~~~  226 (240)
                      +.+.. ...+.|.|||.+||||++|.++=.....|+
T Consensus        35 i~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~   70 (234)
T d1wb9a2          35 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYI   70 (234)
T ss_dssp             EEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTT
T ss_pred             EEECCCceEEEEeccCchhhHHHHHHHHHHHHHHHc
Confidence            44444 346889999999999999998544444444

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.13  E-value=0.0013  Score=50.36  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.0011  Score=52.81  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.|.||.|+|||||+++|++.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999984

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.12  E-value=0.002  Score=51.65  Aligned_cols=34  Identities=38%  Similarity=0.431  Sum_probs=24.9

Q ss_pred             eeEEeCCcEEEEEcCCCCCHHHHHHHHhCCcccch
Q psy310          191 SGRLRSGELTAIMGPSGAGKSTLLNILTGYKILRQ  225 (240)
Q Consensus       191 sl~I~~Ge~valvG~NGsGKSTLlk~l~G~~~~~~  225 (240)
                      |+.+.. +.+.|.|||.+||||++|.+.=.....|
T Consensus        30 di~~~~-~~~iiTGpN~~GKSt~lk~i~l~~ilAq   63 (224)
T d1ewqa2          30 DLEMAH-ELVLITGPNMAGKSTFLRQTALIALLAQ   63 (224)
T ss_dssp             EEEESS-CEEEEESCSSSSHHHHHHHHHHHHHHHT
T ss_pred             eEEeCC-cEEEEECCCccccchhhhhhHHHHHHHh
Confidence            444543 5899999999999999998854333333

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0012  Score=49.93  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.11  E-value=0.00064  Score=56.83  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++||.|++||||||+.+.|...
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i   27 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQI   27 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7999999999999999988764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0013  Score=55.93  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.-++||.|+.|||||||+..|..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHH
Confidence            355799999999999999999975

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0014  Score=49.70  Aligned_cols=21  Identities=43%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999987765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0013  Score=51.85  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|.||+|+|||||+++|+..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0012  Score=49.44  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++++||++|+|||||++.+.+
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0013  Score=49.25  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +|+|||..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0014  Score=49.12  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0013  Score=49.68  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0015  Score=48.71  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0015  Score=49.00  Aligned_cols=21  Identities=43%  Similarity=0.563  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0019  Score=48.53  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.99  E-value=0.0031  Score=51.91  Aligned_cols=74  Identities=19%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCcc-EEEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEG-SITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G-~V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      -=|+.|.++-|-||+|||||||+..++.....+ .| .++++....-...+.+.+|+-+.+-.+.+..+.++.+..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~-g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~  126 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEI  126 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHhC-CCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHH
Confidence            367899999999999999999998777642222 24 355555433223344445554443333334455555443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.002  Score=48.81  Aligned_cols=22  Identities=45%  Similarity=0.748  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|+|..|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.98  E-value=0.001  Score=50.70  Aligned_cols=21  Identities=43%  Similarity=0.523  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.|.+
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999876

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.97  E-value=0.0022  Score=50.25  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.8

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      |.+|+.+.|.|++|+|||||+-.++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8999999999999999999966665

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0017  Score=56.49  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .|||+|+.|+|||||+++|.|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.0018  Score=51.24  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+.|.||+|+||||++++|+-
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.002  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ..+.|.||+|+||||++++|+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0017  Score=56.53  Aligned_cols=22  Identities=41%  Similarity=0.733  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|+|+|++|+|||||++.|.|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999984

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.002  Score=50.96  Aligned_cols=26  Identities=38%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +|-+++|=|+-||||||+++.|+-.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            68999999999999999999998753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.93  E-value=0.0021  Score=50.77  Aligned_cols=24  Identities=38%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      ++|-+|-|.|.+|||||||.+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999885

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.92  E-value=0.0026  Score=49.55  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      |.+|+.+.|.|++|+|||+|+-.++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999975443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.0019  Score=51.26  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.|.||+|+||||++++|+--
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            4889999999999999999853

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0019  Score=48.51  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999997764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0019  Score=49.09  Aligned_cols=21  Identities=48%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0017  Score=49.29  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|++|+|||||++.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.87  E-value=0.002  Score=51.11  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +..++.++||+|+||||.+-=|+-
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999998866664

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0022  Score=52.41  Aligned_cols=32  Identities=25%  Similarity=0.603  Sum_probs=22.0

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      .++.+.....+  .+.|.||+|||||+|+++|+.
T Consensus        36 ~~~~~g~~~~~--~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          36 RFQKLGGKIPK--GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             GC-----CCCC--EEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHcCCCCCC--eEEeeCCCCCCccHHHHHHHH
Confidence            34444333344  488999999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0025  Score=52.13  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+....-+.|.||.|+|||+|+++|+..
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3444566899999999999999999985

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.85  E-value=0.0019  Score=52.33  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+.|.||.|+|||+|+++|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4789999999999999999985

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0024  Score=48.60  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=24.5

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|.+++|-|+=|||||||.|.|+.-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhh
Confidence            468999999999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0024  Score=48.22  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=17.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999966543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.83  E-value=0.0026  Score=51.61  Aligned_cols=50  Identities=24%  Similarity=0.281  Sum_probs=33.1

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhC-C-cccc-h-hhh-ccCChhhh
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG-Y-KILR-Q-LWL-LEYSHKDL  236 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G-~-~~~~-~-~~~-~~~~~~~~  236 (240)
                      |+.+..-+++|+.+.|.|++|+|||||+-.|+- + ...+ . +++ +|.|++.+
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~   79 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEET   79 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhH
Confidence            333333478999999999999999998766653 2 1211 1 222 77777654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.83  E-value=0.0033  Score=51.85  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCCCCCCCccE-EEECCccCCchhhhhhceEEcccccccccccHHHHHHH
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGS-ITINGHERNLSQFRKLSCYIMQDNQLHANLTVEEAMNV  124 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~-V~v~g~~~~~~~~~~~~g~v~Q~~~~~~~ltv~e~l~~  124 (240)
                      -++.|.++-|.||+|||||||+-.++.... ...|. |+++....-.....+.+|.-..+-.+....++++.+..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q-~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~  129 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEI  129 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHH-HTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHh-cCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHH
Confidence            678999999999999999999755554212 22344 45555442222333344443333223333455555443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0021  Score=48.29  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.80  E-value=0.0024  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=17.8

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -++++|||+|+||||.+-=|+-
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999998754443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.80  E-value=0.0013  Score=55.73  Aligned_cols=28  Identities=21%  Similarity=0.487  Sum_probs=24.0

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      |+.+.-+.|.|+.|||||||+++|+++.
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhc
Confidence            4445569999999999999999999973

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0019  Score=48.70  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.79  E-value=0.0024  Score=49.37  Aligned_cols=22  Identities=55%  Similarity=0.738  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|-|.-||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999863

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.78  E-value=0.0031  Score=49.88  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=22.8

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      |.+|..+.|.|++|||||||+..|+-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999765544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0024  Score=53.19  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++||-|+.|||||||.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            789999999999999987754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.78  E-value=0.0024  Score=53.97  Aligned_cols=22  Identities=36%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G  219 (240)
                      -+++|.|+.|+|||||+..|.-
T Consensus        52 ~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0022  Score=53.42  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.|-+|++.+|+|+.|+|||||+..|+-
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            4688999999999999999999988876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0023  Score=48.83  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999977665

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0027  Score=47.74  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            579999999999999988774

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.73  E-value=0.0022  Score=50.94  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.|.||+|+||||++++|+..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.0017  Score=49.19  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=9.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0021  Score=49.60  Aligned_cols=20  Identities=40%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            89999999999999997765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0024  Score=50.29  Aligned_cols=21  Identities=33%  Similarity=0.409  Sum_probs=18.9

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|.||.|+||||++++|+..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            689999999999999998763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.70  E-value=0.0031  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             CEEEEECCCCchHHHHHHHHhCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ..+.|.||.|+||||+++.|+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0026  Score=48.09  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +|+|||..|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.69  E-value=0.0017  Score=49.02  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|+.|+|||||++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999975

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0026  Score=47.85  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||+|++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987775

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.0021  Score=56.75  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYKTSG   82 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~~~~   82 (240)
                      =+.+|||+|||||-|+|.|++++.-|
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP   76 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP   76 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            47999999999999999999965444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0029  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+++++||+|+||||.+-=|+-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999998855554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0028  Score=49.91  Aligned_cols=21  Identities=33%  Similarity=0.553  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+.|.||+|+||||++++|+-
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            378999999999999999985

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0027  Score=53.35  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +|||.|+.|||||||.+.|..+
T Consensus        82 iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHH
Confidence            6999999999999998888654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0029  Score=48.40  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q psy310           57 LTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ++.|||.+|+|||||++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999998884

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.0028  Score=47.81  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0034  Score=49.48  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -|.+|..+.|.|++|||||+|.-.++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999999987775

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0017  Score=49.03  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.60  E-value=0.0037  Score=49.40  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=21.5

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHH
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l  217 (240)
                      +.+|..+.|.|++|||||||.-.+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            889999999999999999996544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.58  E-value=0.0035  Score=49.78  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhC
Q psy310          197 GELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       197 Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +..+.|.|+.|+|||||++.++-
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            35799999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.57  E-value=0.0028  Score=50.41  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++||+|...||||||++.|.+
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            599999999999999999987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.56  E-value=0.0031  Score=53.28  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCchHHHHHHHHhC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .-++||.|+.|||||||+..|..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            45799999999999999988875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.56  E-value=0.0029  Score=50.31  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=14.3

Q ss_pred             CCEEEEECCCCchHHHHHHHHhC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      -.++++|||+|+||||.+-=|+-
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999998755554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.54  E-value=0.0031  Score=51.15  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+.|.||.|+|||+|+++|+..
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            3799999999999999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0031  Score=49.55  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|.||.|+||||++++|+..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            789999999999999999863

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0041  Score=50.15  Aligned_cols=24  Identities=42%  Similarity=0.617  Sum_probs=21.4

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHh
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -+|+++.|.|+.|+|||||+-.|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            479999999999999999997665

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.51  E-value=0.0032  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0038  Score=46.72  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||..|+|||+|++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999987664

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0037  Score=47.64  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0036  Score=47.03  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999986644

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0037  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.397  Sum_probs=18.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999977654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.0029  Score=50.29  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +.|.||.|+||||++++++-.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999863

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0031  Score=51.59  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=23.7

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCCC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +.+..-+.|.||+|+|||+|+++|++.+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            4445568999999999999999999963

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.37  E-value=0.004  Score=49.26  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=18.0

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q psy310           57 LTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~   76 (240)
                      ++.|||.+|+|||||++-+.
T Consensus         8 KilllG~~~vGKTsll~~~~   27 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMR   27 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.35  E-value=0.0041  Score=50.32  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -+.|.||.|||||+|+++|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4899999999999999999863

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.0041  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=17.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|||+.|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999965543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.30  E-value=0.0042  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -+.|+||+|+|||.|.|+|+..
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4789999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0042  Score=50.47  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+.|.||.|+|||+|+++++..
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4899999999999999999985

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.28  E-value=0.0067  Score=46.45  Aligned_cols=33  Identities=33%  Similarity=0.198  Sum_probs=25.1

Q ss_pred             eeeeeEEEEeCCCEEEEECCCCchHHHHHHHHhC
Q psy310           44 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        44 ~L~~vsl~I~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .++..-+. -.|.-|.|.|++|+|||||+-.|..
T Consensus         5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            34554444 4788899999999999999876654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.27  E-value=0.0055  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G  219 (240)
                      ..+.|.|+.|+||||+++.|+-
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.24  E-value=0.0039  Score=49.53  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+.|.||+|+||||++++++-
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0042  Score=47.67  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +++|+|+.|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999976654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.12  E-value=0.0056  Score=48.51  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++||.|+-||||||.++.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999964

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.08  E-value=0.0036  Score=50.03  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|.||.|+||||+++.++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3566799999999999999863

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0055  Score=50.96  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=25.1

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      +.|-+|.+.+|+|+.|+|||||+..|+-
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            4688999999999999999999988864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0062  Score=50.54  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q psy310          199 LTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~  218 (240)
                      +|||.|+.|||||||.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            68999999999999987764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.0068  Score=49.72  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          199 LTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      .++++|+=.||||||+++|+|...
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCc
Confidence            599999999999999999999764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.99  E-value=0.0068  Score=50.01  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCCcc
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGYKI  222 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~~~  222 (240)
                      ..+++||+-.||||||+++|+|...
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            3699999999999999999999754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.99  E-value=0.006  Score=49.37  Aligned_cols=20  Identities=35%  Similarity=0.780  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhC
Q psy310          200 TAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       200 valvG~NGsGKSTLlk~l~G  219 (240)
                      +.|.||.|+|||+|+++|+.
T Consensus        45 iLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHH
Confidence            89999999999999999996

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.0061  Score=47.76  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+-|.||.|+||||++++|+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            378999999999999999985

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.94  E-value=0.0065  Score=47.69  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+-|.||+|+||||++++|+-
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            378999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.91  E-value=0.0061  Score=52.81  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.-.+.|.||.||||||+|..+...
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            35667999999999999999998875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.80  E-value=0.008  Score=45.34  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|||..|+|||||++-+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999988765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.71  E-value=0.0053  Score=48.98  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ++.|.||.|+||||++++++-.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3556799999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0079  Score=48.74  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=24.9

Q ss_pred             eccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          187 LKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       187 l~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      ++.......+|  +.|.||.|+|||+|+++|+..
T Consensus        30 ~~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          30 FKAIGVKPPRG--ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             HHHCCCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhCCCCCCce--eEEecCCCCCchHHHHHHHHH
Confidence            33334444566  899999999999999999983

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0077  Score=49.08  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -.+.|.||.|+|||+|+++|++.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            34899999999999999999984

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.011  Score=48.72  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=24.3

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.+-+|++++|+|+.|+|||||+..++
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            578899999999999999999987765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.0087  Score=45.30  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++.|+|..|+|||||++.+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            579999999999999988865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0087  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++++||+|+|||.|++.|+-.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            5789999999999999999985

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.012  Score=47.21  Aligned_cols=24  Identities=42%  Similarity=0.617  Sum_probs=20.9

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      .+|+.+.|.|+.|+|||||+-.|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            469999999999999999976654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.55  E-value=0.0038  Score=52.35  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             CEEEEECCCCchHHHHHHHHhCCC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      -.+.|+|+.|+|||||+|.|++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            458999999999999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.48  E-value=0.0099  Score=45.75  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=19.7

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|++|.-.+|||||+..|.|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeccCCcHHHHHHHHHhh
Confidence            799999999999999999984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.45  E-value=0.0095  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .|||||-.-+|||||+++|+|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999994

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0084  Score=49.43  Aligned_cols=22  Identities=45%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|+|+||-++||||||+.|.|.
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            7999999999999999999984

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.01  Score=46.79  Aligned_cols=22  Identities=36%  Similarity=0.448  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++|=|.-||||||+++.|+-.
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            7889999999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.32  E-value=0.014  Score=48.01  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|||.-.||||||+++|.|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            5899999999999999999996

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.19  E-value=0.014  Score=47.76  Aligned_cols=31  Identities=26%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHh-------CCcccchhhh
Q psy310          198 ELTAIMGPSGAGKSTLLNILT-------GYKILRQLWL  228 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~-------G~~~~~~~~~  228 (240)
                      -+++|.|.-|.|||||++.+.       +..+...+|.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv   82 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL   82 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEE
Confidence            379999999999999999873       2334556776

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.15  E-value=0.015  Score=47.61  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++|||.-.||||||+++|.|.
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Confidence            4899999999999999999996

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.09  E-value=0.011  Score=50.55  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             EEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           51 RLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        51 ~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .++++..+++.||.|+|||||.++|+..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999999999996

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.08  E-value=0.0098  Score=49.12  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhCC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+=.+||||-.-+|||||+++|++.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            3446999999999999999999974

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.89  E-value=0.02  Score=48.11  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=26.1

Q ss_pred             eeccceeEEeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          186 ILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       186 il~~vsl~I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +++-+-..+.+| .+.+.||+|+|||.|.++|++-
T Consensus       113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            444444566777 5666899999999999999974

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.72  E-value=0.015  Score=47.40  Aligned_cols=22  Identities=45%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+||||-.-+|||||+++|++.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999974

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.71  E-value=0.013  Score=51.40  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q psy310          200 TAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       200 valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.++||.|||||-|+|.|+++
T Consensus        52 ILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          52 ILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999884

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.64  E-value=0.015  Score=47.61  Aligned_cols=20  Identities=40%  Similarity=0.652  Sum_probs=18.1

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q psy310           57 LTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -++|+|..|+|||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37999999999999999884

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.018  Score=47.35  Aligned_cols=22  Identities=45%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +|+|+|+-++|||||+..|.|-
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            7999999999999999999985

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.61  E-value=0.018  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             CCEEEEECCCCchHHHHHHHHhC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ..+++|.|.-|.|||||++.+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.013  Score=50.25  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=18.2

Q ss_pred             CCEEEEECCCCchHHHHHHHHh
Q psy310           55 GELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -.++.|+|++|||||++++.|.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            3569999999999999987543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.58  E-value=0.014  Score=49.87  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          194 LRSGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +.++..+.|.||+|+|||+|.++|+.+
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence            356678999999999999999999886

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.39  E-value=0.022  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -.+.|.||.||||||++..+...
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            38999999999999998888764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.35  E-value=0.024  Score=46.59  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=24.2

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      +.|-+|.+++|+|+.|+|||||+..|+
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            578999999999999999999977664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.32  E-value=0.021  Score=44.53  Aligned_cols=20  Identities=35%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++++|.-++|||||+..|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999863

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.022  Score=44.44  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.+.||.|+||||++++++..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            3789999999999999998874

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.032  Score=45.39  Aligned_cols=27  Identities=33%  Similarity=0.538  Sum_probs=22.4

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      -|.+|.++.|.|++|||||||.=.++.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHH
Confidence            378899999999999999998554443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.022  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q psy310           57 LTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .+.|.||+|+||||++++++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            367889999999999999875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.21  E-value=0.019  Score=47.16  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=17.9

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q psy310           57 LTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -++|+|..|||||||+..|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            38999999999999998883

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.09  E-value=0.011  Score=49.27  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.|+|+.|+|||||+|.|+++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            5899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.89  E-value=0.025  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +.++||+|+|||-|.|.|+.+.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            5788999999999999999853

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.73  E-value=0.028  Score=44.11  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=19.0

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q psy310           58 TAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +-|.||+|+|||-|+++++-.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999999863

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.71  E-value=0.031  Score=43.24  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -++++|.=.+|||||+..|.|.
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEEEccCCcHHHHHHHHHhh
Confidence            4899999999999999999985

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.034  Score=46.23  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.++||.|+|||.|++.|+-.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            6899999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.36  E-value=0.06  Score=40.87  Aligned_cols=24  Identities=38%  Similarity=0.274  Sum_probs=18.8

Q ss_pred             eCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          195 RSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       195 ~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -.|.-|.|.|++|+|||||.-.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            345579999999999999864443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.30  E-value=0.028  Score=47.16  Aligned_cols=28  Identities=29%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ....+| ++.|+||.|+|||.|.+.|++.
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            344444 5666899999999999999985

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.035  Score=45.38  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             CEEEEECCCCchHHHHHHHHhC
Q psy310           56 ELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      .-+.||||.|+|||++..-|+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3578999999999999998886

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.21  E-value=0.033  Score=46.44  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.++||+|+|||.|++.|+-.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5789999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.04  Score=42.88  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      -+.|||+.|.|||+++.-|+-
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            589999999999999887764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.039  Score=43.63  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+.|.||+|+||||++++++-
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            377889999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.04  Score=42.93  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      -+.||||.|.|||++..-|+..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            4789999999999999988863

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.041  Score=44.90  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhCC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .-+.|||+.|+|||++++.++-.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999888753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.03  Score=44.19  Aligned_cols=22  Identities=41%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      ++.|.|.=||||||||+-|...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5788999999999999888763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.045  Score=42.49  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      .+.|.|+.|+||||+++.++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999998765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.83  E-value=0.024  Score=46.64  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.6

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.|-+|++++|+|+.|+|||+|+..+.
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHH
Confidence            477899999999999999999997543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.62  E-value=0.022  Score=47.00  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             EEEeCCCEEEEECCCCchHHHHHHHHh
Q psy310           50 GRLRSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        50 l~I~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      +.+-+|++++|+|+.|+|||+|+..++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            578899999999999999999986554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.54  E-value=0.06  Score=43.91  Aligned_cols=26  Identities=31%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHh
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      -|..|.++.|.|++|||||||+-.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHH
Confidence            37889999999999999999954444

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.34  E-value=0.059  Score=43.83  Aligned_cols=58  Identities=9%  Similarity=0.165  Sum_probs=36.8

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCCCCCCCccEEEECCccCCchhhhhhceEEcccccc
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGYKTSGTEGSITINGHERNLSQFRKLSCYIMQDNQL  112 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~~~~~~~G~V~v~g~~~~~~~~~~~~g~v~Q~~~~  112 (240)
                      .+--++.|.||-++|||||+.+|..++  +..|.+.-......+..+......+.+|+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l--g~~~~~~~~~~~f~l~~l~~k~~~~~~e~~~  159 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV--PFYGCVNWTNENFPFNDCVDKMVIWWEEGKM  159 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS--SCEEECCTTCSSCTTGGGSSCSEEEECSCCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh--cchhhccccCCCccccccCCCEEEEEeCCCc
Confidence            556688999999999999999999873  2344332111122233444445566677653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.069  Score=38.74  Aligned_cols=25  Identities=36%  Similarity=0.686  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCCHHH-HHHHHhCC
Q psy310          196 SGELTAIMGPSGAGKST-LLNILTGY  220 (240)
Q Consensus       196 ~Ge~valvG~NGsGKST-Llk~l~G~  220 (240)
                      +|....|+||-.||||| |++.+.-+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            68899999999999999 67766544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.29  E-value=0.073  Score=43.32  Aligned_cols=27  Identities=33%  Similarity=0.596  Sum_probs=23.2

Q ss_pred             EEeCCcEEEEEcCCCCCHHHHHHHHhC
Q psy310          193 RLRSGELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       193 ~I~~Ge~valvG~NGsGKSTLlk~l~G  219 (240)
                      -|..|.++-|.|+.|||||||.-.++.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHH
Confidence            378899999999999999999766654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.047  Score=46.55  Aligned_cols=20  Identities=40%  Similarity=0.572  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q psy310          199 LTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~  218 (240)
                      ++.|+|..|||||++++.|+
T Consensus        52 H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHH
Confidence            69999999999999987553

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.85  E-value=0.034  Score=45.61  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=23.5

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l  217 (240)
                      +.|.+|.+++|+|+.|+|||+|+..+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             ccccCCceEeeccCCCCChHHHHHHH
Confidence            67899999999999999999998653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.69  E-value=0.059  Score=41.68  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++++|.-.+|||||+..|.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999998876

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.53  E-value=0.062  Score=42.18  Aligned_cols=19  Identities=37%  Similarity=0.497  Sum_probs=17.5

Q ss_pred             EEEECCCCchHHHHHHHHh
Q psy310           58 TAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~   76 (240)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999998884

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.31  E-value=0.063  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|.|=|+=||||||+++.|+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC-
T ss_pred             EEEEECCcCCCHHHHHHHHHHH
Confidence            4789999999999999999875

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.27  E-value=0.051  Score=44.77  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=23.2

Q ss_pred             eEEeCCcEEEEEcCCCCCHHHHHHHH
Q psy310          192 GRLRSGELTAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       192 l~I~~Ge~valvG~NGsGKSTLlk~l  217 (240)
                      +.|.+|.+++|+|+.|+|||+|+..+
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~   88 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDT   88 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHH
Confidence            57899999999999999999997644

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.07  Score=44.42  Aligned_cols=20  Identities=40%  Similarity=0.738  Sum_probs=17.9

Q ss_pred             eCCCEEEEECCCCchHHHHH
Q psy310           53 RSGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLL   72 (240)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999976

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.75  E-value=0.091  Score=41.00  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhC
Q psy310          200 TAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       200 valvG~NGsGKSTLlk~l~G  219 (240)
                      +-|.|+.|||||-|+++++-
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67999999999999999874

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.65  E-value=0.07  Score=44.55  Aligned_cols=19  Identities=42%  Similarity=0.772  Sum_probs=17.2

Q ss_pred             CCCEEEEECCCCchHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLL   72 (240)
                      .|++..+.|-||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999975

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.57  E-value=0.089  Score=44.62  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      -+.++||.|+|||-|.|.|+-+
T Consensus        70 niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHhh
Confidence            3889999999999999999754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.25  E-value=0.1  Score=43.75  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +|.|=|+=||||||+++.|+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEECCccCCHHHHHHHHHHH
Confidence            5788899999999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.19  E-value=0.11  Score=41.95  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCc
Q psy310          197 GELTAIMGPSGAGKSTLLNILTGYK  221 (240)
Q Consensus       197 Ge~valvG~NGsGKSTLlk~l~G~~  221 (240)
                      +=.++++|.+-+|||||++.|.|-+
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            3469999999999999999999953

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.08  E-value=0.073  Score=43.25  Aligned_cols=17  Identities=35%  Similarity=0.536  Sum_probs=14.4

Q ss_pred             CEEEEECCCCchHHHHH
Q psy310           56 ELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLL   72 (240)
                      ..+.|.|+-||||||.|
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            34789999999999876

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.03  E-value=0.097  Score=44.08  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=17.9

Q ss_pred             EEEECCCCchHHHHHHHHh
Q psy310           58 TAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~   76 (240)
                      |||+|.-++|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999884

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.99  E-value=0.05  Score=38.17  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=17.8

Q ss_pred             EeCCCEEEEECCCCchHHHHH
Q psy310           52 LRSGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLL   72 (240)
                      +++|+.+.|..|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            357999999999999999544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.96  E-value=0.12  Score=40.63  Aligned_cols=20  Identities=35%  Similarity=0.338  Sum_probs=18.3

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++++|.-.+|||||+..|..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            79999999999999999953

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=88.94  E-value=0.12  Score=41.76  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHH-HH----Hh-CCcccchhhhccCChh
Q psy310          199 LTAIMGPSGAGKSTLL-NI----LT-GYKILRQLWLLEYSHK  234 (240)
Q Consensus       199 ~valvG~NGsGKSTLl-k~----l~-G~~~~~~~~~~~~~~~  234 (240)
                      .+.|.|+.||||||.+ ..    |. +-..|.++.++-|+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~   67 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK   67 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHH
Confidence            3779999999999853 32    22 2234455644555543

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=88.82  E-value=0.092  Score=42.10  Aligned_cols=17  Identities=18%  Similarity=0.481  Sum_probs=14.3

Q ss_pred             CEEEEECCCCchHHHHH
Q psy310           56 ELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        56 e~vgLvG~NGSGKSTLL   72 (240)
                      .-+.|+|+-||||||.|
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34689999999999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.73  E-value=0.11  Score=43.13  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q psy310          199 LTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G~  220 (240)
                      .+.++||.|+|||.|++.|+-.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            5789999999999999988864

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.73  E-value=0.1  Score=43.63  Aligned_cols=19  Identities=47%  Similarity=0.805  Sum_probs=17.8

Q ss_pred             CCCEEEEECCCCchHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLL   72 (240)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            7888999999999999997

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.26  E-value=0.13  Score=41.03  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHHhC
Q psy310          198 ELTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~l~G  219 (240)
                      .-|.|.|+.|+||+++.++|-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999999999964

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.11  E-value=0.083  Score=44.33  Aligned_cols=23  Identities=22%  Similarity=0.132  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q psy310           57 LTAIMGPSGAGKSTLLNILTGYK   79 (240)
Q Consensus        57 ~vgLvG~NGSGKSTLLr~L~G~~   79 (240)
                      +|.|=|+=||||||+++.|+-.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58889999999999999998753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.91  E-value=0.13  Score=41.01  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ...-|.|.|+.|+||++++++|..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHH
Confidence            355689999999999999999975

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.75  E-value=0.11  Score=41.43  Aligned_cols=18  Identities=39%  Similarity=0.455  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q psy310          200 TAIMGPSGAGKSTLLNIL  217 (240)
Q Consensus       200 valvG~NGsGKSTLlk~l  217 (240)
                      |+++|+-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            899999999999999988

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.46  E-value=0.16  Score=36.32  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=21.1

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ++|=.+-+-|-+||||||+.++|.-
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3566788999999999999999954

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.12  Score=43.45  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q psy310          200 TAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       200 valvG~NGsGKSTLlk~l~  218 (240)
                      |||+|+-++|||||+.+|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            9999999999999999994

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.03  E-value=0.11  Score=36.91  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=17.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLLNIL   75 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L   75 (240)
                      .-+...|.+|.|||||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            3456678999999999987443

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.97  E-value=0.22  Score=36.34  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCCHHH-HHHHHhC
Q psy310          196 SGELTAIMGPSGAGKST-LLNILTG  219 (240)
Q Consensus       196 ~Ge~valvG~NGsGKST-Llk~l~G  219 (240)
                      .|..-.|+||-.||||| |++.+--
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHH
Confidence            58889999999999999 6776643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.71  E-value=0.12  Score=44.13  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=16.7

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q psy310           58 TAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~G   77 (240)
                      +.|||+.|.|||+++.-|+.
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            58999999999998865553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.65  E-value=0.18  Score=40.62  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +-.++|||-.-+|||||++.|.|.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             ceEEEEEecCccchhhhhhhhhcc
Confidence            345999999999999999999995

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.61  E-value=0.16  Score=40.28  Aligned_cols=19  Identities=32%  Similarity=0.438  Sum_probs=17.3

Q ss_pred             EEEECCCCchHHHHHHHHh
Q psy310           58 TAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L~   76 (240)
                      ++++|.-++|||||+..|.
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7999999999999998774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.56  E-value=0.14  Score=43.78  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q psy310          199 LTAIMGPSGAGKSTLLNILTG  219 (240)
Q Consensus       199 ~valvG~NGsGKSTLlk~l~G  219 (240)
                      -+.|||+.|.|||+++.-|+-
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            378999999999999876653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.37  E-value=0.13  Score=40.91  Aligned_cols=18  Identities=39%  Similarity=0.455  Sum_probs=17.1

Q ss_pred             EEEECCCCchHHHHHHHH
Q psy310           58 TAIMGPSGAGKSTLLNIL   75 (240)
Q Consensus        58 vgLvG~NGSGKSTLLr~L   75 (240)
                      ++++|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999888

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=86.31  E-value=0.088  Score=42.25  Aligned_cols=19  Identities=37%  Similarity=0.468  Sum_probs=17.2

Q ss_pred             EeCCCEEEEECCCCchHHH
Q psy310           52 LRSGELTAIMGPSGAGKST   70 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKST   70 (240)
                      +.+|+.+.|.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4589999999999999996

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.22  E-value=0.23  Score=38.13  Aligned_cols=24  Identities=21%  Similarity=0.076  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCchHHHHHHHHhCC
Q psy310           55 GELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        55 Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +--+.+-||+|+||||+++.++..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            446889999999999999998873

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.82  E-value=0.2  Score=45.90  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ...+.+.|.|+||||||+-.|.|..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999998865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.25  Score=41.55  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=16.1

Q ss_pred             cEEEEEcCCCCCHHHHHHH
Q psy310          198 ELTAIMGPSGAGKSTLLNI  216 (240)
Q Consensus       198 e~valvG~NGsGKSTLlk~  216 (240)
                      ..+.|.|+.|+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            3799999999999997643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.39  E-value=0.27  Score=35.09  Aligned_cols=23  Identities=13%  Similarity=0.026  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHh
Q psy310          196 SGELTAIMGPSGAGKSTLLNILT  218 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~  218 (240)
                      +|=.+-+.|-.|||||||.++|.
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHH
Confidence            46568899999999999998884

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.29  E-value=0.26  Score=39.76  Aligned_cols=25  Identities=16%  Similarity=0.365  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +--++.|.|+.++|||||+++|+.+
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3357999999999999999999885

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.13  E-value=0.11  Score=36.21  Aligned_cols=20  Identities=35%  Similarity=0.410  Sum_probs=17.4

Q ss_pred             EeCCcEEEEEcCCCCCHHHH
Q psy310          194 LRSGELTAIMGPSGAGKSTL  213 (240)
Q Consensus       194 I~~Ge~valvG~NGsGKSTL  213 (240)
                      +++|+.+.|..+.|||||..
T Consensus         4 l~~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTT
T ss_pred             HHcCCcEEEEcCCCCChhHH
Confidence            46789999999999999954

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.63  E-value=0.24  Score=45.66  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.+.+.|.|+||||||.-.|.|...
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~y  148 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQY  148 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999999988763

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.22  E-value=0.32  Score=40.93  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=17.2

Q ss_pred             CCCEEEEECCCCchHHHHHH
Q psy310           54 SGELTAIMGPSGAGKSTLLN   73 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr   73 (240)
                      .+.++.|.||-|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            35689999999999999873

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.82  E-value=0.32  Score=35.29  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             CCEEEEECCCCchHHH-HHHHHhC
Q psy310           55 GELTAIMGPSGAGKST-LLNILTG   77 (240)
Q Consensus        55 Ge~vgLvG~NGSGKST-LLr~L~G   77 (240)
                      |.+..++||=.||||| |++.+..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6678899999999999 7777755

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.75  E-value=0.27  Score=45.20  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      .+.+.+.|-|+||||||+-.|.|...
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~y  114 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQY  114 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999998888663

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=83.74  E-value=0.26  Score=38.33  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=24.1

Q ss_pred             EeCCCEEEEECCCCchHHHHHHHHhCC
Q psy310           52 LRSGELTAIMGPSGAGKSTLLNILTGY   78 (240)
Q Consensus        52 I~~Ge~vgLvG~NGSGKSTLLr~L~G~   78 (240)
                      +++--++.|.||.++|||+|+.+|..+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            466778999999999999999999886

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.58  E-value=0.21  Score=38.90  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=16.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHH
Q psy310          196 SGELTAIMGPSGAGKSTLLN  215 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk  215 (240)
                      +|+-+.++.|.|+|||+..-
T Consensus        57 ~g~~~~i~apTGsGKT~~~~   76 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGL   76 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHH
Confidence            45678899999999998643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.57  E-value=0.19  Score=38.14  Aligned_cols=20  Identities=35%  Similarity=0.413  Sum_probs=16.6

Q ss_pred             eCCCEEEEECCCCchHHHHH
Q psy310           53 RSGELTAIMGPSGAGKSTLL   72 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLL   72 (240)
                      .+|..+.|..|.|||||+..
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35777889999999999864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=82.13  E-value=0.22  Score=38.70  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCC
Q psy310          196 SGELTAIMGPSGAGKSTLLNILTGY  220 (240)
Q Consensus       196 ~Ge~valvG~NGsGKSTLlk~l~G~  220 (240)
                      +--++.|.||.++|||+|..+|+.+
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3368999999999999999888876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.06  E-value=0.31  Score=45.35  Aligned_cols=25  Identities=32%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHhC
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ...+.+.|.|+||||||+-.|.|..
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~  145 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQ  145 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999998887765

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.81  E-value=0.19  Score=39.14  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             eCCCEEEEECCCCchHHHHHHHHh
Q psy310           53 RSGELTAIMGPSGAGKSTLLNILT   76 (240)
Q Consensus        53 ~~Ge~vgLvG~NGSGKSTLLr~L~   76 (240)
                      -.|+-+.|+.|.|+|||+..-+.+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            368889999999999998655443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.52  E-value=0.36  Score=44.93  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=20.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHHhC
Q psy310           54 SGELTAIMGPSGAGKSTLLNILTG   77 (240)
Q Consensus        54 ~Ge~vgLvG~NGSGKSTLLr~L~G   77 (240)
                      ..+.+.|-|+||||||.-.|.|..
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~  143 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIM  143 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999998777765